* commit 1b1130d2ca8f48e97737caa405ede519abe70253
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 17 12:53:53 2013 +0100
| 
|     Preparing for new Release shogun_2.1.0
| 
| M	doc/Doxyfile
|  
* commit 6ce44315fdc21bfee6876d006201530c3c28d885
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 17 12:15:18 2013 +0100
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 970299480069e165da69e6dae5a32e0aad7ae116
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 17 15:14:10 2013 +0400
| 
|     Fixed date of release
| 
| M	src/NEWS
|  
* commit 89d073bcdcbb14cbec897f632d6585969ed3a467
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 17 15:13:09 2013 +0400
| 
|     SGString is not based on SGReferencedData
| 
| M	src/NEWS
|  
* commit a0e0d95f03d03528e89e5b56bc7767846c9a064e
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 17 15:05:16 2013 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit cc2410f56db398e71e34ffd651645682fc9905b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 17 09:46:50 2013 +0100
| 
|     support various label types in static interface
| 
| M	src/shogun/ui/SGInterface.cpp
|  
* commit b97829a764ec077b07169939382bc9ae30e301d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 16 22:11:44 2013 +0100
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 731cbde006d6cf9ee7f8d6c188b211de26a3d986
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 16 21:39:41 2013 +0100
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit ce73ba244b96ffdf01f132184f53c831df8197ff
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 17 05:16:10 2013 +0400
| 
|     Last update of tapkee before release
|     
|     - Much more doc
|     - Various code improvements (better naming, less warnings)
| 
| M	src/shogun/lib/tapkee/callback/callback_traits.hpp
| M	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| M	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/routines/spe.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/utils/any.hpp
| M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| M	src/shogun/lib/tapkee/utils/logging.hpp
| M	src/shogun/lib/tapkee/utils/matrix.hpp
| M	src/shogun/lib/tapkee/utils/parameters.hpp
|  
* commit 0e282c746ca3711b46d31496e6351c33663cbcc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 16 21:25:39 2013 +0100
| 
|     release fixes
|     
|     - disable json serialization for now
|     - rename OCTAVE_LOADPATH -> OCTAVE_PATH
| 
| M	examples/undocumented/lua_modular/serialization_complex_example.lua
| M	src/Makefile.template
|  
* commit ec6e14953a4b192a3c9d57ed1a9bb59d39220abc
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Mar 16 23:50:51 2013 +0400
| 
|     Fixed bug with libsvm 3 classes
| 
| M	examples/undocumented/libshogun/modelselection_grid_search_multiclass_svm.cpp
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
|    
*   commit c77af730f686f4d6b29f14b4a647e45c17436160
|\  Merge: fc7f16e a88be17
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Mar 16 22:37:10 2013 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit a88be17180977f29fa5fee9bbfa58bc87e0eecc3
| |\  Merge: 3d7cf1a 51e5322
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Mar 16 11:19:29 2013 -0700
| | | 
| | |     Merge pull request #942 from karlnapf/master
| | |     
| | |     new example for model selection multiclass svm
| | |    
| | * commit 51e53229e94afb57b898ac86931ab5f6238fc9bb
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sat Mar 16 18:18:13 2013 +0000
| |   
| |       added a modelselection example for multiclass lib svm
| |   
| |   M	examples/undocumented/libshogun/Makefile
| |   A	examples/undocumented/libshogun/modelselection_grid_search_multiclass_svm.cpp
| |   
* | commit fc7f16e0ba181fbd2b0c4d27be0cfccf6b55a562
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Mar 16 21:34:59 2013 +0400
| | 
| |     updated changelog
| | 
| | M	src/ChangeLog
| |   
* | commit a77b5baaa22e07fb8e0b597b4452adce1abefcd7
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Sat Mar 16 21:04:54 2013 +0400
|   
|       updated changelog
|   
|   M	src/ChangeLog
|    
*   commit 3d7cf1a359a310f1e22eff5334b9fb6a3b684ea8
|\  Merge: 4c7fc6c c758bf6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Mar 16 03:55:18 2013 -0700
| | 
| |     Merge pull request #941 from vigsterkr/master
| |     
| |     use -a for tee as that's more widespread among OSes
| |   
| * commit c758bf6f045a7e169c5696fef4e6c616c0c7d6e3
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Sat Mar 16 10:23:35 2013 +0100
|   
|       use -a for tee as that's more widespread among OSes
|   
|   M	Makefile
|  
* commit 4c7fc6c1d7e7ff42dc22daabbcd62805a5a24043
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 15 15:00:45 2013 +0100
| 
|     don't call inplace new in octave_static for sparse vectors
| 
| M	src/interfaces/octave_static/OctaveInterface.cpp
|  
* commit 7f78f8dd8701a00aedacec6e6855661466776e22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 15 12:10:24 2013 +0100
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit d546cb6f33dfb3c7d228980851f3c37ad29c7f30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 15 12:07:48 2013 +0100
| 
|     release makefile fixes
|     
|     -run configure before make ChangeLog to ensure .config is present
|     -don't make distclean to ensure that lib/versionstring.h is still present
| 
| M	Makefile
|  
* commit 20c20dad615678d06845f7e04ea3f010c93f2c64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 15 01:05:51 2013 +0100
| 
|     require new tutorial
| 
| M	doc/tutorial
|  
* commit 61981ada2185f65c8a8d6e2ca8c19e9078240b10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 15 01:03:17 2013 +0100
| 
|     update NEWS and add eclipse project files
| 
| M	src/NEWS
| A	src/shogun/.cproject
| A	src/shogun/.settings/language.settings.xml
|  
* commit a03730bd045359e64be67436927da228501877e6
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 15 00:22:32 2013 +0400
| 
|     Resolved a conflict with BMRM stuff
| 
| M	examples/undocumented/python_modular/graphical/so_multiclass_BMRM.py
| M	examples/undocumented/python_modular/graphical/so_multiclass_director_BMRM.py
| M	src/shogun/structure/bmrm_return_value.h
|  
* commit e8ecefe4f27a4716800414e64f374070e45bb30c
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Mar 14 23:29:42 2013 +0400
| 
|     Updated data
| 
| M	data
|  
* commit b9c4d1a227a8f511839e08b58ec12fdf471093f5
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Mar 14 23:14:40 2013 +0400
| 
|     updated data
| 
| M	data
|  
* commit 436952b23991277a31418a1668195c3310e5b674
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Mar 14 22:51:41 2013 +0400
| 
|     Fixed bmrm_return_value issues
| 
| M	examples/undocumented/python_modular/graphical/so_multiclass_BMRM.py
| M	examples/undocumented/python_modular/graphical/so_multiclass_director_BMRM.py
| M	src/interfaces/modular/Structure.i
| M	src/interfaces/modular/Structure_includes.i
| A	src/shogun/structure/bmrm_return_value.h
| M	src/shogun/structure/libbmrm.h
|    
*   commit 5a9e1c817f88e9f7266888f84d5634436741bf30
|\  Merge: 64d20d4 36120de
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 11:31:01 2013 -0700
| | 
| |     Merge pull request #939 from karlnapf/master
| |     
| |     more integration test fixes
| |   
| * commit 36120ded54602981eb32a53174d09589d3c15ae3
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Mar 14 18:30:01 2013 +0000
|   
|       more working integration tests
|   
|   M	examples/undocumented/python_modular/evaluation_clustering.py
|   M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
|   M	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
|    
*   commit 64d20d4bb79a26c832872d5d32760707de89915a
|\  Merge: 91d957d a697aab
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 11:14:16 2013 -0700
| | 
| |     Merge pull request #938 from karlnapf/master
| |     
| |     more integration test fixes
| |   
| * commit a697aabc67519c05cc478c0202bbd52e618b5a64
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Mar 14 21:53:57 2013 +0400
| | 
| |     Hopefully last update of tapkee before release
| | 
| | M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| |     
| *   commit f5d494345bbbbec4aa85107b912a3abf70f75e1f
| |\  Merge: 5b7f8d7 2436f2e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 18:09:24 2013 +0000
| | | 
| | |     Merge branch 'bugsprint'
| | |    
| | * commit 2436f2e684be12153d3602bd388f1a2824aeddf8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 18:08:50 2013 +0000
| | | 
| | |     updated example to work with data that makes sense
| | | 
| | | M	examples/undocumented/python_modular/regression_kernel_ridge_modular.py
| | |    
| | * commit 4aad85416f02a54391ae57a3d7fa62a6847ce0ae
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 17:56:39 2013 +0000
| | | 
| | |     made two more integration tests work
| | | 
| | | M	examples/undocumented/python_modular/evaluation_clustering_simple.py
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| | |    
| | * commit 20fca14ad5f4bfd1f618cb9dd58287828255c219
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 17:38:03 2013 +0000
| | | 
| | |     really fixed it now
| | | 
| | | M	tests/unit/regression/GaussianProcessRegression_unittest.cc
| | |    
| | * commit 35cbc5149b6e997ba5c38c1250c652c0ab4b851b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 17:32:22 2013 +0000
| | | 
| | |     fixed memory errors and added asserts again
| | | 
| | | M	tests/unit/regression/GaussianProcessRegression_unittest.cc
| | |    
* | | commit 91d957d412f4f323bbb84f14243540d0494849b1
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Mar 14 21:53:57 2013 +0400
| | | 
| | |     Hopefully last update of tapkee before release
| | | 
| | | M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| | |      
* | |   commit a33c97c4334dc7ca0085fb1e67a722d216d5b3c0
|\ \ \  Merge: 7f80fe7 5b7f8d7
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | /   Date:   Thu Mar 14 10:40:11 2013 -0700
| |/    
|/|         Merge pull request #937 from karlnapf/master
| |         
| |         fixed and enabled GPR unit test
| |   
| * commit 5b7f8d7e7ae0ab703762714d23aefe0e43354d12
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Mar 14 17:39:22 2013 +0000
|   
|       Squashed commit of the following:
|       
|       commit 20fca14ad5f4bfd1f618cb9dd58287828255c219
|       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|       Date:   Thu Mar 14 17:38:03 2013 +0000
|       
|           really fixed it now
|       
|       commit 35cbc5149b6e997ba5c38c1250c652c0ab4b851b
|       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|       Date:   Thu Mar 14 17:32:22 2013 +0000
|       
|           fixed memory errors and added asserts again
|   
|   M	tests/unit/regression/GaussianProcessRegression_unittest.cc
|    
*   commit 7f80fe76d5c9b0f97d90fa3c3c6708abcada5f66
|\  Merge: 5cd042d d06ebf4
| | Author: Viktor Gal <vigsterkr@gmail.com>
| | Date:   Thu Mar 14 10:35:50 2013 -0700
| | 
| |     Merge pull request #936 from vigsterkr/master
| |     
| |     Add check for HAVE_EIGEN3 in ExactInferenceMethod_unittest
| |   
| * commit d06ebf49996c36147047060c754d62a0d1688df5
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Thu Mar 14 18:34:27 2013 +0100
|   
|       Add check for HAVE_EIGEN3 in ExactInferenceMethod_unittest
|   
|   M	tests/unit/regression/gp/ExactInferenceMethod_unittest.cc
|  
* commit 5cd042d83495f5e1789d2ff387809326b3783320
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 14 18:32:26 2013 +0100
| 
|     fix ocr & svr demo
| 
| M	applications/ocr/data/ocr.svm.gz
| M	examples/undocumented/python_modular/graphical/interactive_svr_demo.py
|    
*   commit 1459ba0a45afd4700a43709d91986b94f62ec489
|\  Merge: 333fce5 4110afc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 10:21:15 2013 -0700
| | 
| |     Merge pull request #934 from karlnapf/master
| |     
| |     added a collection of tests/examüples for things that currently do not work
| |   
| * commit 4110afcb7cda05f29564691076ae20cdd4c172f3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 17:14:46 2013 +0000
| | 
| |     added an example for adding new parameters to classes. However this one does not work, must be activated once it works
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_migration_new_buggy.cpp
| |   
| * commit b2313d0d1b38b94686621e5a749b9a1f3c956740
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 17:12:19 2013 +0000
| | 
| |     added a provisory test for multiclass label serialization which has to be activated once this works
| | 
| | A	tests/unit/base/Serialization_unittest.cc
| |   
| * commit 0aa25e8b24d303519c7692a95ed3d6e68ca4f7c3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 17:11:31 2013 +0000
| | 
| |     removed wrongly named file
| | 
| | D	examples/undocumented/libshogun/labels_multiclass_serialization.cpp
| |   
| * commit b51ee305b33fd53544f4ed02e3e38b906f1d21b8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 17:11:23 2013 +0000
| | 
| |     added a test for multiclass serialization
| | 
| | A	examples/undocumented/libshogun/serialization_multiclass_labels.cpp
| |   
| * commit 4da2a23b474958427855af7a978f332d3649cc78
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 17:04:39 2013 +0000
| | 
| |     added an example for multiclass serialization that doesnt work (but runs fine) Once muticlass label serialization work this should be turned into a test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/labels_multiclass_serialization.cpp
| |     
* |   commit 333fce5b7e7472d396f4146a7f1c2a2d7d8fd720
|\ \  Merge: 9e0747f 286c078
| |/  Author: Viktor Gal <vigsterkr@gmail.com>
|/|   Date:   Thu Mar 14 10:20:46 2013 -0700
| |   
| |       Merge pull request #933 from vigsterkr/master
| |       
| |       Add HAVE_EIGEN3 check to GaussianProcessRegression_unittest.cc
| |   
| * commit 286c078b8147b22e3155b0092c06bc2b36049375
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Thu Mar 14 18:13:27 2013 +0100
| | 
| |     Add HAVE_EIGEN3 check to GaussianProcessRegression_unittest.cc
| | 
| | M	tests/unit/regression/GaussianProcessRegression_unittest.cc
| |     
* |   commit 9e0747f4e5fe2d121ae81b1de7422a7cd7413404
|\ \  Merge: b85414b e651665
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 09:15:24 2013 -0700
| | | 
| | |     Merge pull request #932 from karlnapf/master
| | |     
| | |     removed parameter registration for multiclass labels again
| | |    
| * | commit e65166525b07863f522c1bd91cb3e5133304a165
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 16:14:40 2013 +0000
| | | 
| | |     forgot this
| | | 
| | | M	src/shogun/labels/MulticlassLabels.cpp
| | |    
| * | commit d7338cb06341b8eef04a1c49e060793cee780c82
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 16:13:10 2013 +0000
| | | 
| | |     removed parameter registration
| | | 
| | | M	src/shogun/labels/MulticlassLabels.cpp
| | |    
| * | commit 9645d2a8b24252e6920a58ee9c497c8d8328d8bb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 13:03:11 2013 +0000
| | | 
| | |     removed clustering MI since it does not work with integration tests
| | | 
| | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | |    
| * | commit fde6304b8ab53733c44f8e13b0c1ede5e86a1747
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 11:43:59 2013 +0000
| | | 
| | |     added comments on parameter maps
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| * | commit 25b961322c6acb64a41a47014c722bc6726b9275
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Mar 14 11:43:50 2013 +0000
| | | 
| | |     added parameter mapping for new serialisable parameter which currently maps from 0 to 1
| | | 
| | | M	src/shogun/labels/MulticlassLabels.cpp
| | |      
* | |   commit b85414ba0a113b1ac5ced44d4534a8586a230891
|\ \ \  Merge: 83c5966 807d8ca
| | |/  Author: Viktor Gal <vigsterkr@gmail.com>
| |/|   Date:   Thu Mar 14 09:12:51 2013 -0700
| | |   
| | |       Merge pull request #931 from vigsterkr/master
| | |       
| | |       Fix for issue #929 and #930
| | |    
| * | commit 807d8ca02d81f46f3e87a1216c110e1708b4095c
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Mar 14 17:10:11 2013 +0100
| | | 
| | |     Fix for issue #929 and #930
| | |     Release SGVector gaussian sample in CDataGenerator::generate_gaussians
| | | 
| | | M	src/shogun/features/DataGenerator.cpp
| | |      
* | |   commit 83c5966c3096ccb328c028efed78c9dbe3e957d3
|\ \ \  Merge: 041ac8b 55d0cf0
| |/ /  Author: Viktor Gal <vigsterkr@gmail.com>
| | |   Date:   Thu Mar 14 08:14:59 2013 -0700
| | |   
| | |       Merge pull request #924 from vigsterkr/master
| | |       
| | |       Fix for valgrind-per-module make command
| | |    
| * | commit 55d0cf089274c8337eda912f8bf922ef46f6db49
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Mar 14 16:09:00 2013 +0100
| | | 
| | |     Add LD_LIBRARY_PATH for xargs in valgrind-per-module
| | | 
| | | M	tests/unit/Makefile
| | |    
| * | commit 449105724c4ef8d2c33e97786b27e4415769d0e5
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Mar 14 15:42:44 2013 +0100
| | | 
| | |     Fix for previous commit.
| | |     Left out the dependency for valgrind-per-module command
| | | 
| | | M	tests/unit/Makefile
| | |    
* | | commit 041ac8bfd4afc87ea3609c9a9e842c3f944f5cd3
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Mar 14 18:40:10 2013 +0400
| | | 
| | |     Update MulticlassLabels_unittest.cc
| | | 
| | | M	tests/unit/labels/MulticlassLabels_unittest.cc
| | |      
* | |   commit ec0b1583f764005542ec1e9efedacab8f3f42739
|\ \ \  Merge: e7fd05f b03de59
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Mar 14 07:20:20 2013 -0700
| | |   
| | |       Merge pull request #923 from vigsterkr/master
| | |       
| | |       Add new make option for valgrind
| | |    
| * | commit b03de59218b5261f86516e8689bdcb7c7d395bbf
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Thu Mar 14 15:17:29 2013 +0100
| |   
| |       Add new make option for valgrind
| |       'make valgrind-per-module' command runs valgrind on each
| |       unit testing module separately.
