/**
 * Scaffolding file used to store all the setups needed to run 
 * tests automatically generated by EvoSuite
 * Wed Sep 19 21:34:38 GMT 2018
 */

package uk.ac.sanger.artemis.circular;

import org.evosuite.runtime.annotation.EvoSuiteClassExclude;
import org.junit.BeforeClass;
import org.junit.Before;
import org.junit.After;
import org.junit.AfterClass;
import org.evosuite.runtime.sandbox.Sandbox;
import org.evosuite.runtime.sandbox.Sandbox.SandboxMode;

@EvoSuiteClassExclude
public class TrackManager_ESTest_scaffolding {

  @org.junit.Rule 
  public org.evosuite.runtime.vnet.NonFunctionalRequirementRule nfr = new org.evosuite.runtime.vnet.NonFunctionalRequirementRule();

  private static final java.util.Properties defaultProperties = (java.util.Properties) java.lang.System.getProperties().clone(); 

  private org.evosuite.runtime.thread.ThreadStopper threadStopper =  new org.evosuite.runtime.thread.ThreadStopper (org.evosuite.runtime.thread.KillSwitchHandler.getInstance(), 3000);


  @BeforeClass 
  public static void initEvoSuiteFramework() { 
    org.evosuite.runtime.RuntimeSettings.className = "uk.ac.sanger.artemis.circular.TrackManager"; 
    org.evosuite.runtime.GuiSupport.initialize(); 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfThreads = 100; 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfIterationsPerLoop = 10000; 
    org.evosuite.runtime.RuntimeSettings.mockSystemIn = true; 
    org.evosuite.runtime.RuntimeSettings.sandboxMode = org.evosuite.runtime.sandbox.Sandbox.SandboxMode.RECOMMENDED; 
    org.evosuite.runtime.sandbox.Sandbox.initializeSecurityManagerForSUT(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.init();
    setSystemProperties();
    initializeClasses();
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
  } 

  @AfterClass 
  public static void clearEvoSuiteFramework(){ 
    Sandbox.resetDefaultSecurityManager(); 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
  } 

  @Before 
  public void initTestCase(){ 
    threadStopper.storeCurrentThreads();
    threadStopper.startRecordingTime();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().initHandler(); 
    org.evosuite.runtime.sandbox.Sandbox.goingToExecuteSUTCode(); 
    setSystemProperties(); 
    org.evosuite.runtime.GuiSupport.setHeadless(); 
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    org.evosuite.runtime.agent.InstrumentingAgent.activate(); 
  } 

  @After 
  public void doneWithTestCase(){ 
    threadStopper.killAndJoinClientThreads();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().safeExecuteAddedHooks(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.reset(); 
    resetClasses(); 
    org.evosuite.runtime.sandbox.Sandbox.doneWithExecutingSUTCode(); 
    org.evosuite.runtime.agent.InstrumentingAgent.deactivate(); 
    org.evosuite.runtime.GuiSupport.restoreHeadlessMode(); 
  } 

  public static void setSystemProperties() {
 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
    java.lang.System.setProperty("file.encoding", "UTF-8"); 
    java.lang.System.setProperty("java.awt.headless", "true"); 
    java.lang.System.setProperty("java.io.tmpdir", "/var/folders/r3/l648tx8s7hn8ppds6z2bk5cc000h2n/T/"); 
    java.lang.System.setProperty("user.country", "GB"); 
    java.lang.System.setProperty("user.dir", "/Users/kp11/workspace/applications/Artemis-build-ci/Artemis"); 
    java.lang.System.setProperty("user.home", "/Users/kp11"); 
    java.lang.System.setProperty("user.language", "en"); 
    java.lang.System.setProperty("user.name", "kp11"); 
    java.lang.System.setProperty("user.timezone", ""); 
    java.lang.System.setProperty("log4j.configuration", "SUT.log4j.properties"); 
  }

  private static void initializeClasses() {
    org.evosuite.runtime.classhandling.ClassStateSupport.initializeClasses(TrackManager_ESTest_scaffolding.class.getClassLoader() ,
      "org.apache.xml.serializer.WriterToUTF8Buffered",
      "org.apache.xml.utils.ObjectStack",
      "org.biojava.bio.seq.io.SymbolTokenization$TokenType",
      "org.apache.xml.dtm.ref.IncrementalSAXSource",
      "org.apache.xalan.res.XSLTErrorResources",
      "org.apache.xalan.templates.ElemIf",
      "uk.ac.sanger.artemis.OptionChangeEvent",
      "uk.ac.sanger.artemis.components.genebuilder.JExtendedComboBox",
      "org.apache.xpath.objects.XRTreeFrag",
      "org.apache.xalan.extensions.ExtensionsTable",
      "org.apache.xalan.transformer.TransformSnapshot",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "org.apache.xalan.templates.XSLTVisitor",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xpath.XPath",
      "org.apache.xpath.objects.XNodeSet",
      "com.sshtools.j2ssh.SshClient",
      "uk.ac.sanger.artemis.EntryChangeListener",
      "org.biojava.utils.ListTools$Triplet",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$AlphabetHandler$1",
      "uk.ac.sanger.artemis.Selectable",
      "org.apache.batik.dom.xbl.XBLManagerData",
      "org.apache.log4j.spi.Filter",
      "uk.ac.sanger.artemis.io.RangeVector",
      "uk.ac.sanger.artemis.plot.NcAlgorithm",
      "org.biojava.bio.seq.io.CharacterTokenization",
      "org.apache.xml.dtm.ref.DTMDefaultBaseIterators",
      "org.apache.batik.bridge.SVGAElementBridge",
      "uk.ac.sanger.artemis.util.StringVector",
      "org.apache.xalan.transformer.CountersTable",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SetElementFactory",
      "org.apache.xpath.operations.UnaryOperation",
      "org.biojava.bio.seq.io.SequenceBuilderFactory",
      "org.apache.batik.dom.AbstractParentNode$ElementsByTagName",
      "uk.ac.sanger.artemis.sequence.MarkerRange",
      "org.biojava.utils.Changeable",
      "org.apache.xalan.templates.ElemOtherwise",
      "org.apache.xalan.templates.WhiteSpaceInfo",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.apache.xalan.templates.ElemTextLiteral",
      "org.biojava.utils.stax.DelegationManager",
      "org.biojava.bio.seq.StrandedFeature",
      "org.apache.xpath.functions.WrongNumberArgsException",
      "org.biojava.bio.symbol.IllegalAlphabetException",
      "uk.ac.sanger.artemis.circular.GCSkewGraph",
      "org.apache.xalan.processor.ProcessorNamespaceAlias",
      "org.apache.batik.gvt.filter.GraphicsNodeRable",
      "org.biojava.bio.symbol.AbstractTranslationTable",
      "org.gmod.schema.dao.GeneralDaoI",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "org.apache.log4j.helpers.OptionConverter",
      "org.biojava.bio.symbol.Edit",
      "org.apache.xml.dtm.ref.DTMDefaultBase",
      "org.apache.batik.css.parser.ExtendedParser",
      "uk.ac.sanger.artemis.io.MiscLineGroup",
      "uk.ac.sanger.artemis.components.FeatureDisplay$10",
      "org.apache.xalan.templates.XUnresolvedVariable",
      "uk.ac.sanger.artemis.components.FeatureDisplay$11",
      "org.apache.xml.utils.XMLString",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "org.apache.batik.svggen.ImageCacher$ImageCacheEntry",
      "org.apache.batik.anim.dom.SVGDOMImplementation$SymbolElementFactory",
      "org.apache.batik.gvt.RootGraphicsNode",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "uk.ac.sanger.artemis.io.InvalidRelationException",
      "org.apache.xalan.templates.ElemSort",
      "org.apache.xalan.transformer.DecimalToRoman",
