/*
 *   Copyright (c) 2007 John Weaver
 *   2012: ported to shogun by Chiyuan Zhang
 *
 *   This program is free software; you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation; either version 2 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program; if not, write to the Free Software
 *   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307 USA
 */

#include <shogun/mathematics/munkres.h>

#include <iostream>
#include <cmath>

using namespace shogun;

bool Munkres::find_uncovered_in_matrix(double item, int &row, int &col)
{
	for (row=0; row < matrix.num_rows; row++)
		if (!row_mask[row])
			for (col=0; col < matrix.num_cols; col++)
				if (!col_mask[col])
					if (matrix(row,col) == item)
						return true;

	return false;
}

bool Munkres::pair_in_list(const std::pair<int,int> &needle, const std::list<std::pair<int,int> > &haystack)
{
	for (std::list<std::pair<int,int> >::const_iterator i=haystack.begin(); i != haystack.end(); i++)
	{
		if ( needle == *i )
			return true;
	}

	return false;
}

int Munkres::step1(void)
{
	for (int row=0; row < matrix.num_rows; row++)
		for (int col=0; col < matrix.num_cols; col++)
			if (matrix(row,col) == 0)
			{
				bool isstarred=false;
				for (int nrow=0; nrow < matrix.num_rows; nrow++)
					if (mask_matrix(nrow,col) == STAR)
					{
						isstarred=true;
						break;
					}

				if (!isstarred)
				{
					for (int ncol=0; ncol < matrix.num_cols; ncol++)
						if ( mask_matrix(row,ncol) == STAR )
						{
							isstarred=true;
							break;
						}
				}

				if (!isstarred)
				{
					mask_matrix(row,col)=STAR;
				}
			}

	return 2;
}

int Munkres::step2(void)
{
	int rows=matrix.num_rows;
	int cols=matrix.num_cols;
	int covercount=0;
	for (int row=0; row < rows; row++)
		for (int col=0; col < cols; col++)
			if (mask_matrix(row,col) == STAR)
			{
				col_mask[col]=true;
				covercount++;
			}

	int k=rows < cols ? rows : cols;

	if (covercount >= k)
	{
		return 0;
	}

	return 3;
}

int Munkres::step3(void)
{
	/*
	   Main Zero Search

	   1. Find an uncovered Z in the distance matrix and prime it. If no such zero exists, go to Step 5
	   2. If No Z* exists in the row of the Z', go to Step 4.
	   3. If a Z* exists, cover this row and uncover the column of the Z*. Return to Step 3.1 to find a new Z
	   */
	if (find_uncovered_in_matrix(0, saverow, savecol))
	{
		mask_matrix(saverow,savecol)=PRIME; // prime it.
	}
	else
	{
		return 5;
	}

	for (int ncol = 0; ncol < matrix.num_cols; ncol++)
		if (mask_matrix(saverow,ncol) == STAR)
		{
			row_mask[saverow]=true; //cover this row and
			col_mask[ncol]=false; // uncover the column containing the starred zero
			return 3; // repeat
		}

	return 4; // no starred zero in the row containing this primed zero
}

int Munkres::step4(void)
{
	int rows=matrix.num_rows;
	int cols=matrix.num_cols;

	std::list<std::pair<int,int> > seq;
	// use saverow, savecol from step 3.
	std::pair<int,int> z0(saverow, savecol);
	std::pair<int,int> z1(-1,-1);
	std::pair<int,int> z2n(-1,-1);
	seq.insert(seq.end(), z0);
	int row, col=savecol;
	/*
	   Increment Set of Starred Zeros

	   1. Construct the ``alternating sequence'' of primed and starred zeros:

	   Z0 : Unpaired Z' from Step 4.2
	   Z1 : The Z* in the column of Z0
	   Z[2N] : The Z' in the row of Z[2N-1], if such a zero exists
	   Z[2N+1] : The Z* in the column of Z[2N]