| |       (for Heiko with love ;)
| |   
| |   M	tests/unit/Makefile
| |     
* |   commit e7fd05f9333343b56d73a9dc0e7691cee0af0c11
|\ \  Merge: 66c5b51 68e1b97
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Mar 14 04:26:34 2013 -0700
| |   
| |       Merge pull request #921 from karlnapf/master
| |       
| |       serialisation support for multiclass labels
| |   
| * commit 68e1b979b9f6e834cb7976f8c3165438e2c71c7c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 11:23:33 2013 +0000
| | 
| |     made example integration test work by storing everything including the now serialisable multiclass labels
| | 
| | M	examples/undocumented/python_modular/evaluation_clustering.py
| |   
| * commit ea53122fa195a6da3b916879ae26ec4bd3e85cbf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 11:22:52 2013 +0000
| | 
| |     added serialisation support for multiclass labels now that the confidences are stored in a matrix
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| |     
* |   commit 66c5b5180bccdffeeb70f194c9e324e04b5505e7
|\ \  Merge: c80ac5e a76e700
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Mar 14 04:07:37 2013 -0700
| |   
| |       Merge pull request #920 from karlnapf/master
| |       
| |       Some more test fixes
| |   
| * commit a76e7005f090e00a8a10c4663e411ae75a94a2b9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 10:51:35 2013 +0000
| | 
| |     removed output
| | 
| | M	tests/unit/multiclass/LaRank_unittest.cc
| |   
| * commit 1f4b794ffb3c80fb07c9da20af2383318f1fdb86
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 10:51:27 2013 +0000
| | 
| |     test failed before, using more sensible data now
| | 
| | M	tests/unit/multiclass/MulticlassLibLinear_unittest.cc
| |   
| * commit 2ac9e64cb64de4a88092d63ef7128b7510df543f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 10:35:23 2013 +0000
| | 
| |     made tests quiet
| | 
| | M	tests/unit/features/DataGenerators_unittest.cc
| | M	tests/unit/features/SparseFeatures_unittest.cc
| | M	tests/unit/features/StringFeatures_unittest.cc
| | M	tests/unit/statistics/LinearTimeMMD_unittest.cc
| |   
| * commit 032abc1ebfd15c2e52d2ec53b39cc81b1a88dcdf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Mar 14 10:35:11 2013 +0000
| | 
| |     removed debug output
| | 
| | M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
| |   
| * commit 348efb2bba90ef217d8b4b6a5ee036f8e198511a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Mar 14 01:20:38 2013 +0400
| | 
| |     Fixed MC machine confidences allocation
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
| * commit 5fc7151692c81da1e27dcd137f7f2f4406986df4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Mar 14 01:02:42 2013 +0400
| | 
| |     Some improvement for multiclass confidences
| |     
| |     - Changed the way confidences are stored (array of sgvectors -> sgmatrix)
| |     
| |     - Added a unit test for confidences
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | A	tests/unit/labels/MulticlassLabels_unittest.cc
| |   
| * commit 934d00f78e8c4048c38803eb7afde9b2258fa043
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Mar 13 23:59:33 2013 +0400
| | 
| |     Fixed compilation
| | 
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| |   
| * commit 56cea1c5885752511157d327b15c871d0cd7aa58
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Mar 13 23:13:16 2013 +0400
| | 
| |     A big update for Tapkee
| |     
| |     - Fixed a few VS 2012 compilations
| |     - Parallel MDS
| |     - Parallel
| |     - Callbacks folder rearrangement
| |     - Other improvements
| | 
| | A	src/shogun/lib/tapkee/callback/callback_traits.hpp
| | A	src/shogun/lib/tapkee/callback/eigen_callbacks.hpp
| | A	src/shogun/lib/tapkee/callback/neighbor_callback.hpp
| | A	src/shogun/lib/tapkee/callback/pimpl_callbacks.hpp
| | A	src/shogun/lib/tapkee/callback/precomputed_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/eigen_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/neighbor_callback.hpp
| | D	src/shogun/lib/tapkee/callbacks/pimpl_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/precomputed_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/traits.hpp
| | M	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| | M	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| | M	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| | M	src/shogun/lib/tapkee/routines/fa.hpp
| | M	src/shogun/lib/tapkee/routines/isomap.hpp
| | M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| | M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| | M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| | M	src/shogun/lib/tapkee/routines/random_projection.hpp
| | M	src/shogun/lib/tapkee/routines/spe.hpp
| | M	src/shogun/lib/tapkee/tapkee.hpp
| | M	src/shogun/lib/tapkee/tapkee_defines.hpp
| | M	src/shogun/lib/tapkee/tapkee_methods.hpp
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| | M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| |   
| * commit de3862a442ed1e5b52398c61f70b722ccc4e2b3f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 18:51:06 2013 +0000
| | 
| |     some minor changes in order to make integration test work
| | 
| | M	examples/undocumented/python_modular/evaluation_clustering_simple.py
| |   
| * commit 04e7e669b85ac4e080d1ce0159f9f648bad234c5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 18:38:21 2013 +0000
| | 
| |     added new example for clustering evamluation which tests the method on simple toy data in order to decide whether it is good
| | 
| | A	examples/undocumented/python_modular/evaluation_clustering_simple.py
| |   
* | commit c80ac5e045d35c0d37d857e7b3dcec5a926cd7e2
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Mar 14 01:20:38 2013 +0400
| | 
| |     Fixed MC machine confidences allocation
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
* | commit 48366db1a2f832edcae22d05382a91fb4e5bef0d
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Mar 14 01:02:42 2013 +0400
| | 
| |     Some improvement for multiclass confidences
| |     
| |     - Changed the way confidences are stored (array of sgvectors -> sgmatrix)
| |     
| |     - Added a unit test for confidences
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | A	tests/unit/labels/MulticlassLabels_unittest.cc
| |   
* | commit 6e013467d73a06c61fa89c808eaa06927af546e3
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Mar 13 23:59:33 2013 +0400
| | 
| |     Fixed compilation
| | 
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| |   
* | commit d3d518cacac72cf33d7078be3063250c35293c2d
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Mar 13 23:13:16 2013 +0400
| | 
| |     A big update for Tapkee
| |     
| |     - Fixed a few VS 2012 compilations
| |     - Parallel MDS
| |     - Parallel
| |     - Callbacks folder rearrangement
| |     - Other improvements
| | 
| | A	src/shogun/lib/tapkee/callback/callback_traits.hpp
| | A	src/shogun/lib/tapkee/callback/eigen_callbacks.hpp
| | A	src/shogun/lib/tapkee/callback/neighbor_callback.hpp
| | A	src/shogun/lib/tapkee/callback/pimpl_callbacks.hpp
| | A	src/shogun/lib/tapkee/callback/precomputed_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/eigen_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/neighbor_callback.hpp
| | D	src/shogun/lib/tapkee/callbacks/pimpl_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/precomputed_callbacks.hpp
| | D	src/shogun/lib/tapkee/callbacks/traits.hpp
| | M	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| | M	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| | M	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| | M	src/shogun/lib/tapkee/routines/fa.hpp
| | M	src/shogun/lib/tapkee/routines/isomap.hpp
| | M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| | M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| | M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| | M	src/shogun/lib/tapkee/routines/random_projection.hpp
| | M	src/shogun/lib/tapkee/routines/spe.hpp
| | M	src/shogun/lib/tapkee/tapkee.hpp
| | M	src/shogun/lib/tapkee/tapkee_defines.hpp
| | M	src/shogun/lib/tapkee/tapkee_methods.hpp
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| | M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| |     
* |   commit 099f6d22e800a438a479daba146d9d8449d94312
|\ \  Merge: 3b6afdd a478bd6
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Mar 13 10:56:40 2013 -0700
| |   
| |       Merge pull request #919 from karlnapf/master
| |       
| |       Made classic GP regression work again
| |   
| * commit a478bd6c33adb84a67cdeac3c1f1c53c461b6e6b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 17:55:59 2013 +0000
| | 
| |     notice about GPR bug
| | 
| | M	src/NEWS
| |   
| * commit 8654aeb7e07bf07d6da6533bedc0bf50fd543513
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 17:45:56 2013 +0000
| | 
| |     added seed for reproducable results
| | 
| | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| |   
| * commit e07b5f91226aff23aba10a34d7595482b0317eec
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 17:37:55 2013 +0000
| | 
| |     separated std constructor and one with parameter
| | 
| | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | M	src/shogun/regression/gp/GaussianLikelihood.h
| |   
| * commit 5d348e770eba805749e7026efcf63eeb70eee094
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 17:35:22 2013 +0000
| | 
| |     example works for the first time!
| | 
| | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| |   
| * commit 131542408237aad7d0a55f44e2379c062ee12ac9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 17:35:09 2013 +0000
| | 
| |     added a mpore reasonable standard value for the noise parameter and possibility to set in constructor
| | 
| | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | M	src/shogun/regression/gp/GaussianLikelihood.h
| |   
| * commit 68783f6c203314e7fe8a9d2ac0bdbb0670628cb2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:44:55 2013 +0000
| | 
| |     added a unit test for larger test than training data
| | 
| | M	tests/unit/regression/GaussianProcessRegression_unittest.cc
| |   
| * commit 9ac157579d73dd7254986075915da9003fe760fb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:44:45 2013 +0000
| | 
| |     cleaned up
| | 
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   
| * commit b14034c2b3c4304373c71b2325de601c40259b57
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:44:41 2013 +0000
| | 
| |     minor stuff and replaced a (buggy) lapack call by eigen3. This fixed the bug where GPR crashed when there was more test than training data
| | 
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| |   
| * commit 0ea8f9cc1fae00673425f3360fd541d8284488cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:43:54 2013 +0000
| | 
| |     cleaned up a bit
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
| * commit 464ca1e9701622b3129e8499413b126b4701fb6f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:29:18 2013 +0000
| | 
| |     corrected typo
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
| * commit 42a79292ec8311cc2c8f4a4bb94e02189a86e176
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:24:52 2013 +0000
| | 
| |     new unit tests for gp regression with exact inference
| | 
| | A	tests/unit/regression/GaussianProcessRegression_unittest.cc
| | A	tests/unit/regression/gp/ExactInferenceMethod_unittest.cc
| |   
| * commit 58366b5899ed5b890fd27ca379780023bd8a296c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:24:29 2013 +0000
| | 
| |     added a simply GP regression example
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/regression_gaussian_process_simple_exact.cpp
| |   
| * commit 8bd57ff2b969f63f66f29f8ddc7b9c039a33c262
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:23:54 2013 +0000
| | 
| |     replaced lapack by eigen3 calls and make code much easier to read
| | 
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   
| * commit f37c2d87321ab9dc71c77a8d615343d4510c6ae6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:23:31 2013 +0000
| | 
| |     added a note
| | 
| | M	src/shogun/regression/gp/InferenceMethod.h
| |   
| * commit 7c25b13b5d880ea87aa89f28a3c3e42850300855
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Mar 13 15:23:17 2013 +0000
| | 
| |     fixes the bug that GP regression returns nonsense
| | 
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/GaussianProcessRegression.h
| |   
| * commit b847c03973f7855bb5a3f873a6ce081aebe98e8e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 11 16:27:17 2013 +0000
| | 
| |     added more test cases and make use of parameter list
| | 
| | M	examples/undocumented/python_modular/library_time.py
| |   
| * commit 1a024d413ab76903a24c0876f12b9e2bbd15be99
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Mon Mar 11 16:16:42 2013 +0000
|   
|       added additional parameter to mean shift data generator (select dimension of shift) and make sure that tests/examples still work
|   
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
|   M	tests/unit/features/DataGenerators_unittest.cc
|   M	tests/unit/kernel/CustomKernel_unittest.cc
|   M	tests/unit/statistics/QuadraticTimeMMD_unittest.cc
|  
* commit 3b6afdd8ed5266523fff13bf0b061c944cac25c4
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Mar 13 10:58:41 2013 +0400
| 
|     Compilation fix for tapkee code which fails w/o ARPACK
| 
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
|  
* commit f4696ee7d06ba8ed097ed45ff74ac4c78ec12a44
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Mar 13 02:10:17 2013 +0400
| 
|     A fix for director contingency evaluation class
| 
| M	src/shogun/evaluation/DirectorContingencyTableEvaluation.h
|  
* commit b6c25aa6ddcc3dd07f1d94f2970fb331bc9a8702
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Tue Mar 12 19:36:11 2013 +0400
| 
|     An attempt to get MDS example make more sense
| 
| M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
|    
*   commit 1e89f0c64f6ccc62ed242c2d7d25b190efcc2d27
|\  Merge: 84e4b13 11d764e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 16:02:48 2013 -0700
| | 
| |     Merge pull request #915 from karlnapf/master
| |     
| |     example updates in order to make test-suite work
| |   
| * commit 11d764e59461c41a833bb18ea156614519c267e4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 23:01:47 2013 +0000
| | 
| |     new easy toy data data for example
| | 
| | M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| |   
| * commit 4c9352a018c5c5adfc91c11b02110f5d5ae6b583
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 23:01:16 2013 +0000
| | 
| |     empty line to make things look nicer
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| |   
| * commit d3f1eeefc1d4ac709b8f4879654a77eb3a08f786
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 22:51:37 2013 +0000
| | 
| |     used a more sensible data set to actually see whether the method works
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| |   
| * commit 4b7ded480f37fdefe091557d6f264f25757f5c67
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 20:49:03 2013 +0000
| | 
| |     added unit-test for LaRank which asserts basic functionality of classifier
| | 
| | A	tests/unit/multiclass/LaRank_unittest.cc
| |   
| * commit 5131bb50ee2e46d9965f21d94a68c4e6557c3f2c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 20:39:54 2013 +0000
| | 
| |     made example way better (random input data means non-sense output) and prepared for unit-test
| | 
| | M	examples/undocumented/libshogun/classifier_larank.cpp
| |   
* | commit 84e4b13917bd2e0d86e2640df00db768fcf40620
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Mar 11 02:06:37 2013 +0400
| | 
| |     Added isomap unittest
| | 
| | A	tests/unit/converter/Isomap_unittest.cc
| |   
* | commit 13ba0c7f37e58c23b0fc0a70f54933d428167f81
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Mar 11 02:02:09 2013 +0400
| | 
| |     A few patches for tapkee
| | 
| | M	src/shogun/lib/tapkee/tapkee.hpp
| | M	src/shogun/lib/tapkee/tapkee_exceptions.hpp
| | M	src/shogun/lib/tapkee/utils/parameters.hpp
| |     
* |   commit 2f9db76ec1bef4e598a765ffd50cfd67c6ce32df
|\ \  Merge: 6a89ce1 56ce595
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Mar 10 12:44:39 2013 -0700
| |   
| |       Merge pull request #914 from karlnapf/master
| |       
| |       example remove warning
| |   
| * commit 56ce595b10cdd742414f99b95552b6738d76d38a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 19:27:15 2013 +0000
| | 
| |     fixed copy/paste error
| | 
| | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| |   
| * commit ac2044bd27f3c7162de362d6bef2b0621c66dfa3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 19:25:42 2013 +0000
| | 
| |     changed training data to be (probably) linearly seperable to avoid warnings
| | 
| | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| |   
| * commit 83bc0426c9801ae745ac509843068a019652a843
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Mar 10 19:20:21 2013 +0000
| | 
| |     changed training data to be (probably) linearly seperable to avoid warnings
| | 
| | M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| |   
| * commit 92439e34ed87bda59a58be24ee52169bb877f38f
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sun Mar 10 18:33:57 2013 +0000
|   
|       removed unstable warning and added some proper assertion messages
|   
|   M	src/shogun/multiclass/MulticlassLogisticRegression.cpp
|  
* commit 6a89ce13a1961ccab9863c395461a3aed49bc836
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 10 23:10:24 2013 +0400
| 
|     Removed unstable from MC LR
| 
| M	src/shogun/multiclass/MulticlassLogisticRegression.cpp
|  
* commit da237a41d4932068ae37ec5121b263a03b7fcb48
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 10 23:09:44 2013 +0400
| 
|     Added tapkee license file
| 
| A	src/LICENSE.tapkee
|  
* commit cfb5bf76fe67654d01a80895b71226a50b729f0b
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 10 21:56:34 2013 +0400
| 
|     Big update for tapkee
|     
|     - Relicensed code to BSD
|     - Better includes arrangement
|     - Doc improvements
| 
| M	src/shogun/lib/tapkee/callbacks/eigen_callbacks.hpp
| A	src/shogun/lib/tapkee/callbacks/neighbor_callback.hpp
| M	src/shogun/lib/tapkee/callbacks/pimpl_callbacks.hpp
| A	src/shogun/lib/tapkee/callbacks/precomputed_callbacks.hpp
| M	src/shogun/lib/tapkee/callbacks/traits.hpp
| M	src/shogun/lib/tapkee/neighbors/connected.hpp
| M	src/shogun/lib/tapkee/neighbors/covertree.hpp
| M	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| M	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| M	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/fa.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/isomap.hpp
| M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| M	src/shogun/lib/tapkee/routines/methods_traits.hpp
| M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/routines/random_projection.hpp
| M	src/shogun/lib/tapkee/routines/spe.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_exceptions.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/tapkee_projection.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/utils/any.hpp
| M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| M	src/shogun/lib/tapkee/utils/fibonacci_heap.hpp
| M	src/shogun/lib/tapkee/utils/logging.hpp
| M	src/shogun/lib/tapkee/utils/matrix.hpp
| M	src/shogun/lib/tapkee/utils/parameters.hpp
| M	src/shogun/lib/tapkee/utils/time.hpp
|  
* commit caa80db4b8e75e0222780c0449a0afc1967bf3ba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 9 21:18:06 2013 +0100
| 
|     blacklist director based examples and require new data version
| 
| M	data
| M	examples/undocumented/python_modular/distance_director_euclidean_modular.py
| M	examples/undocumented/python_modular/evaluation_director_contingencytableevaluation_modular.py
| M	examples/undocumented/python_modular/features_dense_zero_copy_modular.py
| M	examples/undocumented/python_modular/features_director_dot_modular.py
| M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| M	tests/integration/python_modular/generator.py
|    
*   commit 1f4a9514dd40081e5161d74f6cb66821643a9648
|\  Merge: dd32469 b432027
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Mar 9 07:26:55 2013 -0800
| | 
| |     Merge pull request #913 from gsomix/fixes
| |     
| |     Small pack of fixes: buffer protocol and compiling
| |   
| * commit b432027d1ed785a947b78ee9832b4d463bffe376
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sat Mar 9 19:24:19 2013 +0400
| | 
| |     fix: checking python's version for buffer protocol
| | 
| | M	src/interfaces/python_modular/protocols_helper.i
| |   
| * commit c291dc27317da6483b31857eff7d9d620981c508
|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|   Date:   Sat Mar 9 16:27:03 2013 +0400
|   
|       added forgotten include
|   
|   M	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
|  
* commit dd324691ef7b36451b82357ee8295e5f40799086
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 22:47:48 2013 +0100
| 
|     fix doxygen doc
| 
| M	src/shogun/evaluation/CrossValidation.h
|    
*   commit f049173f7cb84fe016a63fb364206b1fab98c8c9
|\  Merge: 76d24b2 ab46e89
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 8 13:30:07 2013 -0800
| | 
| |     Merge pull request #912 from karlnapf/master
| |     
| |     fix swig-R clash
| |   
| * commit ab46e89d4f2c55fd32a57ed96a46cbb23680653d
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Mar 8 21:27:29 2013 +0000
|   
|       renamed result variable to avoid swig-R crash
|   
|   M	src/shogun/evaluation/CrossValidation.h
|  
* commit 76d24b25e83d0cb3bf68cfd2b4b62076d328e505
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 22:10:34 2013 +0100
| 
|     add doc to obtain_from_generic in crossvalidation
| 
| M	src/shogun/evaluation/CrossValidation.h
|  
* commit ff466092a9398bc9945f3b199ab88752c1c14ca2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 22:10:20 2013 +0100
| 
|     require new data version
| 
| M	data
|  
* commit 0e23ae57de4d7c8e106d932ea0e2b288af911598
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 21:46:45 2013 +0100
| 
|     muten examples
| 
| M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| M	examples/undocumented/python_modular/statistics_hsic.py
| M	examples/undocumented/python_modular/statistics_kmm.py
| M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| M	examples/undocumented/python_modular/statistics_mmd_kernel_selection_combined.py
| M	examples/undocumented/python_modular/statistics_mmd_kernel_selection_single.py
| M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
|  
* commit 8a5b2b08dc03e9a498d53c363077d1bb7b4561c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 20:45:24 2013 +0100
| 
|     further example fixes
|     
|     - completely disable vw examples (broken)
|     - further muten examples
| 
| M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| M	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| M	examples/undocumented/python_modular/serialization_complex_example.py
| M	examples/undocumented/python_modular/serialization_string_kernels_modular.py
| M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| M	examples/undocumented/python_modular/streaming_vw_modular.py
| M	examples/undocumented/python_modular/structure_hmsvm_bmrm.py
| M	examples/undocumented/python_modular/transfer_multitask_clustered_logistic_regression.py
| M	src/shogun/features/SubsetStack.cpp
| M	src/shogun/structure/DualLibQPBMSOSVM.cpp
|    
*   commit 9fe4085ef00a8086cebd859c42103f0c1fcfcadb
