/**
 * Scaffolding file used to store all the setups needed to run 
 * tests automatically generated by EvoSuite
 * Thu Sep 20 11:46:48 GMT 2018
 */

package uk.ac.sanger.artemis.components.alignment;

import org.evosuite.runtime.annotation.EvoSuiteClassExclude;
import org.junit.BeforeClass;
import org.junit.Before;
import org.junit.After;
import org.junit.AfterClass;
import org.evosuite.runtime.sandbox.Sandbox;
import org.evosuite.runtime.sandbox.Sandbox.SandboxMode;

import static org.evosuite.shaded.org.mockito.Mockito.*;
@EvoSuiteClassExclude
public class CoveragePanel_ESTest_scaffolding {

  @org.junit.Rule 
  public org.evosuite.runtime.vnet.NonFunctionalRequirementRule nfr = new org.evosuite.runtime.vnet.NonFunctionalRequirementRule();

  private static final java.util.Properties defaultProperties = (java.util.Properties) java.lang.System.getProperties().clone(); 

  private org.evosuite.runtime.thread.ThreadStopper threadStopper =  new org.evosuite.runtime.thread.ThreadStopper (org.evosuite.runtime.thread.KillSwitchHandler.getInstance(), 3000);


  @BeforeClass 
  public static void initEvoSuiteFramework() { 
    org.evosuite.runtime.RuntimeSettings.className = "uk.ac.sanger.artemis.components.alignment.CoveragePanel"; 
    org.evosuite.runtime.GuiSupport.initialize(); 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfThreads = 100; 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfIterationsPerLoop = 10000; 
    org.evosuite.runtime.RuntimeSettings.mockSystemIn = true; 
    org.evosuite.runtime.RuntimeSettings.sandboxMode = org.evosuite.runtime.sandbox.Sandbox.SandboxMode.RECOMMENDED; 
    org.evosuite.runtime.sandbox.Sandbox.initializeSecurityManagerForSUT(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.init();
    setSystemProperties();
    initializeClasses();
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    try { initMocksToAvoidTimeoutsInTheTests(); } catch(ClassNotFoundException e) {} 
  } 

  @AfterClass 
  public static void clearEvoSuiteFramework(){ 
    Sandbox.resetDefaultSecurityManager(); 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
  } 

  @Before 
  public void initTestCase(){ 
    threadStopper.storeCurrentThreads();
    threadStopper.startRecordingTime();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().initHandler(); 
    org.evosuite.runtime.sandbox.Sandbox.goingToExecuteSUTCode(); 
    setSystemProperties(); 
    org.evosuite.runtime.GuiSupport.setHeadless(); 
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    org.evosuite.runtime.agent.InstrumentingAgent.activate(); 
  } 

  @After 
  public void doneWithTestCase(){ 
    threadStopper.killAndJoinClientThreads();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().safeExecuteAddedHooks(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.reset(); 
    resetClasses(); 
    org.evosuite.runtime.sandbox.Sandbox.doneWithExecutingSUTCode(); 
    org.evosuite.runtime.agent.InstrumentingAgent.deactivate(); 
    org.evosuite.runtime.GuiSupport.restoreHeadlessMode(); 
  } 

  public static void setSystemProperties() {
 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
    java.lang.System.setProperty("file.encoding", "UTF-8"); 
    java.lang.System.setProperty("java.awt.headless", "true"); 
    java.lang.System.setProperty("java.io.tmpdir", "/var/folders/r3/l648tx8s7hn8ppds6z2bk5cc000h2n/T/"); 
    java.lang.System.setProperty("user.country", "GB"); 
    java.lang.System.setProperty("user.dir", "/Users/kp11/workspace/applications/Artemis-build-ci/Artemis"); 
    java.lang.System.setProperty("user.home", "/Users/kp11"); 
    java.lang.System.setProperty("user.language", "en"); 
    java.lang.System.setProperty("user.name", "kp11"); 
    java.lang.System.setProperty("user.timezone", ""); 
    java.lang.System.setProperty("log4j.configuration", "SUT.log4j.properties"); 
  }

  private static void initializeClasses() {
    org.evosuite.runtime.classhandling.ClassStateSupport.initializeClasses(CoveragePanel_ESTest_scaffolding.class.getClassLoader() ,
      "uk.ac.sanger.artemis.io.EntryInformationException",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.components.AddMenu",
      "htsjdk.samtools.util.Log$LogLevel",
      "org.apache.batik.gvt.event.GraphicsNodeEvent",
      "org.apache.xalan.templates.ElemIf",
      "org.apache.xalan.templates.ElemCallTemplate",
      "org.apache.xalan.templates.ElemWithParam",
      "uk.ac.sanger.artemis.OptionChangeEvent",
      "uk.ac.sanger.artemis.components.filetree.RemoteFileNode",
      "org.apache.xpath.objects.XRTreeFrag",
      "uk.ac.sanger.artemis.plot.GCDeviationAlgorithm",
      "uk.ac.sanger.artemis.components.EntryEdit$CommitButton",
      "org.apache.log4j.Level",
      "uk.ac.sanger.artemis.components.RunMenu",
      "org.apache.batik.anim.dom.SVGOMDocument",
      "org.apache.batik.bridge.InterruptedBridgeException",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "org.apache.xalan.templates.XSLTVisitor",
      "uk.ac.sanger.artemis.components.FeatureDisplay",
      "uk.ac.sanger.artemis.components.variant.VCFview",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xpath.objects.XNodeSet",
      "org.apache.xpath.XPath",
      "uk.ac.sanger.artemis.EntryChangeListener",
      "htsjdk.samtools.TextTagCodec",
      "uk.ac.sanger.artemis.sequence.MarkerChangeListener",
      "org.apache.batik.css.engine.CSSEngineUserAgent",
      "org.apache.batik.bridge.ScriptSecurity",
      "org.apache.batik.bridge.BridgeException",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "uk.ac.sanger.artemis.Selectable",
      "org.apache.batik.dom.xbl.XBLManagerData",
      "org.apache.xml.utils.SAXSourceLocator",
      "uk.ac.sanger.artemis.io.RangeVector",
      "uk.ac.sanger.artemis.plot.NcAlgorithm",
      "org.apache.batik.svggen.DefaultExtensionHandler",
      "uk.ac.sanger.artemis.GotoEvent",
      "uk.ac.sanger.artemis.components.BasePlot",
      "org.apache.batik.anim.dom.AnimatedAttributeListener",
      "org.apache.xpath.objects.XObject",
      "org.apache.batik.bridge.ExternalResourceSecurity",
      "uk.ac.sanger.artemis.util.StringVector",
      "org.emboss.jemboss.JembossParams",
      "org.apache.batik.svggen.CachedImageHandler",
      "htsjdk.samtools.SamFlagField",
      "htsjdk.samtools.util.CloseableIterator",
      "htsjdk.samtools.AbstractSAMHeaderRecord",