      "org.biojava.bio.seq.impl.FeatureImpl$1",
      "org.biojava.bio.Annotation",
      "org.biojava.bio.symbol.IntegerAlphabet$IntegerSymbol",
      "org.apache.log4j.Category",
      "uk.ac.sanger.artemis.io.LocationParseException",
      "org.apache.xpath.operations.Gt",
      "org.biojava.bio.seq.io.StreamParser",
      "org.biojava.bio.symbol.SimpleSymbol",
      "org.apache.batik.svggen.SVGDescriptor",
      "org.apache.batik.dom.xbl.XBLManager",
      "org.apache.batik.bridge.AbstractGraphicsNodeBridge",
      "org.apache.xpath.XPathVisitor",
      "org.biojava.utils.ChangeEvent",
      "org.gmod.schema.pub.Pub",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "uk.ac.sanger.artemis.io.ChadoCanonicalGene",
      "org.apache.batik.svggen.DefaultCachedImageHandler",
      "org.biojava.bio.symbol.SimpleCrossProductAlphabet",
      "org.biojava.bio.seq.DNATools",
      "uk.ac.sanger.artemis.circular.Block",
      "org.apache.xpath.functions.FuncPosition",
      "uk.ac.sanger.artemis.circular.Feature",
      "org.biojava.bio.seq.RNATools$1",
      "uk.ac.sanger.artemis.components.SegmentBorder",
      "org.apache.batik.css.engine.CSSNavigableDocumentListener",
      "org.biojava.bio.BioRuntimeException",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextElementFactory",
      "org.apache.batik.util.XMLConstants",
      "org.apache.batik.css.engine.CSSNavigableDocument",
      "org.apache.xalan.res.XSLMessages",
      "org.apache.xml.serializer.ToXMLSAXHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ImageElementFactory",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentEvent",
      "org.gmod.schema.utils.propinterface.PropertyI",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolygonElementFactory",
      "org.apache.log4j.spi.AppenderAttachable",
      "org.apache.xpath.axes.WalkingIteratorSorted",
      "org.apache.batik.dom.svg.IdContainer",
      "uk.ac.sanger.artemis.io.GFF3AttributeAggregator",
      "org.apache.xpath.operations.Div",
      "uk.ac.sanger.artemis.util.PushBackException",
      "uk.ac.sanger.artemis.components.FeatureDisplay$12",
      "org.biojava.utils.SingletonList",
      "org.biojava.bio.BioException",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.batik.svggen.DOMTreeManager",
      "org.apache.batik.bridge.AbstractSVGBridge",
      "org.apache.xml.serializer.ToSAXHandler",
      "uk.ac.sanger.artemis.util.WorkingGZIPInputStream",
      "htsjdk.samtools.reference.ReferenceSequenceFile",
      "org.biojava.utils.ChangeType$1",
      "org.apache.xml.utils.res.CharArrayWrapper",
      "org.apache.batik.dom.svg.SVGContext",
      "org.apache.xpath.functions.FuncDoclocation",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FePointLightElementFactory",
      "uk.ac.sanger.artemis.SelectionChangeEvent",
      "org.biojava.utils.ChangeAdapter",
      "uk.ac.sanger.artemis.plot.BaseAlgorithm",
      "org.apache.batik.util.SVGConstants",
      "uk.ac.sanger.artemis.io.Key",
      "org.apache.xalan.processor.ProcessorUnknown",
      "org.apache.xalan.processor.ProcessorOutputElem",
      "org.apache.xalan.templates.ElemForEach",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.batik.anim.dom.SVGOMDocument$AnimAttrListener",
      "uk.ac.sanger.artemis.io.FeatureHeader",
      "uk.ac.sanger.artemis.components.filetree.FileList",
      "org.apache.batik.util.ParsedURL",
      "org.apache.xml.dtm.DTMManager",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GElementFactory",
      "org.apache.xalan.templates.ElemMessage",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "org.apache.xpath.objects.DTMXRTreeFrag",
      "org.apache.xml.serializer.WriterToASCI",
      "uk.ac.sanger.artemis.plot.ATDeviationAlgorithm",
      "org.biojava.bio.seq.io.WordTokenization",
      "org.apache.xalan.processor.XSLTElementDef",
      "uk.ac.sanger.artemis.ChangeListener",
      "org.apache.xpath.operations.Lte",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ScriptElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PathElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncRElementFactory",
      "org.apache.xalan.processor.TransformerFactoryImpl",
      "org.apache.batik.svggen.AbstractImageHandlerEncoder",
      "org.biojava.bio.seq.GappedSequence",
      "org.apache.batik.anim.dom.SVGDOMImplementation$EllipseElementFactory",
      "org.apache.batik.svggen.SVGLine",
      "uk.ac.sanger.artemis.sequence.SequenceChangeEvent",
      "org.gmod.schema.dao.SequenceDaoI",
      "org.apache.xpath.XPathVisitable",
      "org.biojava.bio.seq.StrandedFeature$Template",
      "org.apache.xalan.templates.ElemText",
      "org.biojava.bio.seq.impl.AssembledSymbolList",
      "org.apache.batik.dom.xbl.NodeXBL",
      "com.sshtools.j2ssh.transport.HostKeyVerification",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.biojava.bio.symbol.Symbol",
      "org.apache.batik.dom.AbstractParentNode",
      "org.apache.batik.util.CSSConstants",
      "org.gmod.schema.sequence.FeatureCvTerm",
      "org.apache.xpath.axes.AxesWalker",
      "org.apache.xml.utils.PrefixResolver",
      "org.apache.xalan.processor.ProcessorText",
      "org.biojava.utils.ListTools",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$AlphabetHandler",
      "uk.ac.sanger.artemis.io.DatabaseStreamFeature",
      "org.apache.batik.bridge.SVGAElementBridge$AnchorListener",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xalan.templates.OutputProperties",
      "org.apache.xpath.functions.FuncString",
      "org.biojava.bio.symbol.AlphabetManager$ImmutableWellKnownAlphabetWrapper",
      "uk.ac.sanger.artemis.io.LocationLexer",
      "org.apache.batik.dom.util.CSSStyleDeclarationFactory",
      "org.apache.batik.svggen.SVGGraphics2DIOException",
      "org.apache.xalan.templates.ElemValueOf",
      "org.apache.xpath.functions.FuncSubstring",
      "uk.ac.sanger.artemis.circular.DNADraw",
      "org.apache.batik.bridge.StrokingTextPainter",
      "uk.ac.sanger.artemis.components.ZoomScrollBar",
      "org.apache.xpath.objects.XBoolean",
      "org.apache.xpath.operations.Operation",
      "uk.ac.sanger.artemis.io.StreamSequence",
      "uk.ac.sanger.artemis.io.GFF3AttributeBuilder",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.xml.dtm.ref.ExtendedType",
      "org.apache.xalan.trace.TracerEvent",
      "org.apache.xpath.axes.OneStepIteratorForward",
      "org.apache.xml.utils.ObjectPool",
      "org.apache.xml.serializer.OutputPropertiesFactory",
      "uk.ac.sanger.artemis.j2ssh.SshLogin",
      "org.apache.xalan.templates.ElemPI",
      "org.apache.xpath.axes.ChildIterator",
      "uk.ac.sanger.artemis.util.Document",
      "uk.ac.sanger.artemis.circular.LineAttribute",
      "org.biojava.bio.seq.io.ParseException",
      "org.apache.xalan.templates.ElemFallback",
      "org.apache.batik.bridge.FontFamilyResolver",
      "uk.ac.sanger.artemis.components.FileViewer",
      "org.apache.batik.css.engine.value.ShorthandManager",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.xalan.processor.ProcessorExsltFuncResult",
      "org.biojava.bio.seq.FeatureRealizer",
      "org.apache.batik.bridge.SVGDocumentBridge",
      "uk.ac.sanger.artemis.FeaturePredicateVector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ViewElementFactory",