|\  Merge: f7f3431 45e0d17
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 8 11:37:35 2013 -0800
| | 
| |     Merge pull request #911 from karlnapf/master
| |     
| |     added integration tests
| |   
| * commit 45e0d171e6f45721e09ff03944bfe5f007262f23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 8 19:36:09 2013 +0000
| | 
| |     made some python examples work with integration tests
| |     (split the mmd kernel selection example)
| | 
| | M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | M	examples/undocumented/python_modular/serialization_string_kernels_modular.py
| | M	examples/undocumented/python_modular/statistics_hsic.py
| | M	examples/undocumented/python_modular/statistics_kmm.py
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | D	examples/undocumented/python_modular/statistics_mmd_kernel_selection.py
| | A	examples/undocumented/python_modular/statistics_mmd_kernel_selection_combined.py
| | A	examples/undocumented/python_modular/statistics_mmd_kernel_selection_single.py
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
| * commit 7e2e1740a60dacba092b0fcb731fe2588f242dde
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 8 19:36:01 2013 +0000
| | 
| |     made CrossValidatioResult serializable
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| |   
| * commit c6db0b3d55ea7db3d6eba37d9c82e393e195c099
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 8 19:34:49 2013 +0000
| | 
| |     example descriptoins for kernel test statistics
| | 
| | A	examples/descriptions/modular/statistics_hsic.txt
| | A	examples/descriptions/modular/statistics_linear_time_mmd.txt
| | A	examples/descriptions/modular/statistics_mmd_kernel_selection.txt
| | A	examples/descriptions/modular/statistics_quadratic_time_mmd.txt
| |   
* | commit f7f34318e539b1433ef721636c860a5e365bfdbe
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Mar 8 23:31:33 2013 +0400
| | 
| |     Some updates for NEWS
| | 
| | M	src/NEWS
| |   
* | commit 60de6d383f7c633b4a699db4d19ddc762bbb1b14
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Mar 8 19:23:50 2013 +0100
|   
|       fix whitespaces in NEWS
|   
|   M	src/NEWS
|  
* commit f91efd50d732c78c65ae1f388d1886a5a1934cac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 18:52:49 2013 +0100
| 
|     drop static product function from SGVector
| 
| M	src/shogun/lib/SGVector.h
|  
* commit ecc4a61c095b41ec7293470db5fdb6a6663a0344
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 18:49:03 2013 +0100
| 
|     remove unused (but troublesome) includes of libbmrm, libppbm and libp3bm
| 
| M	src/interfaces/modular/Structure.i
| M	src/interfaces/modular/Structure_includes.i
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 116a810cd33b91dc72cd0f6748ca792f5b35ee20
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 20:38:10 2013 +0400
| 
|     An attempt to fix wdsvmocas
| 
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
|  
* commit fb68dbcbc7514c7a572bfcc2d24184339624a84b
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 20:23:56 2013 +0400
| 
|     Some fixes for converters doc
| 
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/FactorAnalysis.h
| M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| M	src/shogun/converter/Isomap.h
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalityPreservingProjections.h
| M	src/shogun/converter/LocallyLinearEmbedding.h
| M	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
| M	src/shogun/converter/StochasticProximityEmbedding.h
|  
* commit 6abf4337b902c3226f4639c28046a9d16ce5c210
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 20:14:35 2013 +0400
| 
|     Fixed SO multiclass example
| 
| M	examples/undocumented/python_modular/so_multiclass.py
|  
* commit 655fc3dc4e0e2bec427d1e481882777bb29f2453
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 16:08:24 2013 +0100
| 
|     make x-val example non-verbose
| 
| M	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
|  
* commit 780178247a0705f89b1ce74e2b6c640217f53443
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 19:03:23 2013 +0400
| 
|     Correct fix for LA
| 
| M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
|  
* commit 2f3cbef4d541c4e4d7c6ee9350cf7514f3a9a058
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 15:55:46 2013 +0100
| 
|     move more code into #ifdef PTHREAD
| 
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
|  
* commit d0654a4d5b17cc40b58ac27d338f7f717e4f9554
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 15:55:35 2013 +0100
| 
|     fix serialization of mask table
| 
| M	src/shogun/features/StringFeatures.cpp
|  
* commit a0f490e32e3c6b3d645e7a102effe627e98e7319
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 15:55:08 2013 +0100
| 
|     shareboost: don't print progress if not in debug mode
| 
| M	src/shogun/multiclass/ShareBoost.cpp
|  
* commit 56122795922c3109fc2fff4c7b5cab748227c0ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 15:54:15 2013 +0100
| 
|     fix various examples
|     
|     - to not print anything
|     - wrong function names (or file name euclidian vs euclidean)
| 
| M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| M	examples/undocumented/python_modular/classifier_multiclass_relaxedtree.py
| M	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| A	examples/undocumented/python_modular/distance_director_euclidean_modular.py
| D	examples/undocumented/python_modular/distance_director_euclidian_modular.py
| A	examples/undocumented/python_modular/distance_euclidean_modular.py
| D	examples/undocumented/python_modular/distance_euclidian_modular.py
| M	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
| M	examples/undocumented/python_modular/evaluation_director_contingencytableevaluation_modular.py
| M	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
| M	examples/undocumented/python_modular/features_dense_protocols_modular.py
| M	examples/undocumented/python_modular/features_director_dot_modular.py
| M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	examples/undocumented/python_modular/so_multiclass.py
| M	examples/undocumented/python_modular/structure_hmsvm_mosek.py
|  
* commit b560a521af3c165abb4c2fb42b01101cd0f013f7
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 18:53:23 2013 +0400
| 
|     Adjusted width to avoid errors in laplacian eigenmaps
| 
| M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
|  
* commit ad1a6e1f128d4c79d0de2912e221a8319effa1f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 14:27:04 2013 +0100
| 
|     fix a minor warnings when pthreads are not available
| 
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/structure/CCSOSVM.cpp
|  
* commit 5d4172dee86ec7fa80640cf43e0b0324e0d2b237
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 13:57:59 2013 +0100
| 
|     remove NO_IMPORT define and numpy include in sg_print_functions.cpp
|     
|     this fixes the long standing warning:
|     ‘int _import_array()’ defined but not used
| 
| M	src/interfaces/python_modular/sg_print_functions.cpp
| M	src/interfaces/python_modular/swig_typemaps.i
|    
*   commit 4a4d217742b88b89ad220eff74ccb51898fe2f8b
|\  Merge: f288268 904d75c
| | Author: Viktor Gal <vigsterkr@gmail.com>
| | Date:   Fri Mar 8 04:52:41 2013 -0800
| | 
| |     Merge pull request #910 from vigsterkr/master
| |     
| |     Add some comments for CCSOSVM
| |   
| * commit 904d75ccc675ad51e1152f9328f62e3780350633
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Fri Mar 8 13:51:53 2013 +0100
|   
|       Add some comments for CCSOSVM
|   
|   M	src/shogun/structure/CCSOSVM.h
|  
* commit f28826896f6de0738ce845b982f9162204fc39e5
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 16:10:27 2013 +0400
| 
|     Commented out initParallel of eigen in tapkee
| 
| M	src/shogun/lib/tapkee/tapkee.hpp
|  
* commit 657462ce433c7edb0a5e1f4f0039774c99e4a4e6
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 15:55:16 2013 +0400
| 
|     Fixed includes in tapkee and fixed wrong segment of eigenvalues in
|     generalized eigenembedding
| 
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/utils/fibonacci_heap.hpp
| M	src/shogun/lib/tapkee/utils/time.hpp
|  
* commit 2b119cc4db723c7d8bad2eaa1062e8832aead138
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 15:42:03 2013 +0400
| 
|     Added -Wno-unknown-pragmas key to ignore openmp pragmas
| 
| M	src/configure
|  
* commit ce8fd330e5ce20a6188fdfb61faa84cefffa8e9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 12:33:52 2013 +0100
| 
|     fix loglevel_above check
| 
| M	src/shogun/io/SGIO.h
|  
* commit f9c0960a2447773e427d210092eafc259b7786b3
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 15:29:47 2013 +0400
| 
|     A few fixes for Tapkee:
|     
|     - Correct implementation for NPE, LLTSA and LPP
|     - Parallel implementation of isomap
|     - Parallel implementation of lle
|     - Proper consts
|     - Proper timing
| 
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/isomap.hpp
| M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/utils/fibonacci_heap.hpp
| M	src/shogun/lib/tapkee/utils/time.hpp
|  
* commit 9cd8b070ae6ca0a45ba5ae881cf841fb23e815bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 12:04:01 2013 +0100
| 
|     fix logging of functions
| 
| M	src/shogun/io/SGIO.h
|  
* commit 688da262f28ef35ef7c6ea7a50893b4d88f6f901
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 11:58:02 2013 +0100
| 
|     a few more doxygen fixes
| 
| M	src/shogun/regression/gp/ExactInferenceMethod.h
| M	src/shogun/regression/gp/FITCInferenceMethod.h
| M	src/shogun/regression/gp/LaplacianInferenceMethod.h
|  
* commit efed63958cb02e05eff329c4785bd7b08d2c2cd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 10:29:44 2013 +0100
| 
|     remove unstable warning about oligo/SLIK kernels
| 
| M	src/shogun/kernel/string/OligoStringKernel.cpp
| M	src/shogun/kernel/string/SimpleLocalityImprovedStringKernel.cpp
|  
* commit 9c1840be49d03d5751719dd43f9e630993f4cdd6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 10:27:16 2013 +0100
| 
|     fix ar warning
| 
| M	tests/unit/Makefile
|  
* commit 07843b77b65745eb6045b798e3c3024fa71aae0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 8 10:24:03 2013 +0100
| 
|     add missing doxygen documentation
| 
| M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| M	src/shogun/classifier/mkl/MKLMulticlass.h
| M	src/shogun/lib/SGSparseVector.h
| M	src/shogun/lib/SGVector.h
| M	src/shogun/regression/gp/ExactInferenceMethod.h
| M	src/shogun/regression/gp/FITCInferenceMethod.h
| M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| M	src/shogun/structure/CCSOSVM.h
| M	src/shogun/structure/libbmrm.h
|  
* commit 45244267d1900180dbd5bad75b78a3d3df6cd8d0
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Mar 8 02:56:48 2013 +0400
| 
|     Update for tapkee
|     
|     - Fixed dense eigenembedding method
|     - Better parameters macro structure
|     - t-SNE preparation
|     - Debug logging level
| 
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/utils/logging.hpp
| A	src/shogun/lib/tapkee/utils/parameters.hpp
|  
* commit b837e0e589b2ecd67385532d7a9b0bcdae3cf327
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 7 20:55:23 2013 +0100
| 
|     fix integration test directory
| 
| M	tests/integration/python_modular/generator.py
| M	tests/integration/python_modular/tester.py
|    
*   commit 6bc71bb61422fa361079a55986d047a7789762c7
|\  Merge: 91e9f46 a499fcd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 09:06:26 2013 -0800
| | 
| |     Merge pull request #909 from karlnapf/master
| |     
| |     more warnings removed
| |   
| * commit a499fcd75ccbb3b0939760a5800bc1524b28d1b8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 17:03:49 2013 +0000
| | 
| |     removed warnings by adding documentation
| | 
| | M	src/shogun/statistics/LinearTimeMMD.h
| |     
* |   commit 91e9f466a7606cdd8bce84fa12bfecb214bbe948
|\ \  Merge: adb36ad 77e75db
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Mar 5 08:34:16 2013 -0800
| |   
| |       Merge pull request #907 from karlnapf/master
| |       
| |       removed some warnings via adding documentation
| |   
| * commit 77e75db4e4e3165b60103ead5780770cde745451
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 16:31:43 2013 +0000
| | 
| |     added example to reproduce the mkl model selection bug with SVMLight
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
| * commit 4b774b13bd36a440806dab7c06d50048ef0883f4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 16:30:46 2013 +0000
| | 
| |     added example to reproduce the mkl model selection bug with SVMLight
| | 
| | A	examples/undocumented/libshogun/classifier_mkl_svmlight_modelselection_bug.cpp
| |   
| * commit 3a81dd2791f76322174dd6438f8e588db8028d07
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 16:29:42 2013 +0000
| | 
| |     fixed a typo
| | 
| | M	src/shogun/io/streaming/InputParser.h
| |   
| * commit 1b0e0ed84f8453b4791d053313f7c34d7ed80520
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 15:47:31 2013 +0000
| | 
| |     added a note on Viktors cool new unit tests
| | 
| | M	src/NEWS
| |   
| * commit bc4c0711455abc12531eed79f468d2cb9d2a3873
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 15:47:11 2013 +0000
| | 
| |     code formating
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 605fa179c9afa6d1963f8d1c4d2c42292203eda5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Mar 5 15:47:01 2013 +0000
| | 
| |     -removed the data generator example and moved it to the unit-tests
| |     -renamed the unit test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/streaming_generators.cpp
| | A	tests/unit/features/DataGenerators_unittest.cc
| | D	tests/unit/features/GaussianBlobsDataGenerator_unittest.cc
| |   
| * commit 9a867faa9ec6f29fc207362a34b4eab607dfed74
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Mar 5 15:23:44 2013 +0000
|   
|       removed some warnings via adding documentation
|   
|   M	src/shogun/features/streaming/StreamingDenseFeatures.h
|   M	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.h
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
|   M	src/shogun/statistics/QuadraticTimeMMD.h
|  
* commit adb36ad022b558983f530802cd0832392f783c7e
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Tue Mar 5 00:59:58 2013 +0400
| 
|     Updates for tapkee
|     
|     - MSVS compatibility
|     - Better checkers
| 
| M	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/random_projection.hpp
| M	src/shogun/lib/tapkee/routines/spe.hpp
| M	src/shogun/lib/tapkee/tapkee_exceptions.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
|  
* commit 55855d479e6fef46d5f5b06c51612877b39058f5
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Mar 4 23:36:21 2013 +0400
| 
|     Added missed number of vectors setting for FA
| 
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
|    
*   commit 0dcf0866aeb8bac9474d9a15277fc92735c65fab
|\  Merge: 0dc8b38 17f5597
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 09:03:11 2013 -0800
| | 
| |     Merge pull request #905 from karlnapf/master
| |     
| |     fixed hsic graphical example
| |   
| * commit 17f5597447cbf6d04296045a4b3b312b646bc9a9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 17:02:28 2013 +0000
| | 
| |     made hsic graphical example work again
| | 
| | M	examples/undocumented/python_modular/graphical/statistics_hsic.py
| |     
* |   commit 0dc8b38f8fe0fa429dae0377885c11a26119935a
|\ \  Merge: 24ea0be ec2c6ef
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Mar 4 08:58:11 2013 -0800
| |   
| |       Merge pull request #904 from karlnapf/master
| |       
| |       made graphical examples for MMD work again
| |   
| * commit ec2c6efb07210fb978e384467b4cbad18d3c5883
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:57:17 2013 +0000
| | 
| |     made example work again
| | 
| | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| |   
| * commit 7e8d80c82ed31d265f8435273f3061a8a0100f1e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:57:10 2013 +0000
| | 
| |     minor fix
| | 
| | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| |   
| * commit 3dc5ac0db43f0400ecb22f7c50664a6f407c8abf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:51:10 2013 +0000
| | 
| |     made example work again
| | 
| | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| |   
| * commit a86a0f37c6cb781be194fd1bfab76e96fe76580b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:49:33 2013 +0000
| | 
| |     fixed intendation
| | 
| | M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
| |     
* |   commit 24ea0beaead39df3c6b6a68a78b77e6236f117ca
|\ \  Merge: c9ebee6 cb17caa
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Mar 4 08:28:45 2013 -0800
| |   
| |       Merge pull request #903 from karlnapf/master
| |       
| |       make test work again, removed warnings
| |   
| * commit cb17caabf2eb22782decb63ee030c6c883349b11
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:13:53 2013 +0000
| | 
| |     made test compile again
| | 
| | M	tests/unit/statistics/MMDKernelSelectionCombMaxL2_unittest.cc
| |   
| * commit ba3be927e2fd70f9634dc9d6a06467a9dcf4413d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:13:44 2013 +0000
| | 
| |     removed unnecessary remove subset command
| | 
| | M	tests/unit/kernel/CustomKernel_unittest.cc
| |   
| * commit 4b3a255f3cf562eb6883fb4817e244120b8fba1a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:13:31 2013 +0000
| | 
| |     removed warning
| | 
| | M	src/shogun/io/streaming/StreamingFileFromDenseFeatures.h
| |   
| * commit 8d02af999d4cb92403cf9ba777974544feedb6b2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:13:18 2013 +0000
| | 
| |     removed doxygen warning
| | 
| | M	src/shogun/statistics/MMDKernelSelection.h
| |   
| * commit de8de4d6ba7cf92ae06959e1ba359f964371abd1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Mar 4 16:13:09 2013 +0000
| | 
| |     registered some parameters
| | 
| | M	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.cpp
| |     
* |   commit c9ebee62f05c6ea6af63df1327c62c424612c3ef
|\ \  Merge: 2717831 ee46d69
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Mar 4 05:28:30 2013 -0800
| |   
| |       Merge pull request #902 from karlnapf/master
| |       
| |       Massive documentation update
| |   
| * commit ee46d692854f976a0f7cd4e7b61ca26f1c0e809e
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Mon Mar 4 13:27:10 2013 +0000
|   
|       updated documentation for kernel MMD two-sample testing
|   
|   M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
|   M	src/shogun/statistics/LinearTimeMMD.cpp
|   M	src/shogun/statistics/LinearTimeMMD.h
|   M	src/shogun/statistics/MMDKernelSelection.cpp
|   M	src/shogun/statistics/MMDKernelSelection.h
|   M	src/shogun/statistics/MMDKernelSelectionComb.cpp
|   M	src/shogun/statistics/MMDKernelSelectionComb.h
|   M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.cpp
|   M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.h
|   M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
|   M	src/shogun/statistics/MMDKernelSelectionCombOpt.h
|   M	src/shogun/statistics/MMDKernelSelectionMax.h
|   M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
|   M	src/shogun/statistics/MMDKernelSelectionMedian.h
|   M	src/shogun/statistics/MMDKernelSelectionOpt.cpp
|   M	src/shogun/statistics/MMDKernelSelectionOpt.h
|   M	src/shogun/statistics/QuadraticTimeMMD.cpp
|   M	src/shogun/statistics/QuadraticTimeMMD.h
|  
* commit 2717831d542a4cdda4b68ced2efff9d018ee85cf
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Mar 4 10:48:50 2013 +0400
| 
|     Updated tapkee library
|     
|     - Better parameters handling: proper invariants to avoid bugs
|     - Better exceptions usage
|     - Better naming of types
| 
| M	src/shogun/lib/tapkee/callbacks/eigen_callbacks.hpp
| M	src/shogun/lib/tapkee/callbacks/pimpl_callbacks.hpp
| M	src/shogun/lib/tapkee/callbacks/traits.hpp
| M	src/shogun/lib/tapkee/neighbors/connected.hpp
| M	src/shogun/lib/tapkee/neighbors/covertree.hpp
| M	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| M	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| M	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| M	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/fa.hpp
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| M	src/shogun/lib/tapkee/routines/isomap.hpp
| M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| M	src/shogun/lib/tapkee/routines/methods_traits.hpp
| M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/routines/random_projection.hpp
| M	src/shogun/lib/tapkee/routines/spe.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| A	src/shogun/lib/tapkee/tapkee_exceptions.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/utils/fibonacci_heap.hpp
| M	src/shogun/lib/tapkee/utils/logging.hpp
|  
* commit 18399b7f97b7b63793180d3e71d60ae3822c9f98
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Mar 3 00:47:08 2013 +0400
| 
|     Handled case of exceeding number of landmarks in landmark mds
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
|  
* commit f7d5441cf342ddfbb0eb9dd5bf05b93ccb6d8fa7
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Mar 2 23:18:57 2013 +0400
| 
|     Fixed Factor Analysis integration
|     
|     - Fixed bug with unset features
|     - Added Factor Analysis to modular interfaces
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_factoranalysis.cpp
| A	examples/undocumented/python_modular/converter_factoranalysis_modular.py
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| M	src/shogun/converter/FactorAnalysis.cpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
|    
*   commit 53b1db8571958ab7581ebce7c5dd1dacbae77880
|\  Merge: 7517dcb b452fdd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 12:11:21 2013 -0800
| | 
| |     Merge pull request #900 from karlnapf/master
| |     
| |     Fixed a serious CustomKernel subset related bug
| |     
| *   commit b452fdd7a861f95d8748b7a85cfbacf285cdfae5
| |\  Merge: 7517dcb fd72cf3
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Mar 1 20:08:42 2013 +0000
| |   
| |       Merge branch 'mmd_kernel_selection'
| |   
| * commit fd72cf329eaf92ee229e93a4108d0064b7f0c32d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 20:08:32 2013 +0000
| | 
| |     added some comments on the MMD examples and the custom kernel bugfix
| | 
| | M	src/NEWS
| |   
| * commit 5afd83703c0fcf1c172dcb77df108afb3ee60bed
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 20:05:52 2013 +0000
| | 
| |     added example/test for a SVM on string data with a string kernel and a precomputed kernel matrix which are asserted to return the same predictions
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/classifier_svmlight_string_features_precomputed_kernel.cpp
| |   
| * commit 14ba3a8a3757778f2e58bd3ec78d46efbacb5a0f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 19:29:13 2013 +0000
| | 
| |     replaced asserts by expect equal
| | 
| | M	tests/unit/kernel/CustomKernel_unittest.cc
| |   
| * commit 12988b3a22930edbffb4325ca996a5ce583741dd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 19:25:31 2013 +0000
| | 
| |     new unit test for subset copying behaviour (fixed bug and this is a test for it)
| | 
| | M	tests/unit/kernel/CustomKernel_unittest.cc
| |   
| * commit b9dd284d6f3c12d88b4f6ccca85b2b3d66e8e3fc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 19:25:02 2013 +0000
| | 
| |     -removed print_kernel_matrix
| |     -added some error messages