      "uk.ac.sanger.artemis.components.ViewMenu",
      "org.apache.batik.anim.dom.AnimationTargetListener",
      "uk.ac.sanger.artemis.plot.CumulativeATSkewAlgorithm",
      "uk.ac.sanger.artemis.ChangeEvent",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel$1",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "htsjdk.samtools.SAMFileHeader$SortOrder",
      "org.apache.batik.bridge.GraphicsNodeBridge",
      "org.apache.xpath.WhitespaceStrippingElementMatcher",
      "org.apache.log4j.Hierarchy",
      "org.apache.batik.svggen.DOMGroupManager",
      "org.apache.batik.dom.AbstractNode",
      "org.apache.xml.utils.DefaultErrorHandler",
      "uk.ac.sanger.artemis.sequence.MarkerRange",
      "org.emboss.jemboss.gui.Browser$3",
      "org.emboss.jemboss.gui.Browser$4",
      "org.emboss.jemboss.gui.MemoryComboBox",
      "org.apache.batik.svggen.SVGCompositeDescriptor",
      "htsjdk.samtools.SAMFileSource",
      "uk.ac.sanger.artemis.plot.GCFrameAlgorithm",
      "org.apache.batik.svggen.SVGIDGenerator",
      "org.emboss.jemboss.gui.Browser$6",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.sequence.Strand",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.apache.batik.svggen.ErrorHandler",
      "org.emboss.jemboss.gui.Browser",
      "uk.ac.sanger.artemis.components.FeatureEdit",
      "uk.ac.sanger.artemis.components.GotoMenu",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "uk.ac.sanger.artemis.OptionChangeListener",
      "org.apache.xpath.ExtensionsProvider",
      "htsjdk.samtools.util.DateParser$InvalidDateException",
      "uk.ac.sanger.artemis.plot.PositionalAsymmetryAlgorithm",
      "org.apache.batik.dom.AbstractDocument",
      "uk.ac.sanger.artemis.io.Sequence",
      "htsjdk.samtools.util.BufferedLineReader",
      "htsjdk.samtools.seekablestream.SeekableStream",
      "org.apache.batik.gvt.filter.GraphicsNodeRable",
      "org.apache.xml.serializer.SerializerTrace",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "org.apache.batik.anim.AnimationEngine",
      "org.apache.log4j.helpers.OptionConverter",
      "htsjdk.samtools.TextCigarCodec",
      "uk.ac.sanger.artemis.components.EntryGroupDisplay",
      "uk.ac.sanger.artemis.components.SwingWorker",
      "htsjdk.samtools.Defaults",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.log4j.or.ObjectRenderer",
      "uk.ac.sanger.artemis.components.FeatureDisplay$11",
      "org.apache.xml.utils.XMLString",
      "htsjdk.samtools.SAMFileHeader",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "uk.ac.sanger.artemis.sequence.SequenceChangeListener",
      "org.apache.batik.gvt.RootGraphicsNode",
      "org.apache.batik.bridge.Mark",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "uk.ac.sanger.artemis.io.InvalidRelationException",
      "uk.ac.sanger.artemis.components.CanvasPanel",
      "org.apache.xpath.axes.PathComponent",
      "uk.ac.sanger.artemis.util.ReadOnlyException",
      "org.apache.log4j.Category",
      "uk.ac.sanger.artemis.components.GraphMenu",
      "org.apache.xpath.Expression",
      "htsjdk.samtools.SAMException",
      "uk.ac.sanger.artemis.EntryChangeEvent",
      "htsjdk.samtools.SAMBinaryTagAndValue",
      "org.apache.batik.bridge.GVTBuilder",
      "org.apache.batik.svggen.SVGDescriptor",
      "org.apache.batik.bridge.AbstractGraphicsNodeBridge",
      "org.apache.batik.dom.xbl.XBLManager",
      "uk.ac.sanger.artemis.Feature",
      "htsjdk.samtools.SAMRecord",
      "org.apache.batik.css.engine.CSSContext",
      "uk.ac.sanger.artemis.components.SelectMenu",
      "htsjdk.samtools.SAMTextHeaderCodec$HeaderRecordType",
      "org.apache.xalan.templates.DecimalFormatProperties",
      "org.apache.xpath.XPathVisitor",
      "htsjdk.samtools.SAMProgramRecord",
      "uk.ac.sanger.artemis.plot.Algorithm",
      "org.apache.log4j.spi.LoggerFactory",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.apache.log4j.spi.Configurator",
      "org.apache.xalan.templates.ElemVariablePsuedo",
      "org.apache.xalan.templates.XUnresolvedVariableSimple",
      "org.apache.batik.svggen.DefaultCachedImageHandler",
      "org.apache.batik.svggen.StyleHandler",
      "uk.ac.sanger.artemis.components.alignment.BamView$41",
      "htsjdk.samtools.SAMUtils",
      "uk.ac.sanger.artemis.components.Plot",
      "org.apache.batik.bridge.UserAgentAdapter",
      "org.apache.batik.svggen.ImageHandler",
      "uk.ac.sanger.artemis.EntrySource",
      "org.apache.batik.bridge.SVGBridgeExtension",
      "uk.ac.sanger.artemis.components.alignment.BamView$47",
      "org.apache.batik.bridge.AnimatableSVGBridge",
      "uk.ac.sanger.artemis.components.EntryGroupMenu",
      "org.apache.xalan.templates.Stylesheet",
      "htsjdk.samtools.SAMTextHeaderCodec",
      "uk.ac.sanger.artemis.components.SegmentBorder",
      "uk.ac.sanger.artemis.FeatureVector",
      "htsjdk.samtools.util.RuntimeIOException",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "htsjdk.samtools.SAMRecordFactory",
      "org.apache.batik.util.XMLConstants",
      "org.apache.batik.css.engine.CSSNavigableDocument",
      "org.apache.batik.svggen.SVGGraphics2D",
      "htsjdk.samtools.util.Locatable",
      "uk.ac.sanger.artemis.plot.KarlinSigAlgorithm",
      "htsjdk.samtools.util.LineReader",
      "org.apache.batik.dom.svg.SVGDocumentFactory",
      "uk.ac.sanger.artemis.plot.EntropyAlgorithm",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentEvent",
      "htsjdk.samtools.SAMSequenceDictionary",
      "org.apache.log4j.spi.AppenderAttachable",
      "org.apache.batik.script.InterpreterPool",
      "org.apache.batik.ext.awt.image.renderable.ClipRable",
      "org.apache.batik.dom.svg.IdContainer",
      "org.apache.batik.svggen.ImageHandlerBase64Encoder",
      "uk.ac.sanger.artemis.components.WriteMenu",
      "org.apache.log4j.Priority",
      "uk.ac.sanger.artemis.components.FeatureDisplay$12",
      "org.apache.batik.gvt.event.GraphicsNodeChangeEvent",
      "org.apache.batik.svggen.SVGFilterDescriptor",
      "uk.ac.sanger.artemis.components.IndexReferenceListener",
      "org.biojava.bio.BioException",
      "org.apache.batik.svggen.DOMTreeManager",
      "org.apache.log4j.LogManager",
      "org.apache.batik.bridge.AbstractSVGBridge",
      "org.apache.batik.bridge.UpdateManager",
      "uk.ac.sanger.artemis.components.alignment.SnpPanel",
      "uk.ac.sanger.artemis.io.DocumentEntry",
