/**
 * Scaffolding file used to store all the setups needed to run 
 * tests automatically generated by EvoSuite
 * Wed Sep 19 22:03:27 GMT 2018
 */

package uk.ac.sanger.artemis.components;

import org.evosuite.runtime.annotation.EvoSuiteClassExclude;
import org.junit.BeforeClass;
import org.junit.Before;
import org.junit.After;
import org.junit.AfterClass;
import org.evosuite.runtime.sandbox.Sandbox;
import org.evosuite.runtime.sandbox.Sandbox.SandboxMode;

@EvoSuiteClassExclude
public class ShortCut_ESTest_scaffolding {

  @org.junit.Rule 
  public org.evosuite.runtime.vnet.NonFunctionalRequirementRule nfr = new org.evosuite.runtime.vnet.NonFunctionalRequirementRule();

  private static final java.util.Properties defaultProperties = (java.util.Properties) java.lang.System.getProperties().clone(); 

  private org.evosuite.runtime.thread.ThreadStopper threadStopper =  new org.evosuite.runtime.thread.ThreadStopper (org.evosuite.runtime.thread.KillSwitchHandler.getInstance(), 3000);


  @BeforeClass 
  public static void initEvoSuiteFramework() { 
    org.evosuite.runtime.RuntimeSettings.className = "uk.ac.sanger.artemis.components.ShortCut"; 
    org.evosuite.runtime.GuiSupport.initialize(); 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfThreads = 100; 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfIterationsPerLoop = 10000; 
    org.evosuite.runtime.RuntimeSettings.mockSystemIn = true; 
    org.evosuite.runtime.RuntimeSettings.sandboxMode = org.evosuite.runtime.sandbox.Sandbox.SandboxMode.RECOMMENDED; 
    org.evosuite.runtime.sandbox.Sandbox.initializeSecurityManagerForSUT(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.init();
    setSystemProperties();
    initializeClasses();
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
  } 

  @AfterClass 
  public static void clearEvoSuiteFramework(){ 
    Sandbox.resetDefaultSecurityManager(); 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
  } 

  @Before 
  public void initTestCase(){ 
    threadStopper.storeCurrentThreads();
    threadStopper.startRecordingTime();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().initHandler(); 
    org.evosuite.runtime.sandbox.Sandbox.goingToExecuteSUTCode(); 
    setSystemProperties(); 
    org.evosuite.runtime.GuiSupport.setHeadless(); 
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    org.evosuite.runtime.agent.InstrumentingAgent.activate(); 
  } 

  @After 
  public void doneWithTestCase(){ 
    threadStopper.killAndJoinClientThreads();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().safeExecuteAddedHooks(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.reset(); 
    resetClasses(); 
    org.evosuite.runtime.sandbox.Sandbox.doneWithExecutingSUTCode(); 
    org.evosuite.runtime.agent.InstrumentingAgent.deactivate(); 
    org.evosuite.runtime.GuiSupport.restoreHeadlessMode(); 
  } 

  public static void setSystemProperties() {
 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
    java.lang.System.setProperty("file.encoding", "UTF-8"); 
    java.lang.System.setProperty("java.awt.headless", "true"); 
    java.lang.System.setProperty("java.io.tmpdir", "/var/folders/r3/l648tx8s7hn8ppds6z2bk5cc000h2n/T/"); 
    java.lang.System.setProperty("user.country", "GB"); 
    java.lang.System.setProperty("user.dir", "/Users/kp11/workspace/applications/Artemis-build-ci/Artemis"); 
    java.lang.System.setProperty("user.home", "/Users/kp11"); 
    java.lang.System.setProperty("user.language", "en"); 
    java.lang.System.setProperty("user.name", "kp11"); 
    java.lang.System.setProperty("user.timezone", ""); 
    java.lang.System.setProperty("log4j.configuration", "SUT.log4j.properties"); 
  }