      "org.apache.xalan.templates.XSLTVisitable",
      "org.biojava.bio.seq.io.SequenceFormat",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefsElementFactory",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "uk.ac.sanger.artemis.plot.ICDIAlgorithm",
      "org.apache.batik.bridge.BridgeUpdateHandler",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.log4j.spi.LoggerRepository",
      "org.apache.xalan.templates.ElemAttribute",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MissingGlyphElementFactory",
      "uk.ac.sanger.artemis.io.GFFMisc",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncAElementFactory",
      "org.apache.batik.dom.AbstractChildNode",
      "uk.ac.sanger.artemis.chado.IBatisDAO",
      "org.apache.batik.i18n.LocalizableSupport",
      "uk.ac.sanger.artemis.plot.GCDeviationAlgorithm",
      "org.apache.batik.anim.dom.SVGOMDocument",
      "org.apache.xpath.operations.Number",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "uk.ac.sanger.artemis.io.FuzzyRange",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownAtomicSymbol",
      "org.apache.xml.dtm.DTMFilter",
      "org.biojava.bio.symbol.AbstractReversibleTranslationTable",
      "org.biojava.bio.seq.io.SeqIOAdapter",
      "org.biojava.bio.symbol.SimpleGeneticCodeTable",
      "uk.ac.sanger.artemis.sequence.MarkerChangeListener",
      "org.biojava.utils.ChangeListener",
      "org.apache.xml.serializer.Serializer",
      "uk.ac.sanger.artemis.GotoEvent",
      "uk.ac.sanger.artemis.components.BasePlot",
      "org.apache.batik.svggen.DefaultExtensionHandler",
      "uk.ac.sanger.artemis.util.TextDocument",
      "org.biojava.utils.AbstractChangeable",
      "org.apache.batik.anim.dom.AnimatedAttributeListener",
      "org.apache.xpath.objects.XObject",
      "org.apache.log4j.Layout",
      "uk.ac.sanger.artemis.EntrySourceVector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpecularLightingElementFactory",
      "org.biojava.bio.seq.SimpleAssembly",
      "org.apache.batik.dom.AbstractNode$1",
      "org.apache.xpath.functions.FuncExtFunction",
      "org.apache.batik.svggen.ImageCacher$External",
      "uk.ac.sanger.artemis.LastSegmentException",
      "org.gmod.schema.dao.SchemaDaoI",
      "uk.ac.sanger.artemis.ChangeEvent",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "org.apache.xpath.axes.SelfIteratorNoPredicate",
      "org.apache.xalan.processor.ProcessorAttributeSet",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDisplacementMapElementFactory",
      "org.apache.xpath.WhitespaceStrippingElementMatcher",
      "org.apache.xalan.processor.ProcessorGlobalVariableDecl",
      "org.apache.batik.svggen.DOMGroupManager",
      "org.apache.batik.dom.AbstractNode",
      "org.biojava.utils.lsid.Identifiable",
      "org.biojava.bio.seq.io.CharacterTokenization$TPStreamParser",
      "uk.ac.sanger.artemis.components.FeatureEdit",
      "org.apache.xpath.operations.Mod",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceNameElementFactory",
      "uk.ac.sanger.artemis.circular.TrackManager",
      "uk.ac.sanger.artemis.circular.UserGraph",
      "org.apache.xpath.operations.Variable",
      "uk.ac.sanger.artemis.io.Sequence",
      "org.apache.xpath.operations.Plus",
      "org.apache.xalan.trace.SelectionEvent",
      "org.apache.batik.dom.AbstractDOMImplementation",
      "uk.ac.sanger.artemis.io.Location",
      "org.apache.log4j.or.ObjectRenderer",
      "org.apache.xalan.transformer.TreeWalker2Result",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RadialGradientElementFactory",
      "org.apache.xalan.templates.ElemApplyTemplates",
      "org.apache.xml.serializer.SerializationHandler",
      "org.apache.xpath.compiler.Lexer",
      "org.apache.xml.serializer.EncodingInfo",
      "uk.ac.sanger.artemis.components.CanvasPanel",
      "org.apache.batik.util.Service",
      "uk.ac.sanger.artemis.io.StreamFeature",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TrefElementFactory",
      "uk.ac.sanger.artemis.components.EntryGroupPanel$1",
      "uk.ac.sanger.artemis.util.ReadOnlyException",
      "org.apache.xalan.templates.ElemUse",
      "org.apache.xpath.functions.FuncCeiling",
      "uk.ac.sanger.artemis.FilteredEntryGroup$3",
      "uk.ac.sanger.artemis.FilteredEntryGroup$2",
      "uk.ac.sanger.artemis.FilteredEntryGroup$1",
      "uk.ac.sanger.artemis.Feature",
      "org.biojava.utils.cache.KeyedWeakReference",
      "org.apache.xpath.axes.ChildTestIterator",
      "org.apache.batik.css.engine.CSSContext",
      "com.sshtools.j2ssh.FileTransferProgress",
      "uk.ac.sanger.artemis.circular.BlockComparator",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TextPathElementFactory",
      "uk.ac.sanger.artemis.util.StringVector$1",
      "org.apache.log4j.spi.LoggerFactory",
      "org.biojava.bio.symbol.DoubleAlphabet$DoubleSymbol",
      "org.apache.batik.dom.events.DocumentEventSupport",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StyleElementFactory",
      "org.apache.xalan.templates.NamespaceAlias",
      "org.apache.xml.dtm.ObjectFactory$ConfigurationError",
      "org.apache.batik.svggen.ImageHandlerPNGEncoder",
      "org.apache.batik.svggen.StyleHandler",
      "org.apache.xml.dtm.ref.sax2dtm.SAX2RTFDTM",
      "uk.ac.sanger.artemis.io.KeyVector",
      "org.apache.batik.bridge.UserAgentAdapter",
      "org.apache.batik.svggen.ImageHandler",
      "org.biojava.bio.Annotatable",
      "uk.ac.sanger.artemis.io.MSPcrunchEntryInformation",
      "org.apache.batik.bridge.AnimatableSVGBridge",
      "org.apache.xpath.functions.FuncLast",
      "org.apache.xml.serializer.ToStream$BoolStack",
      "org.biojava.bio.seq.SimpleFeatureRealizer$1",
      "org.biojava.utils.stax.StringElementHandlerBase",
      "org.apache.xpath.functions.FuncSubstringAfter",
      "org.apache.xpath.functions.FuncSystemProperty",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTileElementFactory",
      "org.biojava.utils.ChangeForwarder$Retyper",
      "org.apache.xpath.compiler.FunctionTable",
      "org.biojava.bio.seq.io.SymbolTokenization",
      "org.apache.xalan.processor.ProcessorTemplateElem",
      "org.apache.batik.ext.awt.image.rendered.AbstractRed",
      "org.apache.batik.svggen.ImageHandlerBase64Encoder",
      "org.apache.log4j.Priority",
      "org.apache.batik.svggen.SVGFilterDescriptor",
      "org.apache.batik.anim.dom.SVGDOMImplementation$StopElementFactory",
      "org.apache.batik.svggen.AbstractSVGFilterConverter",
      "org.biojava.bio.seq.RNATools$RNAComplementTranslationTable",
      "org.apache.xalan.extensions.ExpressionVisitor",
      "org.apache.xml.utils.ObjectVector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TspanElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MpathElementFactory",
      "org.apache.xalan.templates.ElemAttributeSet",
      "uk.ac.sanger.artemis.io.DocumentEntry",
      "org.biojava.bio.symbol.SimpleAtomicSymbol",
      "org.apache.xml.utils.IntStack",
      "org.apache.log4j.DefaultCategoryFactory",
      "uk.ac.sanger.artemis.io.BlastStreamFeature",
      "uk.ac.sanger.artemis.components.genebuilder.ortholog.MatchPanel",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "org.biojava.bio.seq.io.SymbolTokenization$1",