      "uk.ac.sanger.artemis.io.DatabaseDocumentEntry",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithTransparency",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.apache.batik.css.engine.CSSStylableElement",
      "uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm",
      "org.apache.batik.dom.ExtendedNode",
      "org.apache.batik.bridge.svg12.SVG12BridgeContext",
      "htsjdk.samtools.cram.ref.CRAMReferenceSource",
      "org.apache.log4j.or.RendererMap",
      "org.apache.batik.i18n.Localizable",
      "uk.ac.sanger.artemis.io.OutOfDateException",
      "org.apache.batik.gvt.CompositeGraphicsNode",
      "htsjdk.samtools.reference.ReferenceSequenceFile",
      "org.apache.batik.svggen.DefaultImageHandler",
      "org.apache.batik.dom.svg.SVGContext",
      "org.apache.batik.dom.util.DocumentFactory",
      "htsjdk.samtools.util.StringUtil",
      "uk.ac.sanger.artemis.components.EditMenu",
      "uk.ac.sanger.artemis.SelectionChangeEvent",
      "org.apache.xpath.axes.NodeSequence",
      "uk.ac.sanger.artemis.plot.BaseAlgorithm",
      "org.apache.batik.util.SVGConstants",
      "org.apache.xmlgraphics.java2d.GenericGraphicsDevice",
      "org.apache.batik.dom.AbstractStylableDocument",
      "org.apache.xpath.ExpressionOwner",
      "uk.ac.sanger.artemis.EntryGroupChangeEvent",
      "uk.ac.sanger.artemis.plot.ScaledChiAlgorithm",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "org.apache.xml.utils.QName",
      "htsjdk.samtools.SAMTagUtil",
      "org.apache.batik.gvt.GraphicsNode",
      "org.apache.batik.bridge.CursorManager",
      "uk.ac.sanger.artemis.Entry",
      "org.apache.xalan.templates.ElemForEach",
      "org.apache.batik.bridge.BridgeContext",
      "org.apache.batik.bridge.BridgeExtension",
      "org.apache.xml.dtm.DTMIterator",
      "org.apache.batik.bridge.Bridge",
      "org.biojava.bio.symbol.IllegalSymbolException",
      "org.apache.batik.bridge.UserAgent",
      "htsjdk.samtools.SAMReadGroupRecord",
      "org.apache.batik.util.ParsedURL",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "uk.ac.sanger.artemis.plot.MRIAlgorithm",
      "org.apache.xml.dtm.DTMManager",
      "htsjdk.samtools.SAMFlag",
      "org.apache.log4j.CategoryKey",
      "org.apache.batik.css.engine.CSSEngineListener",
      "uk.ac.sanger.artemis.plot.ATDeviationAlgorithm",
      "org.apache.batik.svggen.SVGGeneratorContext$GraphicContextDefaults",
      "org.apache.xpath.ExpressionNode",
      "org.apache.batik.dom.svg.LiveAttributeException",
      "uk.ac.sanger.artemis.ChangeListener",
      "uk.ac.sanger.artemis.components.EntryGroupPanel",
      "uk.ac.sanger.artemis.sequence.Marker",
      "uk.ac.sanger.artemis.components.alignment.BamFrame",
      "uk.ac.sanger.artemis.plot.CSCSAlgorithm",
      "org.apache.log4j.helpers.Loader",
      "org.apache.batik.bridge.SVGUseElementBridge",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.io.GFFDocumentEntry",
      "uk.ac.sanger.artemis.components.SelectionMenu",
      "org.apache.xpath.XPathContext",
      "org.apache.batik.dom.svg.LiveAttributeValue",
      "htsjdk.samtools.util.CollectionUtil",
      "org.apache.batik.bridge.DocumentBridge",
      "uk.ac.sanger.artemis.components.alignment.SAMRecordPredicate",
      "org.apache.batik.anim.dom.SVGAnimationTargetContext",
      "org.apache.batik.gvt.event.EventDispatcher",
      "org.apache.batik.svggen.ImageCacher$Embedded",
      "uk.ac.sanger.artemis.sequence.SequenceChangeEvent",
      "org.apache.xpath.XPathVisitable",
      "org.apache.log4j.spi.RootLogger",
      "org.emboss.jemboss.gui.Browser$JIconButton",
      "uk.ac.sanger.artemis.EntryVector",
      "org.apache.batik.svggen.ErrorConstants",
      "org.apache.batik.dom.xbl.NodeXBL",
      "uk.ac.sanger.artemis.components.alignment.BamView$Ruler",
      "org.apache.log4j.spi.RendererSupport",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.batik.dom.events.NodeEventTarget",
      "uk.ac.sanger.artemis.FeatureChangeListener",
      "uk.ac.sanger.artemis.FeatureChangeEvent",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.apache.batik.dom.AbstractParentNode",
      "org.apache.batik.util.CSSConstants",
      "org.apache.batik.svggen.GenericImageHandler",
      "htsjdk.samtools.util.Log",
      "htsjdk.samtools.SAMFileHeader$GroupOrder",
      "org.apache.batik.bridge.SVGAnimationEngine",
      "org.apache.xpath.objects.XRTreeFragSelectWrapper",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel",
      "org.apache.xml.utils.PrefixResolver",
      "org.apache.batik.gvt.AbstractGraphicsNode",
      "uk.ac.sanger.artemis.GotoEventSource",
      "org.apache.batik.bridge.ErrorConstants",
      "org.apache.batik.bridge.svg12.SVG12BridgeExtension",
      "org.apache.batik.svggen.ExtensionHandler",
      "org.apache.batik.bridge.DocumentLoader",
      "org.apache.batik.gvt.CanvasGraphicsNode",
      "org.apache.batik.svggen.SVGGraphics2DRuntimeException",
      "uk.ac.sanger.artemis.plot.GCWindowAlgorithm",
      "uk.ac.sanger.artemis.components.SequenceComboBox",
      "uk.ac.sanger.artemis.util.FTPSeekableStream",
      "uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm",
      "org.apache.log4j.Logger",
      "uk.ac.sanger.artemis.FeatureSegment",
      "org.apache.xalan.templates.ElemTemplate",
      "org.apache.xml.utils.UnImplNode",
      "uk.ac.sanger.artemis.EntryGroup",
      "org.apache.xml.dtm.DTMWSFilter",
      "org.apache.batik.util.Base64EncoderStream",
      "org.apache.batik.gvt.filter.Mask",
      "org.apache.log4j.helpers.LogLog",
      "htsjdk.samtools.SAMBinaryTagAndUnsignedArrayValue",
      "org.apache.batik.svggen.SVGGraphics2DIOException",
      "uk.ac.sanger.artemis.components.DisplayComponent",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentListener",
      "org.apache.batik.svggen.CachedImageHandlerBase64Encoder",
      "org.apache.log4j.spi.RepositorySelector",
      "org.apache.batik.ext.awt.image.renderable.Filter",
      "uk.ac.sanger.artemis.plot.AGWindowAlgorithm",
      "uk.ac.sanger.artemis.components.EntryEdit$8",
      "uk.ac.sanger.artemis.components.ZoomScrollBar",
      "uk.ac.sanger.artemis.components.EntryEdit$7",
      "uk.ac.sanger.artemis.components.alignment.LookSeqPanel",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.EntryGroupChangeListener",
      "org.apache.batik.svggen.SVGPaintDescriptor",
