/**
 * Scaffolding file used to store all the setups needed to run 
 * tests automatically generated by EvoSuite
 * Wed Sep 19 21:10:27 GMT 2018
 */

package uk.ac.sanger.artemis.components.genebuilder;

import org.evosuite.runtime.annotation.EvoSuiteClassExclude;
import org.junit.BeforeClass;
import org.junit.Before;
import org.junit.After;
import org.junit.AfterClass;
import org.evosuite.runtime.sandbox.Sandbox;
import org.evosuite.runtime.sandbox.Sandbox.SandboxMode;

@EvoSuiteClassExclude
public class ProteinMapPanel_ESTest_scaffolding {

  @org.junit.Rule 
  public org.evosuite.runtime.vnet.NonFunctionalRequirementRule nfr = new org.evosuite.runtime.vnet.NonFunctionalRequirementRule();

  private static final java.util.Properties defaultProperties = (java.util.Properties) java.lang.System.getProperties().clone(); 

  private org.evosuite.runtime.thread.ThreadStopper threadStopper =  new org.evosuite.runtime.thread.ThreadStopper (org.evosuite.runtime.thread.KillSwitchHandler.getInstance(), 3000);


  @BeforeClass 
  public static void initEvoSuiteFramework() { 
    org.evosuite.runtime.RuntimeSettings.className = "uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel"; 
    org.evosuite.runtime.GuiSupport.initialize(); 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfThreads = 100; 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfIterationsPerLoop = 10000; 
    org.evosuite.runtime.RuntimeSettings.mockSystemIn = true; 
    org.evosuite.runtime.RuntimeSettings.sandboxMode = org.evosuite.runtime.sandbox.Sandbox.SandboxMode.RECOMMENDED; 
    org.evosuite.runtime.sandbox.Sandbox.initializeSecurityManagerForSUT(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.init();
    setSystemProperties();
    initializeClasses();
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
  } 

  @AfterClass 
  public static void clearEvoSuiteFramework(){ 
    Sandbox.resetDefaultSecurityManager(); 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
  } 

  @Before 
  public void initTestCase(){ 
    threadStopper.storeCurrentThreads();
    threadStopper.startRecordingTime();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().initHandler(); 
    org.evosuite.runtime.sandbox.Sandbox.goingToExecuteSUTCode(); 
    setSystemProperties(); 
    org.evosuite.runtime.GuiSupport.setHeadless(); 
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    org.evosuite.runtime.agent.InstrumentingAgent.activate(); 
  } 

  @After 
  public void doneWithTestCase(){ 
    threadStopper.killAndJoinClientThreads();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().safeExecuteAddedHooks(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.reset(); 
    resetClasses(); 
    org.evosuite.runtime.sandbox.Sandbox.doneWithExecutingSUTCode(); 
    org.evosuite.runtime.agent.InstrumentingAgent.deactivate(); 
    org.evosuite.runtime.GuiSupport.restoreHeadlessMode(); 
  } 

  public static void setSystemProperties() {
 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
    java.lang.System.setProperty("file.encoding", "UTF-8"); 
    java.lang.System.setProperty("java.awt.headless", "true"); 
    java.lang.System.setProperty("java.io.tmpdir", "/var/folders/r3/l648tx8s7hn8ppds6z2bk5cc000h2n/T/"); 
    java.lang.System.setProperty("user.country", "GB"); 
    java.lang.System.setProperty("user.dir", "/Users/kp11/workspace/applications/Artemis-build-ci/Artemis"); 
    java.lang.System.setProperty("user.home", "/Users/kp11"); 
    java.lang.System.setProperty("user.language", "en"); 
    java.lang.System.setProperty("user.name", "kp11"); 
    java.lang.System.setProperty("user.timezone", ""); 
    java.lang.System.setProperty("log4j.configuration", "SUT.log4j.properties"); 
  }

  private static void initializeClasses() {
    org.evosuite.runtime.classhandling.ClassStateSupport.initializeClasses(ProteinMapPanel_ESTest_scaffolding.class.getClassLoader() ,
      "org.apache.xml.serializer.WriterToUTF8Buffered",
      "com.ibatis.common.jdbc.SimpleDataSource$SimplePooledConnection",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.ConditionalTagHandler",
      "org.biojava.bio.seq.io.SymbolTokenization$TokenType",
      "org.biojava.bio.seq.db.IDMaker$ByURN",
      "org.biojava.bio.seq.ByHierarchy",
      "org.apache.xalan.res.XSLTErrorResources",
      "com.ibatis.sqlmap.client.extensions.ParameterSetter",
      "org.apache.xalan.templates.ElemIf",
      "uk.ac.sanger.artemis.OptionChangeEvent",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox",
      "org.apache.xpath.objects.XRTreeFrag",
      "com.ibatis.common.xml.Nodelet",
      "org.apache.xalan.extensions.ExtensionsTable",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "uk.ac.sanger.artemis.components.SelectionInfoDisplay$1",
      "com.ibatis.sqlmap.engine.type.BlobTypeHandlerCallback",
      "org.apache.xalan.templates.XSLTVisitor",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xpath.objects.XNodeSet",
      "org.apache.xpath.XPath",
      "com.sshtools.j2ssh.SshClient",
      "uk.ac.sanger.artemis.EntryChangeListener",
      "uk.ac.sanger.artemis.plot.CoilFeatureAlgorithm",
      "org.biojava.utils.ListTools$Triplet",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$AlphabetHandler$1",
      "uk.ac.sanger.artemis.Selectable",
      "org.apache.batik.dom.xbl.XBLManagerData",
      "com.ibatis.common.xml.NodeletParser",
      "com.ibatis.sqlmap.engine.datasource.DataSourceFactory",
      "net.sf.cglib.core.LocalVariablesSorter$1",
      "org.apache.log4j.spi.Filter",
      "org.apache.xml.serializer.ToHTMLStream",
      "uk.ac.sanger.artemis.io.RangeVector",
      "org.biojava.bio.seq.FramedFeature$ReadingFrame",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowLineElementFactory",
      "htsjdk.variant.variantcontext.GenotypesContext",
      "htsjdk.variant.vcf.VCFIDHeaderLine",
      "org.biojava.bio.seq.io.CharacterTokenization",
      "uk.ac.sanger.artemis.plot.NcAlgorithm",
      "com.ibatis.sqlmap.engine.mapping.statement.UpdateStatement",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.components.genebuilder.BasicGeneBuilderFrame",
      "net.sf.cglib.core.AbstractClassGenerator",
      "uk.ac.sanger.artemis.io.GenbankDocumentEntry",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SetElementFactory",
      "org.gmod.schema.sequence.Synonym",
      "com.ibatis.common.beans.SetFieldInvoker",
      "org.gmod.schema.sequence.FeatureCvTermProp",
      "org.biojava.bio.seq.io.SequenceBuilderFactory",
      "org.apache.xpath.operations.UnaryOperation",
      "org.biojava.bio.seq.FeatureFilter$AnnotationContains",
      "uk.ac.sanger.artemis.components.genebuilder.BasicProteinMapPanel",
      "org.apache.batik.dom.AbstractParentNode$ElementsByTagName",
      "org.biojava.bio.seq.FeatureFilter$ByDescendant",
      "uk.ac.sanger.artemis.sequence.MarkerRange",
      "org.biojava.utils.Changeable",
      "org.biojava.bio.symbol.EmptyLocation",
      "org.apache.xalan.templates.ElemOtherwise",
      "uk.ac.sanger.artemis.FeaturePatternPredicate",
      "com.ibatis.common.util.PaginatedList",
      "org.apache.xalan.templates.WhiteSpaceInfo",
      "org.apache.xalan.templates.ElemTextLiteral",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.biojava.utils.stax.DelegationManager",
      "org.biojava.bio.seq.StrandedFeature",
      "org.apache.xpath.functions.WrongNumberArgsException",
      "net.sf.cglib.core.ReflectUtils",
      "org.biojava.bio.symbol.IllegalAlphabetException",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionExcludeElementFactory",
      "org.apache.xalan.processor.ProcessorNamespaceAlias",
      "uk.ac.sanger.artemis.sequence.MarkerInternal",
      "org.apache.batik.gvt.filter.GraphicsNodeRable",
      "org.biojava.bio.symbol.AbstractTranslationTable",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "org.gmod.schema.dao.GeneralDaoI",
      "net.sf.cglib.core.LocalVariablesSorter",
      "org.apache.log4j.helpers.OptionConverter",
      "com.ibatis.sqlmap.client.SqlMapExecutor",
      "org.biojava.bio.symbol.Edit",
      "org.apache.batik.css.parser.ExtendedParser",
      "com.ibatis.sqlmap.client.SqlMapException",
      "uk.ac.sanger.artemis.io.MiscLineGroup",
      "uk.ac.sanger.artemis.components.FeatureDisplay$10",
      "uk.ac.sanger.artemis.components.FeatureDisplay$11",
      "org.biojava.bio.seq.db.IllegalIDException",
      "org.apache.xml.utils.XMLString",
      "org.apache.batik.css.parser.Parser",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SymbolElementFactory",
      "org.apache.batik.gvt.RootGraphicsNode",
      "uk.ac.sanger.artemis.components.ZoomScrollBar$1",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "uk.ac.sanger.artemis.io.InvalidRelationException",
      "org.apache.xalan.templates.ElemSort",
      "org.apache.xalan.transformer.DecimalToRoman",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsEqualTagHandler",
      "org.biojava.bio.seq.impl.FeatureImpl$1",
      "uk.ac.sanger.artemis.components.genebuilder.cv.CVPanel",
      "org.biojava.bio.Annotation",
      "org.biojava.bio.symbol.IntegerAlphabet$IntegerSymbol",
      "org.apache.log4j.Category",
      "uk.ac.sanger.artemis.io.LocationParseException",
      "org.apache.xpath.operations.Gt",
      "org.biojava.bio.seq.io.StreamParser",
      "org.biojava.bio.seq.FeatureFilter$ByAncestor",
      "org.biojava.bio.symbol.SimpleSymbol",
      "org.apache.batik.svggen.SVGDescriptor",
      "org.apache.batik.dom.xbl.XBLManager",
      "org.apache.xml.serializer.ElemDesc",
      "net.sf.cglib.core.ClassInfo",
      "org.apache.xpath.XPathVisitor",
      "org.biojava.utils.ChangeEvent",
      "uk.ac.sanger.artemis.util.URLDocument",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.gmod.schema.pub.Pub",
      "uk.ac.sanger.artemis.io.ChadoCanonicalGene",
      "net.sf.cglib.core.EmitUtils$9",
      "net.sf.cglib.core.EmitUtils$8",
      "net.sf.cglib.core.EmitUtils$7",
      "org.biojava.bio.symbol.SimpleCrossProductAlphabet",
      "org.biojava.bio.seq.DNATools",
      "org.apache.xpath.functions.FuncPosition",
      "org.biojava.bio.seq.RNATools$1",