| |     -FIXED A BUG WHICH CAUSED SUBSET INDEX CONFUSION (nasty one)
| | 
| | M	src/shogun/kernel/CustomKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| |   
| * commit 89b801481a103e155f4c3b4bbe0925298f82b0db
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 16:39:57 2013 +0000
| | 
| |     fixed a memory leak by using SGVector instead of array
| | 
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| |   
| * commit ddfdd866585fab5f12e3dbf65ef5e78507f4f6cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 14:53:41 2013 +0000
| | 
| |     added a nicer error message
| | 
| | M	src/shogun/labels/Labels.cpp
| |   
| * commit 72a06ee35eb45abe31771c19656aa22318eaf766
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 14:53:27 2013 +0000
| | 
| |     moved copy subset example of string features into a unit test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | A	tests/unit/features/StringFeatures_unittest.cc
| |     
* |   commit 7517dcb3b2f645ee8fe61249fc892932a1153a96
|\ \  Merge: 606c7e7 ef8c5f3
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Mar 1 03:07:22 2013 -0800
| |   
| |       Merge pull request #899 from karlnapf/master
| |       
| |       minor memory error in example
| |   
| * commit ef8c5f3ba993d8cedc9de9125a310a8dc1f24ef9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 11:06:31 2013 +0000
| | 
| |     fix a memory error
| | 
| | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| |     
* |   commit 606c7e7b925726d8fdcce703f496c237e39c8bfa
|\ \  Merge: 5488858 1dab3bd
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Mar 1 03:00:29 2013 -0800
| |   
| |       Merge pull request #898 from karlnapf/master
| |       
| |       more illustrative example for quadratic time MMD
| |   
| * commit 1dab3bd9f79baf11128fac9b1d46ef8d8d3664f7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Mar 1 10:58:00 2013 +0000
| | 
| |     more illustrative example that is similar to the libshogun one
| | 
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
| * commit c06571cc12f4a49377eff72b571374dae2a00614
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Mar 1 10:57:43 2013 +0000
|   
|       illustrate use of precomputed kernel and some minor changes
|   
|   M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
|    
*   commit 548885890a159076b0113b5e5d0c8466c9fa28bc
|\  Merge: da1f023 0239dd1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 28 11:33:32 2013 -0800
| | 
| |     Merge pull request #897 from karlnapf/master
| |     
| |     More unit tests and bugfixes for MMD kernel selection
| |   
| * commit 0239dd1b18572c76f5ade70ae84d1f213c1970ff
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 28 19:31:55 2013 +0000
| | 
| |     added a comment on the previous bug that explains why one has to add/remove the indices every time
| | 
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| |   
| * commit b53e848c8dba8057435284b10c78afe9cfe87457
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 28 19:26:57 2013 +0000
| | 
| |     added a unit test for the custom kernel in order to check subset settings
| | 
| | A	tests/unit/kernel/CustomKernel_unittest.cc
| |   
| * commit 22d91cec0b6b7c125e00c3254f89b23445951797
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 28 19:26:36 2013 +0000
| | 
| |     added a unit test that checks whether bootstrapping statistics are the same for a custom kernel and a normal one
| | 
| | M	tests/unit/statistics/QuadraticTimeMMD_unittest.cc
| |   
| * commit 079a1e33a5c54850c7ad1d5ab06f0bb40d70faf5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 28 19:26:08 2013 +0000
| | 
| |     fixed a nasty bug that would avoid computing type I errors. Very subtle. Subsets were not updated properly
| | 
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| |   
| * commit 0261cd1253dcc3dd486471633818ea8123e86888
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Feb 28 19:25:26 2013 +0000
|   
|       added comment about parallelisation
|   
|   M	src/shogun/statistics/QuadraticTimeMMD.cpp
|  
* commit da1f0234bedac7cb5f5c9b71257b1498fd09c058
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Feb 28 11:50:28 2013 +0400
| 
|     Ported a few more fixes and additions from tapkee
|     
|     - Added random projection method
|     - Added missed mean subtraction in projection and out-of-sample projection
|     - Fixed implementation of isomap and landmark isomap
| 
| M	src/shogun/lib/tapkee/routines/isomap.hpp
| M	src/shogun/lib/tapkee/routines/pca.hpp
| A	src/shogun/lib/tapkee/routines/random_projection.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| M	src/shogun/lib/tapkee/tapkee_projection.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
|    
*   commit 98f6b37fd8f04b0205728898a3ea8f7c843814cc
|\  Merge: 9a78f24 b741d4b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Feb 27 23:22:43 2013 -0800
| | 
| |     Merge pull request #894 from iglesias/fa
| |     
| |     + port factor analysis from tapkee
| |   
| * commit b741d4bcfeba73808dd53c603f6f7224fd2590ce
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu Feb 28 02:49:24 2013 +0100
| | 
| |     + factor analysis class in converter and fa/spe refactoring
| |     fa and spe now share interface for the parameter max. iterations
| | 
| | A	src/shogun/converter/FactorAnalysis.cpp
| | A	src/shogun/converter/FactorAnalysis.h
| | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | M	src/shogun/converter/StochasticProximityEmbedding.h
| | M	src/shogun/lib/tapkee/routines/fa.hpp
| | M	src/shogun/lib/tapkee/routines/spe.hpp
| | M	src/shogun/lib/tapkee/tapkee_defines.hpp
| | M	src/shogun/lib/tapkee/tapkee_methods.hpp
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| | M	src/shogun/lib/tapkee/tapkee_shogun.hpp
| |   
| * commit 06e7e4082016e31a8d75ac7a437459845f065567
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Tue Feb 26 16:37:42 2013 +0100
|   
|       + port factor analysis from tapkee
|   
|   A	src/shogun/lib/tapkee/routines/fa.hpp
|   M	src/shogun/lib/tapkee/tapkee.hpp
|   M	src/shogun/lib/tapkee/tapkee_defines.hpp
|   M	src/shogun/lib/tapkee/tapkee_methods.hpp
|   M	src/shogun/lib/tapkee/tapkee_shogun.cpp
|   M	src/shogun/lib/tapkee/tapkee_shogun.hpp
|    
*   commit 9a78f243814d17c0011e4f91aa7d3e09ef078eb8
|\  Merge: 060ba7d d2c75d5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Feb 26 10:36:36 2013 -0800
| | 
| |     Merge pull request #896 from karlnapf/master
| |     
| |     minor changes to example
| |   
| * commit d2c75d518a7388c07805413e5e95583be13981ce
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Feb 26 18:35:19 2013 +0000
| | 
| |     make use of precomputed kernel when estimating type I and II errors
| | 
| | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| |     
* |   commit 060ba7d54ef73b0ebc58f42b144c4a749b59647d
|\ \  Merge: 560bcf4 d1c5ebf
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Feb 26 10:31:07 2013 -0800
| |   
| |       Merge pull request #895 from karlnapf/master
| |       
| |       new unit tests and examples for quadratic time MMD
| |   
| * commit d1c5ebfebdecf6b9429b44ab3339906d41a5010e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Feb 26 18:29:33 2013 +0000
| | 
| |     added an illustrativ example for the quadratic time MMD
| | 
| | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| |   
| * commit 1356618706af45534d368def6229923bc33e5a6a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Feb 26 18:29:20 2013 +0000
| | 
| |     added some first unit tests for the quadratic time mmd
| | 
| | A	tests/unit/statistics/QuadraticTimeMMD_unittest.cc
| |   
| * commit 6043e0634a33b36c22ac13253db8f7cec9be7643
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Feb 26 18:29:03 2013 +0000
| | 
| |     some renaming and cleaned up includes
| | 
| | M	tests/unit/statistics/LinearTimeMMD_unittest.cc
| |   
| * commit 772d905d58c59fb76116f6c8825b15b04cbf0c19
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Feb 26 18:28:38 2013 +0000
|   
|       corrected typos in error messages
|   
|   M	src/shogun/statistics/QuadraticTimeMMD.cpp
|   M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
|  
* commit 560bcf47b52cbc538ad51b5b473278c67bd8c441
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Feb 25 22:57:00 2013 +0400
| 
|     Fixed typo
| 
| M	src/shogun/labels/DenseLabels.h
|  
* commit 2dd4049060a034920047a9ac467e0e54382fe263
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Feb 25 22:24:07 2013 +0400
| 
|     Same guards for c sharp
| 
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/BinaryLabels.h
| M	src/shogun/labels/DenseLabels.cpp
| M	src/shogun/labels/DenseLabels.h
|  
* commit 370a2eede7a01a1c38301fcd8fe3765f8baf6d0b
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Feb 25 21:44:15 2013 +0400
| 
|     Guarded conflicting method in dense labels
| 
| M	src/shogun/labels/DenseLabels.cpp
| M	src/shogun/labels/DenseLabels.h
|  
* commit ddd10aa2697a7a03211fb9f13646f4fee6f726cf
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Feb 25 20:55:53 2013 +0400
| 
|     Disabled recent constructors for java
| 
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/BinaryLabels.h
|    
*   commit c1e89cbed49000d1f312dc3d638ec7fed2b7428f
|\  Merge: d04bb50 fc7e2dc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Feb 25 08:31:34 2013 -0800
| | 
| |     Merge pull request #893 from iglesias/master
| |     
| |     Added one more convenience constructor for BinaryLabels
| |   
| * commit fc7e2dcc1b70a9e8ba97df728f473e6c1566b66e
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Mon Feb 25 15:28:04 2013 +0100
|   
|       + Added one more convenience constructor for BinaryLabels
|   
|   M	src/shogun/labels/BinaryLabels.cpp
|   M	src/shogun/labels/BinaryLabels.h
|   M	src/shogun/labels/DenseLabels.cpp
|   M	src/shogun/labels/DenseLabels.h
|  
* commit d04bb506f95b24424ffb6fc90ff31bceec2446e1
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Feb 25 15:03:14 2013 +0400
| 
|     Added convenience constructor for BinaryLabels
| 
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/BinaryLabels.h
|  
* commit 9554dab08344a46be07757dfb2ab0a9f8d8f50a3
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 20:26:41 2013 +0400
| 
|     Added some doc
| 
| M	src/shogun/structure/StructuredModel.h
| M	src/shogun/structure/libbmrm.h
|  
* commit 77b9c8e936ab5258165f22b44e8800e7b501a5fe
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 18:26:30 2013 +0400
| 
|     Updated old edrt folder in applications
| 
| D	applications/edrt/faces_embedding.py
| D	applications/edrt/octave_ltsa.m
| D	applications/edrt/swissroll_embedding.py
| D	applications/edrt/tutorial_examples/data.py
| D	applications/edrt/tutorial_examples/dm.py
| D	applications/edrt/tutorial_examples/hlle.py
| D	applications/edrt/tutorial_examples/isomap.py
| D	applications/edrt/tutorial_examples/klle.py
| D	applications/edrt/tutorial_examples/la.py
| D	applications/edrt/tutorial_examples/lle.py
| D	applications/edrt/tutorial_examples/lltsa.py
| D	applications/edrt/tutorial_examples/lpp.py
| D	applications/edrt/tutorial_examples/ltsa.py
| D	applications/edrt/tutorial_examples/mds.py
| D	applications/edrt/tutorial_examples/npe.py
| D	applications/edrt/words_embedding.py
| A	applications/tapkee/faces_embedding.py
| A	applications/tapkee/octave_ltsa.m
| A	applications/tapkee/samples/data.py
| A	applications/tapkee/samples/dm.py
| A	applications/tapkee/samples/hlle.py
| A	applications/tapkee/samples/isomap.py
| A	applications/tapkee/samples/klle.py
| A	applications/tapkee/samples/la.py
| A	applications/tapkee/samples/lle.py
| A	applications/tapkee/samples/lltsa.py
| A	applications/tapkee/samples/lpp.py
| A	applications/tapkee/samples/ltsa.py
| A	applications/tapkee/samples/mds.py
| A	applications/tapkee/samples/npe.py
| A	applications/tapkee/swissroll_embedding.py
| A	applications/tapkee/words_embedding.py
|  
* commit 5fcbf7b7f0df8492e99e21847dee86a876eb2d01
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 17:27:49 2013 +0400
| 
|     Old eigen support in tapkee and laplacian eigenmaps fix
| 
| M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
|  
* commit de82da565a84e6a9fac01b7ba1ee2924fde772ed
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 17:27:19 2013 +0400
| 
|     Fixed leaks in library serialization
| 
| M	examples/undocumented/libshogun/library_serialization.cpp
|  
* commit 064b53cd4ac01a8438efb7abb4268d87b359c1bf
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 16:00:04 2013 +0400
| 
|     Added missed free in library hdf5 example
| 
| M	examples/undocumented/libshogun/library_hdf5.cpp
|  
* commit 2ba8bb6338b172145ccacb501c57be2dbc70aa39
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 04:18:42 2013 +0400
| 
|     Added projecting functions capabilities in tapkee
| 
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/routines/spe.hpp
| M	src/shogun/lib/tapkee/tapkee.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
| A	src/shogun/lib/tapkee/tapkee_projection.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
|  
* commit 28c5f412fbae754d2a827264af96cf3170e3b263
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 04:02:13 2013 +0400
| 
|     Added missed method traits
| 
| A	src/shogun/lib/tapkee/routines/methods_traits.hpp
|  
* commit d91f97eafc85281a638bdd8a67f9fbd79588f018
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 03:07:31 2013 +0400
| 
|     Changed eigen old define to tapkee internal define
| 
| M	src/shogun/lib/tapkee/routines/locally_linear.hpp
|  
* commit 7421ea58a264f33fd8b271477f3548b19147e498
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 23 03:02:14 2013 +0400
| 
|     Updates for tapkee
| 
| D	src/shogun/lib/tapkee/callbacks/neighbor_callback.hpp
| D	src/shogun/lib/tapkee/callbacks/precomputed_callbacks.hpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
|    
*   commit 8b83c55fb1ee5aef3827ccef0a2a9beaa919dbf0
|\  Merge: 5ebfc14 eb8bf03
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 12:58:24 2013 -0800
| | 
| |     Merge pull request #892 from karlnapf/master
| |     
| |     new tests new example
| |   
| * commit eb8bf033374ecf088acfccee111a36f355231234
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 18:47:09 2013 +0000
| | 
| |     made a more illustrative example now that tests are in unit-tests
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 5a99140e0e0374159aa1a7bd1d53f8f0301d84bf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 18:30:57 2013 +0000
| | 
| |     added unit test for linear time MMD
| | 
| | A	tests/unit/statistics/LinearTimeMMD_unittest.cc
| |     
* |   commit 5ebfc14aad2e4f8a71dbc434d34a3e50212cbb05
|\ \  Merge: 2dc1656 18e8181
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Feb 22 10:18:21 2013 -0800
| |   
| |       Merge pull request #891 from karlnapf/master
| |       
| |       some example fixed and updates
| |   
| * commit 18e818104f502713347f6e1db75e519dc413f70b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 18:17:21 2013 +0000
| | 
| |     commented out all pylab stuff
| | 
| | M	examples/undocumented/python_modular/statistics_mmd_kernel_selection.py
| |   
| * commit 38226942fffa1769174c1f1dfaed06ace13b0338
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:54:37 2013 +0000
| | 
| |     reduced number of samples to be faster
| | 
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
| * commit b78b2848fadea1fa05794486b1cf68f950017cd3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:54:26 2013 +0000
| | 
| |     added computation of type I and II errors
| | 
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| |   
| * commit 41aef009835ee9136a63d643758b67e9fb6c2f91
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:40:49 2013 +0000
| | 
| |     fixed get_name string
| | 
| | M	src/shogun/statistics/MMDKernelSelectionMedian.h
| |   
| * commit a52880556c117d224d7b3d869299f964524486c1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:40:40 2013 +0000
| | 
| |     added other kernel selection methods for illustrational purposes
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| | M	examples/undocumented/python_modular/statistics_mmd_kernel_selection.py
| |   
| * commit b2ecc905f37e84bfeed14e266490175f4ffbe775
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:22:59 2013 +0000
| | 
| |     extended example with a combined kernel weight selection
| | 
| | M	examples/undocumented/python_modular/statistics_mmd_kernel_selection.py
| |     
* |   commit 2dc165692e5a3827f9e78bd34079d37dfe6dd879
|\ \  Merge: eb8bdcd 0634ac1
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Feb 22 09:15:00 2013 -0800
| |   
| |       Merge pull request #890 from karlnapf/master
| |       
| |       new example for kernel selection on combined kernels
| |   
| * commit 0634ac101e6c724293f896cdc50443bc23319898
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:09:02 2013 +0000
| | 
| |     added combined kernel selection example
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit c637489e4282ced0f3879c6961a1a18b6b59c3e2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:08:47 2013 +0000
| | 
| |     mentioned Gaussian blobs generator
| | 
| | M	src/NEWS
| |   
| * commit 76463c5e8621bf1adb258376b5dc4b4578f82606
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:08:36 2013 +0000
| | 
| |     some minor updates
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 051da8060260b566bef9b01b980510f0885267ec
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 17:08:22 2013 +0000
| | 
| |     -removed KernelToCombinedKernel and replaced by a (proper) obtain_from_generic
| |     -some better error messages
| |     -added possibility to init with single features which are then applied to all subkernels (needed by MMD stuff)
| | 
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.h
| |   
| * commit 253e9a6c41cb04a2367106cc839522e99ed7b9c5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 11:54:53 2013 +0000
| | 
| |     removed prints
| | 
| | M	tests/unit/statistics/MMDKernelSelectionMax_unittest.cc
| |   
| * commit ff9a77402fd742972d9810052d9eb996626fb91c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 22 11:54:40 2013 +0000
| | 
| |     moved SG_REF to a nicer place
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 97591469871d0de72857eb4233949db6cdee9afc
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Feb 22 11:54:26 2013 +0000
|   
|       re-added initialisation for current vector which prevents double free segfaults when streaming from fixed data in memory
|   
|   M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
|    
*   commit eb8bdcd03d6bb84648b146234d9042a5f1230335
|\  Merge: 956d418 7190a52
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 09:53:30 2013 -0800
| | 
| |     Merge pull request #889 from karlnapf/master
| |     
| |     some first proper examples for kernel selection
| |   
| * commit 7190a520a903034dfb8c76e55bd77d9d10f1f9c5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:52:06 2013 +0000
| | 
| |     a first proper mmd kernel selection example in python
| | 
| | A	examples/undocumented/python_modular/statistics_mmd_kernel_selection.py
| |   
| * commit e1f4e366dd3d3744a1e46118c8c5694e2d60cae5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:51:46 2013 +0000
| | 
| |     some small updates
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit c1299e7e10a2ed9366128c44b18df41a5f8c40b4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:31:54 2013 +0000
| | 
| |     made a proper kernel selection example since tests are now somewhere else
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit e371f852f87a8b07008efd093b9b5cbb5e660b69
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:31:38 2013 +0000
| | 
| |     fixed a memory leak
| | 
| | M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
| |   
| * commit 756abdd4216da4f999c302b8a5c43ab2ccf6ff6f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:31:22 2013 +0000
| | 
| |     fixed a bug that caused non-termination
| | 
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| |   
| * commit 1a15bacb90f82069c755aeb03aa454e138ef47cf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 17:31:09 2013 +0000
| | 
| |     made setter inline
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit ff41d12935ed9799d41a2a8b7af3d81a884bf2ef
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Feb 21 17:30:57 2013 +0000
|   
|       removed a print
|   
|   M	src/shogun/features/DenseFeatures.cpp
|    
*   commit 956d418e3598ce80bdfa26a738fe14284631bd27
|\  Merge: eef8299 e01ed51
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 07:32:52 2013 -0800
| | 
| |     Merge pull request #888 from karlnapf/master
| |     
| |     better handling of null distribution sampling for linear time mmd
| |   
| * commit e01ed51c007e8c3c34280899d960c1439ed30bd4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 15:27:10 2013 +0000
| | 
| |     moved simulate_h0 flag to linear time MMD since in the case where data is stored, permuting it is easy: data is stored in one single feature object
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit e35b27d38b31e0934fee7a126686f19ce2cc271c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 15:00:52 2013 +0000
| | 
| |     added simulate_h0 method to two-distribution based test statistics, which allows to sample the null hypothesis. This has to be handled in all methods that compute a statistic. Added handling for linear and quadratic time MMD. Changed the bootstrap_null method to use this flag
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit a68876f2ffc1e974e5864ee426ff2df7b3bacd6f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 14:50:32 2013 +0000
| | 
| |     corrected get_name
| | 
| | M	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.h
| |   
| * commit d3170f704326b3ea7f8f4722c4a3a01523a01fb0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 14:50:23 2013 +0000
| | 
| |     removed prints
| | 
| | M	src/shogun/features/DenseFeatures.cpp
| |     
* |   commit eef829995dbda9d4d06a17aa2eeb3575f631b36b
|\ \  Merge: 35a512f 07648d1
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Feb 21 05:18:40 2013 -0800
| |   
| |       Merge pull request #887 from karlnapf/master
| |       
| |       added a new create_merged_features method
| |   
| * commit 07648d1862443c9896dd3e2f7244c8d8726f2eb9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 13:16:15 2013 +0000
| | 
| |     removed create_merged_copy example and added a test for combined features and dense features instead
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/features_create_merged_copy.cpp
| | A	tests/unit/features/CombinedFeatures_unittest.cc
| | A	tests/unit/features/DenseFeatures_unittest.cc
| |   
| * commit 41988bbd60aaf747fe891748557ec2324dc3b96d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 21 13:09:35 2013 +0000
| | 
| |     changed create_merged_copy to work with multiple feature objects and added implementation for DenseFeatures
| | 
| | M	src/shogun/features/DenseFeatures.cpp
| | M	src/shogun/features/DenseFeatures.h
| | M	src/shogun/features/Features.h
| |   
* | commit 35a512f25737b36f835a2613127e23f39a9a2d74
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Feb 20 12:31:11 2013 +0400
| | 
| |     Mention of include fix in NEWS. Related to #855
| | 
| | M	src/NEWS
| |   
* | commit 299897031ea438bbe18044d162cf4e9be4186885
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Feb 20 09:25:52 2013 +0100
| | 
| |     include SGMatrixList.h instead of .cpp (Closes: #855)
| |     
| |     Thanks bianjiang for the fix!