      "org.apache.batik.svggen.ImageCacher",
      "htsjdk.samtools.SAMHeaderRecordComparator",
      "uk.ac.sanger.artemis.ActionController",
      "htsjdk.samtools.SamFlagField$3",
      "htsjdk.samtools.SamFlagField$4",
      "uk.ac.sanger.artemis.io.Entry",
      "htsjdk.samtools.SamFlagField$5",
      "org.apache.batik.bridge.TextPainter",
      "org.apache.log4j.or.DefaultRenderer",
      "htsjdk.samtools.SamFlagField$1",
      "htsjdk.samtools.SamFlagField$2",
      "htsjdk.samtools.Cigar",
      "htsjdk.samtools.util.RuntimeEOFException",
      "org.apache.xalan.templates.ElemVariable",
      "org.apache.batik.bridge.FocusManager",
      "uk.ac.sanger.artemis.chado.ChadoTransactionManager",
      "uk.ac.sanger.artemis.components.alignment.BamView",
      "htsjdk.samtools.SAMFormatException",
      "uk.ac.sanger.artemis.plot.CumulativeGCSkewAlgorithm",
      "org.apache.log4j.spi.ThrowableRendererSupport",
      "org.apache.log4j.PropertyConfigurator",
      "uk.ac.sanger.artemis.util.Document",
      "htsjdk.samtools.ValidationStringency",
      "org.apache.batik.anim.dom.AnimatedLiveAttributeValue",
      "org.apache.commons.logging.impl.Log4JLogger",
      "htsjdk.samtools.SAMTag",
      "org.apache.batik.bridge.FontFamilyResolver",
      "uk.ac.sanger.artemis.Selection",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.batik.bridge.SVGDocumentBridge",
      "org.apache.xalan.templates.XSLTVisitable",
      "uk.ac.sanger.artemis.FeaturePredicate",
      "htsjdk.samtools.SAMValidationError",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$HeatMapLn",
      "uk.ac.sanger.artemis.components.SelectionInfoDisplay",
      "uk.ac.sanger.artemis.plot.ICDIAlgorithm",
      "org.apache.xpath.objects.XString",
      "org.apache.batik.bridge.BridgeUpdateHandler",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$2",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$1",
      "uk.ac.sanger.artemis.components.alignment.LineAttributes",
      "uk.ac.sanger.artemis.components.EntryEdit",
      "org.apache.xalan.templates.StylesheetRoot",
      "uk.ac.sanger.artemis.FeatureEnumeration",
      "uk.ac.sanger.artemis.components.FeatureList",
      "org.apache.batik.svggen.SVGShape",
      "uk.ac.sanger.artemis.SelectionChangeListener",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel$PopupListener",
      "org.apache.log4j.spi.LoggerRepository",
      "htsjdk.samtools.SAMSequenceRecord",
      "org.apache.batik.svggen.SVGSyntax",
      "org.apache.batik.css.engine.CSSEngineEvent",
      "uk.ac.sanger.artemis.GotoListener",
      "org.apache.xalan.transformer.TransformerImpl"
    );
  } 
  private static void initMocksToAvoidTimeoutsInTheTests() throws ClassNotFoundException { 
    mock(Class.forName("java.awt.event.KeyListener", false, CoveragePanel_ESTest_scaffolding.class.getClassLoader()));
    mock(Class.forName("java.awt.event.MouseWheelListener", false, CoveragePanel_ESTest_scaffolding.class.getClassLoader()));
  }

  private static void resetClasses() {
    org.evosuite.runtime.classhandling.ClassResetter.getInstance().setClassLoader(CoveragePanel_ESTest_scaffolding.class.getClassLoader()); 

    org.evosuite.runtime.classhandling.ClassStateSupport.resetClasses(
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$1",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$2",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$HeatMapLn",
      "uk.ac.sanger.artemis.components.alignment.CoveragePanel$3",
      "uk.ac.sanger.artemis.components.alignment.LineAttributes",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel$1",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel$PopupListener",
      "htsjdk.samtools.AbstractSAMHeaderRecord",
      "htsjdk.samtools.util.CollectionUtil",
      "htsjdk.samtools.util.Log$LogLevel",
      "htsjdk.samtools.util.Log",
      "htsjdk.samtools.SAMFileHeader",
      "htsjdk.samtools.SAMSequenceDictionary",
      "htsjdk.samtools.SAMTextHeaderCodec$HeaderRecordType",
      "htsjdk.samtools.SAMTextHeaderCodec",
      "htsjdk.samtools.TextTagCodec",
      "htsjdk.samtools.ValidationStringency",
      "htsjdk.samtools.util.StringUtil",
      "htsjdk.samtools.util.BufferedLineReader",
      "htsjdk.samtools.SamFlagField",
      "htsjdk.samtools.Defaults",
      "htsjdk.samtools.SAMHeaderRecordComparator",
      "htsjdk.samtools.SAMUtils",
      "htsjdk.samtools.SAMTag",
      "htsjdk.samtools.SAMRecord",
      "htsjdk.samtools.TextCigarCodec",
      "htsjdk.samtools.Cigar",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xalan.templates.DecimalFormatProperties",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "org.apache.batik.svggen.SVGIDGenerator",
      "org.apache.batik.svggen.DefaultExtensionHandler",
      "org.apache.batik.svggen.DefaultImageHandler",
      "org.apache.batik.svggen.ImageHandlerBase64Encoder",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "org.apache.batik.dom.AbstractDOMImplementation",
      "org.apache.batik.dom.ExtensibleDOMImplementation",
      "org.apache.batik.dom.util.HashTable",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AElementFactory",
      "org.apache.batik.dom.util.HashTable$Entry",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphDefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphItemElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateColorElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateMotionElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateTransformElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CircleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ClipPathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ColorProfileElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CursorElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefinitionSrcElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefsElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DescElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$EllipseElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeBlendElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeColorMatrixElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeComponentTransferElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeCompositeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeConvolveMatrixElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDiffuseLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDisplacementMapElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDistantLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFloodElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncAElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncRElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncGElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncBElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeGaussianBlurElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeImageElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeNodeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMorphologyElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeOffsetElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FePointLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpecularLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpotLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTileElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTurbulenceElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FilterElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceFormatElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceNameElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceSrcElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceUriElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ForeignObjectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphRefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$HkernElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ImageElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LineElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LinearGradientElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MarkerElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MaskElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MetadataElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MissingGlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MpathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PatternElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolygonElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolylineElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RadialGradientElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SetElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ScriptElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StopElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StyleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SvgElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SwitchElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SymbolElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextPathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TitleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TrefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TspanElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$UseElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ViewElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$VkernElementFactory",
      "org.apache.batik.i18n.LocalizableSupport",
      "org.apache.batik.i18n.LocaleGroup",
      "org.apache.batik.util.Service",
      "org.apache.batik.anim.dom.SVGDOMImplementation",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowDivElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowLineElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowParaElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionBreakElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionExcludeElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRootElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowSpanElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$HandlerElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$MultiImageElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SolidColorElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SubImageElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SubImageRefElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLXBLElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLDefinitionElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLTemplateElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLContentElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLHandlerGroupElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLImportElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLShadowTreeElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation",
      "org.apache.batik.dom.AbstractNode$1",
      "org.apache.batik.dom.AbstractNode",
      "org.apache.batik.dom.AbstractParentNode",
      "org.apache.batik.dom.AbstractDocument",
      "org.apache.batik.dom.AbstractStylableDocument",
      "org.apache.batik.anim.dom.SVGOMDocument",
      "org.apache.batik.anim.dom.SVG12OMDocument",
      "org.apache.batik.dom.xbl.GenericXBLManager",
      "org.apache.batik.anim.dom.SVGOMDocument$AnimAttrListener",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.batik.svggen.SVGGraphics2D",
      "org.apache.batik.ext.awt.g2d.GraphicContext",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "org.apache.batik.svggen.SVGShape",
      "org.apache.batik.svggen.SVGArc",
      "org.apache.batik.svggen.SVGEllipse",
      "org.apache.batik.svggen.SVGLine",
      "org.apache.batik.svggen.SVGPath",
      "org.apache.batik.svggen.SVGPolygon",
      "org.apache.batik.svggen.SVGRectangle",
      "org.apache.batik.svggen.DOMTreeManager",
      "org.apache.batik.xml.XMLCharacters",
      "org.apache.batik.xml.XMLUtilities",
      "org.apache.batik.dom.util.DOMUtilities",
      "org.apache.batik.dom.AbstractParentChildNode",
      "org.apache.batik.dom.AbstractElement",
      "org.apache.batik.anim.dom.AbstractElement",
      "org.apache.batik.util.DoublyIndexedTable",
      "org.apache.batik.anim.dom.TraitInformation",
      "org.apache.batik.util.DoublyIndexedTable$Entry",
      "org.apache.batik.anim.dom.SVGOMElement",
      "org.apache.batik.anim.dom.SVGStylableElement",
      "org.apache.batik.anim.dom.SVGGraphicsElement",
      "org.apache.batik.anim.dom.SVGOMGElement",
      "org.apache.batik.anim.dom.AbstractSVGAnimatedValue",
      "org.apache.batik.anim.dom.SVGOMAnimatedString",
      "org.apache.batik.anim.dom.SVGOMAnimatedTransformList",