      "uk.ac.sanger.artemis.components.SegmentBorder",
      "org.apache.batik.css.engine.CSSNavigableDocumentListener",
      "net.sf.cglib.core.ClassNameReader$1",
      "org.biojava.bio.BioRuntimeException",
      "com.ibatis.sqlmap.engine.type.ByteTypeHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextElementFactory",
      "org.apache.batik.util.XMLConstants",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.BaseTagHandler",
      "org.apache.batik.css.engine.CSSNavigableDocument",
      "org.apache.xalan.res.XSLMessages",
      "org.biojava.bio.seq.homol.SimilarityPairFeature",
      "htsjdk.samtools.util.Locatable",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ImageElementFactory",
      "org.gmod.schema.utils.propinterface.PropertyI",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentEvent",
      "uk.ac.sanger.artemis.chado.FeatureForUpdatingResidues",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolygonElementFactory",
      "org.apache.log4j.spi.AppenderAttachable",
      "com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate",
      "org.biojava.bio.seq.FeatureFilter$ContainedByLocation",
      "uk.ac.sanger.artemis.editor.ScrollPanel",
      "uk.ac.sanger.artemis.io.GFF3AttributeAggregator",
      "org.apache.batik.dom.svg.IdContainer",
      "org.apache.xpath.axes.WalkingIteratorSorted",
      "uk.ac.sanger.artemis.util.PushBackException",
      "com.ibatis.sqlmap.engine.exchange.DataExchange",
      "com.ibatis.sqlmap.engine.mapping.sql.SqlChild",
      "org.apache.xpath.operations.Div",
      "uk.ac.sanger.artemis.components.FeatureDisplay$12",
      "org.biojava.utils.ParseErrorListener",
      "org.biojava.utils.SingletonList",
      "org.biojava.bio.BioException",
      "uk.ac.sanger.artemis.SimpleEntryGroup$FeatureEnumerator",
      "com.ibatis.sqlmap.engine.builder.xml.XmlParserState",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.batik.svggen.DOMTreeManager",
      "net.sf.cglib.asm.AnnotationVisitor",
      "com.ibatis.sqlmap.engine.exchange.JavaBeanDataExchange",
      "com.ibatis.sqlmap.engine.builder.xml.XMLSqlSource",
      "com.ibatis.sqlmap.engine.mapping.parameter.ParameterMapping",
      "org.apache.xml.serializer.ToSAXHandler",
      "org.biojava.bio.seq.FramedFeature$Template",
      "com.ibatis.sqlmap.engine.exchange.BaseDataExchange",
      "net.sf.cglib.asm.ClassVisitor",
      "net.sf.cglib.core.ClassEmitter$FieldInfo",
      "uk.ac.sanger.artemis.util.WorkingGZIPInputStream",
      "com.ibatis.sqlmap.engine.mapping.statement.MappedStatement",
      "org.apache.batik.anim.dom.SVG12DOMImplementation",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsNotPropertyAvailableTagHandler",
      "org.biojava.utils.ChangeType$1",
      "htsjdk.samtools.reference.ReferenceSequenceFile",
      "org.apache.xml.utils.res.CharArrayWrapper",
      "org.biojava.bio.seq.io.AbstractGenEmblFileFormer",
      "org.apache.batik.dom.svg.SVGContext",
      "uk.ac.sanger.artemis.editor.Annotation",
      "org.postgresql.util.SharedTimer",
      "org.apache.xpath.functions.FuncDoclocation",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsLessThanTagHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FePointLightElementFactory",
      "uk.ac.sanger.artemis.SelectionChangeEvent",
      "org.biojava.utils.ChangeAdapter",
      "uk.ac.sanger.artemis.plot.BaseAlgorithm",
      "org.apache.batik.util.SVGConstants",
      "uk.ac.sanger.artemis.io.Key",
      "org.apache.xalan.processor.ProcessorUnknown",
      "org.apache.xalan.processor.ProcessorOutputElem",
      "org.apache.xalan.templates.ElemForEach",
      "com.ibatis.sqlmap.engine.transaction.Transaction",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.batik.anim.dom.SVGOMDocument$AnimAttrListener",
      "uk.ac.sanger.artemis.io.FeatureHeader",
      "net.sf.cglib.beans.BulkBeanEmitter",
      "uk.ac.sanger.artemis.components.filetree.FileList",
      "com.ibatis.common.xml.NodeletParser$1",
      "org.apache.batik.util.ParsedURL",
      "org.apache.xml.dtm.DTMManager",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GElementFactory",
      "uk.ac.sanger.artemis.chado.Graph",
      "com.ibatis.sqlmap.engine.type.ClobTypeHandlerCallback",
      "org.apache.xalan.templates.ElemMessage",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "org.apache.batik.css.parser.ParseException",
      "uk.ac.sanger.artemis.plot.ATDeviationAlgorithm",
      "org.apache.xml.serializer.WriterToASCI",
      "org.biojava.bio.seq.io.WordTokenization",
      "org.apache.xalan.processor.XSLTElementDef",
      "uk.ac.sanger.artemis.ChangeListener",
      "com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransactionConfig",
      "uk.ac.sanger.artemis.io.FeatureTree",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ScriptElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PathElementFactory",
      "org.apache.xpath.operations.Lte",
      "net.sf.cglib.core.KeyFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncRElementFactory",
      "org.apache.xalan.processor.TransformerFactoryImpl",
      "org.apache.batik.svggen.AbstractImageHandlerEncoder",
      "org.biojava.bio.seq.impl.SimpleFeature",
      "org.postgresql.util.ExpressionProperties",
      "com.ibatis.sqlmap.engine.datasource.SimpleDataSourceFactory",
      "uk.ac.sanger.artemis.components.genebuilder.ButtonPanel",
      "org.biojava.bio.seq.GappedSequence",
      "net.sf.cglib.core.EmitUtils",
      "org.biojava.bio.symbol.Alignment",
      "org.biojava.bio.seq.impl.SimpleRestrictionSite",
      "org.apache.log4j.MDC",
      "net.sf.cglib.core.CollectionUtils",
      "org.apache.batik.svggen.SVGLine",
      "net.sf.cglib.core.TypeUtils",
      "com.ibatis.sqlmap.engine.cache.lru.LruCacheController",
      "org.apache.batik.anim.dom.SVGDOMImplementation$EllipseElementFactory",
      "org.gmod.schema.dao.SequenceDaoI",
      "uk.ac.sanger.artemis.sequence.SequenceChangeEvent",
      "org.apache.xpath.XPathVisitable",
      "com.ibatis.sqlmap.engine.mapping.result.ResultMapping",
      "org.biojava.bio.seq.StrandedFeature$Template",
      "org.apache.xalan.templates.ElemText",
      "org.biojava.bio.seq.impl.AssembledSymbolList",
      "org.apache.batik.dom.xbl.NodeXBL",
      "com.sshtools.j2ssh.transport.HostKeyVerification",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.biojava.bio.symbol.Symbol",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsNotParameterPresentTagHandler",
      "org.apache.batik.dom.AbstractParentNode",
      "uk.ac.sanger.artemis.editor.FastaListener",
      "org.apache.batik.util.CSSConstants",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLTemplateElementFactory",
      "org.gmod.schema.sequence.FeatureCvTerm",
      "org.apache.batik.css.parser.DefaultConditionFactory",
      "org.biojava.bio.seq.FramedFeature",
      "org.apache.xpath.axes.AxesWalker",
      "org.apache.xml.utils.PrefixResolver",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsParameterPresentTagHandler",
      "org.biojava.bio.seq.AbstractFeatureHolder",
      "org.apache.xalan.processor.ProcessorText",
      "com.ibatis.sqlmap.engine.config.MappedStatementConfig",
      "org.biojava.utils.ListTools",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsEmptyTagHandler",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$AlphabetHandler",
      "uk.ac.sanger.artemis.io.DatabaseStreamFeature",
      "org.biojava.bio.seq.FeatureFilter$ByAnnotation",
      "uk.ac.sanger.artemis.util.CacheHashMap",
      "com.ibatis.common.xml.NodeletException",
      "org.biojava.bio.seq.FeatureFilter$ByComponentName",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.SqlTagHandler",
      "net.sf.cglib.core.EmitUtils$ParameterTyper",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xalan.templates.OutputProperties",
      "net.sf.cglib.asm.ByteVector",
      "org.apache.xpath.functions.FuncString",
      "org.biojava.bio.symbol.AlphabetManager$ImmutableWellKnownAlphabetWrapper",
      "uk.ac.sanger.artemis.io.LocationLexer",
      "org.apache.batik.dom.util.CSSStyleDeclarationFactory",
      "org.apache.batik.svggen.SVGGraphics2DIOException",
      "org.apache.xalan.templates.ElemValueOf",
      "net.sf.cglib.beans.BulkBean$BulkBeanKey",
      "org.apache.xpath.functions.FuncSubstring",
      "uk.ac.sanger.artemis.components.ZoomScrollBar",
      "uk.ac.sanger.artemis.io.StreamSequence",
      "uk.ac.sanger.artemis.io.GFF3AttributeBuilder",
      "com.ibatis.sqlmap.engine.config.SqlMapConfiguration",
      "org.apache.xpath.objects.XBoolean",
      "org.apache.xpath.operations.Operation",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.components.LogViewer",
      "com.ibatis.common.beans.MethodInvoker",
      "org.biojava.bio.symbol.AbstractRangeLocation",
      "org.apache.xpath.axes.OneStepIteratorForward",
      "uk.ac.sanger.artemis.j2ssh.SshLogin",
      "org.biojava.bio.seq.impl.SimpleRemoteFeature$DBResolver",
      "org.apache.xalan.templates.ElemPI",
      "htsjdk.tribble.TribbleException$InvalidHeader",
      "org.apache.xpath.axes.ChildIterator",
      "uk.ac.sanger.artemis.util.Document",
      "org.biojava.bio.seq.io.ParseException",
      "org.biojava.bio.seq.FeatureFilter$HasAnnotation",
      "org.apache.xalan.templates.ElemFallback",
      "uk.ac.sanger.artemis.components.FileViewer",
      "org.apache.batik.css.engine.value.ShorthandManager",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.biojava.bio.seq.FeatureRealizer",
      "org.apache.xalan.processor.ProcessorExsltFuncResult",
      "uk.ac.sanger.artemis.FeaturePredicateVector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ViewElementFactory",
      "org.apache.xalan.templates.XSLTVisitable",
      "uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel",
      "org.biojava.bio.seq.io.SequenceFormat",
      "net.sf.cglib.core.ProcessArrayCallback",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefsElementFactory",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "uk.ac.sanger.artemis.components.SelectionInfoDisplay",
      "uk.ac.sanger.artemis.plot.ICDIAlgorithm",