| | 
| | M	src/shogun/lib/SGMatrix.cpp
| |   
* | commit 49060b0a4fdc0a8beacf821e09ed04fab9e13671
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Feb 19 21:40:15 2013 +0100
| | 
| |     refactor parameters to use SGVector as dims (for future ndarray support)
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/io/SerializableAsciiFile.cpp
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/mathematics/eigen3.h
| |   
* | commit 5ad201e5e6bdb0a24a61867a6b29796866419fe3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Feb 19 21:39:50 2013 +0100
| | 
| |     add unit test for sgvector's setters/getters
| | 
| | M	tests/unit/lib/SGVector_unittest.cc
| |   
* | commit cc46936a53fad63dafa6fd120a5e1eed2859a01a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Feb 18 22:27:26 2013 +0400
| | 
| |     Speeded up MDS unit test
| | 
| | M	tests/unit/converter/MultidimensionalScaling_unittest.cc
| |     
* |   commit 6c3cae343c2ad47c03756f60cb847bedab5cef59
|\ \  Merge: 269b3a3 893cb2c
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Feb 17 23:39:08 2013 -0800
| | | 
| | |     Merge pull request #883 from iglesias/dev
| | |     
| | |     minor fixes to compile VW examples
| | |    
| * | commit 893cb2c7af7e81b7fb69c406f076b8fba154c7be
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Feb 17 21:38:06 2013 +0100
| | | 
| | |     minor fixes to compile VW examples
| | | 
| | | M	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| | | M	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| | |    
* | | commit 269b3a35f4efa56d7e042e9c998b7999410bc0b7
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Feb 18 11:27:57 2013 +0400
| | | 
| | |     Fixed typo in MKL
| | | 
| | | M	src/shogun/classifier/mkl/MKL.cpp
| | |      
* | |   commit d23d3aa9eb6351121597ac4693883af0ea7542a4
|\ \ \  Merge: bdac6bc 6f9c315
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Feb 17 23:17:17 2013 -0800
| | | | 
| | | |     Merge pull request #884 from iglesias/fix-warning
| | | |     
| | | |     * minor warning fixes
| | | |     
| * | | commit 6f9c31569fc867ccf8e2873dea4e302e2c3e827d
|/ / /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |   Date:   Sun Feb 17 22:16:21 2013 +0100
| | |   
| | |       * minor warning fixes
| | |       
| | |       Mainly in statistics module doc
| | |   
| | |   M	src/shogun/classifier/mkl/MKL.cpp
| | |   M	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.h
| | |   M	src/shogun/statistics/MMDKernelSelectionComb.h
| | |   M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.h
| | |   M	src/shogun/statistics/MMDKernelSelectionCombOpt.h
| | |   M	src/shogun/statistics/MMDKernelSelectionMedian.h
| | |   M	src/shogun/statistics/MMDKernelSelectionOpt.h
| | |    
* | | commit bdac6bc7101775743c621f4833a48899ecb2269a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Feb 17 21:03:56 2013 +0100
| | | 
| | |     don't use ref'counted matrix in parameter example (fixing double free!)
| | | 
| | | M	examples/undocumented/libshogun/base_map_parameters.cpp
| | |    
* | | commit b80f57941bc8ab1003be313a08ba7465934f02fa
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Sun Feb 17 19:05:26 2013 +0400
| |   
| |       Fixed wrong spectrum mismatch rbf construction in static interfaces
| |   
| |   M	src/NEWS
| |   M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 43ab1b6c6c9d19df9736a4cf6166fb9f5bc3b47c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 18:21:40 2013 +0400
| | 
| |     Guarded mds test
| | 
| | M	tests/unit/converter/MultidimensionalScaling_unittest.cc
| |   
* | commit 1d9645360c17a17c737f2b9902bfde13443dd045
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 18:10:57 2013 +0400
| | 
| |     Added multiclass liblinear test
| | 
| | A	tests/unit/multiclass/MulticlassLibLinear_unittest.cc
| |   
* | commit fb4ef2b9447400236750bb63776bb91fc412cc47
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 18:08:31 2013 +0400
| | 
| |     Added a unittest for MDS
| | 
| | A	tests/unit/converter/MultidimensionalScaling_unittest.cc
| |   
* | commit 9013527466e6a4fb7f408ba5d5f4bea2d3353cfc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 14:41:21 2013 +0400
| | 
| |     Enabled GCOV when profile is enabled
| | 
| | M	src/configure
| |   
* | commit e667b9e60e4a1619d867a51e28f66290043d9d5f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 03:31:50 2013 +0400
| | 
| |     More safety for parameter dictionary routine. Related to #880
| | 
| | M	src/shogun/base/SGObject.cpp
| |     
* |   commit 0ab4a45d7e60a2bc16af3b8286b2c6af42bec37f
|\ \  Merge: 6cbe6de 6e4af9c
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sat Feb 16 14:15:27 2013 -0800
| |   
| |       Merge pull request #879 from karlnapf/master
| |       
| |       unit tests for kernel selection
| |     
| *   commit 6e4af9c75e5654671127062684be9e6988ce565c
| |\  Merge: 6cbe6de 4a6b977
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sat Feb 16 22:14:02 2013 +0000
| |   
| |       Merge branch 'mmd_kernel_selection'
| |   
| * commit 4a6b9772de47ea58e12500cb5f8c642998164714
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Feb 16 22:13:16 2013 +0000
| | 
| |     unit tests for kernel selection
| | 
| | A	tests/unit/statistics/MMDKernelSelectionCombMaxL2_unittest.cc
| | A	tests/unit/statistics/MMDKernelSelectionCombOpt_unittest.cc
| | A	tests/unit/statistics/MMDKernelSelectionMax_unittest.cc
| | A	tests/unit/statistics/MMDKernelSelectionMedian_unittest.cc
| | A	tests/unit/statistics/MMDKernelSelectionOpt_unittest.cc
| |   
| * commit afc74996818241677d2bd1f8153135b94890392e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Feb 16 22:12:48 2013 +0000
| | 
| |     renamed test
| | 
| | D	tests/unit/features/CGaussianBlobsDataGenerator_unittest.cc
| | A	tests/unit/features/GaussianBlobsDataGenerator_unittest.cc
| |   
* | commit 6cbe6de109f1fc2beca0906b036bb6231b5fd579
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 01:49:01 2013 +0400
| | 
| |     Fixed lost nullspace shift in LLTSA
| | 
| | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| |   
* | commit 538ee431c9d1c5a08526e4a95515187a69c6a3c7
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 01:33:33 2013 +0400
| | 
| |     Commented out unused projecting functions to avoid unhandled memory
| | 
| | M	src/shogun/lib/tapkee/tapkee_methods.hpp
| |   
* | commit 2b60dbe596d28aaabed9122799b1aede31c484c5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Feb 16 21:52:34 2013 +0100
| | 
| |     Fix serialization of Sparse features
| |     
| |     - remove inplace (de-)constructors for SGSparse
| |     - add malloc support for SGSparseVector<T>
| |     - enable unit test for sparse feature serialization
| | 
| | M	examples/undocumented/libshogun/features_dense_real_modular.cpp
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/features/SparseFeatures.cpp
| | M	src/shogun/lib/SGSparseMatrix.cpp
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	tests/unit/features/SparseFeatures_unittest.cc
| |   
* | commit 99a82365fa46dede16d93d0ef12be9027125b532
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Feb 16 21:09:17 2013 +0100
| | 
| |     add eclipse project file
| | 
| | A	src/shogun/.project
| |   
* | commit 9860c736661ff4aba365c0986911d9883b176cfb
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 00:30:13 2013 +0400
| | 
| |     Removed unnecessary and memory-wise wrong distance initialization in laplacian eigenmaps
| | 
| | M	src/shogun/converter/LaplacianEigenmaps.cpp
| |   
* | commit 4091d89436dcfda623a16ce7cfd59033db045fc5
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 00:23:22 2013 +0400
| | 
| |     Added gcda for clear target
| | 
| | M	src/Makefile.template
| |   
* | commit c4d485eea0740e9357812b55a166e18120d5c6c4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 00:04:54 2013 +0400
| | 
| |     Fixed totally wrong tapkee integration feature access callback
| | 
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| |   
* | commit 749d96694ba2f35b84f786bccb57614179415fec
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Feb 17 00:04:18 2013 +0400
| | 
| |     Ignore gcda file extension
| | 
| | M	.gitignore
| |     
* |   commit 17d6ba9eb5fea2d38673b03ef28c72f81ffe425f
|\ \  Merge: 83d3fbe 2e37cd5
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Feb 15 11:58:26 2013 -0800
| |   
| |       Merge pull request #878 from karlnapf/master
| |       
| |       kernel selection for linear time mmd for modular interfaces
| |   
| * commit 2e37cd5beea2fc7f827611e4155b8025fc11bba2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Feb 15 19:57:12 2013 +0000
| | 
| |     Made new kernel selection methods for linear time MMD available under modular interfaces.
| |     Includes some other minor changes
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Features_includes.i
| | M	src/interfaces/modular/Statistics.i
| | M	src/interfaces/modular/Statistics_includes.i
| | M	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.cpp
| | M	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.h
| | A	src/shogun/statistics/MMDKernelSelectionOpt.cpp
| | A	src/shogun/statistics/MMDKernelSelectionOpt.h
| | D	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
| | D	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| |     
* |   commit 83d3fbed74dc4f9fd77f1a968b5f4cef4280e548
|\ \  Merge: 59719ba 9f1daba
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Feb 15 10:12:51 2013 -0800
| |   
| |       Merge pull request #877 from karlnapf/master
| |       
| |       added epsilon and tube_epsilon for model selection
| |   
| * commit 9f1daba1d32cc786614f64f5fd7088bd2b88aa3b
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Feb 15 18:10:51 2013 +0000
|   
|       added epsilon and tube_epsilon for model selection
|   
|   M	src/shogun/classifier/svm/SVM.cpp
|  
* commit 59719ba652c35ac206feb39945e262b83f7663f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 14 20:23:58 2013 +0100
| 
|     require single thread usage & initialize rnd number generator
| 
| M	tests/unit/classifier/svm/SVMOcas_unittest.cc
|  
* commit ac7aa2a4d0da9576f5e90a821d1231acba7d0098
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 14 20:08:57 2013 +0100
| 
|     fix compile error / forgotten glpk include
| 
| M	src/shogun/classifier/mkl/MKL.h
|    
*   commit 59032523db4e58f95b32fe93449b999f7e7fcea3
|\  Merge: 2f80763 09c467a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 14 09:04:19 2013 -0800
| | 
| |     Merge pull request #876 from karlnapf/master
| |     
| |     my first unit test
| |   
| * commit 09c467a5694e89d9a3bcb0e9f3f0ff5742de3ffd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 14 16:53:40 2013 +0000
| | 
| |     examples work again so use them
| | 
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
| * commit e4b0d2b1e4130780ecc50a555ac2f14e2a0389ee
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Feb 14 16:49:19 2013 +0000
|   
|       my first unit-test to ensure that Gaussian blobs data is produced roughly the right way
|   
|   A	tests/unit/features/CGaussianBlobsDataGenerator_unittest.cc
|  
* commit 2f807630df1d2b18345701ba662d96e1108452fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 22:18:48 2013 +0100
| 
|     add valgrind target
| 
| M	tests/unit/Makefile
|  
* commit 8cad60cd802899b362aef78286d2f6da449586e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 22:18:31 2013 +0100
| 
|     add sparse features serialization test
| 
| A	tests/unit/features/SparseFeatures_unittest.cc
|  
* commit d41b3134895c3e95440fe9c8e446d6d8cddc69cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 21:45:41 2013 +0100
| 
|     add serialization test for combined kernel
| 
| M	tests/unit/kernel/CombinedKernel_unittest.cc
|  
* commit bba7f878e20f6440b221b564015637620d713c66
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 21:34:06 2013 +0100
| 
|     set #threads to one *before* training and epsilon to sth very low
| 
| M	tests/unit/multiclass/MulticlassOCAS_unittest.cc
|  
* commit 9580b2de01e236f9bbc411ee066f40f41179ee6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 21:30:34 2013 +0100
| 
|     add test for combined kernel weights getter/setter
| 
| A	tests/unit/kernel/CombinedKernel_unittest.cc
|  
* commit f509af518f34862e792b86b65b3831fd13203976
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 21:23:18 2013 +0100
| 
|     add objective test for ocas
| 
| M	tests/unit/classifier/svm/SVMOcas_unittest.cc
|  
* commit b80a07c63b7123d23c4b1f4682c000daf404182d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 21:11:46 2013 +0100
| 
|     fix %template warning and potential compile error
| 
| M	src/interfaces/modular/Features.i
| M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
|    
*   commit 8d72b2949edc7427ff33414b914239745d7e9a83
|\  Merge: 0a21ab6 e15edc3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 13 11:41:28 2013 -0800
| | 
| |     Merge pull request #875 from karlnapf/master
| |     
| |     quickfix
| |   
| * commit e15edc3eb2ac0c81b875801d22d9877eea75e396
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 13 19:40:51 2013 +0000
| | 
| |     added forgotten template arugment in base class
| | 
| | M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| |     
* |   commit 0a21ab68ecbae93c2f31dd3962b6512b9e12a3b6
|\ \  Merge: 18ea338 d9bb5b8
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Feb 13 11:33:13 2013 -0800
| |   
| |       Merge pull request #874 from karlnapf/master
| |       
| |       New class for data generation
| |   
| * commit d9bb5b825203d4e52c7e1399a3b3f2a56dca23ca
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 13 19:30:53 2013 +0000
| | 
| |     made CMeanShiftDataGenerator not be a template anymore since useless and annoying
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | M	examples/undocumented/libshogun/streaming_generators.cpp
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | M	src/interfaces/modular/Features.i
| | M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| | M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
| |   
| * commit 773664da6de95fa85580eccd5aa549cf9f94d923
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 13 18:50:59 2013 +0000
| | 
| |     added example for new gaussian blobs data generator
| | 
| | M	examples/undocumented/libshogun/streaming_generators.cpp
| |   
| * commit 822d40a6534b801ea2c83fede17d9c165dde846c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 13 18:50:15 2013 +0000
| | 
| |     added new streaming data generator class for creating Gaussian blobs as in NIPS paper for optimal kernel choice for linear time MMD
| | 
| | A	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.cpp
| | A	src/shogun/features/streaming/generators/GaussianBlobsDataGenerator.h
| |   
| * commit 7e6bc9c9fd797cd0120735760dc42393c06b63ab
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sat Feb 9 23:17:58 2013 +0000
|   
|       fixed typo
|   
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
|    
*   commit 18ea3388b7b64b08df95f7d7f34c7fad484c9851
|\  Merge: da53770 59e15f5
| | Author: Viktor Gal <vigsterkr@gmail.com>
| | Date:   Wed Feb 13 06:50:39 2013 -0800
| | 
| |     Merge pull request #872 from vigsterkr/master
| |     
| |     Fix unit tests for SGVector::max_abs and MOCASSVM
| |   
| * commit 59e15f5087e05618b4f29faa533b3d8002571ec0
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Wed Feb 13 15:48:56 2013 +0100
|   
|       Fix unit tests for SGVector::max_abs and MOCASSVM
|       there was a bug when calculating max_abs in an SGVector
|       and MulticlassOCAS has been set to use only 1 thread
|   
|   M	tests/unit/lib/SGVector_unittest.cc
|   M	tests/unit/multiclass/MulticlassOCAS_unittest.cc
|    
*   commit da53770c936c847376f96449e78f2545fc7269ef
|\  Merge: db0a595 c553667
| | Author: Viktor Gal <vigsterkr@gmail.com>
| | Date:   Wed Feb 13 02:41:53 2013 -0800
| | 
| |     Merge pull request #867 from iglesias/master
| |     
| |     minor fix: add POSTLINKFLAGS in linking gtest
| |     
| *   commit c5536673621c26ebbaa7cdb496eb733a66ce5a16
| |\  Merge: a954c4f 021237f
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Feb 13 11:39:04 2013 +0100
| | | 
| | |     Merge branch 'master' of github.com:iglesias/shogun
| | |     
| | |     Conflicts:
| | |     	tests/unit/Makefile
| | |    
| | * commit 021237f32332ba15b6b0baf337b4ae3e5293c0d4
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Feb 9 23:56:01 2013 +0100
| | | 
| | |     add -lpthread flag to build tests correctly
| | | 
| | | M	tests/unit/Makefile
| | |    
| * | commit a954c4f2912d5c736a9c521750e48bf9082f1707
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Wed Feb 13 11:36:07 2013 +0100
| |   
| |       minor fix: add POSTLINKFLAGS in linking gtest
| |   
| |   M	tests/unit/Makefile
| |     
* |   commit db0a595a2cc65032be3573b340c9d10548912c55
|\ \  Merge: c515f49 3f87a2e
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Feb 13 00:43:33 2013 -0800
| | | 
| | |     Merge pull request #862 from iglesias/tapkee
| | |     
| | |     [WIP] Small fixes in converters to avoid valgrind errors
| | |    
| * | commit 3f87a2e0183aa42396be7994f6bfd7233544223a
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Feb 13 01:19:22 2013 +0100
| | | 
| | |     * minor fix in NPE to avoid valgrind complains
| | | 
| | | M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| | |    
| * | commit ded1104c19f0445fbf33f40f2508145b5606291d
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Feb 13 01:13:26 2013 +0100
| | | 
| | |     + Gaussian kernel width initialization in DiffusionMaps
| | | 
| | | M	src/shogun/converter/DiffusionMaps.cpp
| | |    
| * | commit c4443b05e08274639d5053f4bc5dfdb357b7df71
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Tue Feb 12 13:07:11 2013 +0100
| |   
| |       small fix in KLLE to avoid valgrind errors
| |   
| |   M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| |   
* | commit c515f49661ed3bfde488fa9597c9a7b75484f4ba
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Feb 11 00:10:07 2013 +0400
| | 
| |     Dummy malsar routines doc
| | 
| | M	src/shogun/lib/malsar/malsar_clustered.h
| | M	src/shogun/lib/malsar/malsar_joint_feature_learning.h
| | M	src/shogun/lib/malsar/malsar_low_rank.h
| |   
* | commit c8b58e5cd9407902ffa13f895f202e2b0be8b628
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Feb 11 00:04:20 2013 +0400
| | 
| |     Preparations for GCOV code coverage tool usage
| |     
| |     Ignored .gcno file extension
| |     Updated Makefile to clean .gcno files
| | 
| | M	.gitignore
| | M	src/Makefile.template
| |   
* | commit a119187825cdfe97038e889b1893cebc1de46a2e
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sun Feb 10 20:16:49 2013 +0100
|   
|       use expect_double_eq for double comparison
|   
|   M	tests/unit/lib/SGVector_unittest.cc
|  
* commit 001790288e12ada4bd2d4956007b4f87834d84c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 23:12:14 2013 +0100
| 
|     fix argmax/max in sgvector
|     
|     for float/double: isamax computes the argmax of abs(vector)
|     not the max! introduce new max_abs / arg_max_abs functions for that and
|     add tests for these too.
| 
| M	src/Makefile
| M	src/configure
| M	src/shogun/lib/SGVector.cpp
| M	src/shogun/lib/SGVector.h
| M	tests/unit/lib/SGVector_unittest.cc
|  
* commit 55a234d58576e3bffaa12a98fee48cda77177e26
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Feb 9 00:22:00 2013 +0400
| 
|     Removed shameful not stable mark from Local Alignment string kernel
| 
| M	src/shogun/kernel/string/LocalAlignmentStringKernel.cpp
|  
* commit 77862dda510a8c39790cd36d7de46a14d035e84c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 20:25:04 2013 +0100
| 
|     hopefully fix gmock/gtest detection
| 
| M	src/configure
|  
* commit 159ddb02b278342f1b37097f4bd2cb3d12de061d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 19:38:55 2013 +0100
| 
|     fix miscelleaneous erros/warnings
|     
|     - fix example compiler error
|     - fix doxygen warnings
|     - fix compiler flag
| 
| M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| M	src/configure
| M	src/shogun/base/Parameter.h
| M	src/shogun/lib/DynamicObjectArray.h
|    
*   commit 24a7529c8af20750f31d316fd098b9c98b3518fb
|\  Merge: 9c17a1d 0c0581e
| | Author: Viktor Gal <vigsterkr@gmail.com>
| | Date:   Fri Feb 8 08:43:36 2013 -0800
| | 
| |     Merge pull request #860 from vigsterkr/utest
| |     
| |     Fix google mocking framework detection
| |   
| * commit 0c0581eedaeab0beb973241535788e350a083914
| | Author: vigsterkr <vigsterkr@gmail.com>
| | Date:   Fri Feb 8 17:40:04 2013 +0100
| | 
| |     Fix google mocking framework detection
| |     Google unit testing and mocking framework has to be compiled
| |     with the same compiler flags as the code you are testing.