      "org.apache.batik.anim.dom.SVGOMAnimatedBoolean",
      "org.apache.batik.svggen.AbstractSVGFilterConverter",
      "org.apache.batik.svggen.SVGBufferedImageOp",
      "org.apache.batik.svggen.SVGLookupOp",
      "org.apache.batik.svggen.SVGRescaleOp",
      "org.apache.batik.svggen.SVGConvolveOp",
      "org.apache.batik.svggen.SVGCustomBufferedImageOp",
      "org.apache.batik.svggen.SVGGraphicContextConverter",
      "org.apache.batik.svggen.AbstractSVGConverter",
      "org.apache.batik.svggen.SVGTransform",
      "org.apache.batik.svggen.SVGPaint",
      "org.apache.batik.svggen.SVGLinearGradient",
      "org.apache.batik.svggen.SVGTexturePaint",
      "org.apache.batik.svggen.SVGCustomPaint",
      "org.apache.batik.svggen.SVGColor",
      "org.apache.batik.svggen.SVGBasicStroke",
      "org.apache.batik.svggen.SVGComposite",
      "org.apache.batik.svggen.SVGAlphaComposite",
      "org.apache.batik.anim.dom.AttributeInitializer",
      "org.apache.batik.anim.dom.SVGOMFilterElement",
      "org.apache.batik.dom.AbstractElement$NamedNodeHashMap",
      "org.apache.batik.anim.dom.AbstractElement$ExtendedNamedNodeHashMap",
      "org.apache.batik.dom.AbstractAttr",
      "org.apache.batik.dom.AbstractAttrNS",
      "org.apache.batik.dom.GenericAttrNS",
      "org.apache.batik.dom.AbstractChildNode",
      "org.apache.batik.dom.AbstractCharacterData",
      "org.apache.batik.dom.AbstractText",
      "org.apache.batik.dom.GenericText",
      "org.apache.batik.dom.AbstractParentNode$ChildNodes",
      "org.apache.batik.dom.AbstractElement$Entry",
      "org.apache.batik.anim.dom.SVGOMAnimatedEnumeration",
      "org.apache.batik.anim.dom.AbstractSVGAnimatedLength",
      "org.apache.batik.anim.dom.SVGOMAnimatedLength",
      "org.apache.batik.dom.GenericAttr",
      "org.apache.batik.util.CleanerThread$SoftReferenceCleared",
      "org.apache.batik.dom.AbstractDocument$IdSoftRef",
      "org.apache.batik.util.CleanerThread",
      "org.apache.batik.anim.dom.SVGOMFilterPrimitiveStandardAttributes",
      "org.apache.batik.anim.dom.SVGOMFECompositeElement",
      "org.apache.batik.anim.dom.SVGOMAnimatedNumber",
      "org.apache.batik.anim.dom.SVGOMFEFloodElement",
      "org.apache.batik.anim.dom.SVGOMFEMergeElement",
      "org.apache.batik.anim.dom.SVGOMFEMergeNodeElement",
      "org.apache.batik.svggen.SVGCustomComposite",
      "org.apache.batik.svggen.SVGClipDescriptor",
      "org.apache.batik.svggen.SVGClip",
      "org.apache.batik.svggen.SVGRenderingHints",
      "org.apache.batik.svggen.SVGFont",
      "org.apache.batik.svggen.SVGPaintDescriptor",
      "org.apache.batik.svggen.SVGStrokeDescriptor",
      "org.apache.batik.svggen.SVGCompositeDescriptor",
      "org.apache.batik.svggen.SVGHintsDescriptor",
      "org.apache.batik.svggen.SVGFontDescriptor",
      "org.apache.batik.svggen.SVGGraphicContext",
      "org.apache.batik.svggen.DOMGroupManager",
      "org.apache.batik.bridge.UserAgentAdapter",
      "org.apache.xalan.templates.ElemIf",
      "org.apache.batik.anim.dom.BindableElement",
      "org.apache.batik.svggen.DefaultCachedImageHandler",
      "org.apache.batik.svggen.CachedImageHandlerBase64Encoder",
      "org.apache.batik.svggen.ImageCacher",
      "org.apache.batik.svggen.ImageCacher$Embedded",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithTransparency",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.sequence.Strand",
      "uk.ac.sanger.artemis.EntryVector",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.components.EntryEdit",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "org.apache.xalan.templates.ElemWhen",
      "org.apache.xml.res.XMLMessages",
      "org.apache.xpath.res.XPATHMessages",
      "org.apache.xalan.res.XSLMessages",
      "org.apache.xalan.res.XSLTErrorResources",
      "org.apache.xalan.res.XSLTErrorResources_en",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "uk.ac.sanger.artemis.io.LineGroup",
      "uk.ac.sanger.artemis.io.StreamSequence",
      "uk.ac.sanger.artemis.io.RawStreamSequence",
      "uk.ac.sanger.artemis.io.FastaStreamSequence",
      "uk.ac.sanger.artemis.io.Packing",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.io.EmblStreamSequence",
      "org.apache.xpath.Expression",
      "org.apache.xpath.operations.Variable",
      "org.apache.xpath.operations.VariableSafeAbsRef",
      "org.apache.batik.svggen.SVGGraphics2DRuntimeException",
      "uk.ac.sanger.artemis.io.BioJavaSequence",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "uk.ac.sanger.artemis.FilteredEntryGroup$1",
      "uk.ac.sanger.artemis.FilteredEntryGroup$2",
      "uk.ac.sanger.artemis.FilteredEntryGroup$3",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "org.apache.xalan.transformer.TransformerImpl",
      "org.apache.xml.utils.ObjectPool",
      "org.apache.xml.serializer.SerializerBase",
      "org.apache.xml.serializer.SecuritySupport",
      "org.apache.xml.serializer.SecuritySupport$4",
      "org.apache.xml.serializer.ToStream",
      "org.apache.xml.serializer.ToTextStream",
      "org.apache.xalan.templates.OutputProperties",
      "org.apache.xml.serializer.OutputPropertiesFactory",
      "org.apache.xml.serializer.OutputPropertiesFactory$1",
      "org.apache.xml.utils.ObjectVector",
      "org.apache.xml.utils.ObjectStack",
      "org.apache.xml.utils.NodeVector",
      "org.apache.xalan.transformer.KeyManager",
      "org.apache.xml.utils.BoolStack",
      "org.apache.xml.utils.DefaultErrorHandler",
      "org.apache.xalan.trace.TraceManager",
      "uk.ac.sanger.artemis.FeatureFromVectorPredicate",
      "uk.ac.sanger.artemis.FeaturePredicateConjunction",
      "uk.ac.sanger.artemis.FeaturePredicateVector",
      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "org.apache.xalan.templates.ElemChoose",
      "org.apache.batik.svggen.AbstractImageHandlerEncoder",
      "org.apache.batik.svggen.ImageHandlerPNGEncoder",
      "uk.ac.sanger.artemis.Entry",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "uk.ac.sanger.artemis.io.PublicDBDocumentEntry",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "uk.ac.sanger.artemis.util.Document",
      "org.apache.log4j.Category",
      "org.apache.log4j.Logger",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.spi.RootLogger",
      "org.apache.log4j.Priority",
      "org.apache.log4j.Level",