      "org.biojava.bio.seq.RemoteFeature$Region",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLDefinitionElementFactory",
      "net.sf.cglib.asm.ClassReader",
      "org.apache.log4j.spi.LoggerRepository",
      "com.ibatis.common.beans.ProbeException",
      "org.apache.xalan.templates.ElemAttribute",
      "com.ibatis.sqlmap.engine.impl.ExtendedSqlMapClient",
      "org.apache.batik.dom.GenericDocument",
      "com.ibatis.common.beans.Probe",
      "uk.ac.sanger.artemis.chado.DbSqlConfig",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MissingGlyphElementFactory",
      "uk.ac.sanger.artemis.io.GFFMisc",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncAElementFactory",
      "com.ibatis.sqlmap.engine.scope.StatementScope",
      "org.apache.xml.serializer.ToHTMLStream$Trie$Node",
      "org.apache.batik.dom.AbstractChildNode",
      "org.biojava.bio.seq.projection.ProjectionContext",
      "uk.ac.sanger.artemis.chado.IBatisDAO",
      "org.apache.batik.i18n.LocalizableSupport",
      "org.biojava.bio.seq.io.GenbankXmlFormat$GenbankXmlHandler",
      "uk.ac.sanger.artemis.plot.GCDeviationAlgorithm",
      "uk.ac.sanger.artemis.io.StreamQualifier",
      "org.apache.batik.anim.dom.SVGOMDocument",
      "org.apache.xpath.operations.Number",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "uk.ac.sanger.artemis.io.FuzzyRange",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownAtomicSymbol",
      "org.biojava.bio.symbol.AbstractReversibleTranslationTable",
      "org.apache.xml.dtm.DTMFilter",
      "org.biojava.bio.seq.io.SeqIOAdapter",
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      "org.apache.xml.serializer.SerializerTrace",
      "net.sf.cglib.core.AbstractClassGenerator$1",
      "org.apache.xpath.operations.Gte",
      "uk.ac.sanger.artemis.components.Splash$2",
      "com.ibatis.sqlmap.engine.exchange.DataExchangeFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeImageElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRootElementFactory",
      "org.gmod.schema.dao.BaseDaoI",
      "org.apache.xpath.functions.Function3Args",
      "org.biojava.bio.seq.SimpleFeatureRealizer$TemplateImpl",
      "uk.ac.sanger.artemis.components.SelectionViewer",
      "uk.ac.sanger.artemis.io.LazyQualifierValue",
      "org.apache.xalan.templates.StylesheetComposed",
      "com.ibatis.sqlmap.engine.type.SqlTimeTypeHandler",
      "org.biojava.bio.symbol.AbstractSymbol",
      "org.gmod.schema.cv.CvTerm",
      "uk.ac.sanger.artemis.sequence.SequenceChangeListener",
      "com.ibatis.sqlmap.engine.transaction.TransactionState",
      "org.biojava.bio.seq.DNATools$1",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsGreaterThanTagHandler",
      "org.apache.xpath.XPathException",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$CharacterTokenizationHandler",
      "org.biojava.utils.lsid.LifeScienceIdentifierParseException",
      "org.apache.xpath.Expression",
      "org.biojava.utils.ListTools$Mapper",
      "org.biojava.bio.seq.Up",
      "uk.ac.sanger.artemis.util.FastVector",
      "com.ibatis.common.beans.ComplexBeanProbe",
      "org.apache.log4j.helpers.ThreadLocalMap",
      "net.sf.cglib.core.KeyFactory$2",
      "org.biojava.bio.symbol.AbstractSimpleBasisSymbol",
      "net.sf.cglib.core.KeyFactory$1",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMorphologyElementFactory",
      "org.gmod.schema.sequence.FeatureDbXRef",
      "org.apache.xpath.functions.FuncBoolean",
      "org.apache.xalan.templates.ElemExtensionDecl",
      "uk.ac.sanger.artemis.Action",
      "org.apache.xml.serializer.ToStream$WritertoStringBuffer",
      "net.sf.cglib.core.ClassEmitter$3",
      "org.apache.xalan.processor.ProcessorInclude",
      "org.biojava.utils.stax.SAX2StAXAdaptor$S2SDelegationManager",
      "net.sf.cglib.core.ClassEmitter$1",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SvgElementFactory",
      "net.sf.cglib.core.Predicate",
      "uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry$IndexContig",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefinitionSrcElementFactory",
      "net.sf.cglib.core.ClassEmitter",
      "org.apache.xpath.axes.OneStepIterator",
      "uk.ac.sanger.artemis.components.Plot",
      "org.gmod.schema.sequence.FeatureCvTermDbXRef",
      "org.biojava.bio.seq.FramedFeature$1",
      "org.biojava.bio.symbol.AbstractManyToOneTranslationTable",
      "uk.ac.sanger.artemis.EntrySource",
      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "com.ibatis.sqlmap.engine.type.StringTypeHandler",
      "net.sf.cglib.core.ClassNameReader",
      "org.apache.batik.css.engine.CSSEngine",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphElementFactory",
      "org.apache.xml.serializer.CharInfo",
      "org.biojava.bio.seq.io.ProteinRefSeqFileFormer",
      "com.ibatis.sqlmap.engine.cache.CacheController",
      "org.apache.xml.serializer.CharInfo$1",
      "org.biojava.bio.molbio.RestrictionEnzyme",
      "com.ibatis.sqlmap.engine.accessplan.BaseAccessPlan",
      "org.apache.batik.svggen.SVGPolygon",
      "org.apache.batik.dom.util.HashTable$Entry",
      "org.apache.xml.serializer.TransformStateSetter",
      "net.sf.cglib.core.Local",
      "org.apache.xpath.patterns.NodeTest",
      "org.biojava.bio.symbol.IntegerAlphabet$SubIntegerAlphabet",
      "com.ibatis.sqlmap.engine.type.FloatTypeHandler",
      "uk.ac.sanger.artemis.plot.KarlinSigAlgorithm",
      "org.apache.xalan.templates.ElemApplyImport",
      "org.apache.batik.css.engine.SVG12CSSEngine",
      "uk.ac.sanger.artemis.plot.EntropyAlgorithm",
      "org.apache.xalan.processor.ProcessorExsltFunction",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceUriElementFactory",
      "com.sshtools.j2ssh.SshException",
      "org.apache.batik.ext.awt.image.renderable.ClipRable",
      "uk.ac.sanger.artemis.j2ssh.FTProgress",
      "net.sf.cglib.beans.BulkBean$Generator",
      "org.gmod.schema.cv.Cv",
      "org.apache.xml.serializer.ToUnknownStream",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "net.sf.cglib.core.DefaultNamingPolicy",
      "org.apache.batik.gvt.event.GraphicsNodeChangeEvent",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.DynamicTagHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ColorProfileElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DescElementFactory",
      "org.biojava.bio.symbol.SymbolList",
      "org.apache.xalan.templates.ElemExsltFuncResult",
      "com.ibatis.sqlmap.engine.type.TypeHandlerFactory$1",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$HandlerElementFactory",
      "org.apache.xml.serializer.ToHTMLSAXHandler",
      "net.sf.cglib.asm.FieldVisitor",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowParaElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeColorMatrixElementFactory",
      "net.sf.cglib.asm.MethodVisitor",
      "uk.ac.sanger.artemis.io.DatabaseDocumentEntry",
      "net.sf.cglib.core.DebuggingClassWriter",
      "org.apache.xpath.functions.Function2Args",
      "uk.ac.sanger.artemis.io.LocationParseNode",
      "uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm",
      "org.apache.batik.css.engine.CSSStylableElement",
      "org.apache.batik.dom.util.DOMUtilities$NSMap",
      "org.apache.batik.dom.ExtendedNode",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownAlphabet",
      "org.hsqldb.jdbc.JDBCDriver",
      "org.apache.xpath.functions.FuncConcat",
      "htsjdk.variant.vcf.VCFCompoundHeaderLine",
      "org.apache.batik.gvt.event.GraphicsNodeChangeListener",
      "org.apache.xml.utils.StringToIntTable",
      "com.ibatis.sqlmap.client.SqlMapClient",
      "uk.ac.sanger.artemis.io.ComparableFeature",
      "org.apache.batik.dom.AbstractAttrNS",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SwitchElementFactory",
      "org.biojava.bio.seq.io.GenbankXmlFormat",
      "org.apache.xml.utils.StringVector",
      "org.hsqldb.jdbc.JDBCDriver$1",
      "org.apache.xpath.ExpressionOwner",
      "uk.ac.sanger.artemis.Options",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$22",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$21",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$20",
      "org.apache.xpath.patterns.UnionPattern",
      "org.apache.xml.utils.FastStringBuffer",
      "org.biojava.bio.symbol.BasisSymbol",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeGaussianBlurElementFactory",
      "org.biojava.bio.seq.FeatureFilter$ByAnnotationType",
      "com.ibatis.sqlmap.engine.accessplan.PropertyAccessPlan",
      "org.biojava.bio.seq.RNATools",
      "org.apache.xalan.processor.ProcessorCharacters",
      "org.biojava.bio.seq.db.AbstractSequenceDB",
      "org.apache.xpath.domapi.XPathStylesheetDOM3Exception",
      "uk.ac.sanger.artemis.editor.HitInfo",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontElementFactory",
      "com.ibatis.sqlmap.engine.exchange.PrimitiveDataExchange",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "org.apache.xpath.operations.NotEquals",
      "org.apache.batik.svggen.SVGGeneratorContext$GraphicContextDefaults",
      "uk.ac.sanger.artemis.FeatureKeyQualifierPredicate",
      "org.apache.xpath.ExpressionNode",
      "com.ibatis.common.beans.GenericProbe",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$6",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$7",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$8",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$9",
      "org.apache.batik.css.engine.SVGCSSEngine",
      "uk.ac.sanger.artemis.chado.ClusterLazyQualifierValue",
      "uk.ac.sanger.artemis.plot.LineAttributes",
      "net.sf.cglib.core.GeneratorStrategy",
      "org.apache.log4j.helpers.Loader",
      "uk.ac.sanger.artemis.sequence.MarkerChangeEvent",
      "org.apache.xalan.processor.ProcessorStripSpace",
      "org.biojava.utils.stax.SAX2StAXAdaptor$HandlerBinding",
      "com.ibatis.sqlmap.engine.transaction.jdbc.JdbcTransaction",
      "com.ibatis.sqlmap.engine.type.TypeHandlerFactory",
      "uk.ac.sanger.artemis.components.KeyChoice",
      "org.biojava.bio.symbol.AbstractSymbolList$ListView",
      "uk.ac.sanger.artemis.io.RawStreamSequence",