      "uk.ac.sanger.artemis.io.OutOfDateException",
      "org.apache.batik.i18n.Localizable",
      "org.apache.xalan.trace.TraceManager",
      "org.apache.batik.svggen.DefaultImageHandler",
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      "uk.ac.sanger.artemis.io.GFFEntryInformation",
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      "uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm",
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      "org.apache.batik.svggen.CachedImageHandlerBase64Encoder",
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      "org.biojava.bio.symbol.SingletonAlphabet",
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      "htsjdk.samtools.reference.ReferenceSequence",
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      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.batik.svggen.SVGArc",
      "org.apache.log4j.spi.ThrowableRendererSupport",
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      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$SymbolHandler$1",
      "org.apache.commons.logging.impl.Log4JLogger",
      "uk.ac.sanger.artemis.io.IndexFastaStream",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeSpotLightElementFactory",
      "org.apache.batik.dom.AbstractParentNode$ElementsByTagNameNS",
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      "org.apache.xalan.templates.StylesheetRoot$ComposeState",
      "org.biojava.bio.symbol.AbstractSymbolList$EditScreener",
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      "uk.ac.sanger.artemis.FeaturePredicate",
      "uk.ac.sanger.artemis.Logger",
      "uk.ac.sanger.artemis.components.LogReadListener",
      "org.apache.log4j.spi.LoggingEvent",
      "org.apache.xalan.processor.XSLTElementProcessor",
      "org.apache.xpath.functions.FuncTranslate",
      "org.apache.xalan.templates.ElemExsltFunction",
      "uk.ac.sanger.artemis.FeatureEnumeration",
      "org.biojava.bio.symbol.AbstractSymbolList",
      "uk.ac.sanger.artemis.io.StreamFeatureTable",
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      "org.gmod.schema.dao.PubDaoI",
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      "uk.ac.sanger.artemis.GotoListener",
      "uk.ac.sanger.artemis.components.LogViewer$1",
      "org.apache.batik.dom.AbstractParentNode$ChildNodes",
      "org.apache.log4j.AppenderSkeleton",
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      "org.apache.batik.anim.dom.SVGDOMImplementation$FeTurbulenceElementFactory",
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      "uk.ac.sanger.artemis.io.SimpleDocumentFeature",
      "uk.ac.sanger.artemis.sequence.BasePatternFormatException",
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      "uk.ac.sanger.artemis.circular.GeneticMarker",
      "com.sshtools.j2ssh.authentication.PasswordAuthenticationClient",
      "org.apache.batik.bridge.TextLayoutFactory",
      "uk.ac.sanger.artemis.plot.CodonUsageAlgorithm",
      "uk.ac.sanger.artemis.io.MSPcrunchDocumentEntry",
      "uk.ac.sanger.artemis.circular.Wizard$1",
      "org.apache.batik.dom.StyleSheetFactory",
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      "org.biojava.bio.symbol.DoubleAlphabet$SubDoubleAlphabet",
      "org.apache.xpath.axes.BasicTestIterator",
      "org.biojava.bio.seq.io.NameTokenization",
      "org.apache.xml.utils.SAXSourceLocator",
      "uk.ac.sanger.artemis.io.FeatureTable",
      "org.apache.xalan.templates.ElemElement",
      "uk.ac.sanger.artemis.io.PublicDBDocumentEntry",
      "org.apache.batik.bridge.ExternalResourceSecurity",
      "org.emboss.jemboss.JembossParams",
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      "uk.ac.sanger.artemis.plot.CumulativeATSkewAlgorithm",
      "org.biojava.bio.symbol.SimpleAlphabet",
      "org.apache.xml.serializer.XSLOutputAttributes",
      "org.apache.log4j.Hierarchy",
      "org.emboss.jemboss.gui.Browser$3",
      "org.emboss.jemboss.gui.Browser$4",
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      "uk.ac.sanger.artemis.plot.GCFrameAlgorithm",
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      "org.emboss.jemboss.gui.Browser$6",
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      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "org.apache.batik.i18n.LocaleGroup",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "org.apache.log4j.spi.OptionHandler",
      "org.biojava.bio.symbol.SimpleManyToOneTranslationTable",
      "uk.ac.sanger.artemis.plot.PositionalAsymmetryAlgorithm",
      "org.biojava.utils.lsid.LifeScienceIdentifier",
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      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceFormatElementFactory",
      "org.apache.xml.serializer.ToStream",
      "org.apache.xmlgraphics.java2d.GraphicContext",
      "htsjdk.samtools.reference.AbstractFastaSequenceFile",
      "org.biojava.bio.symbol.DoubleAlphabet$DoubleRange",
      "org.apache.batik.bridge.ConcreteTextLayoutFactory",
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      "org.apache.batik.anim.dom.SVGDOMImplementation$FeImageElementFactory",
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      "uk.ac.sanger.artemis.circular.TextFieldInt",
      "uk.ac.sanger.artemis.components.SelectionViewer",
      "org.apache.xml.dtm.ref.ExpandedNameTable$HashEntry",
      "uk.ac.sanger.artemis.io.LazyQualifierValue",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.xml.serializer.OutputPropertiesFactory$1",
      "org.biojava.bio.symbol.AbstractSymbol",
      "org.gmod.schema.cv.CvTerm",
      "uk.ac.sanger.artemis.circular.Track",
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      "org.apache.batik.anim.dom.SVGDOMImplementation$SvgElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$DefinitionSrcElementFactory",
      "org.apache.xpath.axes.OneStepIterator",
      "uk.ac.sanger.artemis.components.Plot",
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      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "org.apache.batik.css.engine.CSSEngine",
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      "uk.ac.sanger.artemis.plot.KarlinSigAlgorithm",
      "org.apache.xalan.templates.ElemApplyImport",
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      "org.apache.xml.dtm.ObjectFactory",
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      "org.apache.xalan.templates.ElemExsltFuncResult",
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      "uk.ac.sanger.artemis.circular.DNADraw$5",
      "uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm",
      "uk.ac.sanger.artemis.circular.DNADraw$6",
      "org.apache.batik.css.engine.CSSStylableElement",
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      "uk.ac.sanger.artemis.circular.DNADraw$4",
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      "uk.ac.sanger.artemis.circular.DNADraw$2",
      "uk.ac.sanger.artemis.circular.TrackManager$1",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownAlphabet",
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      "uk.ac.sanger.artemis.Options",
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      "uk.ac.sanger.artemis.circular.TextFieldFloat$DecimalNumberDocument",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeGaussianBlurElementFactory",
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      "org.apache.batik.bridge.UserAgent",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontElementFactory",
      "org.apache.batik.svggen.SVGGeneratorContext",
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      "org.biojava.utils.stax.SAX2StAXAdaptor$HandlerBinding",
      "uk.ac.sanger.artemis.components.KeyChoice",
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      "uk.ac.sanger.artemis.io.RawStreamSequence",
      "org.apache.batik.dom.svg.LiveAttributeValue",
      "org.apache.batik.anim.dom.SVGDOMImplementation$VkernElementFactory",
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      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "uk.ac.sanger.artemis.circular.ScrollPanel",
      "org.apache.xpath.axes.DescendantIterator",
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      "org.biojava.utils.SmallMap",
      "org.apache.batik.dom.events.EventSupport",
      "org.apache.batik.svggen.SVGPath",
      "org.apache.batik.svggen.GenericImageHandler",
      "org.biojava.bio.seq.RealizingFeatureHolder",
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      "org.apache.xalan.templates.FuncKey",
      "org.apache.xpath.objects.XRTreeFragSelectWrapper",
      "org.apache.batik.anim.dom.SVGDOMImplementation$RectElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LinearGradientElementFactory",
      "uk.ac.sanger.artemis.circular.GCGraph",
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      "org.apache.batik.dom.AbstractElement",
      "org.apache.batik.svggen.ExtensionHandler",
      "org.apache.batik.gvt.CanvasGraphicsNode",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncFloor",
      "uk.ac.sanger.artemis.plot.GCWindowAlgorithm",
      "org.gmod.schema.dao.CvDaoI",
      "uk.ac.sanger.artemis.io.ReadListener",
      "org.biojava.bio.seq.Feature",
      "uk.ac.sanger.artemis.io.InvalidKeyException",
      "org.apache.xalan.processor.ProcessorGlobalParamDecl",
      "uk.ac.sanger.artemis.circular.TextFieldSink",
      "org.apache.xml.utils.XMLStringFactory",
      "org.apache.xalan.transformer.TransformState",
      "uk.ac.sanger.artemis.io.Packing",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeComponentTransferElementFactory",
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      "org.biojava.utils.stax.SAX2StAXAdaptor$1",
      "uk.ac.sanger.artemis.util.ByteBuffer",
      "org.apache.xml.res.XMLMessages",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDiffuseLightingElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateTransformElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeDistantLightElementFactory",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.components.DisplayAdjustmentListener",
      "org.biojava.utils.stax.StAXContentHandlerBase",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.EntryGroupChangeListener",
      "uk.ac.sanger.artemis.ActionController",
      "org.apache.xalan.templates.ElemParam",
      "uk.ac.sanger.artemis.io.BetweenRange",
      "uk.ac.sanger.artemis.ExternalProgramMonitor",
      "org.apache.batik.bridge.TextPainter",
      "org.apache.xalan.templates.ElemVariable",
      "org.biojava.bio.EmptyAnnotation",
      "org.apache.xpath.XPathProcessorException",
      "uk.ac.sanger.artemis.FeatureFromVectorPredicate",
      "uk.ac.sanger.artemis.plot.CumulativeGCSkewAlgorithm",
      "org.apache.batik.bridge.SVGAElementBridge$CursorMouseOverListener",
      "uk.ac.sanger.artemis.circular.TextFieldFloat",
      "org.apache.log4j.PropertyConfigurator",
      "org.apache.log4j.spi.ThrowableRenderer",
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      "org.biojava.bio.symbol.AlphabetManager",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AElementFactory",
      "org.apache.xml.utils.StopParseException",
      "uk.ac.sanger.artemis.circular.Ticks",
      "uk.ac.sanger.artemis.Selection",
      "org.apache.xalan.processor.ProcessorPreserveSpace",
      "uk.ac.sanger.artemis.sequence.NoSequenceException",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "org.apache.xpath.axes.FilterExprWalker",
      "org.biojava.bio.symbol.SparseCrossProductAlphabet",
      "org.biojava.bio.seq.ComponentFeature",
      "uk.ac.sanger.artemis.circular.TrackManager$9",
      "uk.ac.sanger.artemis.circular.TrackManager$8",
      "uk.ac.sanger.artemis.circular.TrackManager$7",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphItemElementFactory",
      "uk.ac.sanger.artemis.circular.TrackManager$6",
      "uk.ac.sanger.artemis.circular.TrackManager$5",
      "org.apache.xpath.objects.XString",
      "uk.ac.sanger.artemis.circular.TrackManager$4",
      "uk.ac.sanger.artemis.circular.TrackManager$3",
      "uk.ac.sanger.artemis.circular.TrackManager$2",
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      "uk.ac.sanger.artemis.io.BioJavaEntry",
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      "uk.ac.sanger.artemis.components.Splash",
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      "org.apache.xml.utils.BoolStack",
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      "uk.ac.sanger.artemis.io.EntryInformationException",
      "org.apache.batik.dom.ExtensibleDOMImplementation",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "org.apache.batik.gvt.event.GraphicsNodeEvent",
      "org.apache.xalan.templates.ElemCallTemplate",
      "org.apache.xalan.templates.ElemWithParam",
      "org.apache.batik.anim.dom.SVGDOMImplementation$GlyphRefElementFactory",
      "uk.ac.sanger.artemis.components.filetree.RemoteFileNode",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry$1",
      "org.biojava.bio.symbol.SimpleSymbolList$SSLIOListener",
      "org.apache.log4j.Level",
      "org.apache.xml.serializer.SerializerBase",
      "org.apache.batik.dom.AbstractParentChildNode",
      "uk.ac.sanger.artemis.components.FeatureDisplay",
      "uk.ac.sanger.artemis.io.EntryInformation",
      "org.apache.xpath.operations.Minus",
      "org.biojava.bio.seq.io.SeqIOListener",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ClipPathElementFactory",
      "org.biojava.utils.ChangeType",
      "org.apache.batik.bridge.ScriptSecurity",
      "org.apache.batik.bridge.BridgeException",
      "uk.ac.sanger.artemis.io.ReadFormatException",
      "org.apache.xalan.transformer.StackGuard",
      "org.apache.batik.anim.dom.SVGDOMImplementation$HkernElementFactory",
      "org.apache.batik.css.engine.value.ValueManager",
      "org.apache.xml.serializer.WriterChain",
      "org.gmod.schema.sequence.FeaturePub",
      "com.sshtools.j2ssh.io.ByteArrayReader",
      "org.apache.batik.svggen.CachedImageHandler",
      "org.apache.xalan.trace.TraceListener",
      "org.biojava.bio.symbol.EmptyAlphabet",
      "org.apache.batik.bridge.SVGAElementBridge$CursorMouseOutListener",
      "org.apache.batik.dom.AbstractAttr",
      "org.apache.xalan.processor.ProcessorKey",
      "org.biojava.bio.seq.SimpleFeatureRealizer",
      "uk.ac.sanger.artemis.io.GenbankStreamFeature",
      "org.apache.batik.ext.awt.g2d.TransformStackElement",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeOffsetElementFactory",
      "org.apache.batik.bridge.GraphicsNodeBridge",