| | 
| | M	src/configure
| | M	tests/unit/Makefile
| |   
* | commit 9c17a1d8f0fb20da361ba58046a4e32874850a54
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Feb 8 19:05:42 2013 +0400
| | 
| |     Removed covertree example
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/library_cover_tree.cpp
| |   
* | commit 7d0a59b5373bccd869b44bbdc370e62319349569
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Feb 8 18:54:16 2013 +0400
| | 
| |     Removed fibheap and arpack examples
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/library_fibonacci_heap.cpp
| | D	examples/undocumented/libshogun/mathematics_arpack.cpp
| |     
* |   commit 253b5bc7d3930dd70f9b0d434e68d8da47f7d495
|\ \  Merge: 680939f dfe64a8
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/|   Date:   Fri Feb 8 05:05:28 2013 -0800
| |   
| |       Merge pull request #859 from AlexBinder/master
| |       
| |       init random number generator in evaluation_cross_validation_multiclass_mkl.cpp
| |   
| * commit dfe64a849684b3801ce1d5999e954d4e1e07f0b6
|/  Author: AlexBinder <alexander.binder@tu-berlin.de>
|   Date:   Fri Feb 8 13:18:58 2013 +0100
|   
|       initialized random number generator for reproducible outcomes in the light of an assertion ASSERT(result->mean>0.9);
|   
|   M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass_mkl.cpp
|  
* commit 680939fd00c27f5fdc4890542ad3194784984e28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 12:15:26 2013 +0100
| 
|     fix (harmless) error messages on make install
|     
|     better avoid them to not confuse us users or devlopers :)
| 
| M	src/Makefile.template
|    
*   commit 66b147db40329985b8dd7792cc4287cf8345a574
|\  Merge: c370b5d f1df014
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Feb 7 10:53:45 2013 -0800
| | 
| |     Merge pull request #858 from karlnapf/master
| |     
| |     Finally finished all mmd kernel selection methods
| |   
| * commit f1df01409d8f2166964df2788edaca97bc48bf36
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Feb 7 18:52:13 2013 +0000
|   
|       -finally make median kernel selection work
|       -bugfixed (added a new constructor to SGMatrix)
|       -added a new test for median kernel selection
|   
|   M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
|   M	src/shogun/lib/SGMatrix.cpp
|   M	src/shogun/lib/SGMatrix.h
|   M	src/shogun/statistics/MMDKernelSelectionComb.cpp
|   M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
|   M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
|  
* commit c370b5de2757dcd216e93d1022357b768ab08811
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 7 10:44:03 2013 +0100
| 
|     mention perl interface and data in README
| 
| M	README
|  
* commit 18666b1527465efdd4292b93f0e21a9ccd5e26cc
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Feb 7 01:25:20 2013 +0400
| 
|     Removed unused arpack wrapper and removed unused covertree import
| 
| M	src/shogun/classifier/NearestCentroid.h
| M	src/shogun/converter/MultidimensionalScaling.cpp
| D	src/shogun/mathematics/arpack.cpp
| D	src/shogun/mathematics/arpack.h
|  
* commit 48e3489656524eaa7689af5dc34492922167dfab
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Feb 7 01:16:25 2013 +0400
| 
|     Removed duplicate of fibonacci heap
| 
| D	src/shogun/lib/FibonacciHeap.cpp
| D	src/shogun/lib/FibonacciHeap.h
|  
* commit ff6d33624986decf4e085ed02418bf7fd8fbf7b7
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Feb 7 00:45:27 2013 +0400
| 
|     Removed unused covertree
| 
| D	src/shogun/lib/CoverTree.h
|  
* commit b2e2b301eebfaed45cdcc7fa591f5b9599bfc4f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 21:23:52 2013 +0100
| 
|     fix some clang compile errors
| 
| M	src/shogun/multiclass/LaRank.cpp
| M	src/shogun/multiclass/LaRank.h
|  
* commit 37d473621e388d64e0abd8ae0064cd49283b64e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 21:23:12 2013 +0100
| 
|     remove cstring include to hopefully fix clang compile error
| 
| M	src/interfaces/python_modular/protocols_helper.i
|  
* commit 397f02747e5665e68a00be15858f60312953b3fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 21:15:10 2013 +0100
| 
|     really disable optimizations in travis
| 
| M	.travis.yml
|  
* commit 61197e6018fe278bfae1b103c8494903f850b80b
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Feb 6 22:34:46 2013 +0400
| 
|     Disabled optimizations in travis
| 
| M	.travis.yml
|  
* commit ad53e41509b3b2641ba25c5c4eb3d23c842ab4d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 19:22:54 2013 +0100
| 
|     enable more strict compiler settings
| 
| M	src/configure
|  
* commit 4791238c1617776a7add5339a6b00f5c6b076072
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 19:04:37 2013 +0100
| 
|     Fix a couple of clang compiler warnings.
| 
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/lib/IndexBlock.cpp
| M	src/shogun/lib/IndexBlock.h
| M	src/shogun/lib/SGStringList.h
| M	src/shogun/multiclass/ScatterSVM.cpp
|  
* commit 5c8e2b102d53ad85ccd94870ec9b3c0a2ea197d0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 14:05:29 2013 +0100
| 
|     remove legacy whitespace in all SG_*IO functions
|     
|     like SG_INFO( "foo") -> SG_INFO("foo")
| 
| M	src/shogun/base/Version.cpp
| M	src/shogun/classifier/LDA.cpp
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/PluginEstimate.h
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLMulticlassGradient.cpp
| M	src/shogun/classifier/svm/CPLEXSVM.cpp
| M	src/shogun/classifier/svm/GPBTSVM.cpp
| M	src/shogun/classifier/svm/LibSVM.cpp
| M	src/shogun/classifier/svm/MPDSVM.cpp
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/distance/CustomDistance.cpp
| M	src/shogun/distance/CustomDistance.h
| M	src/shogun/distance/DenseDistance.h
| M	src/shogun/distance/Distance.cpp
| M	src/shogun/distance/HammingWordDistance.cpp
| M	src/shogun/distance/SparseDistance.h
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/distributions/HMM.h
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/CombinedDotFeatures.cpp
| M	src/shogun/features/CombinedFeatures.cpp
| M	src/shogun/features/DenseFeatures.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/FKFeatures.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/PolyFeatures.cpp
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/TOPFeatures.cpp
| M	src/shogun/io/SimpleFile.h
| M	src/shogun/kernel/AUCKernel.cpp
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/CustomKernel.cpp
| M	src/shogun/kernel/CustomKernel.h
| M	src/shogun/kernel/DotKernel.h
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/ProductKernel.cpp
| M	src/shogun/kernel/SparseKernel.h
| M	src/shogun/kernel/string/CommUlongStringKernel.cpp
| M	src/shogun/kernel/string/CommWordStringKernel.cpp
| M	src/shogun/kernel/string/HistogramWordStringKernel.cpp
| M	src/shogun/kernel/string/LocalityImprovedStringKernel.cpp
| M	src/shogun/kernel/string/SalzbergWordStringKernel.cpp
| M	src/shogun/kernel/string/SalzbergWordStringKernel.h
| M	src/shogun/kernel/string/WeightedCommWordStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.h
| M	src/shogun/kernel/string/WeightedDegreeStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreeStringKernel.h
| M	src/shogun/lib/DynamicArray.h
| M	src/shogun/lib/Trie.cpp
| M	src/shogun/lib/Trie.h
| M	src/shogun/lib/external/gpdtsolve.cpp
| M	src/shogun/lib/external/ssl.cpp
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/mathematics/Cplex.cpp
| M	src/shogun/mathematics/Math.cpp
| M	src/shogun/multiclass/GMNPSVM.cpp
| M	src/shogun/multiclass/KNN.cpp
| M	src/shogun/multiclass/KNN.h
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
| M	src/shogun/multiclass/MulticlassSVM.cpp
| M	src/shogun/multiclass/ScatterSVM.cpp
| M	src/shogun/preprocessor/PruneVarSubMean.cpp
| M	src/shogun/preprocessor/SortUlongString.cpp
| M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/structure/DynProg.cpp
| M	src/shogun/structure/Plif.cpp
| M	src/shogun/structure/Plif.h
| M	src/shogun/structure/PlifMatrix.cpp
| M	src/shogun/structure/SegmentLoss.cpp
| M	src/shogun/ui/GUIDistance.cpp
| M	src/shogun/ui/GUIFeatures.cpp
| M	src/shogun/ui/GUIHMM.cpp
| M	src/shogun/ui/GUIKernel.cpp
| M	src/shogun/ui/GUIPluginEstimate.cpp
| M	src/shogun/ui/GUIPreprocessor.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 792f8955781fc5149a114e7349107b0d52ba2132
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 6 13:56:15 2013 +0100
| 
|     Improve speed of SG_*IO debug functions
|     
|     - SG_DEBUG & co are likely not enabled. Improve macros to test if
|     loglevel is above the to-be-shown level and only then call io code
|     - Note: This change requires that all SG_*IO functions no longer have a
|     trailing ";", e.g. SG_DEBUG("hi there...") is sufficient.
| 
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/python_static/PythonInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
| M	src/shogun/base/Parallel.cpp
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/base/ParameterMap.cpp
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/base/SGObject.h
| M	src/shogun/base/Version.cpp
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| M	src/shogun/classifier/LDA.cpp
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/LPBoost.cpp
| M	src/shogun/classifier/LPBoost.h
| M	src/shogun/classifier/LPM.cpp
| M	src/shogun/classifier/LPM.h
| M	src/shogun/classifier/NearestCentroid.cpp
| M	src/shogun/classifier/Perceptron.cpp
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/PluginEstimate.h
| M	src/shogun/classifier/SubGradientLPM.cpp
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLClassification.cpp
| M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| M	src/shogun/classifier/mkl/MKLMulticlassGLPK.cpp
| M	src/shogun/classifier/mkl/MKLMulticlassGradient.cpp
| M	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.cpp
| M	src/shogun/classifier/mkl/MKLOneClass.cpp
| M	src/shogun/classifier/svm/CPLEXSVM.cpp
| M	src/shogun/classifier/svm/GNPPLib.cpp
| M	src/shogun/classifier/svm/GNPPSVM.cpp
| M	src/shogun/classifier/svm/GPBTSVM.cpp
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibSVM.cpp
| M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| M	src/shogun/classifier/svm/MPDSVM.cpp
| M	src/shogun/classifier/svm/MPDSVM.h
| M	src/shogun/classifier/svm/NewtonSVM.cpp
| M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| M	src/shogun/classifier/svm/QPBSVMLib.cpp
| M	src/shogun/classifier/svm/SGDQN.cpp
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/classifier/svm/SVMOcas.cpp
| M	src/shogun/classifier/svm/SVMSGD.cpp
| M	src/shogun/classifier/svm/SubGradientSVM.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/classifier/vw/VowpalWabbit.cpp
| M	src/shogun/classifier/vw/VwParser.cpp
| M	src/shogun/classifier/vw/VwRegressor.cpp
| M	src/shogun/classifier/vw/cache/VwCacheReader.cpp
| M	src/shogun/classifier/vw/cache/VwCacheWriter.cpp
| M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| M	src/shogun/clustering/GMM.cpp
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/Hierarchical.h
| M	src/shogun/clustering/KMeans.cpp
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/EmbeddingConverter.cpp
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/StochasticProximityEmbedding.cpp
| M	src/shogun/distance/AttenuatedEuclideanDistance.cpp
| M	src/shogun/distance/BrayCurtisDistance.cpp
| M	src/shogun/distance/CanberraMetric.cpp
| M	src/shogun/distance/CanberraWordDistance.cpp
| M	src/shogun/distance/ChebyshewMetric.cpp
| M	src/shogun/distance/ChiSquareDistance.cpp
| M	src/shogun/distance/CosineDistance.cpp
| M	src/shogun/distance/CustomDistance.cpp
| M	src/shogun/distance/CustomDistance.h
| M	src/shogun/distance/DenseDistance.h
| M	src/shogun/distance/DirectorDistance.h
| M	src/shogun/distance/Distance.cpp
| M	src/shogun/distance/Distance.h
| M	src/shogun/distance/EuclideanDistance.cpp
| M	src/shogun/distance/GeodesicMetric.cpp
| M	src/shogun/distance/HammingWordDistance.cpp
| M	src/shogun/distance/JensenMetric.cpp
| M	src/shogun/distance/KernelDistance.cpp
| M	src/shogun/distance/MahalanobisDistance.cpp
| M	src/shogun/distance/ManhattanMetric.cpp
| M	src/shogun/distance/ManhattanWordDistance.cpp
| M	src/shogun/distance/MinkowskiMetric.cpp
| M	src/shogun/distance/RealDistance.h
| M	src/shogun/distance/SparseDistance.h
| M	src/shogun/distance/StringDistance.h
| M	src/shogun/distance/TanimotoDistance.cpp
| M	src/shogun/distributions/Distribution.cpp
| M	src/shogun/distributions/Gaussian.cpp
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/distributions/HMM.h
| M	src/shogun/distributions/Histogram.cpp
| M	src/shogun/distributions/LinearHMM.cpp
| M	src/shogun/distributions/LinearHMM.h
| M	src/shogun/distributions/PositionalPWM.cpp
| M	src/shogun/evaluation/ClusteringAccuracy.cpp
| M	src/shogun/evaluation/ClusteringEvaluation.cpp
| M	src/shogun/evaluation/ClusteringMutualInformation.cpp
| M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| M	src/shogun/evaluation/ContingencyTableEvaluation.h
| M	src/shogun/evaluation/CrossValidation.cpp
| M	src/shogun/evaluation/CrossValidation.h
| M	src/shogun/evaluation/CrossValidationMKLStorage.cpp
| M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| M	src/shogun/evaluation/CrossValidationMulticlassStorage.h
| M	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| M	src/shogun/evaluation/DirectorContingencyTableEvaluation.h
| M	src/shogun/evaluation/GradientResult.h
| M	src/shogun/evaluation/MeanAbsoluteError.cpp
| M	src/shogun/evaluation/MeanSquaredError.cpp
| M	src/shogun/evaluation/MeanSquaredLogError.cpp
| M	src/shogun/evaluation/MulticlassAccuracy.cpp
| M	src/shogun/evaluation/MulticlassOVREvaluation.cpp
| M	src/shogun/evaluation/MulticlassOVREvaluation.h
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| M	src/shogun/evaluation/StructuredAccuracy.cpp
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/BinnedDotFeatures.cpp
| M	src/shogun/features/CombinedDotFeatures.cpp
| M	src/shogun/features/CombinedFeatures.cpp
| M	src/shogun/features/DenseFeatures.cpp
| M	src/shogun/features/DenseSubsetFeatures.h
| M	src/shogun/features/DirectorDotFeatures.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/ExplicitSpecFeatures.cpp
| M	src/shogun/features/FKFeatures.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/features/HashedWDFeatures.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/LBPPyrDotFeatures.cpp
| M	src/shogun/features/LatentFeatures.cpp
| M	src/shogun/features/PolyFeatures.cpp
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/SNPFeatures.cpp
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparsePolyFeatures.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFileFeatures.cpp
| M	src/shogun/features/SubsetStack.h
| M	src/shogun/features/TOPFeatures.cpp
| M	src/shogun/features/WDFeatures.cpp
| M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| M	src/shogun/features/streaming/StreamingDotFeatures.cpp
| M	src/shogun/features/streaming/StreamingFeatures.cpp
| M	src/shogun/features/streaming/StreamingSparseFeatures.cpp
| M	src/shogun/features/streaming/StreamingStringFeatures.cpp
| M	src/shogun/features/streaming/StreamingVwFeatures.cpp
| M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/BinaryStream.h
| M	src/shogun/io/File.cpp
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
| M	src/shogun/io/IOBuffer.cpp
| M	src/shogun/io/MemoryMappedFile.h
| M	src/shogun/io/SGIO.cpp
| M	src/shogun/io/SGIO.h
| M	src/shogun/io/SerializableAsciiFile.cpp
| M	src/shogun/io/SerializableAsciiReader00.cpp
| M	src/shogun/io/SerializableFile.cpp
| M	src/shogun/io/SerializableHdf5File.cpp
| M	src/shogun/io/SerializableHdf5Reader00.cpp
| M	src/shogun/io/SerializableJsonFile.cpp
| M	src/shogun/io/SerializableXmlFile.cpp
| M	src/shogun/io/SerializableXmlReader00.cpp
| M	src/shogun/io/SimpleFile.h
| M	src/shogun/io/streaming/InputParser.h
| M	src/shogun/io/streaming/ParseBuffer.h
| M	src/shogun/io/streaming/StreamingAsciiFile.cpp
| M	src/shogun/io/streaming/StreamingFile.cpp
| M	src/shogun/io/streaming/StreamingFile.h
| M	src/shogun/io/streaming/StreamingFileFromDenseFeatures.h
| M	src/shogun/io/streaming/StreamingFileFromFeatures.h
| M	src/shogun/io/streaming/StreamingVwCacheFile.cpp
| M	src/shogun/io/streaming/StreamingVwFile.cpp
| M	src/shogun/kernel/ANOVAKernel.cpp
| M	src/shogun/kernel/AUCKernel.cpp
| M	src/shogun/kernel/BesselKernel.cpp
| M	src/shogun/kernel/CauchyKernel.cpp
| M	src/shogun/kernel/Chi2Kernel.cpp
| M	src/shogun/kernel/CircularKernel.cpp
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/CombinedKernel.h
| M	src/shogun/kernel/CustomKernel.cpp
| M	src/shogun/kernel/CustomKernel.h
| M	src/shogun/kernel/DirectorKernel.h
| M	src/shogun/kernel/DistanceKernel.cpp
| M	src/shogun/kernel/DotKernel.h
| M	src/shogun/kernel/ExponentialKernel.cpp
| M	src/shogun/kernel/GaussianARDKernel.cpp
| M	src/shogun/kernel/GaussianKernel.cpp
| M	src/shogun/kernel/GaussianShiftKernel.cpp
| M	src/shogun/kernel/GaussianShortRealKernel.cpp
| M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| M	src/shogun/kernel/JensenShannonKernel.cpp
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/LinearARDKernel.cpp
| M	src/shogun/kernel/LinearKernel.cpp
| M	src/shogun/kernel/LinearKernel.h
| M	src/shogun/kernel/LogKernel.cpp
| M	src/shogun/kernel/MultiquadricKernel.cpp
| M	src/shogun/kernel/PowerKernel.cpp
| M	src/shogun/kernel/ProductKernel.cpp
| M	src/shogun/kernel/ProductKernel.h
| M	src/shogun/kernel/PyramidChi2.cpp
| M	src/shogun/kernel/RationalQuadraticKernel.cpp
| M	src/shogun/kernel/SparseKernel.h
| M	src/shogun/kernel/SphericalKernel.cpp
| M	src/shogun/kernel/SplineKernel.cpp
| M	src/shogun/kernel/TStudentKernel.cpp
| M	src/shogun/kernel/TensorProductPairKernel.cpp
| M	src/shogun/kernel/WaveKernel.cpp
| M	src/shogun/kernel/WaveletKernel.cpp
| M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/shogun/kernel/normalizer/AvgDiagKernelNormalizer.h
| M	src/shogun/kernel/normalizer/DiceKernelNormalizer.h
| M	src/shogun/kernel/normalizer/RidgeKernelNormalizer.h
| M	src/shogun/kernel/normalizer/ScatterKernelNormalizer.h
| M	src/shogun/kernel/normalizer/SqrtDiagKernelNormalizer.h
| M	src/shogun/kernel/normalizer/TanimotoKernelNormalizer.h
| M	src/shogun/kernel/normalizer/VarianceKernelNormalizer.h
| M	src/shogun/kernel/normalizer/ZeroMeanCenterKernelNormalizer.h
| M	src/shogun/kernel/string/CommUlongStringKernel.cpp
| M	src/shogun/kernel/string/CommWordStringKernel.cpp
| M	src/shogun/kernel/string/DistantSegmentsKernel.cpp
| M	src/shogun/kernel/string/FixedDegreeStringKernel.cpp
| M	src/shogun/kernel/string/GaussianMatchStringKernel.cpp
| M	src/shogun/kernel/string/HistogramWordStringKernel.cpp
| M	src/shogun/kernel/string/LinearStringKernel.cpp
| M	src/shogun/kernel/string/LocalAlignmentStringKernel.cpp
| M	src/shogun/kernel/string/LocalityImprovedStringKernel.cpp
| M	src/shogun/kernel/string/MatchWordStringKernel.cpp
| M	src/shogun/kernel/string/OligoStringKernel.cpp
| M	src/shogun/kernel/string/PolyMatchStringKernel.cpp
| M	src/shogun/kernel/string/PolyMatchWordStringKernel.cpp
| M	src/shogun/kernel/string/RegulatoryModulesStringKernel.cpp
| M	src/shogun/kernel/string/SNPStringKernel.cpp
| M	src/shogun/kernel/string/SalzbergWordStringKernel.cpp
| M	src/shogun/kernel/string/SalzbergWordStringKernel.h
| M	src/shogun/kernel/string/SimpleLocalityImprovedStringKernel.cpp
| M	src/shogun/kernel/string/SparseSpatialSampleStringKernel.cpp
| M	src/shogun/kernel/string/SparseSpatialSampleStringKernel.h
| M	src/shogun/kernel/string/SpectrumMismatchRBFKernel.cpp
| M	src/shogun/kernel/string/SpectrumRBFKernel.cpp
| M	src/shogun/kernel/string/StringKernel.h
| M	src/shogun/kernel/string/WeightedCommWordStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.h
| M	src/shogun/kernel/string/WeightedDegreeStringKernel.cpp
| M	src/shogun/kernel/string/WeightedDegreeStringKernel.h
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/DenseLabels.cpp
| M	src/shogun/labels/Labels.cpp
| M	src/shogun/labels/LatentLabels.cpp
| M	src/shogun/labels/MulticlassLabels.cpp
| M	src/shogun/labels/MulticlassMultipleOutputLabels.cpp
| M	src/shogun/labels/RegressionLabels.cpp
| M	src/shogun/labels/StructuredLabels.cpp
| M	src/shogun/latent/DirectorLatentModel.cpp
| M	src/shogun/latent/LatentModel.cpp
| M	src/shogun/latent/LatentSVM.cpp
| M	src/shogun/lib/BitString.h
| M	src/shogun/lib/Cache.h
| M	src/shogun/lib/Compressor.cpp
| M	src/shogun/lib/DataType.cpp
| M	src/shogun/lib/DynInt.h
| M	src/shogun/lib/DynamicArray.h
| M	src/shogun/lib/FibonacciHeap.cpp
| M	src/shogun/lib/GCArray.h
| M	src/shogun/lib/IndexBlock.cpp
| M	src/shogun/lib/IndexBlockGroup.cpp
| M	src/shogun/lib/IndexBlockRelation.cpp
| M	src/shogun/lib/IndexBlockTree.cpp
| M	src/shogun/lib/JLCoverTree.h
| M	src/shogun/lib/JLCoverTreePoint.h
| M	src/shogun/lib/List.h
| M	src/shogun/lib/Map.h
| M	src/shogun/lib/SGMatrix.cpp
| M	src/shogun/lib/SGNDArray.cpp
| M	src/shogun/lib/SGNDArray.h
| M	src/shogun/lib/SGReferencedData.cpp
| M	src/shogun/lib/SGSparseMatrix.cpp
| M	src/shogun/lib/SGSparseVector.cpp
| M	src/shogun/lib/SGString.cpp
| M	src/shogun/lib/SGStringList.cpp
| M	src/shogun/lib/SGVector.cpp
| M	src/shogun/lib/Set.h
| M	src/shogun/lib/Signal.cpp
| M	src/shogun/lib/Time.cpp
| M	src/shogun/lib/Trie.cpp
| M	src/shogun/lib/Trie.h
| M	src/shogun/lib/external/gpdtsolve.cpp
| M	src/shogun/lib/external/gpm.cpp
| M	src/shogun/lib/external/libocas.cpp
| M	src/shogun/lib/external/pr_loqo.cpp
| M	src/shogun/lib/external/shogun_libsvm.cpp
| M	src/shogun/lib/external/ssl.cpp
| M	src/shogun/lib/malsar/malsar_clustered.cpp
| M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| M	src/shogun/lib/malsar/malsar_low_rank.cpp
| M	src/shogun/lib/slep/slep_mc_plain_lr.cpp
| M	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| M	src/shogun/lib/slep/slep_solver.cpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/loss/LogLossMargin.cpp
| M	src/shogun/loss/SmoothHingeLoss.cpp
| M	src/shogun/loss/SquaredHingeLoss.cpp
| M	src/shogun/machine/DirectorKernelMachine.h
| M	src/shogun/machine/DirectorLinearMachine.h
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMulticlassMachine.cpp
| M	src/shogun/machine/LinearLatentMachine.cpp
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMulticlassMachine.h
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/machine/OnlineLinearMachine.cpp
| M	src/shogun/machine/OnlineLinearMachine.h
| M	src/shogun/mathematics/Cplex.cpp
| M	src/shogun/mathematics/Math.cpp
| M	src/shogun/mathematics/Math.h
| M	src/shogun/mathematics/Mosek.cpp
| M	src/shogun/mathematics/SparseInverseCovariance.cpp
| M	src/shogun/mathematics/Statistics.cpp
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/lapack.cpp
| M	src/shogun/modelselection/GradientModelSelection.cpp
| M	src/shogun/modelselection/GridSearchModelSelection.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
| M	src/shogun/modelselection/ParameterCombination.cpp