      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.log4j.or.RendererMap",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.helpers.OptionConverter",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.helpers.LogLog",
      "org.apache.log4j.PropertyConfigurator",
      "org.apache.log4j.LogManager",
      "org.apache.log4j.CategoryKey",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.util.FileDocument",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "org.apache.log4j.AppenderSkeleton",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.components.Splash",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.io.KeyVector",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "uk.ac.sanger.artemis.ExternalProgram",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "org.apache.batik.bridge.AbstractSVGBridge",
      "org.apache.batik.bridge.AnimatableSVGBridge",
      "org.apache.batik.bridge.AbstractGraphicsNodeBridge",
      "org.apache.batik.bridge.SVGUseElementBridge",
      "org.apache.batik.bridge.RhinoInterpreterFactory",
      "org.apache.batik.script.InterpreterPool",
      "org.apache.batik.bridge.DocumentLoader",
      "org.apache.batik.dom.util.SAXDocumentFactory",
      "org.apache.batik.anim.dom.SAXSVGDocumentFactory",
      "org.apache.batik.util.XMLResourceDescriptor",
      "org.apache.batik.bridge.BridgeContext",
      "org.apache.batik.util.Platform",
      "org.apache.batik.bridge.CursorManager",
      "org.apache.batik.util.SoftReferenceCache",
      "org.apache.batik.bridge.CursorManager$CursorCache",
      "org.apache.batik.bridge.UserAgentViewport",
      "org.apache.batik.dom.GenericDocumentType",
      "org.apache.batik.anim.dom.SVGOMSolidColorElement",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "htsjdk.samtools.SAMTagUtil",
      "uk.ac.sanger.artemis.components.genebuilder.ortholog.MatchPanel",
      "uk.ac.sanger.artemis.chado.ChadoTransactionManager",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "org.apache.batik.gvt.AbstractGraphicsNode",
      "org.apache.batik.gvt.CompositeGraphicsNode",
      "org.apache.batik.gvt.RootGraphicsNode",
      "org.apache.batik.gvt.CompositeGraphicsNode$Itr",
      "org.apache.xalan.transformer.XalanTransformState",
      "org.apache.xalan.processor.XSLTElementProcessor",
      "org.apache.xalan.processor.ProcessorTemplateElem",
      "org.apache.xalan.processor.ProcessorExsltFunction",
      "org.apache.batik.dom.GenericElement",
      "org.apache.xalan.templates.ElemApplyImport",
      "uk.ac.sanger.artemis.FeatureKeyQualifierPredicate",
      "org.apache.batik.gvt.CanvasGraphicsNode",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "org.apache.xalan.templates.ElemForEach",
      "org.apache.xalan.templates.ElemCallTemplate",
      "htsjdk.variant.vcf.VCFHeader",
      "htsjdk.tribble.util.ParsingUtils",
      "htsjdk.variant.vcf.VCFHeaderLine",
      "htsjdk.variant.vcf.VCFHeaderVersion",
      "uk.ac.sanger.artemis.io.BlastEntryInformation",
      "org.apache.batik.gvt.ImageNode",
      "org.apache.batik.ext.awt.image.renderable.AbstractRable",
      "org.apache.batik.ext.awt.image.renderable.RedRable",
      "org.apache.xalan.processor.TransformerFactoryImpl",
      "org.apache.xalan.processor.StylesheetHandler",
      "org.apache.xpath.functions.Function",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xpath.functions.FuncLast",
      "org.apache.xpath.functions.FuncPosition",
      "org.apache.xpath.functions.FunctionOneArg",
      "org.apache.xpath.functions.FuncCount",
      "org.apache.xpath.functions.FuncId",
      "org.apache.xpath.functions.Function2Args",
      "org.apache.xalan.templates.FuncKey",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncNamespace",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncNot",
      "org.apache.xpath.functions.FuncTrue",
      "org.apache.xpath.functions.FuncFalse",
      "org.apache.xpath.functions.FuncBoolean",
      "org.apache.xpath.functions.FuncLang",
      "org.apache.xpath.functions.FuncNumber",
      "org.apache.xpath.functions.FuncFloor",
      "org.apache.xpath.functions.FuncCeiling",
      "org.apache.xpath.functions.FuncRound",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.xpath.functions.FuncString",
      "org.apache.xpath.functions.FuncStartsWith",
      "org.apache.xpath.functions.FuncContains",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "org.apache.xpath.functions.FuncSubstringAfter",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.functions.Function3Args",
      "org.apache.xpath.functions.FuncTranslate",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.apache.xpath.functions.FuncConcat",
      "org.apache.xpath.functions.FuncSystemProperty",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "org.apache.xpath.functions.FuncExtElementAvailable",
      "org.apache.xpath.functions.FuncSubstring",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.xpath.functions.FuncDoclocation",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.xpath.compiler.FunctionTable",
      "org.apache.xalan.processor.XSLTElementDef",
      "org.apache.xalan.processor.XSLTSchema",
      "org.apache.xalan.processor.XSLTAttributeDef",
      "org.apache.xml.utils.StringToIntTable",
      "org.apache.xalan.processor.ProcessorCharacters",
      "org.apache.xalan.templates.ElemTextLiteral",
      "org.apache.xalan.processor.ProcessorLRE",
      "org.apache.xalan.templates.ElemUse",
      "org.apache.xalan.templates.ElemLiteralResult",
      "org.apache.xalan.processor.ProcessorUnknown",
      "org.apache.xalan.templates.ElemUnknown",
      "org.apache.xalan.templates.ElemValueOf",
      "org.apache.xml.utils.QName",
      "org.apache.xalan.templates.ElemCopyOf",
      "org.apache.xalan.transformer.DecimalToRoman",
      "org.apache.xalan.templates.ElemNumber",
      "org.apache.xalan.templates.ElemSort",
      "org.apache.xalan.templates.ElemWithParam",
      "org.apache.xalan.templates.ElemApplyTemplates",
      "org.apache.xalan.templates.ElemOtherwise",
      "org.apache.xalan.templates.ElemElement",
      "org.apache.xalan.templates.ElemAttribute",
      "org.apache.xalan.templates.ElemVariable",
      "org.apache.xalan.templates.ElemParam",
      "org.apache.xalan.processor.ProcessorText",
      "org.apache.xalan.templates.ElemText",
      "org.apache.xalan.templates.ElemPI",