      "org.apache.batik.bridge.TextNode",
      "org.apache.xml.utils.DefaultErrorHandler",
      "org.emboss.jemboss.gui.MemoryComboBox",
      "org.biojava.bio.symbol.SimpleBasisSymbol",
      "org.biojava.bio.seq.DNATools$DNAComplementTranslationTable",
      "org.apache.xpath.compiler.OpMapVector",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "uk.ac.sanger.artemis.ActionVector",
      "org.apache.batik.svggen.SVGIDGenerator",
      "uk.ac.sanger.artemis.sequence.Strand",
      "uk.ac.sanger.artemis.chado.GmodDAO",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.emboss.jemboss.gui.Browser",
      "org.apache.batik.svggen.ErrorHandler",
      "org.apache.xml.dtm.DTMConfigurationException",
      "org.apache.xml.utils.WrappedRuntimeException",
      "org.apache.xml.serializer.ElemContext",
      "uk.ac.sanger.artemis.OptionChangeListener",
      "org.apache.xpath.ExtensionsProvider",
      "org.apache.batik.dom.events.DocumentEventSupport$EventFactory",
      "uk.ac.sanger.artemis.circular.RestrictionEnzyme",
      "org.apache.batik.dom.AbstractDocument",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeNodeElementFactory",
      "uk.ac.sanger.artemis.util.LargeObjectDocument",
      "org.apache.xpath.operations.Equals",
      "uk.ac.sanger.artemis.io.GenbankMisc",
      "uk.ac.sanger.artemis.chado.JdbcDAO",
      "org.apache.batik.svggen.SVGEllipse",
      "org.apache.xml.utils.Context2",
      "org.biojava.utils.stax.StAXContentHandler",
      "uk.ac.sanger.artemis.components.SwingWorker",
      "uk.ac.sanger.artemis.io.PublicDBStreamFeature",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FontFaceSrcElementFactory",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.axes.WalkerFactory",
      "uk.ac.sanger.artemis.io.FastaStreamSequence",
      "org.apache.xpath.patterns.StepPattern",
      "uk.ac.sanger.artemis.io.FeatureEnumeration",
      "org.apache.xalan.templates.ElemCopy",
      "org.apache.xpath.VariableStack",
      "org.apache.xalan.transformer.TransformerIdentityImpl",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownTokenizationWrapper",
      "org.biojava.utils.ChangeForwarder",
      "org.apache.xpath.axes.PathComponent",
      "org.apache.xml.dtm.DTMException",
      "org.apache.xpath.XPathContext$XPathExpressionContext",
      "org.apache.xml.utils.NodeConsumer",
      "org.biojava.bio.symbol.GappedSymbolList",
      "org.apache.xml.utils.DOMHelper",
      "org.apache.xpath.functions.FuncFalse",
      "uk.ac.sanger.artemis.EntryChangeEvent",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xml.serializer.ExtendedContentHandler",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MetadataElementFactory",
      "org.apache.xpath.functions.Function",
      "org.apache.xml.serializer.ExtendedLexicalHandler",
      "org.biojava.bio.seq.FeatureFilter",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "uk.ac.sanger.artemis.io.DocumentFeature",
      "org.biojava.bio.SimpleAnnotation",
      "org.apache.xalan.templates.DecimalFormatProperties",
      "org.biojava.bio.symbol.IntegerAlphabet",
      "uk.ac.sanger.artemis.plot.Algorithm",
      "org.apache.xpath.res.XPATHMessages",
      "org.biojava.bio.seq.impl.FeatureImpl",
      "org.apache.log4j.spi.Configurator",
      "uk.ac.sanger.artemis.io.MSPcrunchStreamFeature",
      "org.apache.xml.utils.ListingErrorHandler",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.utils.WrappedRuntimeException",
      "org.apache.batik.bridge.TextSpanLayout",
      "org.gmod.schema.sequence.Feature",
      "org.biojava.bio.symbol.FiniteAlphabet",
      "org.apache.xalan.extensions.ExpressionContext",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateElementFactory",
      "org.gmod.schema.sequence.FeatureProp",
      "org.apache.xpath.functions.FuncCount",
      "org.gmod.schema.utils.Rankable",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MarkerElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CursorElementFactory",
      "org.apache.batik.bridge.SVGGElementBridge",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "uk.ac.sanger.artemis.io.EmblStreamSequence",
      "org.apache.xml.serializer.ToXMLStream",
      "org.biojava.bio.seq.io.CrossProductTokenization",
      "org.apache.xml.serializer.EncodingInfo$InEncoding",
      "org.apache.batik.svggen.SVGGraphics2D",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xalan.processor.ProcessorStylesheetDoc",
      "org.apache.xalan.templates.ElemExtensionCall",
      "org.biojava.bio.seq.FeatureHolder",
      "org.biojava.bio.symbol.FundamentalAtomicSymbol",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeMergeElementFactory",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$CharacterTokenizationHandler$MappingHandler",
      "org.gmod.schema.dao.OrganismDaoI",
      "org.apache.batik.dom.ExtensibleDOMImplementation$ElementFactory",
      "uk.ac.sanger.artemis.FeaturePredicateConjunction",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "org.biojava.utils.Unchangeable",
      "uk.ac.sanger.artemis.circular.ProgressFrame",
      "uk.ac.sanger.artemis.components.FeatureDisplay$3",
      "org.apache.log4j.LogManager",
      "org.gmod.schema.sequence.FeatureLoc",
      "org.biojava.bio.symbol.AlphabetManager$AlphabetManagerHandler$SymbolHandler",
      "org.biojava.bio.symbol.AlphabetIndex",
      "uk.ac.sanger.artemis.components.FeatureDisplay$1",
      "uk.ac.sanger.artemis.components.FeatureDisplay$2",
      "org.apache.xpath.functions.FuncStartsWith",
      "org.apache.batik.anim.dom.SVGDOMImplementation$MaskElementFactory",
      "org.apache.xalan.processor.ProcessorLRE",
      "org.apache.batik.anim.dom.SVGDOMImplementation$ForeignObjectElementFactory",
      "org.apache.log4j.or.RendererMap",
      "org.apache.xalan.templates.FuncFormatNumb",
      "org.apache.batik.gvt.CompositeGraphicsNode",
      "org.apache.xalan.transformer.KeyManager",
      "uk.ac.sanger.artemis.ExternalProgram",
      "org.apache.batik.dom.util.HashTable",
      "uk.ac.sanger.artemis.io.EmblMisc",
      "uk.ac.sanger.artemis.io.PartialSequence",
      "org.apache.batik.dom.AbstractStylableDocument",
      "org.apache.xpath.axes.ReverseAxesWalker",
      "uk.ac.sanger.artemis.plot.ScaledChiAlgorithm",
      "org.apache.xml.utils.QName",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFloodElementFactory",
      "uk.ac.sanger.artemis.Entry",
      "org.apache.xpath.axes.SubContextList",
      "org.apache.xml.dtm.ref.DTMTreeWalker",
      "org.apache.xml.dtm.DTMIterator",
      "org.apache.batik.dom.GenericDOMImplementation",
      "org.biojava.utils.ClassTools",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.xml.serializer.DOMSerializer",
      "uk.ac.sanger.artemis.io.EmblStreamFeature",
      "org.apache.xpath.compiler.OpMap",
      "org.apache.batik.bridge.Bridge",
      "org.biojava.utils.cache.WeakValueHashMap",
      "org.biojava.bio.symbol.IllegalSymbolException",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AltGlyphDefElementFactory",
      "org.apache.xpath.operations.And",
      "uk.ac.sanger.artemis.util.InputStreamProgressListener",
      "uk.ac.sanger.artemis.io.LocationLexer$TokenEnumeration",
      "org.apache.xml.dtm.SecuritySupport$4",