      "org.apache.batik.dom.svg.LiveAttributeValue",
      "org.apache.batik.anim.dom.SVGDOMImplementation$VkernElementFactory",
      "uk.ac.sanger.artemis.io.QualifierInfoException",
      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "org.apache.xalan.templates.ElemCopyOf",
      "org.apache.xpath.axes.DescendantIterator",
      "org.biojava.utils.SmallMap",
      "org.apache.xml.serializer.utils.StringToIntTable",
      "org.apache.batik.svggen.SVGPath",
      "org.apache.batik.dom.events.EventSupport",
      "com.ibatis.common.xml.NodeletParser$Path",
      "org.apache.batik.svggen.GenericImageHandler",
      "org.biojava.bio.seq.RealizingFeatureHolder",
      "org.biojava.bio.molbio.RestrictionSite$Template",
      "org.biojava.bio.seq.db.IDMaker",
      "net.sf.cglib.beans.BulkBeanException",
      "org.apache.xpath.objects.XRTreeFragSelectWrapper",
      "org.apache.xalan.templates.FuncKey",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LinearGradientElementFactory",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$1",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$2",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$3",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$4",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$5",
      "org.apache.xpath.operations.Bool",
      "org.apache.batik.dom.AbstractElement",
      "org.apache.batik.dom.GenericAttrNS",
      "org.apache.batik.svggen.ExtensionHandler",
      "org.apache.batik.gvt.CanvasGraphicsNode",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncFloor",
      "org.gmod.schema.dao.CvDaoI",
      "uk.ac.sanger.artemis.plot.GCWindowAlgorithm",
      "htsjdk.tribble.TribbleException",
      "org.biojava.bio.seq.Feature",
      "uk.ac.sanger.artemis.io.ReadListener",
      "uk.ac.sanger.artemis.io.InvalidKeyException",
      "org.apache.xalan.processor.ProcessorGlobalParamDecl",
      "com.ibatis.sqlmap.client.SqlMapClientBuilder",
      "com.ibatis.sqlmap.engine.exchange.ComplexDataExchange",
      "net.sf.cglib.core.Signature",
      "com.ibatis.sqlmap.engine.type.SqlTimestampTypeHandler",
      "org.apache.xml.serializer.ToHTMLStream$Trie",
      "uk.ac.sanger.artemis.io.Packing",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeComponentTransferElementFactory",
      "org.biojava.bio.seq.Sequence",
      "com.ibatis.sqlmap.engine.mapping.result.Discriminator",
      "uk.ac.sanger.artemis.util.ZipFileDocument",
      "org.biojava.bio.seq.db.IDMaker$ByName",
      "org.biojava.utils.stax.SAX2StAXAdaptor$1",
      "uk.ac.sanger.artemis.util.ByteBuffer",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsNullTagHandler",
      "org.apache.xml.res.XMLMessages",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDiffuseLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateTransformElementFactory",
      "org.biojava.bio.seq.io.FastaFormat",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDistantLightElementFactory",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentListener",
      "org.biojava.utils.stax.StAXContentHandlerBase",
      "uk.ac.sanger.artemis.io.Range",
      "net.sf.cglib.asm.Frame",
      "uk.ac.sanger.artemis.EntryGroupChangeListener",
      "uk.ac.sanger.artemis.ActionController",
      "org.apache.xalan.templates.ElemParam",
      "uk.ac.sanger.artemis.io.BetweenRange",
      "uk.ac.sanger.artemis.ExternalProgramMonitor",
      "org.biojava.bio.seq.FeatureFilter$ShadowContainedByLocation",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$12",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$11",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$10",
      "org.apache.xalan.templates.ElemVariable",
      "org.biojava.bio.EmptyAnnotation",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsLessEqualTagHandler",
      "uk.ac.sanger.artemis.FeatureFromVectorPredicate",
      "uk.ac.sanger.artemis.plot.CumulativeGCSkewAlgorithm",
      "org.apache.xpath.XPathProcessorException",
      "com.ibatis.sqlmap.engine.type.DateOnlyTypeHandler",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$19",
      "org.apache.log4j.PropertyConfigurator",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$18",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$17",
      "com.ibatis.sqlmap.client.event.RowHandler",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$16",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$15",
      "org.apache.log4j.spi.ThrowableRenderer",
      "org.biojava.bio.symbol.AlphabetManager",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$14",
      "org.apache.batik.anim.dom.AnimatedLiveAttributeValue",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapParser$13",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AElementFactory",
      "org.apache.xml.utils.StopParseException",
      "uk.ac.sanger.artemis.Selection",
      "org.apache.xalan.processor.ProcessorPreserveSpace",
      "uk.ac.sanger.artemis.sequence.NoSequenceException",
      "org.apache.batik.dom.util.DOMUtilities",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "org.apache.xpath.axes.FilterExprWalker",
      "uk.ac.sanger.artemis.components.QualifierTextArea",
      "org.biojava.bio.symbol.SparseCrossProductAlphabet",
      "org.biojava.bio.seq.ComponentFeature",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphItemElementFactory",
      "org.apache.xpath.objects.XString",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownBasisSymbol",
      "org.biojava.bio.seq.impl.SimpleRemoteFeature",
      "uk.ac.sanger.artemis.io.BioJavaEntry",
      "org.biojava.bio.seq.impl.NewAssembledSymbolList",
      "org.apache.xalan.processor.XSLTAttributeDef",
      "uk.ac.sanger.artemis.components.Splash",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceElementFactory",
      "org.apache.xml.utils.BoolStack",
      "uk.ac.sanger.artemis.io.EntryInformationException",
      "net.sf.cglib.core.Transformer",
      "org.apache.batik.dom.ExtensibleDOMImplementation",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "org.apache.batik.gvt.event.GraphicsNodeEvent",
      "org.apache.xalan.templates.ElemCallTemplate",
      "org.apache.xalan.templates.ElemWithParam",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.DynamicSql",
      "org.biojava.bio.seq.FeatureFilter$ByPairwiseScore",
      "com.ibatis.sqlmap.engine.mapping.result.AutoResultMap",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphRefElementFactory",
      "uk.ac.sanger.artemis.components.filetree.RemoteFileNode",
      "org.biojava.bio.seq.impl.SimpleSimilarityPairFeature",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry$1",
      "org.biojava.bio.symbol.SimpleSymbolList$SSLIOListener",
      "org.biojava.bio.seq.RemoteFeature$Template",
      "org.apache.log4j.Level",
      "org.apache.batik.dom.AbstractParentChildNode",
      "org.apache.xml.serializer.SerializerBase",
      "uk.ac.sanger.artemis.components.FeatureDisplay",
      "uk.ac.sanger.artemis.io.EntryInformation",
      "org.apache.xpath.operations.Minus",
      "org.biojava.bio.seq.io.SeqIOListener",
      "org.biojava.utils.ChangeType",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ClipPathElementFactory",
      "uk.ac.sanger.artemis.io.ReadFormatException",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsNotNullTagHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$HkernElementFactory",
      "org.apache.batik.css.engine.value.ValueManager",
      "org.apache.xml.serializer.WriterChain",
      "org.gmod.schema.sequence.FeaturePub",
      "org.biojava.bio.seq.SimpleFeatureHolder",
      "com.ibatis.sqlmap.client.SqlMapTransactionManager",
      "org.biojava.bio.symbol.EmptyAlphabet",
      "org.gmod.schema.analysis.AnalysisFeature",
      "com.ibatis.sqlmap.engine.mapping.parameter.ParameterMap",
      "org.apache.batik.dom.AbstractAttr",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.SqlTag",
      "org.biojava.bio.seq.CircularView",
      "org.apache.xalan.processor.ProcessorKey",
      "org.gmod.schema.sequence.FeatureRelationship",
      "org.biojava.bio.seq.SimpleFeatureRealizer",
      "uk.ac.sanger.artemis.io.GenbankStreamFeature",
      "org.apache.batik.ext.awt.g2d.TransformStackElement",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeOffsetElementFactory",
      "net.sf.cglib.beans.BulkBean",
      "org.apache.xml.utils.DefaultErrorHandler",
      "com.ibatis.common.logging.Log",
      "org.emboss.jemboss.gui.MemoryComboBox",
      "org.biojava.bio.symbol.SimpleBasisSymbol",
      "com.ibatis.sqlmap.engine.mapping.result.ResultMap",
      "org.biojava.bio.seq.DNATools$DNAComplementTranslationTable",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "org.apache.xpath.compiler.OpMapVector",
      "uk.ac.sanger.artemis.ActionVector",
      "org.apache.batik.svggen.SVGIDGenerator",
      "uk.ac.sanger.artemis.sequence.Strand",
      "uk.ac.sanger.artemis.chado.GmodDAO",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.apache.batik.svggen.ErrorHandler",
      "org.emboss.jemboss.gui.Browser",
      "net.sf.cglib.core.ReflectUtils$4",
      "org.apache.xml.utils.WrappedRuntimeException",
      "org.apache.xml.serializer.ElemContext",
      "uk.ac.sanger.artemis.OptionChangeListener",
      "org.apache.xpath.ExtensionsProvider",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$MultiImageElementFactory",
      "net.sf.cglib.core.ReflectUtils$1",
      "net.sf.cglib.core.ReflectUtils$2",
      "org.apache.batik.dom.events.DocumentEventSupport$EventFactory",
      "org.apache.batik.xml.XMLCharacters",
      "net.sf.cglib.core.ReflectUtils$3",
      "com.ibatis.sqlmap.engine.transaction.IsolationLevel",
      "org.apache.batik.dom.AbstractDocument",
      "org.biojava.bio.symbol.LocationComparator",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeNodeElementFactory",
      "com.ibatis.sqlmap.engine.type.ShortTypeHandler",
      "uk.ac.sanger.artemis.util.LargeObjectDocument",
      "org.apache.xpath.operations.Equals",
      "uk.ac.sanger.artemis.io.GenbankMisc",
      "uk.ac.sanger.artemis.chado.JdbcDAO",
      "org.apache.batik.svggen.SVGEllipse",