	   The sequence eventually terminates with an unpaired Z' = Z[2N] for some N.
	*/
	bool madepair;
	do
	{
		madepair=false;
		for (row=0; row < rows; row++)
			if (mask_matrix(row,col) == STAR)
			{
				z1.first=row;
				z1.second=col;
				if (pair_in_list(z1, seq))
					continue;

				madepair=true;
				seq.insert(seq.end(), z1);
				break;
			}

		if (!madepair)
			break;

		madepair=false;

		for (col = 0; col < cols; col++)
			if (mask_matrix(row,col) == PRIME)
			{
				z2n.first=row;
				z2n.second=col;
				if (pair_in_list(z2n, seq))
					continue;
				madepair=true;
				seq.insert(seq.end(), z2n);
				break;
			}
	}
	while (madepair);

	for (std::list<std::pair<int,int> >::iterator i=seq.begin();
		i != seq.end();
		i++)
	{
		// 2. Unstar each starred zero of the sequence.
		if (mask_matrix(i->first,i->second) == STAR)
			mask_matrix(i->first,i->second)=NORMAL;

		// 3. Star each primed zero of the sequence,
		// thus increasing the number of starred zeros by one.
		if (mask_matrix(i->first,i->second) == PRIME)
			mask_matrix(i->first,i->second)=STAR;
	}

	// 4. Erase all primes, uncover all columns and rows,
	for (int rowi=0; rowi < mask_matrix.num_rows; rowi++)
	{
		for (int coli=0; coli < mask_matrix.num_cols; coli++)
		{
			if (mask_matrix(rowi,coli) == PRIME)
				mask_matrix(rowi,coli) = NORMAL;
		}
	}

	for (int i=0; i < rows; i++)
		row_mask[i]=false;

	for (int i=0; i < cols; i++)
		col_mask[i]=false;

	// and return to Step 2.
	return 2;
}

int Munkres::step5(void)
{
	int rows=matrix.num_rows;
	int cols=matrix.num_cols;
	/*
	   New Zero Manufactures

	   1. Let h be the smallest uncovered entry in the (modified) distance matrix.
	   2. Add h to all covered rows.
	   3. Subtract h from all uncovered columns
	   4. Return to Step 3, without altering stars, primes, or covers.
	*/
	double h=0;
	for (int row=0; row < rows; row++)
	{
		if (!row_mask[row])
			for (int col=0; col < cols; col++)
				if (!col_mask[col])
					if ((h > matrix(row,col) && matrix(row,col) != 0) || h == 0)
						h = matrix(row,col);
	}

	for (int row=0; row < rows; row++)
		if (row_mask[row])
			for (int col=0; col < cols; col++)
				matrix(row,col)+=h;

	for (int col=0; col < cols; col++)
		if (!col_mask[col])
			for (int row=0; row < rows; row++)
				matrix(row,col)-=h;

	return 3;
}

void Munkres::solve(SGMatrix<double> &m)
{
	// Linear assignment problem solution
	// [modifies matrix in-place.]
	// matrix(row,col): row major format assumed.

	// Assignments are remaining 0 values
	// (extra 0 values are replaced with -1)

	double highValue=0;
	for (int row=0; row < m.num_rows; row++)
	{
		for (int col=0; col < m.num_cols; col++)
		{
			if (m(row,col) != INFINITY && m(row,col) > highValue)
				highValue = m(row,col);
		}
	}
	highValue++;

	for (int row=0; row < m.num_rows; row++)
		for (int col=0; col < m.num_cols; col++)
			if (m(row,col) == INFINITY)
				m(row,col)=highValue;

	bool notdone=true;
	int step=1;

	mask_matrix.zero();
	std::copy(m.matrix, m.matrix + m.num_cols*m.num_rows, matrix.matrix);
	// STAR == 1 == starred, PRIME == 2 == primed

	row_mask=SG_MALLOC(bool, matrix.num_rows);
	col_mask=SG_MALLOC(bool, matrix.num_cols);
	for (int i=0; i < matrix.num_rows; i++)
		row_mask[i] = false;

	for (int i=0; i < matrix.num_cols; i++)
		col_mask[i] = false;

	while (notdone)
	{
		switch (step)
		{
		case 0:
			notdone=false;
			break;
		case 1:
			step=step1();
			break;
		case 2:
			step=step2();
			break;
		case 3:
			step=step3();
			break;
		case 4:
			step=step4();
			break;
		case 5:
			step=step5();
			break;
		}
	}

	// Store results
	for (int row=0; row < matrix.num_rows; row++)
		for (int col=0; col < matrix.num_cols; col++)
			if (mask_matrix(row,col) == STAR)
				matrix(row,col)=0;
			else
				matrix(row,col)=-1;

	std::copy(matrix.matrix, matrix.matrix + m.num_cols*m.num_rows, m.matrix);

	SG_FREE(row_mask);
	SG_FREE(col_mask);
}