      "org.apache.xml.dtm.SecuritySupport$3",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "org.apache.xml.dtm.SecuritySupport$6",
      "org.apache.batik.svggen.ImageHandlerJPEGEncoder",
      "org.biojava.bio.symbol.TranslationTable",
      "uk.ac.sanger.artemis.components.EntryGroupPanel",
      "org.biojava.bio.symbol.CrossProductAlphabetIndex",
      "org.apache.xml.dtm.SecuritySupport$7",
      "org.biojava.bio.symbol.SimpleSymbolList$1",
      "org.apache.xalan.templates.AVT",
      "com.sshtools.j2ssh.sftp.FileAttributes",
      "uk.ac.sanger.artemis.sequence.Marker",
      "uk.ac.sanger.artemis.plot.CSCSAlgorithm",
      "org.biojava.bio.symbol.DoubleAlphabet",
      "org.apache.xml.utils.DOM2Helper",
      "org.apache.log4j.ProvisionNode",
      "org.apache.batik.anim.dom.SVGDOMImplementation$CircleElementFactory",
      "uk.ac.sanger.artemis.io.GFFDocumentEntry",
      "uk.ac.sanger.artemis.io.GFFStreamFeature",
      "org.apache.xalan.processor.StylesheetHandler",
      "org.biojava.bio.symbol.AtomicSymbol",
      "org.apache.xpath.XPathContext",
      "org.apache.batik.bridge.DocumentBridge",
      "org.apache.xalan.templates.ElemNumber",
      "org.apache.batik.gvt.event.EventDispatcher",
      "org.apache.batik.bridge.SVGAElementBridge$AnchorDefaultActionable",
      "org.apache.xml.utils.res.XResourceBundle",
      "org.apache.xml.dtm.ref.DTMManagerDefault",
      "org.apache.xalan.trace.GenerateEvent",
      "uk.ac.sanger.artemis.ExternalProgramException",
      "org.apache.xalan.processor.ProcessorDecimalFormat",
      "uk.ac.sanger.artemis.FeatureChangeEvent",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeBlendElementFactory",
      "org.apache.batik.anim.dom.SVGDOMImplementation$UseElementFactory",
      "org.apache.xpath.NodeSetDTM",
      "org.apache.xalan.templates.ElemExtensionScript",
      "org.apache.batik.anim.dom.SVGDOMImplementation$AnimateMotionElementFactory",
      "uk.ac.sanger.artemis.io.LineGroup",
      "org.apache.xml.dtm.ref.ExpandedNameTable",
      "uk.ac.sanger.artemis.Entry$FeatureEnumerator",
      "org.apache.batik.svggen.SVGGraphicContext",
      "org.apache.xml.dtm.SecuritySupport$2",
      "org.apache.xml.dtm.SecuritySupport$1",
      "uk.ac.sanger.artemis.GotoEventSource",
      "org.biojava.utils.ChangeSupport",
      "org.apache.xpath.axes.AttributeIterator",
      "org.biojava.bio.seq.io.AlternateTokenization",
      "org.apache.batik.svggen.SVGBufferedImageOp",
      "org.biojava.bio.symbol.AlphabetManager$1",
      "org.apache.log4j.Logger",
      "uk.ac.sanger.artemis.FeatureSegment",
      "org.apache.xpath.operations.Or",
      "uk.ac.sanger.artemis.EntryGroup",
      "org.apache.xml.dtm.DTMWSFilter",
      "uk.ac.sanger.artemis.io.Feature",
      "org.apache.batik.util.Base64EncoderStream",
      "org.biojava.bio.AbstractAnnotation",
      "org.biojava.bio.symbol.ManyToOneTranslationTable",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "org.apache.xpath.functions.FuncRound",
      "org.biojava.bio.seq.SequenceIterator",
      "org.apache.xml.serializer.SerializerConstants",
      "org.apache.batik.gvt.Selectable",
      "org.apache.batik.anim.dom.SVGDOMImplementation$FeFuncBElementFactory",
      "uk.ac.sanger.artemis.components.DisplayComponent",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator",
      "org.apache.log4j.spi.RepositorySelector",
      "org.apache.batik.ext.awt.image.renderable.Filter",
      "org.biojava.utils.ListTools$SeriesList",
      "org.apache.batik.svggen.SVGGraphicContextConverter",
      "org.biojava.utils.ChangeListener$LoggingListener",
      "org.apache.xalan.templates.TemplateList",
      "uk.ac.sanger.artemis.io.ReadEvent",
      "htsjdk.samtools.reference.IndexedFastaSequenceFile",
      "org.apache.batik.svggen.ImageCacher",
      "uk.ac.sanger.artemis.io.Entry",
      "org.apache.xml.serializer.SecuritySupport$4",
      "uk.ac.sanger.artemis.util.LinePushBackReader",
      "uk.ac.sanger.artemis.util.ProgressInputStream",
      "org.apache.batik.anim.dom.SVGDOMImplementation$TitleElementFactory",
      "org.apache.xpath.operations.Mult",
      "org.apache.xalan.templates.ElemUnknown",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "uk.ac.sanger.artemis.circular.Graph",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "uk.ac.sanger.artemis.chado.ChadoTransactionManager",
      "org.apache.xpath.functions.FuncTrue",
      "org.biojava.bio.symbol.LinearAlphabetIndex",
      "org.apache.xalan.extensions.ExtensionNamespacesManager",
      "org.apache.xpath.operations.Lt",
      "org.apache.xalan.templates.KeyDeclaration",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.batik.anim.dom.SVGDOMImplementation$LineElementFactory",
      "org.biojava.bio.symbol.Location",
      "org.apache.batik.bridge.SVGAElementBridge$CursorHolder",
      "org.gmod.schema.organism.Organism",
      "org.apache.xpath.operations.String",
      "org.apache.xpath.functions.FuncId",
      "org.biojava.bio.symbol.Alphabet",
      "org.biojava.utils.ListTools$5",
      "uk.ac.sanger.artemis.chado.ChadoTransaction",
      "org.apache.log4j.spi.HierarchyEventListener",
      "org.gmod.schema.sequence.FeatureSynonym",
      "org.apache.xalan.templates.ElemChoose",
      "org.biojava.bio.symbol.AlphabetManager$WellKnownGapSymbol",
      "uk.ac.sanger.artemis.io.QualifierLazyLoading",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "org.apache.xalan.res.XSLTErrorResources_en",
      "org.apache.xpath.operations.Neg",
      "org.apache.batik.anim.dom.SVGDOMImplementation$PolylineElementFactory",
      "org.apache.xml.dtm.DTM",
      "org.apache.batik.gvt.ImageNode",
      "org.apache.batik.svggen.SVGShape",
      "uk.ac.sanger.artemis.SelectionChangeListener",
      "org.apache.batik.svggen.SVGSyntax",
      "org.apache.xalan.transformer.TransformerImpl"
    );
  } 

  private static void resetClasses() {
    org.evosuite.runtime.classhandling.ClassResetter.getInstance().setClassLoader(TrackManager_ESTest_scaffolding.class.getClassLoader()); 

    org.evosuite.runtime.classhandling.ClassStateSupport.resetClasses(
      "uk.ac.sanger.artemis.circular.TrackManager",
      "uk.ac.sanger.artemis.circular.TrackManager$3",
      "uk.ac.sanger.artemis.circular.TrackManager$2",
      "uk.ac.sanger.artemis.circular.TrackManager$1",
      "uk.ac.sanger.artemis.circular.TrackManager$4",
      "uk.ac.sanger.artemis.circular.TrackManager$5",
      "uk.ac.sanger.artemis.circular.TrackManager$6",
      "uk.ac.sanger.artemis.circular.TrackManager$7",
      "uk.ac.sanger.artemis.circular.TrackManager$8",
      "uk.ac.sanger.artemis.circular.TrackManager$9",
      "uk.ac.sanger.artemis.circular.Track",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.FeatureKeyQualifierPredicate",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "uk.ac.sanger.artemis.circular.Wizard",
      "uk.ac.sanger.artemis.circular.ScrollPanel",
      "uk.ac.sanger.artemis.circular.DNADraw",
      "uk.ac.sanger.artemis.circular.DNADraw$1",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.io.BlastEntryInformation",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.io.RangeVector",
      "org.apache.xml.utils.DefaultErrorHandler",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.xpath.XPath",