      "org.apache.xml.utils.Context2",
      "org.biojava.utils.stax.StAXContentHandler",
      "uk.ac.sanger.artemis.components.SwingWorker",
      "uk.ac.sanger.artemis.util.RemoteFileDocument",
      "uk.ac.sanger.artemis.io.PublicDBStreamFeature",
      "net.sf.cglib.core.DefaultGeneratorStrategy",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceSrcElementFactory",
      "com.ibatis.sqlmap.engine.mapping.statement.StatementType",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.axes.WalkerFactory",
      "org.biojava.bio.seq.FeatureFilter$ShadowOverlapsLocation",
      "uk.ac.sanger.artemis.io.FastaStreamSequence",
      "org.apache.xpath.patterns.StepPattern",
      "uk.ac.sanger.artemis.io.FeatureEnumeration",
      "org.apache.xalan.templates.ElemCopy",
      "uk.ac.sanger.artemis.components.QualifierTextArea$2",
      "org.apache.xalan.transformer.TransformerIdentityImpl",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownTokenizationWrapper",
      "uk.ac.sanger.artemis.editor.DataViewInternalFrame",
      "org.biojava.utils.ChangeForwarder",
      "org.apache.xml.utils.NodeConsumer",
      "org.apache.xpath.axes.PathComponent",
      "com.ibatis.common.io.ReaderInputStream",
      "org.biojava.bio.symbol.GappedSymbolList",
      "org.apache.xml.utils.DOMHelper",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$9",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$8",
      "com.ibatis.sqlmap.engine.type.BigDecimalTypeHandler",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$5",
      "com.ibatis.sqlmap.engine.transaction.TransactionConfig",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$4",
      "org.apache.xpath.functions.FuncFalse",
      "uk.ac.sanger.artemis.EntryChangeEvent",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$7",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$6",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xml.serializer.ExtendedContentHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MetadataElementFactory",
      "org.biojava.bio.seq.FeatureFilter",
      "org.apache.xml.serializer.ExtendedLexicalHandler",
      "org.apache.xpath.functions.Function",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "uk.ac.sanger.artemis.io.DocumentFeature",
      "org.biojava.bio.SimpleAnnotation",
      "org.biojava.bio.symbol.IntegerAlphabet",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsNotEqualTagHandler",
      "org.apache.xalan.templates.DecimalFormatProperties",
      "org.apache.xpath.res.XPATHMessages",
      "uk.ac.sanger.artemis.plot.Algorithm",
      "com.ibatis.common.jdbc.SimpleDataSource",
      "org.biojava.bio.seq.impl.FeatureImpl",
      "org.apache.log4j.spi.Configurator",
      "uk.ac.sanger.artemis.io.MSPcrunchStreamFeature",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.utils.WrappedRuntimeException",
      "htsjdk.variant.variantcontext.VariantContextBuilder",
      "org.biojava.bio.seq.io.GenbankFileFormer",
      "org.apache.xmlgraphics.java2d.TransformStackElement",
      "org.gmod.schema.sequence.Feature",
      "org.biojava.bio.symbol.FiniteAlphabet",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateElementFactory",
      "org.gmod.schema.sequence.FeatureProp",
      "org.biojava.bio.seq.Down",
      "uk.ac.sanger.artemis.io.FeatureTree$FeatureEnumerator",
      "org.gmod.schema.utils.Rankable",
      "org.apache.xpath.functions.FuncCount",
      "com.ibatis.sqlmap.engine.accessplan.ComplexAccessPlan",
      "net.sf.cglib.core.ProcessSwitchCallback",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MarkerElementFactory",
      "com.ibatis.common.beans.ProbeFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CursorElementFactory",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.io.BioJavaSequence",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowDivElementFactory",
      "uk.ac.sanger.artemis.io.EmblStreamSequence",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "org.apache.xml.serializer.ToXMLStream",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$1",
      "org.biojava.bio.seq.io.CrossProductTokenization",
      "com.ibatis.sqlmap.engine.scope.ErrorContext",
      "org.apache.xml.serializer.EncodingInfo$InEncoding",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$3",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapConfigParser$2",
      "org.apache.batik.svggen.SVGGraphics2D",
      "htsjdk.tribble.TribbleException$InternalCodecException",
      "org.apache.xalan.processor.ProcessorStylesheetDoc",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xalan.templates.ElemExtensionCall",
      "org.biojava.bio.seq.FeatureHolder",
      "org.biojava.bio.symbol.FundamentalAtomicSymbol",
      "net.sf.cglib.asm.Edge",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$CharacterTokenizationHandler$MappingHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeElementFactory",
      "org.gmod.schema.dao.OrganismDaoI",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SolidColorElementFactory",
      "org.apache.batik.dom.ExtensibleDOMImplementation$ElementFactory",
      "uk.ac.sanger.artemis.FeaturePredicateConjunction",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "org.biojava.utils.Unchangeable",
      "com.ibatis.common.resources.Resources",
      "uk.ac.sanger.artemis.components.FeatureDisplay$7",
      "uk.ac.sanger.artemis.components.FeatureDisplay$8",
      "uk.ac.sanger.artemis.components.FeatureDisplay$3",
      "net.sf.cglib.core.AbstractClassGenerator$Source",
      "org.gmod.schema.sequence.FeatureLoc",
      "org.apache.log4j.LogManager",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$SymbolHandler",
      "org.biojava.bio.symbol.AlphabetIndex",
      "uk.ac.sanger.artemis.components.FeatureDisplay$6",
      "uk.ac.sanger.artemis.components.FeatureDisplay$1",
      "uk.ac.sanger.artemis.components.FeatureDisplay$2",
      "com.ibatis.common.logging.jakarta.JakartaCommonsLoggingImpl",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MaskElementFactory",
      "org.biojava.bio.seq.FeatureFilter$OnlyDescendants",
      "org.apache.xpath.functions.FuncStartsWith",
      "uk.ac.sanger.artemis.j2ssh.SshFileManager",
      "htsjdk.variant.vcf.VCFHeader",
      "org.biojava.bio.seq.FeatureFilter$ByFeature",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ForeignObjectElementFactory",
      "org.apache.xalan.processor.ProcessorLRE",
      "com.ibatis.sqlmap.engine.type.ByteArrayTypeHandler",
      "org.apache.log4j.or.RendererMap",
      "org.apache.xalan.templates.FuncFormatNumb",
      "org.apache.batik.gvt.CompositeGraphicsNode",
      "uk.ac.sanger.artemis.ExternalProgram",
      "com.ibatis.sqlmap.engine.exchange.ListDataExchange",
      "org.apache.batik.dom.util.HashTable",
      "uk.ac.sanger.artemis.io.EmblMisc",
      "org.biojava.bio.seq.io.GenbankFormat",
      "com.ibatis.sqlmap.engine.type.SqlDateTypeHandler",
      "uk.ac.sanger.artemis.io.PartialSequence",
      "org.apache.batik.dom.AbstractStylableDocument",
      "org.biojava.bio.seq.FeatureFilter$ByParent",
      "net.sf.cglib.asm.Handler",
      "uk.ac.sanger.artemis.plot.ScaledChiAlgorithm",
      "org.apache.xpath.axes.ReverseAxesWalker",
      "org.apache.xml.utils.QName",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFloodElementFactory",
      "uk.ac.sanger.artemis.Entry",
      "org.apache.xpath.axes.SubContextList",
      "org.apache.xml.dtm.ref.DTMTreeWalker",
      "org.apache.xml.dtm.DTMIterator",
      "uk.ac.sanger.artemis.components.genebuilder.GeneUtils",
      "org.biojava.utils.ClassTools",
      "org.apache.batik.dom.GenericDOMImplementation",
      "net.sf.cglib.core.Customizer",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionBreakElementFactory",
      "org.apache.xml.serializer.DOMSerializer",
      "uk.ac.sanger.artemis.io.EmblStreamFeature",
      "org.biojava.utils.cache.WeakValueHashMap",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox$ComboPopupMenuLister",
      "org.apache.xpath.compiler.OpMap",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "org.biojava.bio.symbol.IllegalSymbolException",
      "com.ibatis.sqlmap.engine.type.TypeHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphDefElementFactory",
      "com.ibatis.sqlmap.engine.mapping.parameter.InlineParameterMapParser",
      "htsjdk.variant.variantcontext.StructuralVariantType",
      "org.apache.xpath.operations.And",
      "uk.ac.sanger.artemis.util.InputStreamProgressListener",
      "uk.ac.sanger.artemis.io.LocationLexer$TokenEnumeration",
      "htsjdk.variant.variantcontext.Genotype",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "org.biojava.bio.symbol.TranslationTable",
      "org.apache.batik.svggen.ImageHandlerJPEGEncoder",
      "org.biojava.bio.symbol.CrossProductAlphabetIndex",
      "uk.ac.sanger.artemis.components.EntryGroupPanel",
      "org.biojava.bio.symbol.SimpleSymbolList$1",
      "org.biojava.bio.seq.impl.SimpleStrandedFeature",
      "com.ibatis.sqlmap.engine.execution.BatchException",
      "com.ibatis.sqlmap.engine.builder.xml.SqlStatementParser",
      "org.apache.xalan.templates.AVT",
      "com.sshtools.j2ssh.sftp.FileAttributes",
      "uk.ac.sanger.artemis.sequence.Marker",
      "org.biojava.bio.symbol.DoubleAlphabet",
      "uk.ac.sanger.artemis.plot.CSCSAlgorithm",
      "org.apache.xml.utils.DOM2Helper",
      "org.apache.log4j.ProvisionNode",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CircleElementFactory",
      "uk.ac.sanger.artemis.io.GFFDocumentEntry",
      "uk.ac.sanger.artemis.io.GFFStreamFeature",
      "org.apache.xalan.processor.StylesheetHandler",
      "org.biojava.bio.symbol.AtomicSymbol",
      "org.apache.xpath.XPathContext",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.IsGreaterEqualTagHandler",
      "org.apache.xalan.templates.ElemNumber",
      "org.biojava.bio.seq.FeatureFilter$BySequenceName",
      "com.ibatis.common.beans.Invoker",
      "org.apache.xml.utils.res.XResourceBundle",
      "net.sf.cglib.asm.Type",
      "uk.ac.sanger.artemis.editor.DataCollectionPane",
      "com.ibatis.sqlmap.engine.accessplan.EnhancedPropertyAccessPlan",