| M	src/shogun/modelselection/RandomSearchModelSelection.cpp
| M	src/shogun/modelselection/RandomSearchModelSelection.h
| M	src/shogun/multiclass/ConjugateIndex.cpp
| M	src/shogun/multiclass/GMNPLib.cpp
| M	src/shogun/multiclass/GMNPSVM.cpp
| M	src/shogun/multiclass/GaussianNaiveBayes.cpp
| M	src/shogun/multiclass/KNN.cpp
| M	src/shogun/multiclass/KNN.h
| M	src/shogun/multiclass/LaRank.cpp
| M	src/shogun/multiclass/LaRank.h
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
| M	src/shogun/multiclass/MulticlassLibLinear.h
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
| M	src/shogun/multiclass/MulticlassLogisticRegression.cpp
| M	src/shogun/multiclass/MulticlassLogisticRegression.h
| M	src/shogun/multiclass/MulticlassOCAS.cpp
| M	src/shogun/multiclass/MulticlassOCAS.h
| M	src/shogun/multiclass/MulticlassSVM.cpp
| M	src/shogun/multiclass/MulticlassStrategy.cpp
| M	src/shogun/multiclass/MulticlassStrategy.h
| M	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.cpp
| M	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.h
| M	src/shogun/multiclass/QDA.cpp
| M	src/shogun/multiclass/QDA.h
| M	src/shogun/multiclass/RejectionStrategy.h
| M	src/shogun/multiclass/ScatterSVM.cpp
| M	src/shogun/multiclass/ShareBoost.cpp
| M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCForestEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| M	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.cpp
| M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| M	src/shogun/multiclass/tree/ConditionalProbabilityTreeNodeData.h
| M	src/shogun/multiclass/tree/RelaxedTree.cpp
| M	src/shogun/multiclass/tree/RelaxedTree.h
| M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| M	src/shogun/multiclass/tree/TreeMachineNode.h
| M	src/shogun/multiclass/tree/VwConditionalProbabilityTree.cpp
| M	src/shogun/optimization/liblinear/shogun_liblinear.cpp
| M	src/shogun/optimization/liblinear/tron.cpp
| M	src/shogun/preprocessor/DecompressString.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/LogPlusOne.cpp
| M	src/shogun/preprocessor/NormOne.cpp
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/preprocessor/PNorm.cpp
| M	src/shogun/preprocessor/PruneVarSubMean.cpp
| M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| M	src/shogun/preprocessor/SortUlongString.cpp
| M	src/shogun/preprocessor/SortWordString.cpp
| M	src/shogun/preprocessor/SumOne.cpp
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/KernelRidgeRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.h
| M	src/shogun/regression/LinearRidgeRegression.cpp
| M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| M	src/shogun/regression/gp/GaussianLikelihood.cpp
| M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| M	src/shogun/regression/svr/LibLinearRegression.cpp
| M	src/shogun/regression/svr/LibLinearRegression.h
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/MKLRegression.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/statistics/HSIC.cpp
| M	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| M	src/shogun/statistics/KernelMeanMatching.cpp
| M	src/shogun/statistics/LinearTimeMMD.cpp
| M	src/shogun/statistics/MMDKernelSelection.cpp
| M	src/shogun/statistics/MMDKernelSelectionComb.cpp
| M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
| M	src/shogun/statistics/MMDKernelSelectionMedian.cpp
| M	src/shogun/statistics/QuadraticTimeMMD.cpp
| M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| M	src/shogun/structure/CCSOSVM.cpp
| M	src/shogun/structure/DirectorStructuredModel.cpp
| M	src/shogun/structure/DynProg.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/HMSVMLabels.h
| M	src/shogun/structure/HMSVMModel.cpp
| M	src/shogun/structure/IntronList.cpp
| M	src/shogun/structure/MulticlassModel.cpp
| M	src/shogun/structure/MulticlassSOLabels.cpp
| M	src/shogun/structure/MulticlassSOLabels.h
| M	src/shogun/structure/Plif.cpp
| M	src/shogun/structure/Plif.h
| M	src/shogun/structure/PlifArray.cpp
| M	src/shogun/structure/PlifArray.h
| M	src/shogun/structure/PlifMatrix.cpp
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/structure/PrimalMosekSOSVM.cpp
| M	src/shogun/structure/SegmentLoss.cpp
| M	src/shogun/structure/SegmentLoss.h
| M	src/shogun/structure/StructuredModel.cpp
| M	src/shogun/structure/TwoStateModel.cpp
| M	src/shogun/structure/libbmrm.cpp
| M	src/shogun/structure/libncbm.cpp
| M	src/shogun/structure/libp3bm.cpp
| M	src/shogun/structure/libppbm.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| M	src/shogun/transfer/multitask/LibLinearMTL.h
| M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| M	src/shogun/transfer/multitask/MultitaskCompositeMachine.cpp
| M	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskKernelMklNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskKernelPlifNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskKernelTreeNormalizer.h
| M	src/shogun/transfer/multitask/MultitaskL12LogisticRegression.cpp
| M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| M	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| M	src/shogun/transfer/multitask/MultitaskROCEvaluation.cpp
| M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| M	src/shogun/transfer/multitask/Task.cpp
| M	src/shogun/transfer/multitask/TaskGroup.cpp
| M	src/shogun/transfer/multitask/TaskTree.cpp
| M	src/shogun/ui/GUIClassifier.cpp
| M	src/shogun/ui/GUIConverter.cpp
| M	src/shogun/ui/GUIDistance.cpp
| M	src/shogun/ui/GUIFeatures.cpp
| M	src/shogun/ui/GUIFeatures.h
| M	src/shogun/ui/GUIHMM.cpp
| M	src/shogun/ui/GUIKernel.cpp
| M	src/shogun/ui/GUILabels.cpp
| M	src/shogun/ui/GUIMath.cpp
| M	src/shogun/ui/GUIPluginEstimate.cpp
| M	src/shogun/ui/GUIPreprocessor.cpp
| M	src/shogun/ui/GUISignals.cpp.orig
| M	src/shogun/ui/GUIStructure.h
| M	src/shogun/ui/SGInterface.cpp
| M	src/shogun/ui/SGInterface.h
|  
* commit 8ebb42b4a6c44b212ffa91b88b3d9e4017572f6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 5 08:35:31 2013 +0100
| 
|     fix illegal memory read
|     
|     - when incremental hash is computed on parameters it recurses even into
|     empty dynarrays underneath (stop this from happening)
|     - make dynarray length last ptr 0 based
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/features_dense_real_modular.cpp
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/base/Parameter.h
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/base/SGObject.h
| M	src/shogun/features/Subset.cpp
| M	src/shogun/features/SubsetStack.h
| M	src/shogun/lib/DataType.cpp
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/DynamicArray.h
| M	src/shogun/lib/DynamicObjectArray.h
| M	src/shogun/regression/gp/ExactInferenceMethod.cpp
|    
*   commit e20fd2519a82ca04e8d50ee7bc1949a933f579a5
|\  Merge: a5adf5e 481d9ce
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Feb 4 10:52:43 2013 -0800
| | 
| |     Merge pull request #856 from kmcquisten/FixEvalDirection
| |     
| |     Fixed minor bug in model selection that would erroneously report that it...
| |   
| * commit 481d9cef0c1f086836e0e419bfe9e3115a8c2c65
|/  Author: Kyle McQuisten <kyle.mcquisten@gmail.com>
|   Date:   Mon Feb 4 12:45:23 2013 -0600
|   
|       Fixed minor bug in model selection that would erroneously report that it was
|       maximizing the evaluation criterion instead of minimizing it.
|   
|   M	src/shogun/modelselection/GridSearchModelSelection.cpp
|   M	src/shogun/modelselection/RandomSearchModelSelection.cpp
|  
* commit a5adf5ee1770bdb910ee8784522ccf68d5966523
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Jan 27 23:55:04 2013 +0400
| 
|     Ported tapkee bugfix for missed mean subtraction
| 
| M	src/shogun/lib/tapkee/routines/pca.hpp
| M	src/shogun/lib/tapkee/tapkee_methods.hpp
|  
* commit 7c7451f9467eee646913d438c8d685a65f60d3ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 19 21:36:52 2013 +0100
| 
|     give us gdb backtraces if a test in libshogun/python* fails
| 
| M	examples/undocumented/libshogun/check.sh
| M	examples/undocumented/python_modular/check.sh
| M	examples/undocumented/python_static/check.sh
| A	src/.gdb
| M	src/Makefile.template
|  
* commit cca874bb34085beaa5ad4d1087a7d818868d3c2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 18 20:05:57 2013 +0100
| 
|     add serialization example
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/library_serialization.cpp
|  
* commit 273d26b6bd3fe7de953707bd20e3c0892419637b
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Jan 19 21:49:18 2013 +0400
| 
|     Ifdefined arpack include
| 
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
|  
* commit 9cae423ffb0181f2ff190b51a7d5300a9dc011b8
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Jan 19 21:47:08 2013 +0400
| 
|     Added missed guard for case when ARPACK is not available
| 
| M	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
|  
* commit d9d7fe2c2708ee023ec2063115968b0cc2fd0f50
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Jan 19 21:33:48 2013 +0400
| 
|     Disabled landmark isomap in libshogun
| 
| M	examples/undocumented/libshogun/converter_isomap.cpp
|  
* commit d3939f741a543063d63149cdab6236c9ff8aef12
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Jan 19 00:02:03 2013 +0400
| 
|     Fallback for python tapkee examples
| 
| M	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| M	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_isomap_modular.py
| M	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| M	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| M	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
| M	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| M	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
|  
* commit 3d866b11514d41ed02dd62ff20955a72afe83c59
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 15:34:33 2013 +0400
| 
|     Various fixes for tapkee integration
| 
| M	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_isomap_modular.py
| M	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| M	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| M	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
| M	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| M	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| M	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocalityPreservingProjections.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/StochasticProximityEmbedding.cpp
| M	src/shogun/lib/tapkee/tapkee_defines.hpp
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/tapkee_shogun.hpp
|  
* commit 6f913935ab9081a16bb2812962885fb1a18f6c8d
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 12:25:51 2013 +0400
| 
|     Disabled landmarks in isomap example
| 
| M	examples/undocumented/python_modular/converter_isomap_modular.py
|  
* commit 522fa05168ad1ba5fc5bdd34f56856f2dc21c717
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 02:59:30 2013 +0400
| 
|     More ifdefs to avoid errors with no eigen3 available
| 
| M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| M	src/shogun/lib/tapkee/tapkee_shogun.hpp
|  
* commit a1ce4d3faac2cdc1696fdbdac6c594a89c770f71
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 02:48:16 2013 +0400
| 
|     Final lapack cleanup in converter module
| 
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
|  
* commit dd6df902a6e72c0198ee856768ae60e5ba2f1dfd
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 02:44:38 2013 +0400
| 
|     More lapack genocide in converter module
| 
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 7694f60b8ffe89acb1b30eda4482766014700b68
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 02:39:27 2013 +0400
| 
|     Fixed ifdef in laplacian eigenmaps
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
|  
* commit 77d706b10114e154c27efdb3c09b89e53a9feef8
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Jan 18 02:34:03 2013 +0400
| 
|     Fixed requirement in static converter interface
| 
| M	src/shogun/ui/GUIConverter.cpp
|    
*   commit 7b337e4cf6710db358a844c41612aa24319eba03
|\  Merge: 5ee2148 237d969
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Jan 16 13:16:34 2013 -0800
| | 
| |     Merge pull request #854 from lisitsyn/tapkee_merging
| |     
| |     Tapkee library integration
| |   
| * commit 237d96947c42c0232c1f7f9674d9dbea1ab12aba
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 04:29:30 2013 +0400
| | 
| |     Added missed parameter for l-isomap
| | 
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| | M	src/shogun/lib/tapkee/tapkee_shogun.hpp
| |   
| * commit b25c032df983da73fb89d55f2c583259da85beb6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 04:19:11 2013 +0400
| | 
| |     Fixed mds and isomap eigennormalization
| | 
| | M	src/shogun/lib/tapkee/tapkee_methods.hpp
| |   
| * commit 0d7c48c8c0816a7d852d041e7de444be8810904d
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 03:44:50 2013 +0400
| | 
| |     Updated tapkee defines
| | 
| | M	src/shogun/lib/tapkee/tapkee_defines.hpp
| |   
| * commit 81fac137893747fc0532483abde701f225c193aa
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 03:28:16 2013 +0400
| | 
| |     Fixed backcompatibility sparse matrix building
| | 
| | M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| | M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| |   
| * commit 37983507d7a1c4f67b8e089abdd60355d51f7fcc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 03:17:36 2013 +0400
| | 
| |     Fallback for no arpack
| | 
| | M	src/shogun/lib/tapkee/tapkee_shogun.cpp
| |   
| * commit 0e69470e750a4d713a4cc08deef8118b29dd7061
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 02:37:44 2013 +0400
| | 
| |     Removed unnecessary omp include
| | 
| | M	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| |   
| * commit 5a9a3d7a390dfdea2ede7c87d51bc46be0eac992
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 02:20:23 2013 +0400
| | 
| |     Backcompatibility for older eigen3
| | 
| | M	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| | M	src/shogun/lib/tapkee/routines/locally_linear.hpp
| | M	src/shogun/lib/tapkee/tapkee.hpp
| | M	src/shogun/lib/tapkee/tapkee_defines.hpp
| | M	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| | M	src/shogun/lib/tapkee/utils/matrix.hpp
| | M	src/shogun/mathematics/eigen3.h
| |   
| * commit e6065b8fd7f94186d69da1008528d63bfae79707
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 02:19:59 2013 +0400
| | 
| |     Updated KLLE
| | 
| | M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| |   
| * commit d7b626abe36cbb587fd1b333623d74246382553e
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jan 13 02:19:48 2013 +0400
| | 
| |     Disabled superlu by default
| | 
| | M	src/configure
| |   
| * commit ae754efc70d1f0f3447be43a90b01ccaf64805c2
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Jan 12 23:42:38 2013 +0400
| | 
| |     Another missed step of tapkee integration
| | 
| | D	applications/edrt/faces.png
| | M	applications/edrt/faces_embedding.py
| | D	applications/edrt/lle_auto_k.py
| | M	applications/edrt/swissroll_embedding.py
| | M	applications/edrt/tutorial_examples/dm.py
| | M	applications/edrt/tutorial_examples/isomap.py
| | D	applications/edrt/tutorial_examples/kltsa.py
| | M	applications/edrt/tutorial_examples/lle.py
| | M	applications/edrt/tutorial_examples/lltsa.py
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| | D	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | M	src/interfaces/modular/Converter.i
| | M	src/interfaces/modular/Converter_includes.i
| | M	src/shogun/converter/DiffusionMaps.cpp
| | M	src/shogun/converter/DiffusionMaps.h
| | M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| | M	src/shogun/converter/Isomap.cpp
| | M	src/shogun/converter/Isomap.h
| | D	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| | D	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| | M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| | M	src/shogun/converter/LaplacianEigenmaps.cpp
| | M	src/shogun/converter/LaplacianEigenmaps.h
| | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| | M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/converter/LocalTangentSpaceAlignment.h
| | M	src/shogun/converter/LocalityPreservingProjections.cpp
| | M	src/shogun/converter/LocalityPreservingProjections.h
| | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | M	src/shogun/converter/LocallyLinearEmbedding.h
| | M	src/shogun/converter/MultidimensionalScaling.cpp
| | M	src/shogun/converter/MultidimensionalScaling.h
| | M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| | M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
| | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | M	src/shogun/converter/StochasticProximityEmbedding.h
| | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | M	src/shogun/lib/slep/slep_mc_plain_lr.cpp
| | M	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| | M	src/shogun/mathematics/eigen3.h
| |   
| * commit ca6b4092ce68235da8a2d2b04f7ca1ba70eac563
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Jan 12 23:35:45 2013 +0400
| | 
| |     Integrated the tapkee library
| | 
| | A	applications/edrt/faces.png
| | A	src/shogun/lib/tapkee/callbacks/eigen_callbacks.hpp
| | A	src/shogun/lib/tapkee/callbacks/neighbor_callback.hpp
| | A	src/shogun/lib/tapkee/callbacks/pimpl_callbacks.hpp
| | A	src/shogun/lib/tapkee/callbacks/precomputed_callbacks.hpp
| | A	src/shogun/lib/tapkee/callbacks/traits.hpp
| | A	src/shogun/lib/tapkee/neighbors/connected.hpp
| | A	src/shogun/lib/tapkee/neighbors/covertree.hpp
| | A	src/shogun/lib/tapkee/neighbors/covertree_point.hpp
| | A	src/shogun/lib/tapkee/neighbors/neighbors.hpp
| | A	src/shogun/lib/tapkee/routines/diffusion_maps.hpp
| | A	src/shogun/lib/tapkee/routines/eigen_embedding.hpp
| | A	src/shogun/lib/tapkee/routines/generalized_eigen_embedding.hpp
| | A	src/shogun/lib/tapkee/routines/isomap.hpp
| | A	src/shogun/lib/tapkee/routines/laplacian_eigenmaps.hpp
| | A	src/shogun/lib/tapkee/routines/locally_linear.hpp
| | A	src/shogun/lib/tapkee/routines/matrix_operations.hpp
| | A	src/shogun/lib/tapkee/routines/matrix_projection.hpp
| | A	src/shogun/lib/tapkee/routines/multidimensional_scaling.hpp
| | A	src/shogun/lib/tapkee/routines/pca.hpp
| | A	src/shogun/lib/tapkee/routines/spe.hpp
| | A	src/shogun/lib/tapkee/tapkee.hpp
| | A	src/shogun/lib/tapkee/tapkee_defines.hpp
| | A	src/shogun/lib/tapkee/tapkee_methods.hpp
| | A	src/shogun/lib/tapkee/tapkee_shogun.cpp
| | A	src/shogun/lib/tapkee/tapkee_shogun.hpp
| | A	src/shogun/lib/tapkee/utils/any.hpp
| | A	src/shogun/lib/tapkee/utils/arpack_wrapper.hpp
| | A	src/shogun/lib/tapkee/utils/fibonacci_heap.hpp
| | A	src/shogun/lib/tapkee/utils/logging.hpp
| | A	src/shogun/lib/tapkee/utils/matrix.hpp
| | A	src/shogun/lib/tapkee/utils/time.hpp
| |   
* | commit 5ee214841afc62980525a53e5fa4a20d1ae5f1e4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jan 15 21:22:54 2013 +0100
| | 
| |     Only ever enable swig's directors with python (Closes #843)
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/interfaces/modular/Distance.i
| | M	src/interfaces/modular/Evaluation.i
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Kernel.i
| | M	src/interfaces/modular/Latent.i
| | M	src/interfaces/modular/Structure.i
| | M	src/interfaces/modular/modshogun.i
| |   
* | commit 354c32bfd0101fb1d70d70267dfbac4e5f415c56
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jan 15 21:16:44 2013 +0100
| | 
| |     don't define SGMatrixList in SGMatrix but vice versa
| | 
| | M	src/shogun/lib/SGMatrix.h
| | M	src/shogun/lib/SGMatrixList.h
| |   
* | commit f710d03f8e0795af311262b63e08daa14373d7e5
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Mon Jan 14 20:50:13 2013 +0100
|   
|       fix ordering of const - closes #855
|   
|   M	src/shogun/lib/SGMatrixList.cpp
|   M	src/shogun/lib/SGMatrixList.h
|  
* commit a4e97e3da79a6493078dc8b272f46091305ef2c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 10 08:36:58 2013 +0100
| 
|     fix serialization for sparse features and serializableasciireader
|     
|     thanks Christian Hentschel for the patch
| 
| M	src/shogun/io/SerializableAsciiReader00.cpp
|    
*   commit b0de6fa2862ea92499b91cb87331d5adb9fb1ee2
|\  Merge: 1565a51 f74dcc6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 9 13:15:44 2013 -0800
| | 
| |     Merge pull request #853 from karlnapf/master
| |     
| |     attempt to heal build
| |   
| * commit f74dcc650b65f1050166386102440ee3a74d51d5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 9 21:14:47 2013 +0000
| | 
| |     refactoring
| | 
| | M	src/shogun/statistics/MMDKernelSelectionComb.h
| |   
| * commit b5d9e0b499a956d365f16bb505a57c0578e3e849
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 9 21:13:29 2013 +0000
| | 
| |     another attempt to heal build
| | 
| | M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
| |   
| * commit 23cb38cc0d4c4275a4195270283b44b32ed57e04
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 9 21:11:42 2013 +0000
|   
|       attempt to heal build
|   
|   M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.cpp
|    
*   commit 1565a5127c3fe0229dfb1504c54aee4b9a4006f1
|\  Merge: d3d8b99 76f1492
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 8 17:17:14 2013 -0800
| | 
| |     Merge pull request #852 from karlnapf/master
| |     
| |     another kernel selection strategy: median
| |   
| * commit 76f1492c71e61d44c580ff0351033bb6bbdebb78
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 9 01:13:50 2013 +0000
| | 
| |     initial commit of median kernel selection strategy
| | 
| | A	src/shogun/statistics/MMDKernelSelectionMedian.cpp
| | A	src/shogun/statistics/MMDKernelSelectionMedian.h
| |   
| * commit 5ef530d24d411b0e00b77d1f821cad7999a17df5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 9 01:13:33 2013 +0000
| | 
| |     updated copyright year to 2013
| | 
| | M	src/shogun/statistics/HSIC.cpp
| | M	src/shogun/statistics/HSIC.h
| | M	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | M	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| | M	src/shogun/statistics/MMDKernelSelection.h
| | M	src/shogun/statistics/MMDKernelSelectionComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionComb.h
| | M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.cpp
| | M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
| | M	src/shogun/statistics/MMDKernelSelectionCombOpt.h
| | M	src/shogun/statistics/MMDKernelSelectionMax.cpp
| | M	src/shogun/statistics/MMDKernelSelectionMax.h
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/QuadraticTimeMMD.h
| | M	src/shogun/statistics/TestStatistic.cpp
| | M	src/shogun/statistics/TestStatistic.h
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit 8aefa8ae1ec412a29355e7b856e93fa30ea2e5a7
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 9 01:06:49 2013 +0000
|   
|       some minor extensions that are needed for median kernel selection for MMD and Gaussian kernels.