  private static void initializeClasses() {
    org.evosuite.runtime.classhandling.ClassStateSupport.initializeClasses(ShortCut_ESTest_scaffolding.class.getClassLoader() ,
      "uk.ac.sanger.artemis.components.LogViewer$1",
      "uk.ac.sanger.artemis.io.EntryInformationException",
      "org.apache.log4j.or.ObjectRenderer",
      "uk.ac.sanger.artemis.components.database.DatabaseJPanel",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.gmod.schema.dao.CvDaoI",
      "org.apache.log4j.AppenderSkeleton",
      "org.apache.log4j.or.RendererMap",
      "uk.ac.sanger.artemis.util.WorkingGZIPInputStream",
      "uk.ac.sanger.artemis.chado.IBatisDAO",
      "org.apache.log4j.Logger",
      "uk.ac.sanger.artemis.ExternalProgram",
      "org.apache.log4j.Level",
      "uk.ac.sanger.artemis.io.Feature",
      "uk.ac.sanger.artemis.io.Key",
      "org.apache.log4j.helpers.LogLog",
      "org.apache.log4j.Category",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.util.ReadOnlyException",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.io.EntryInformation",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "org.apache.log4j.spi.RepositorySelector",
      "uk.ac.sanger.artemis.components.ShortCut",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.log4j.spi.LoggerFactory",
      "org.apache.log4j.CategoryKey",
      "org.apache.log4j.spi.Configurator",
      "uk.ac.sanger.artemis.ExternalProgramMonitor",
      "uk.ac.sanger.artemis.util.InputStreamProgressListener",
      "uk.ac.sanger.artemis.util.StringVector",
      "org.apache.log4j.or.DefaultRenderer",
      "uk.ac.sanger.artemis.util.ProgressInputStream",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.io.KeyVector",
      "org.gmod.schema.dao.SchemaDaoI",
      "org.apache.log4j.spi.ThrowableRendererSupport",
      "org.apache.log4j.PropertyConfigurator",
      "uk.ac.sanger.artemis.util.Document",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.ProvisionNode",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.Appender",
      "uk.ac.sanger.artemis.components.FileViewer",
      "uk.ac.sanger.artemis.chado.GmodDAO",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.io.QualifierInfoException",
      "org.gmod.schema.dao.SequenceDaoI",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.spi.OptionHandler",
      "org.apache.log4j.spi.RootLogger",
      "uk.ac.sanger.artemis.Logger",
      "org.gmod.schema.dao.OrganismDaoI",
      "org.apache.log4j.spi.AppenderAttachable",
      "org.apache.log4j.spi.ErrorHandler",
      "uk.ac.sanger.artemis.ExternalProgramException",
      "org.apache.log4j.spi.RendererSupport",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.util.FileDocument",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "org.apache.log4j.Priority",
      "org.apache.log4j.spi.LoggerRepository",
      "uk.ac.sanger.artemis.chado.JdbcDAO",
      "uk.ac.sanger.artemis.components.Splash$2",
      "org.apache.log4j.LogManager",
      "org.gmod.schema.dao.GeneralDaoI",
      "org.apache.log4j.helpers.OptionConverter",
      "org.gmod.schema.dao.BaseDaoI",
      "org.gmod.schema.dao.PubDaoI",
      "uk.ac.sanger.artemis.components.Splash"
    );
  } 

  private static void resetClasses() {
    org.evosuite.runtime.classhandling.ClassResetter.getInstance().setClassLoader(ShortCut_ESTest_scaffolding.class.getClassLoader()); 

    org.evosuite.runtime.classhandling.ClassStateSupport.resetClasses(
      "org.apache.log4j.Category",
      "org.apache.log4j.Logger",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.spi.RootLogger",
      "org.apache.log4j.Priority",
      "org.apache.log4j.Level",
      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.log4j.or.RendererMap",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.helpers.OptionConverter",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.helpers.LogLog",
      "org.apache.log4j.PropertyConfigurator",
      "org.apache.log4j.LogManager",
      "org.apache.log4j.CategoryKey",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.util.Document",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.util.FileDocument",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "org.apache.log4j.AppenderSkeleton",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.components.Splash",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.io.KeyVector",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "uk.ac.sanger.artemis.ExternalProgram",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.components.ShortCut",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithTransparency",
      "uk.ac.sanger.artemis.components.ActMain",
      "uk.ac.sanger.artemis.components.ArtemisMain",
      "uk.ac.sanger.artemis.components.database.DatabaseEntrySource",
      "org.apache.commons.logging.impl.Log4JLogger",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "uk.ac.sanger.artemis.io.BlastEntryInformation",
      "org.postgresql.util.SharedTimer",
      "org.postgresql.Driver",
      "org.hsqldb.jdbc.JDBCDriver",
      "uk.ac.sanger.artemis.components.filetree.FileList",
      "uk.ac.sanger.artemis.j2ssh.SshFileManager",
      "uk.ac.sanger.artemis.j2ssh.SshLogin",
      "uk.ac.sanger.artemis.util.TextDocument",
      "com.sshtools.j2ssh.io.ByteArrayReader",
      "org.biojava.bio.seq.db.SimpleIndex",
      "uk.ac.sanger.artemis.EntryVector",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "org.emboss.jemboss.JembossParams",
      "org.emboss.jemboss.gui.Browser",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "uk.ac.sanger.artemis.components.database.DatabaseJPanel$6",
      "uk.ac.sanger.artemis.components.database.DatabaseJPanel",
      "uk.ac.sanger.artemis.util.ByteBuffer",
      "uk.ac.sanger.artemis.util.DatabaseLocationParser"
    );
  }
}