      "uk.ac.sanger.artemis.ExternalProgramException",
      "net.sf.cglib.core.MethodInfo",
      "org.apache.xalan.processor.ProcessorDecimalFormat",
      "org.apache.batik.css.parser.DefaultDocumentHandler",
      "uk.ac.sanger.artemis.components.variant.TabixReader$Iterator",
      "uk.ac.sanger.artemis.FeatureChangeEvent",
      "com.ibatis.sqlmap.engine.execution.SqlExecutor",
      "com.ibatis.sqlmap.engine.mapping.sql.raw.RawSql",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeBlendElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$UseElementFactory",
      "org.apache.xpath.NodeSetDTM",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateMotionElementFactory",
      "org.apache.xalan.templates.ElemExtensionScript",
      "uk.ac.sanger.artemis.io.LineGroup",
      "uk.ac.sanger.artemis.Entry$FeatureEnumerator",
      "com.ibatis.sqlmap.engine.mapping.sql.dynamic.elements.SqlTagContext",
      "com.ibatis.sqlmap.engine.type.BooleanTypeHandler",
      "org.apache.batik.svggen.SVGGraphicContext",
      "uk.ac.sanger.artemis.util.InputStreamProgressEvent",
      "com.ibatis.sqlmap.engine.mapping.statement.RowHandlerCallback",
      "org.postgresql.Driver",
      "uk.ac.sanger.artemis.GotoEventSource",
      "uk.ac.sanger.artemis.editor.CommonMenu",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLShadowTreeElementFactory",
      "org.biojava.utils.ChangeSupport",
      "org.biojava.bio.seq.io.AlternateTokenization",
      "org.apache.xpath.axes.AttributeIterator",
      "uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry",
      "com.ibatis.sqlmap.engine.transaction.BaseTransactionConfig",
      "org.apache.batik.svggen.SVGBufferedImageOp",
      "org.biojava.bio.symbol.AlphabetManager$1",
      "org.apache.log4j.Logger",
      "uk.ac.sanger.artemis.FeatureSegment",
      "org.apache.xpath.operations.Or",
      "com.ibatis.sqlmap.engine.mapping.statement.ExecuteListener",
      "com.ibatis.sqlmap.engine.type.IntegerTypeHandler",
      "org.biojava.bio.seq.homol.HomologyFeature",
      "uk.ac.sanger.artemis.EntryGroup",
      "org.apache.xml.dtm.DTMWSFilter",
      "uk.ac.sanger.artemis.io.Feature",
      "org.apache.batik.util.Base64EncoderStream",
      "org.biojava.bio.AbstractAnnotation",
      "org.biojava.bio.symbol.ManyToOneTranslationTable",
      "com.ibatis.sqlmap.engine.mapping.statement.SelectStatement",
      "com.ibatis.common.xml.NodeletUtils",
      "com.ibatis.sqlmap.engine.transaction.TransactionException",
      "com.ibatis.common.beans.GetFieldInvoker",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "org.biojava.bio.seq.SequenceIterator",
      "org.apache.xpath.functions.FuncRound",
      "org.biojava.bio.seq.io.SwissprotFileFormer",
      "org.apache.xml.serializer.SerializerConstants",
      "com.ibatis.common.logging.LogFactory",
      "com.ibatis.sqlmap.engine.type.ObjectTypeHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncBElementFactory",
      "com.ibatis.sqlmap.engine.type.BaseTypeHandler",
      "uk.ac.sanger.artemis.components.DisplayComponent",
      "org.biojava.bio.seq.db.SequenceDBLite",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator",
      "org.apache.log4j.spi.RepositorySelector",
      "org.biojava.utils.ListTools$SeriesList",
      "org.apache.batik.ext.awt.image.renderable.Filter",
      "com.ibatis.sqlmap.engine.type.CustomTypeHandler",
      "org.apache.batik.svggen.SVGGraphicContextConverter",
      "org.biojava.utils.ChangeListener$LoggingListener",
      "org.apache.xalan.templates.TemplateList",
      "uk.ac.sanger.artemis.io.ReadEvent",
      "htsjdk.samtools.reference.IndexedFastaSequenceFile",
      "htsjdk.variant.variantcontext.VariantContext",
      "uk.ac.sanger.artemis.io.Entry",
      "org.apache.xml.serializer.SecuritySupport$4",
      "uk.ac.sanger.artemis.util.LinePushBackReader",
      "org.biojava.utils.ParseErrorSource",
      "uk.ac.sanger.artemis.util.ProgressInputStream",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TitleElementFactory",
      "com.ibatis.sqlmap.engine.builder.xml.SqlMapClasspathEntityResolver",
      "com.ibatis.sqlmap.engine.accessplan.AccessPlan",
      "org.biojava.bio.seq.FeatureFilter$ByChild",
      "net.sf.cglib.asm.Attribute",
      "htsjdk.variant.vcf.VCFHeaderLine",
      "org.apache.xpath.operations.Mult",
      "net.sf.cglib.asm.ClassAdapter",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "org.apache.xalan.templates.ElemUnknown",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "uk.ac.sanger.artemis.chado.ChadoTransactionManager",
      "org.biojava.bio.symbol.LinearAlphabetIndex",
      "org.apache.xpath.functions.FuncTrue",
      "org.apache.xalan.extensions.ExtensionNamespacesManager",
      "org.apache.xpath.operations.Lt",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LineElementFactory",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.xalan.templates.KeyDeclaration",
      "com.ibatis.sqlmap.client.extensions.TypeHandlerCallback",
      "org.biojava.bio.symbol.Location",
      "org.gmod.schema.organism.Organism",
      "org.apache.xpath.operations.String",
      "org.apache.xpath.functions.FuncId",
      "org.biojava.bio.symbol.Alphabet",
      "org.biojava.bio.seq.io.EmblFileFormer",
      "com.ibatis.sqlmap.engine.config.ParameterMapConfig",
      "org.biojava.utils.ListTools$5",
      "net.sf.cglib.core.CodeGenerationException",
      "uk.ac.sanger.artemis.chado.ChadoTransaction",
      "org.apache.log4j.spi.HierarchyEventListener",
      "com.ibatis.sqlmap.engine.impl.SqlMapClientImpl",
      "org.gmod.schema.sequence.FeatureSynonym",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownGapSymbol",
      "org.apache.xalan.templates.ElemChoose",
      "uk.ac.sanger.artemis.io.QualifierLazyLoading",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "org.apache.xalan.res.XSLTErrorResources_en",
      "org.apache.xpath.operations.Neg",
      "org.biojava.bio.seq.io.GAMEFormat",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolylineElementFactory",
      "uk.ac.sanger.artemis.components.genebuilder.gff.BasicPropertiesPanel",
      "org.apache.xml.dtm.DTM",
      "org.apache.batik.gvt.ImageNode",
      "org.apache.batik.svggen.SVGShape",
      "uk.ac.sanger.artemis.SelectionChangeListener",
      "org.apache.batik.svggen.SVGSyntax",
      "org.apache.xalan.transformer.TransformerImpl"
    );
  } 

  private static void resetClasses() {
    org.evosuite.runtime.classhandling.ClassResetter.getInstance().setClassLoader(ProteinMapPanel_ESTest_scaffolding.class.getClassLoader()); 

    org.evosuite.runtime.classhandling.ClassStateSupport.resetClasses(
      "uk.ac.sanger.artemis.components.genebuilder.MapPanel",
      "uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel",
      "uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel$1",
      "uk.ac.sanger.artemis.components.genebuilder.ProteinMapPanel$2",
      "uk.ac.sanger.artemis.util.Document",
      "org.apache.log4j.Category",
      "org.apache.log4j.Logger",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.spi.RootLogger",
      "org.apache.log4j.Priority",
      "org.apache.log4j.Level",
      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.log4j.or.RendererMap",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.helpers.OptionConverter",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.helpers.LogLog",
      "org.apache.log4j.PropertyConfigurator",
      "org.apache.log4j.LogManager",
      "org.apache.log4j.CategoryKey",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.util.FileDocument",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "org.apache.log4j.AppenderSkeleton",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.components.Splash",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.io.KeyVector",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "uk.ac.sanger.artemis.ExternalProgram",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.components.genebuilder.GeneUtils",
      "uk.ac.sanger.artemis.components.QualifierTextArea",
      "uk.ac.sanger.artemis.editor.DataCollectionPane",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.io.Location",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "uk.ac.sanger.artemis.io.LocationParseNode",
      "uk.ac.sanger.artemis.io.RangeVector",
      "uk.ac.sanger.artemis.io.FuzzyRange",
      "uk.ac.sanger.artemis.io.LocationParseNodeVector",
      "uk.ac.sanger.artemis.io.MSPcrunchEntryInformation",
      "uk.ac.sanger.artemis.io.LineGroup",
      "uk.ac.sanger.artemis.io.SimpleDocumentFeature",
      "uk.ac.sanger.artemis.io.PublicDBStreamFeature",
      "uk.ac.sanger.artemis.io.QualifierVector",
      "uk.ac.sanger.artemis.io.StreamQualifier",
      "uk.ac.sanger.artemis.io.ReadFormatException",
      "uk.ac.sanger.artemis.io.QualifierParseException",
      "uk.ac.sanger.artemis.io.GFFStreamFeature",
      "uk.ac.sanger.artemis.io.BlastEntryInformation",
      "org.biojava.bio.seq.Feature$Template",
      "org.biojava.bio.seq.StrandedFeature$Template",
      "org.biojava.utils.AbstractChangeable",
      "org.biojava.bio.seq.impl.SimpleFeature",
      "org.biojava.bio.seq.impl.SimpleStrandedFeature",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "uk.ac.sanger.artemis.io.BlastDocumentEntry",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "uk.ac.sanger.artemis.io.ChadoCanonicalGene",
      "uk.ac.sanger.artemis.util.ReadOnlyException",
      "uk.ac.sanger.artemis.Entry",
      "uk.ac.sanger.artemis.sequence.NoSequenceException",
      "uk.ac.sanger.artemis.EntryVector",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "uk.ac.sanger.artemis.FilteredEntryGroup$1",
      "uk.ac.sanger.artemis.FilteredEntryGroup$2",
      "uk.ac.sanger.artemis.FilteredEntryGroup$3",
      "uk.ac.sanger.artemis.io.PublicDBDocumentEntry",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry$1",
      "uk.ac.sanger.artemis.Entry$FeatureEnumerator",
      "uk.ac.sanger.artemis.ChangeEvent",
      "uk.ac.sanger.artemis.EntryGroupChangeEvent",
      "uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry",