      "org.apache.xalan.templates.ElemComment",
      "org.apache.xalan.templates.ElemCopy",
      "org.apache.xalan.templates.ElemMessage",
      "org.apache.xalan.templates.ElemFallback",
      "org.apache.xalan.templates.ElemTemplate",
      "org.apache.xalan.templates.ElemExsltFunction",
      "org.apache.xalan.processor.ProcessorExsltFuncResult",
      "org.apache.xalan.templates.ElemExsltFuncResult",
      "org.apache.xalan.processor.ProcessorInclude",
      "org.apache.xalan.processor.ProcessorImport",
      "org.apache.xalan.processor.ProcessorPreserveSpace",
      "org.apache.xalan.processor.ProcessorStripSpace",
      "org.apache.xalan.processor.ProcessorOutputElem",
      "org.apache.xalan.processor.ProcessorKey",
      "org.apache.xalan.processor.ProcessorDecimalFormat",
      "org.apache.xalan.processor.ProcessorAttributeSet",
      "org.apache.xalan.processor.ProcessorGlobalVariableDecl",
      "org.apache.xalan.processor.ProcessorGlobalParamDecl",
      "org.apache.xalan.processor.ProcessorTemplate",
      "org.apache.xalan.processor.ProcessorNamespaceAlias",
      "org.apache.xalan.templates.ElemExtensionScript",
      "org.apache.xalan.templates.ElemExtensionDecl",
      "org.apache.xalan.processor.ProcessorStylesheetElement",
      "org.apache.xalan.processor.ProcessorStylesheetDoc",
      "org.apache.xalan.templates.FuncDocument",
      "org.apache.xalan.templates.FuncFormatNumb",
      "org.apache.xml.utils.NamespaceSupport2",
      "org.apache.xml.utils.Context2",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.xpath.XPath",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xpath.compiler.OpMap",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.xpath.compiler.Lexer",
      "org.apache.xpath.compiler.OpMapVector",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xpath.axes.WalkerFactory",
      "org.apache.xpath.objects.XObject",
      "org.apache.xpath.objects.XNumber",
      "org.apache.xpath.patterns.NodeTest",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.xpath.axes.ChildIterator",
      "org.apache.xpath.axes.IteratorPool",
      "org.apache.xpath.patterns.StepPattern",
      "org.apache.xpath.patterns.UnionPattern",
      "org.apache.xpath.axes.SelfIteratorNoPredicate",
      "uk.ac.sanger.artemis.plot.Algorithm",
      "uk.ac.sanger.artemis.plot.BaseAlgorithm",
      "uk.ac.sanger.artemis.plot.GCWindowAlgorithm",
      "uk.ac.sanger.artemis.components.Plot",
      "uk.ac.sanger.artemis.components.BasePlot",
      "org.emboss.jemboss.JembossParams",
      "org.emboss.jemboss.gui.Browser",
      "org.apache.xalan.templates.WhiteSpaceInfo",
      "org.apache.xalan.processor.WhitespaceInfoPaths",
      "org.apache.xalan.templates.ElemVariablePsuedo",
      "org.apache.batik.bridge.SVGDocumentBridge",
      "htsjdk.samtools.SAMFlag",
      "htsjdk.samtools.util.CoordMath",
      "htsjdk.samtools.SAMValidationError",
      "htsjdk.samtools.SAMSequenceRecord",
      "org.apache.xalan.templates.ElemExtensionCall",
      "org.apache.xml.dtm.DTMManager",
      "org.apache.xpath.XPathContext",
      "org.apache.xml.utils.IntVector",
      "org.apache.xml.utils.IntStack",
      "org.apache.xml.utils.XMLStringFactory",
      "org.apache.xpath.objects.XMLStringFactoryImpl",
      "org.apache.xml.dtm.ObjectFactory",
      "org.apache.xml.dtm.SecuritySupport",
      "org.apache.xml.dtm.SecuritySupport$4",
      "org.apache.xml.dtm.SecuritySupport$7",
      "org.apache.xml.dtm.SecuritySupport$1",
      "org.apache.xml.dtm.SecuritySupport$2",
      "org.apache.xml.dtm.SecuritySupport$3",
      "org.apache.xml.dtm.SecuritySupport$6",
      "org.apache.xml.dtm.ref.DTMManagerDefault",
      "org.apache.xml.dtm.ref.ExtendedType",
      "org.apache.xml.dtm.ref.ExpandedNameTable",
      "org.apache.xml.dtm.ref.ExpandedNameTable$HashEntry",
      "org.apache.xpath.SourceTreeManager",
      "org.apache.xpath.XPathContext$XPathExpressionContext",
      "org.apache.xpath.VariableStack",
      "org.apache.commons.logging.impl.Log4JLogger",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "org.apache.xml.utils.ListingErrorHandler",
      "org.apache.batik.svggen.ImageHandlerJPEGEncoder",
      "org.apache.xalan.transformer.StackGuard",
      "org.apache.batik.dom.GenericDOMImplementation",
      "uk.ac.sanger.artemis.components.SelectionViewer",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "org.apache.xml.serializer.ToUnknownStream",
      "org.apache.xml.serializer.AttributesImplSerializer",
      "org.apache.xml.serializer.ElemContext",
      "org.apache.xml.serializer.ToXMLStream",
      "org.apache.xml.serializer.ToStream$BoolStack",
      "org.apache.xml.serializer.EncodingInfo",
      "org.apache.xml.serializer.CharInfo",
      "org.apache.xml.serializer.CharInfo$1",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.NamespaceMappings$Stack",
      "org.apache.xml.serializer.NamespaceMappings$MappingRecord",
      "org.apache.batik.util.HaltingThread",
      "org.apache.xml.res.XMLErrorResources",
      "org.apache.xml.res.XMLErrorResources_en",
      "org.apache.batik.svggen.SVGGeneratorContext$GraphicContextDefaults",
      "org.apache.batik.ext.awt.image.renderable.FloodRable8Bit",
      "org.apache.batik.ext.awt.image.AbstractLight",
      "org.apache.batik.ext.awt.image.DistantLight",
      "org.apache.batik.ext.awt.image.renderable.AbstractColorInterpolationRable",
      "org.apache.batik.ext.awt.image.renderable.SpecularLightingRable8Bit",
      "uk.ac.sanger.artemis.components.alignment.AbstractGraphPanel$2",
      "uk.ac.sanger.artemis.components.filetree.RemoteFileNode",
      "org.apache.batik.ext.awt.image.renderable.ColorMatrixRable8Bit",
      "org.apache.batik.ext.awt.image.renderable.FilterAsAlphaRable",
      "org.apache.batik.ext.awt.image.renderable.ConvolveMatrixRable8Bit",
      "org.apache.batik.bridge.ConcreteTextLayoutFactory",
      "org.apache.batik.bridge.BasicTextPainter",
      "org.apache.batik.bridge.StrokingTextPainter",
      "htsjdk.samtools.SAMProgramRecord",
      "org.apache.batik.gvt.RasterImageNode",
      "org.apache.batik.bridge.SVGAnimationElementBridge",
      "org.apache.batik.bridge.SVGAnimateElementBridge",
      "org.apache.batik.bridge.SVGAnimateColorElementBridge",
      "org.apache.batik.ext.awt.image.rendered.RenderedImageCachableRed",
      "uk.ac.sanger.artemis.FeaturePatternPredicate"
    );
  }
}