      "org.apache.xpath.Expression",
      "org.apache.xpath.functions.Function",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xpath.functions.FuncLast",
      "org.apache.xpath.functions.FuncPosition",
      "org.apache.xpath.functions.FunctionOneArg",
      "org.apache.xpath.functions.FuncCount",
      "org.apache.xpath.functions.FuncId",
      "org.apache.xpath.functions.Function2Args",
      "org.apache.xalan.templates.FuncKey",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncNamespace",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncNot",
      "org.apache.xpath.functions.FuncTrue",
      "org.apache.xpath.functions.FuncFalse",
      "org.apache.xpath.functions.FuncBoolean",
      "org.apache.xpath.functions.FuncLang",
      "org.apache.xpath.functions.FuncNumber",
      "org.apache.xpath.functions.FuncFloor",
      "org.apache.xpath.functions.FuncCeiling",
      "org.apache.xpath.functions.FuncRound",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.xpath.functions.FuncString",
      "org.apache.xpath.functions.FuncStartsWith",
      "org.apache.xpath.functions.FuncContains",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "org.apache.xpath.functions.FuncSubstringAfter",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.functions.Function3Args",
      "org.apache.xpath.functions.FuncTranslate",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.apache.xpath.functions.FuncConcat",
      "org.apache.xpath.functions.FuncSystemProperty",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "org.apache.xpath.functions.FuncExtElementAvailable",
      "org.apache.xpath.functions.FuncSubstring",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.xpath.functions.FuncDoclocation",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.xpath.compiler.FunctionTable",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xpath.compiler.OpMap",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.xml.utils.ObjectVector",
      "org.apache.xpath.compiler.Lexer",
      "org.apache.xpath.compiler.OpMapVector",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xpath.axes.WalkerFactory",
      "org.apache.xpath.objects.XObject",
      "org.apache.xpath.objects.XNumber",
      "org.apache.xpath.patterns.NodeTest",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.xpath.axes.ChildIterator",
      "org.apache.xpath.axes.IteratorPool",
      "org.apache.xalan.templates.ElemTemplate",
      "org.apache.xpath.patterns.StepPattern",
      "org.apache.xalan.templates.ElemForEach",
      "org.apache.xalan.templates.ElemCallTemplate",
      "org.apache.xalan.templates.ElemApplyTemplates",
      "org.apache.xpath.patterns.UnionPattern",
      "org.apache.xalan.templates.ElemValueOf",
      "org.apache.xpath.axes.SelfIteratorNoPredicate",
      "org.apache.xalan.transformer.TransformerImpl",
      "org.apache.xml.utils.ObjectPool",
      "org.apache.xml.serializer.SerializerBase",
      "org.apache.xml.serializer.SecuritySupport",
      "org.apache.xml.serializer.SecuritySupport$4",
      "org.apache.xml.serializer.ToStream",
      "org.apache.xml.serializer.ToTextStream",
      "org.apache.xalan.templates.OutputProperties",
      "org.apache.xml.serializer.OutputPropertiesFactory",
      "org.apache.xml.serializer.OutputPropertiesFactory$1",
      "org.apache.xml.utils.ObjectStack",
      "org.apache.xml.utils.NodeVector",
      "org.apache.xalan.transformer.KeyManager",
      "org.apache.xml.utils.BoolStack",
      "org.apache.xalan.trace.TraceManager",
      "org.apache.xml.dtm.DTMManager",
      "org.apache.xpath.XPathContext",
      "org.apache.xml.utils.IntVector",
      "org.apache.xml.utils.IntStack",
      "org.apache.xml.utils.XMLStringFactory",
      "org.apache.xpath.objects.XMLStringFactoryImpl",
      "org.apache.xml.dtm.ObjectFactory",
      "org.apache.xml.dtm.SecuritySupport",
      "org.apache.xml.dtm.SecuritySupport$4",
      "org.apache.xml.dtm.SecuritySupport$7",
      "org.apache.xml.dtm.SecuritySupport$1",
      "org.apache.xml.dtm.SecuritySupport$2",
      "org.apache.xml.dtm.SecuritySupport$3",
      "org.apache.xml.dtm.SecuritySupport$6",
      "org.apache.xml.dtm.ref.DTMManagerDefault",
      "org.apache.xml.dtm.ref.ExtendedType",
      "org.apache.xml.dtm.ref.ExpandedNameTable",
      "org.apache.xml.dtm.ref.ExpandedNameTable$HashEntry",
      "org.apache.xpath.SourceTreeManager",
      "org.apache.xpath.XPathContext$XPathExpressionContext",
      "org.apache.xpath.VariableStack",
      "org.apache.xalan.transformer.StackGuard",
      "org.apache.xalan.transformer.CountersTable",
      "uk.ac.sanger.artemis.EntryVector",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.ActionVector",
      "org.emboss.jemboss.JembossParams",
      "org.emboss.jemboss.gui.Browser",
      "uk.ac.sanger.artemis.circular.Graph",
      "uk.ac.sanger.artemis.circular.GCGraph",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.batik.svggen.SVGGraphics2D",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "org.apache.batik.svggen.SVGGraphics2DRuntimeException",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.log4j.Level",
      "org.apache.log4j.Priority",
      "org.apache.commons.logging.impl.Log4JLogger",
      "org.apache.log4j.Category",
      "org.apache.log4j.Logger",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.spi.RootLogger",
      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.log4j.or.RendererMap",
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      "org.biojava.bio.symbol.SimpleAtomicSymbol",
      "org.biojava.utils.cache.KeyedWeakReference",
      "org.biojava.bio.seq.io.WordTokenization",
      "org.biojava.bio.seq.io.NameTokenization",
      "org.biojava.bio.symbol.AbstractManyToOneTranslationTable",
      "org.biojava.bio.symbol.SimpleManyToOneTranslationTable",
      "org.biojava.bio.symbol.SimpleGeneticCodeTable",
      "org.biojava.bio.symbol.AbstractSymbolList$ListView",
      "org.biojava.bio.BioException",
      "org.biojava.bio.symbol.IllegalSymbolException",
      "org.biojava.bio.BioError",
      "org.biojava.bio.seq.RNATools",
      "org.biojava.bio.seq.DNATools",
      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "uk.ac.sanger.artemis.io.ChadoCanonicalGene",
      "uk.ac.sanger.artemis.io.GFFStreamFeature",
      "uk.ac.sanger.artemis.io.ReadFormatException",
      "uk.ac.sanger.artemis.io.BioJavaEntry",
      "uk.ac.sanger.artemis.io.LocationParseException",
      "uk.ac.sanger.artemis.io.FastaStreamSequence",
      "org.apache.xalan.templates.WhiteSpaceInfo",
      "org.apache.xalan.processor.WhitespaceInfoPaths",
      "uk.ac.sanger.artemis.util.TextDocument",
      "org.apache.xml.serializer.ToUnknownStream",
      "org.apache.xml.serializer.AttributesImplSerializer",
      "org.apache.xml.serializer.ElemContext",
      "org.apache.xml.serializer.ToXMLStream",
      "org.apache.xml.serializer.ToStream$BoolStack",
      "org.apache.xml.serializer.EncodingInfo",
      "org.apache.xml.serializer.CharInfo",
      "org.apache.xml.serializer.CharInfo$1",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.NamespaceMappings$Stack",
      "org.apache.xml.serializer.NamespaceMappings$MappingRecord",
      "org.apache.batik.bridge.SVGAElementBridge$CursorHolder"
    );
  }
}