      "uk.ac.sanger.artemis.util.CacheHashMap",
      "uk.ac.sanger.artemis.io.GFFEntryInformation",
      "uk.ac.sanger.artemis.EntryChangeEvent",
      "uk.ac.sanger.artemis.io.EmblStreamFeature",
      "uk.ac.sanger.artemis.io.LocationLexer",
      "uk.ac.sanger.artemis.io.LocationLexer$TokenEnumeration",
      "uk.ac.sanger.artemis.io.Qualifier",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.Feature",
      "uk.ac.sanger.artemis.components.genebuilder.ortholog.MatchPanel",
      "org.biojava.bio.molbio.RestrictionSite$Template",
      "org.biojava.bio.seq.impl.SimpleRestrictionSite",
      "uk.ac.sanger.artemis.SimpleEntryGroup$FeatureEnumerator",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xalan.processor.XSLTElementProcessor",
      "org.apache.xalan.processor.ProcessorStylesheetDoc",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.batik.svggen.SVGGraphics2D",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "org.apache.batik.svggen.SVGIDGenerator",
      "org.apache.batik.svggen.SVGGraphics2DRuntimeException",
      "uk.ac.sanger.artemis.io.LocationParseException",
      "org.gmod.schema.organism.Organism",
      "org.gmod.schema.cv.CvTerm",
      "org.gmod.schema.sequence.Feature",
      "uk.ac.sanger.artemis.chado.FeatureLocLazyQualifierValue",
      "uk.ac.sanger.artemis.io.QualifierLazyLoading",
      "uk.ac.sanger.artemis.io.BioJavaEntry",
      "org.biojava.bio.seq.homol.SimilarityPairFeature$Template",
      "org.biojava.bio.seq.impl.SimpleSimilarityPairFeature",
      "org.biojava.bio.seq.FramedFeature$Template",
      "org.biojava.bio.seq.impl.SimpleFramedFeature",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "uk.ac.sanger.artemis.io.DatabaseStreamFeature",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "uk.ac.sanger.artemis.io.MSPcrunchStreamFeature",
      "org.apache.xalan.processor.ProcessorStylesheetElement",
      "org.apache.batik.svggen.DefaultExtensionHandler",
      "org.apache.batik.svggen.DefaultImageHandler",
      "org.apache.batik.svggen.ImageHandlerBase64Encoder",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "org.apache.batik.ext.awt.g2d.GraphicContext",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "org.apache.batik.svggen.SVGShape",
      "org.apache.batik.svggen.SVGArc",
      "org.apache.batik.svggen.SVGEllipse",
      "org.apache.batik.svggen.SVGLine",
      "org.apache.batik.svggen.SVGPath",
      "org.apache.batik.svggen.SVGPolygon",
      "org.apache.batik.svggen.SVGRectangle",
      "org.apache.batik.svggen.DOMTreeManager",
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      "org.apache.batik.dom.util.HashTable",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AElementFactory",
      "org.apache.batik.dom.util.HashTable$Entry",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphDefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphItemElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateColorElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateMotionElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateTransformElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CircleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ClipPathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ColorProfileElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CursorElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefinitionSrcElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefsElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DescElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$EllipseElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeBlendElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeColorMatrixElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeComponentTransferElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeCompositeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeConvolveMatrixElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDiffuseLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDisplacementMapElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDistantLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFloodElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncAElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncRElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncGElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncBElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeGaussianBlurElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeImageElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeNodeElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMorphologyElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeOffsetElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FePointLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpecularLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpotLightElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTileElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTurbulenceElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FilterElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceFormatElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceNameElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceSrcElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceUriElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ForeignObjectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphRefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$HkernElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ImageElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LineElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LinearGradientElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MarkerElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MaskElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MetadataElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MissingGlyphElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MpathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PatternElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolygonElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolylineElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RadialGradientElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SetElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ScriptElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StopElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StyleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SvgElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SwitchElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SymbolElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextPathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TitleElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TrefElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TspanElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$UseElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ViewElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$VkernElementFactory",
      "org.apache.batik.i18n.LocalizableSupport",
      "org.apache.batik.i18n.LocaleGroup",
      "org.apache.batik.util.Service",
      "org.apache.batik.anim.dom.SVGDOMImplementation",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowDivElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowLineElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowParaElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionBreakElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRegionExcludeElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowRootElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$FlowSpanElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$HandlerElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$MultiImageElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SolidColorElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SubImageElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$SubImageRefElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLXBLElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLDefinitionElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLTemplateElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLContentElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLHandlerGroupElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLImportElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation$XBLShadowTreeElementFactory",
      "org.apache.batik.anim.dom.SVG12DOMImplementation",
      "org.apache.batik.dom.AbstractNode$1",
      "org.apache.batik.dom.AbstractNode",
      "org.apache.batik.dom.AbstractParentNode",
      "org.apache.batik.dom.AbstractDocument",
      "org.apache.batik.dom.GenericDocument",
      "org.apache.batik.dom.xbl.GenericXBLManager",
      "uk.ac.sanger.artemis.util.ZipFileDocument",
      "org.biojava.bio.seq.io.GenbankFormat",
      "org.biojava.bio.seq.io.GenbankXmlFormat",
      "uk.ac.sanger.artemis.util.ProgressInputStream",
      "org.biojava.bio.seq.AbstractFeatureHolder",
      "org.biojava.bio.seq.MergeFeatureHolder",
      "org.biojava.bio.symbol.EmptyLocation",
      "org.biojava.bio.symbol.AbstractLocation",
      "org.biojava.bio.symbol.AbstractRangeLocation",
      "org.biojava.bio.symbol.RangeLocation",
      "org.biojava.bio.symbol.LocationComparator",
      "org.biojava.bio.symbol.Location",
      "org.biojava.utils.ChangeVetoException",
      "uk.ac.sanger.artemis.util.URLDocument",
      "com.ibatis.common.xml.NodeletException",
      "org.apache.xalan.processor.ProcessorTemplateElem",
      "org.apache.xalan.processor.ProcessorExsltFunction",
      "org.apache.xalan.templates.ElemApplyTemplates",
      "uk.ac.sanger.artemis.io.DocumentEntryAutosaveThread",
      "uk.ac.sanger.artemis.FeatureSegment",
      "uk.ac.sanger.artemis.util.TextDocument",
      "org.apache.batik.svggen.ImageHandlerJPEGEncoder",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox$ComboBoxRenderer",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox$ComboPopupMenuLister",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "uk.ac.sanger.artemis.sequence.MarkerRange",
      "uk.ac.sanger.artemis.components.filetree.RemoteFileNode",
      "uk.ac.sanger.artemis.components.genebuilder.BasicGeneBuilderFrame",
      "org.apache.batik.gvt.GraphicsNode",
      "org.apache.batik.svggen.SVGGeneratorContext$GraphicContextDefaults",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "uk.ac.sanger.artemis.FeaturePatternPredicate",
      "uk.ac.sanger.artemis.components.SelectionViewer",
      "htsjdk.variant.variantcontext.GenotypesContext",
      "htsjdk.variant.variantcontext.VariantContext$Validation",
      "htsjdk.variant.variantcontext.VariantContext",
      "uk.ac.sanger.artemis.chado.ClusterLazyQualifierValue",
      "org.apache.batik.gvt.RootGraphicsNode",
      "org.apache.xalan.processor.ProcessorLRE",
      "org.biojava.bio.seq.io.FastaFormat",
      "uk.ac.sanger.artemis.util.RemoteFileDocument",
      "uk.ac.sanger.artemis.io.EntryInformationException",
      "uk.ac.sanger.artemis.util.StringVector$1",
      "org.biojava.bio.seq.db.IDMaker$ByURN",
      "org.biojava.bio.seq.db.AbstractSequenceDB",
      "org.biojava.bio.seq.db.HashSequenceDB",
      "org.biojava.bio.seq.impl.SimpleRemoteFeature$DBResolver",
      "org.biojava.bio.seq.FeatureFilter$ByClass",
      "uk.ac.sanger.artemis.io.MSPcrunchDocumentEntry",
      "uk.ac.sanger.artemis.io.BioJavaFeature",
      "org.apache.xml.serializer.SerializerBase",
      "org.apache.xml.serializer.ToUnknownStream",
      "org.apache.xml.serializer.AttributesImplSerializer",
      "org.apache.xml.serializer.ElemContext",
      "org.apache.xml.serializer.SecuritySupport",
      "org.apache.xml.serializer.SecuritySupport$4",
      "org.apache.xml.serializer.ToStream",
      "org.apache.xml.serializer.ToXMLStream",
      "org.apache.xml.serializer.ToStream$BoolStack",
      "org.apache.xml.serializer.EncodingInfo",
      "org.apache.xml.serializer.CharInfo",
      "org.apache.xml.serializer.CharInfo$1",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.NamespaceMappings$Stack",
      "org.apache.xml.serializer.NamespaceMappings$MappingRecord",
      "org.apache.xalan.templates.ElemText",
      "uk.ac.sanger.artemis.components.SelectionInfoDisplay",
      "uk.ac.sanger.artemis.components.SelectionInfoDisplay$1",
      "org.apache.xalan.processor.ProcessorImport",
      "org.apache.xalan.processor.ProcessorExsltFuncResult",
      "org.apache.xalan.templates.ElemApplyImport",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "uk.ac.sanger.artemis.io.PartialSequence",
      "org.apache.xalan.templates.ElemVariable",
      "org.apache.xalan.templates.ElemParam",
      "org.biojava.bio.seq.io.GenpeptFormat",
      "uk.ac.sanger.artemis.io.InvalidKeyException",
      "org.apache.xalan.processor.TransformerFactoryImpl",
      "org.apache.xml.utils.DefaultErrorHandler",
      "org.apache.xalan.processor.StylesheetHandler",
      "org.apache.xpath.Expression",
      "org.apache.xpath.functions.Function",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xpath.functions.FuncLast",
      "org.apache.xpath.functions.FuncPosition",
      "org.apache.xpath.functions.FunctionOneArg",
      "org.apache.xpath.functions.FuncCount",
      "org.apache.xpath.functions.FuncId",
      "org.apache.xpath.functions.Function2Args",
      "org.apache.xalan.templates.FuncKey",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncNamespace",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncNot",
      "org.apache.xpath.functions.FuncTrue",
      "org.apache.xpath.functions.FuncFalse",
      "org.apache.xpath.functions.FuncBoolean",
      "org.apache.xpath.functions.FuncLang",
      "org.apache.xpath.functions.FuncNumber",
      "org.apache.xpath.functions.FuncFloor",
      "org.apache.xpath.functions.FuncCeiling",
      "org.apache.xpath.functions.FuncRound",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.xpath.functions.FuncString",
      "org.apache.xpath.functions.FuncStartsWith",
      "org.apache.xpath.functions.FuncContains",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "org.apache.xpath.functions.FuncSubstringAfter",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.functions.Function3Args",
      "org.apache.xpath.functions.FuncTranslate",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.apache.xpath.functions.FuncConcat",
      "org.apache.xpath.functions.FuncSystemProperty",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "org.apache.xpath.functions.FuncExtElementAvailable",
      "org.apache.xpath.functions.FuncSubstring",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.xpath.functions.FuncDoclocation",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.xpath.compiler.FunctionTable",
      "org.apache.xalan.processor.XSLTElementDef",
      "org.apache.xalan.processor.XSLTSchema",
      "org.apache.xalan.processor.XSLTAttributeDef",
      "org.apache.xml.utils.StringToIntTable",
      "org.apache.xalan.templates.ElemTextLiteral",
      "org.apache.xalan.templates.ElemUse",
      "org.apache.xalan.templates.ElemLiteralResult",
      "org.apache.xalan.processor.ProcessorUnknown",
      "org.apache.xalan.templates.ElemUnknown",
      "org.apache.xalan.templates.ElemValueOf",
      "org.apache.xml.utils.QName",
      "org.apache.xalan.templates.ElemCopyOf",
      "org.apache.xalan.transformer.DecimalToRoman",
      "org.apache.xalan.templates.ElemNumber",
      "org.apache.xalan.templates.ElemSort",
      "org.apache.xalan.templates.ElemWithParam",
      "org.apache.xalan.templates.ElemIf",
      "org.apache.xalan.templates.ElemWhen",
      "org.apache.xalan.templates.ElemOtherwise",
      "org.apache.xalan.templates.ElemChoose",
      "org.apache.xalan.templates.ElemElement",
      "org.apache.xalan.templates.ElemAttribute",
      "org.apache.xalan.processor.ProcessorText",
      "org.apache.xalan.templates.ElemPI",
      "org.apache.xalan.templates.ElemComment",
      "org.apache.xalan.templates.ElemCopy",
      "org.apache.xalan.templates.ElemMessage",
      "org.apache.xalan.templates.ElemFallback",
      "org.apache.xalan.templates.ElemTemplate",
      "org.apache.xalan.templates.ElemExsltFunction",
      "org.apache.xalan.templates.ElemExsltFuncResult",
      "org.apache.xalan.processor.ProcessorPreserveSpace",
      "org.apache.xalan.processor.ProcessorStripSpace",
      "org.apache.xalan.processor.ProcessorOutputElem",
      "org.apache.xalan.processor.ProcessorKey",
      "org.apache.xalan.processor.ProcessorDecimalFormat",
      "org.apache.xalan.processor.ProcessorAttributeSet",
      "org.apache.xalan.processor.ProcessorGlobalVariableDecl",
      "org.apache.xalan.processor.ProcessorGlobalParamDecl",
      "org.apache.xalan.processor.ProcessorTemplate",
      "org.apache.xalan.processor.ProcessorNamespaceAlias",
      "org.apache.xalan.templates.ElemExtensionScript",
      "org.apache.xalan.templates.ElemExtensionDecl",
      "org.apache.xml.utils.BoolStack",
      "org.apache.xalan.templates.FuncDocument",
      "org.apache.xalan.templates.FuncFormatNumb",
      "org.apache.xml.utils.NamespaceSupport2",
      "org.apache.xml.utils.Context2",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.xpath.XPath",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xpath.compiler.OpMap",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.xml.utils.ObjectVector",
      "org.apache.xpath.compiler.Lexer",
      "org.apache.xpath.compiler.OpMapVector",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xpath.axes.WalkerFactory",
      "org.apache.xpath.objects.XObject",
      "org.apache.xpath.objects.XNumber",
      "org.apache.xpath.patterns.NodeTest",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.xpath.axes.ChildIterator",
      "org.apache.xpath.axes.IteratorPool",
      "org.apache.xpath.patterns.StepPattern",
      "org.apache.xpath.patterns.UnionPattern",
      "org.apache.xpath.axes.SelfIteratorNoPredicate",
      "uk.ac.sanger.artemis.components.filetree.FileList",
      "uk.ac.sanger.artemis.j2ssh.SshFileManager",
      "uk.ac.sanger.artemis.j2ssh.SshLogin",
      "uk.ac.sanger.artemis.io.FeatureTree$FeatureEnumerator",
      "uk.ac.sanger.artemis.io.ReadOnlyEmblStreamFeature",
      "uk.ac.sanger.artemis.plot.AGWindowAlgorithm",
      "org.apache.xalan.templates.ElemExtensionCall",
      "org.apache.xalan.templates.ElemLiteralResult$Attribute",
      "org.apache.xml.serializer.ToHTMLStream$Trie",
      "org.apache.xml.serializer.ToHTMLStream$Trie$Node",
      "org.apache.xml.serializer.ElemDesc",
      "org.apache.xml.serializer.utils.StringToIntTable",
      "org.apache.xml.serializer.ToHTMLStream",
      "org.apache.xml.serializer.ToSAXHandler",
      "org.apache.xml.serializer.ToHTMLSAXHandler",
      "org.gmod.schema.sequence.FeatureLoc",
      "org.biojava.bio.seq.impl.SimpleRemoteFeature",
      "uk.ac.sanger.artemis.sequence.Marker",
      "uk.ac.sanger.artemis.sequence.MarkerInternal",
      "uk.ac.sanger.artemis.io.IndexFastaStream",
      "org.apache.batik.css.parser.Parser",
      "org.apache.batik.css.parser.DefaultDocumentHandler",
      "org.apache.batik.css.parser.DefaultSelectorFactory",
      "org.apache.batik.css.parser.DefaultConditionFactory",
      "org.apache.batik.css.parser.DefaultErrorHandler",
      "org.emboss.jemboss.JembossParams",
      "org.emboss.jemboss.gui.Browser",
      "org.apache.batik.dom.GenericDOMImplementation",
      "org.apache.batik.xml.XMLCharacters",
      "org.apache.batik.xml.XMLUtilities",
      "org.apache.batik.dom.AbstractChildNode",
      "org.apache.batik.dom.GenericDocumentType",
      "org.apache.batik.dom.AbstractStylableDocument",
      "org.apache.batik.anim.dom.SVGOMDocument",
      "org.apache.batik.anim.dom.SVG12OMDocument",
      "org.apache.batik.dom.AbstractParentNode$ChildNodes",
      "org.apache.batik.anim.dom.SVGOMDocument$AnimAttrListener",
      "org.apache.batik.dom.AbstractAttr",
      "org.apache.batik.dom.AbstractAttrNS",
      "org.apache.batik.dom.GenericAttrNS",
      "org.apache.batik.dom.util.DOMUtilities",
      "org.apache.batik.gvt.ImageNode",
      "org.biojava.bio.seq.io.GAMEFormat"
    );
  }
}