|       
|       -new getters/setters
|       -new EStatisticType enum
|   
|   M	src/shogun/statistics/HSIC.h
|   M	src/shogun/statistics/LinearTimeMMD.cpp
|   M	src/shogun/statistics/LinearTimeMMD.h
|   M	src/shogun/statistics/MMDKernelSelection.cpp
|   M	src/shogun/statistics/QuadraticTimeMMD.h
|   M	src/shogun/statistics/TestStatistic.h
|   M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
|   M	src/shogun/statistics/TwoDistributionsTestStatistic.h
|    
*   commit d3d8b995916e7c95b4e2f6a66ac93f8a275f70bf
|\  Merge: 7220e20 d122f70
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jan 5 23:40:46 2013 +0100
| | 
| |     make function protected
| |   
| * commit d122f708848495c8e52b5e29040e83a0d5c659e4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jan 5 19:55:00 2013 +0100
| | 
| |     make the function available even w/o lapack
| | 
| | M	src/shogun/statistics/MMDKernelSelectionComb.h
| | M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.h
| |   
* | commit 7220e20dd08f017abd69dcbdc51fd0fdb50eb679
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Jan 5 19:55:00 2013 +0100
|   
|       make the function available even w/o lapack
|   
|   M	src/shogun/statistics/MMDKernelSelectionComb.h
|   M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.h
|  
* commit 2db353179ac2f4378cfa11fc7ad691ead7c9a05e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 13:06:36 2013 +0100
| 
|     fix compile error when lapack is not available
| 
| M	src/shogun/statistics/MMDKernelSelectionComb.cpp
|    
*   commit 1857b40fd23de114fa08e7bc32aff664f6c95109
|\  Merge: 44b6c1f f4cc9ee
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 15:22:30 2013 -0800
| | 
| |     Merge pull request #850 from karlnapf/master
| |     
| |     last kernel selection strategy and bugfixes
| |   
| * commit f4cc9ee31cd307afcafd56a25f4ca40f5705e88f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 23:17:30 2013 +0000
| | 
| |     fix memory bugs/leaks caused by SGReferenced and static context. Do everything by hand now. Works now in valgrind tests
| | 
| | M	src/shogun/statistics/MMDKernelSelectionCombMaxL2.cpp
| | M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
| |   
| * commit 7172f7b8c977ae160c7711e0ff01e0d067191bd8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 22:56:56 2013 +0000
| | 
| |     added test for max mmd l2 kernel selection
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit 2472a0c1abf65dec3e22e3d7c3a92b7e78c6d463
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 22:55:37 2013 +0000
| | 
| |     added new kernel selection strategy: max mmd l2 norm regularized convex conbination. works
| | 
| | A	src/shogun/statistics/MMDKernelSelectionCombMaxL2.cpp
| | A	src/shogun/statistics/MMDKernelSelectionCombMaxL2.h
| |   
| * commit 24b8bfde7638dcf09b9caa12c5d2cda5222561c8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 22:54:56 2013 +0000
| | 
| |     fixed a memory leak due to static context SGReferenced
| | 
| | M	src/shogun/statistics/MMDKernelSelectionComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
| |   
| * commit bbb4f60dd650335d3d530531fa3bee23a2517b2f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 22:54:06 2013 +0000
| | 
| |     fixed virtual method call crashes
| | 
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| |   
| * commit 326e41e59213ab639395c587e1b8037e45161d5d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 19:23:11 2013 +0000
| | 
| |     typo correction
| | 
| | M	src/shogun/statistics/MMDKernelSelectionMax.h
| |   
| * commit b9d78917394f80db975971d76ca5ad8f3ab0e0a3
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 2 19:23:05 2013 +0000
|   
|       refactored existing combined kernel selection classes a bit to make ground for a new class. Now got a base class which solves the optimisation problem for a given Q matrix and MMDs vector
|   
|   M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
|   A	src/shogun/statistics/MMDKernelSelectionComb.cpp
|   A	src/shogun/statistics/MMDKernelSelectionComb.h
|   A	src/shogun/statistics/MMDKernelSelectionCombOpt.cpp
|   A	src/shogun/statistics/MMDKernelSelectionCombOpt.h
|   D	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
|   D	src/shogun/statistics/MMDKernelSelectionOptComb.h
|    
*   commit 44b6c1f673f4ce72bc8668e71130000e88a43483
|\  Merge: 9a3c75e 77d668f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 08:30:49 2013 -0800
| | 
| |     Merge pull request #849 from karlnapf/master
| |     
| |     MMD kernel selection work
| |   
| * commit 77d668f68843531a4e8a171c440fa4f929f43ea1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 16:16:26 2013 +0000
| | 
| |     added a maxmmd kernel selection test for the quadratic time mmd
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit 71bc32ee92cbe6f1ea038d9f0f7ab1badfaea5c0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 16:16:11 2013 +0000
| | 
| |     implemented compute_statistic(bool multiple_kernels)
| | 
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/QuadraticTimeMMD.h
| |   
| * commit 3aa96910c55b3c8a3895bd467547004199d1b785
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 16:15:53 2013 +0000
| | 
| |     removed a kernel init which is not necessary and causes problems with combined kernels
| | 
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| |   
| * commit 8b1a6f0b26fbaf2322305dd60f6bf8f2310aa01e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 15:21:07 2013 +0000
| | 
| |     added maxmmd test for linear time MMD
| | 
| | M	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit 2533756d5fe986e887b1ab38de9dd1c9af35e5ed
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 2 15:20:50 2013 +0000
| | 
| |     added single variance test
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 0935200ab78d1ddb251cc258b7e7497f64d6e396
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 2 15:20:26 2013 +0000
|   
|       assed forgotten quare root, was wrong before
|   
|   M	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
|    
*   commit 9a3c75ecfab9fb1293a47dfdf300373865029d34
|\  Merge: 0318da9 47cd86f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Dec 31 03:40:28 2012 -0800
| | 
| |     Merge pull request #848 from karlnapf/master
| |     
| |     quickfix  for broken build
| |   
| * commit 47cd86f2f4d9d1d81f3722020f7612a908e1df1d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Dec 31 11:39:38 2012 +0000
| | 
| |     comment out example since it breaks build
| | 
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| |     
* |   commit 0318da9af696117a4ff0455a73b8454f820af29d
|\ \  Merge: a2b8a09 5ccd9c7
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Dec 31 03:10:19 2012 -0800
| |   
| |       Merge pull request #847 from karlnapf/master
| |       
| |       First working set of kernel selection methods
| |   
| * commit 5ccd9c740a3e3169c44c08a358c6eedcd1eb3c5d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Dec 31 00:28:52 2012 +0000
| | 
| |     added example for kernel selection for linear time algos
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/statistics_mmd_kernel_selection.cpp
| |   
| * commit a9258c823ea710dbf9b2dd961f97a51150216a4a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Dec 31 00:28:31 2012 +0000
| | 
| |     various fixes, now first working set of kernel selection classes with new multiple kernel style methods
| | 
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| |   
| * commit c4d9c70b3f8bb8aa1b844d8ed302f7917143a388
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Dec 31 00:28:03 2012 +0000
| | 
| |     removed memory leaking SG_REF
| | 
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| |   
| * commit 4fb0f00e9d03f74584c5779cd5e45b661341285d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 23:17:44 2012 +0000
| | 
| |     another major bunch of changes temp commit
| | 
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| | M	src/shogun/statistics/MMDKernelSelectionMax.cpp
| | M	src/shogun/statistics/MMDKernelSelectionMax.h
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.h
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| | M	src/shogun/statistics/QuadraticTimeMMD.h
| |   
| * commit 310aeb1767faab36d25284425b2de7b75470e1be
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 22:43:16 2012 +0000
| | 
| |     temp state of work, doesnt work/compile, but need to fix a broken build now
| | 
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| | M	src/shogun/statistics/MMDKernelSelection.h
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.h
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
| |   
| * commit ce9f865c75b55dde6478167540e42c602d845de7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 22:42:35 2012 +0000
| | 
| |     updated errors messages
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 28b45ba0912d986f25f624901829a80668889c21
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 22:42:21 2012 +0000
| | 
| |     moved getter and setter for kernel to the header file and made it inline
| | 
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| |   
| * commit 664db238b24f7cabab99015669cac9f0fe3c6c47
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sun Dec 30 22:41:57 2012 +0000
|   
|       added get_delete_data() method
|   
|   M	src/shogun/lib/List.h
|    
*   commit a2b8a090c976944387e9f23a44789f936c51a469
|\  Merge: 38c9b31 0d7fde3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 07:52:48 2012 -0800
| | 
| |     Merge pull request #846 from karlnapf/master
| |     
| |     More work on kernel selection for linear time MMD test
| |   
| * commit 0d7fde3b62afa1e8d7abaed0ca2680c59dc9bb4f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 15:35:36 2012 +0000
| | 
| |     added test for compute_statistic_and_Q in order to make MKL style kernel selection possible
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 877a80590a27a9ff8c2cc1ba43cb9903c0d8f447
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 15:31:15 2012 +0000
| | 
| |     -fixed a possible bug in compute_statistic_and_variance
| |     
| |     -finally, compute_statistic_and_Q works in a test case after fixing more bugs and optimisations
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 440dbb596298ec147b0468944d32ca9e59d4f591
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Dec 30 15:29:17 2012 +0000
| | 
| |     added method to compute single maximum element of matrix
| | 
| | M	src/shogun/lib/SGMatrix.cpp
| | M	src/shogun/lib/SGMatrix.h
| |   
| * commit 3b98ef39b2b05592ee180565efeb0a8fa5f60623
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 21:46:47 2012 +0000
| | 
| |     bugfixes and optimisations
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 6366925928cb4ec94ba86bd39e047f309d69c992
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 21:46:31 2012 +0000
| | 
| |     removed typo which caused assertion error
| | 
| | M	src/shogun/kernel/Kernel.h
| |   
| * commit c8841304b00ecdda3c3114f861f4b6b345e8cc31
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 21:46:18 2012 +0000
| | 
| |     made example work compile again
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 26466827395512314f053f72a6edc64de169fa8a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 19:16:10 2012 +0000
| | 
| |     removed old non-streaming code for Q matrix computation
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 91800981dbff82f806fad8a9bd5c850605a78b32
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 19:15:33 2012 +0000
| | 
| |     added "not yet tested" messages as a reminder
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit d29a970f447df65cec6e370931b3191762bb7f41
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 19:14:38 2012 +0000
| | 
| |     integrated new online computation of Q
| | 
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| |   
| * commit dc2a2c6c3774829c64fc6d3c58369a683e5283a9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 19:06:48 2012 +0000
| | 
| |     corrections and a first compiling version of online Q matrix computation
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 9d4b8a0fc848784c4971b7ff2fbb6baa02f9db22
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 18:46:55 2012 +0000
| | 
| |     Some work towards streaming style MKL kernel selection for the linear time MMD. Compiles but doesn not work yet
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
| | M	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| |   
| * commit afdb4d8526135c343dfc186f0c4e906cd278df68
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 26 18:45:52 2012 +0000
| | 
| |     debug messages
| | 
| | M	src/shogun/statistics/MMDKernelSelection.cpp
| |   
| * commit 732995d88cb6b2e70f51ae27dc8912d3471e4a57
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Dec 26 18:45:24 2012 +0000
|   
|       added preallocation possibility to compute_kernel_diagonal
|   
|   M	src/shogun/kernel/Kernel.h
|  
* commit 38c9b31be020299d4b81e5fdf70be8a489990129
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 29 08:38:58 2012 +0100
| 
|     fix compile error when lapack is unavailable
| 
| M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
|  
* commit 479cf816b0a208b9b8b470d7d546812f5c1c0def
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Dec 15 03:02:15 2012 +0400
| 
|     Moved some code out of headers in machines
| 
| M	src/shogun/machine/BaseMulticlassMachine.cpp
| M	src/shogun/machine/BaseMulticlassMachine.h
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/KernelMulticlassMachine.cpp
| M	src/shogun/machine/KernelMulticlassMachine.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
|    
*   commit fa3566b5db4b4597ed4fb60f2317ddad84067998
|\  Merge: bbb2be6 46b3f73
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 13 09:54:14 2012 -0800
| | 
| |     Merge pull request #845 from karlnapf/master
| |     
| |     some clean ups towars kernel selection framework for MMD
| |   
| * commit 46b3f73ccc59a60ab88d72b8e7853c8f9d18779f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 13 17:49:17 2012 +0000
| | 
| |     removed kernel choice code due to soon to be introduced new framework for that
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 836d10ab4958884c178df3ab1766b9aeb732993b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 13 17:48:54 2012 +0000
| | 
| |     initialise optimisation parameters
| | 
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| |   
| * commit 33f4eb129ef7414ff37c466fc0d935e2089d6431
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 13 17:48:43 2012 +0000
| | 
| |     documentation
| | 
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.h
| |   
| * commit 7303295adfaf698eb7d6c2ec724b7e95969c2af1
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Dec 13 17:48:20 2012 +0000
|   
|       removed old kernel selection examples due to soon to be introduced new framework
|   
|   M	examples/undocumented/libshogun/Makefile
|   D	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
|   D	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
|  
* commit bbb2be6fad1bb8a8d7107f76b192ec724133b3a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 11 08:31:44 2012 +0100
| 
|     Mention how to download data already in README and quieten ldconfig error (addresses Issue #815)
| 
| M	src/Makefile.template
| M	src/README
|  
* commit 114617a6b1585b6e5cb24fcd806b38a90ecde542
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Dec 8 14:53:25 2012 +0400
| 
|     Made swig-friendly subkernel weights method available in ckernel
| 
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/Kernel.h
|  
* commit 2074c39b7d2032b74fff7e4716507db26fba04de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 6 08:51:26 2012 +0100
| 
|     fix build error when lapack is not available
| 
| M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
|    
*   commit dcb1fa7364f50321ed68b06693962dce45fbfa60
|\  Merge: 5925f33 9712e5a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 5 03:49:48 2012 -0800
| | 
| |     Merge pull request #844 from karlnapf/master
| |     
| |     Some work towards kernel selection for MMD tests
| |   
| * commit 9712e5a3fda5441cb67edac5352de01cafcbbc74
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 23:43:05 2012 +0000
| | 
| |     removed unused variable
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 2c4a78ac28be8c86d8237aac56cae692e46c4645
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 23:38:30 2012 +0000
| | 
| |     first compiling version of optimal kernel weight selection for the linear time MMD
| | 
| | M	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| |   
| * commit d2d13f9b535a539d3fa683ed5a449dc954f555fc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 23:37:44 2012 +0000
| | 
| |     added a getter for m
| | 
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit c51e0ed10ab597f5eb82d5f527eb42658c17e502
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 23:37:30 2012 +0000
| | 
| |     added new method for computing all h-terms and some minor changes
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 658c95af23b42f00485bca13fe7883be24ccb4dc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 19:03:33 2012 +0000
| | 
| |     Add new kernel selection framework for MMD to news
| | 
| | M	src/NEWS
| |   
| * commit bd667386fb887756055c48e19890be7a9cd9ea36
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 19:03:03 2012 +0000
| | 
| |     made lapack related methods private (not called from outside)
| | 
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 2ac0b6dac094c0bd27e0d03cb2f5342eb29e6622
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 19:02:44 2012 +0000
| | 
| |     some name changes and a draft for a new class for combined kernel weight selection (not ready yet)
| | 
| | A	src/shogun/statistics/MMDKernelSelectionMax.cpp
| | A	src/shogun/statistics/MMDKernelSelectionMax.h
| | A	src/shogun/statistics/MMDKernelSelectionOptComb.cpp
| | A	src/shogun/statistics/MMDKernelSelectionOptComb.h
| | A	src/shogun/statistics/MMDKernelSelectionOptSingle.cpp
| | A	src/shogun/statistics/MMDKernelSelectionOptSingle.h
| | D	src/shogun/statistics/MaxMMDKernelSelection.cpp
| | D	src/shogun/statistics/MaxMMDKernelSelection.h
| | D	src/shogun/statistics/OptimalLinearMMDKernelSelection.cpp
| | D	src/shogun/statistics/OptimalLinearMMDKernelSelection.h
| |   
| * commit d7355ad7c4bb0646e4fffa217881d4ff03d15ec2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 16:59:14 2012 +0000
| | 
| |     new class for MMD kernel selection: Optimal kernel selection for the linear time MMD
| | 
| | A	src/shogun/statistics/OptimalLinearMMDKernelSelection.cpp
| | A	src/shogun/statistics/OptimalLinearMMDKernelSelection.h
| |   
| * commit facd389b0c4614527554cad8ade5a245b7832394
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 00:24:40 2012 +0000
| | 
| |     added new class for kernel selection for MMD based two-sample tests and a concrete instance for using the kernel which leads to the maximum MMD - more to follow
| | 
| | A	src/shogun/statistics/MMDKernelSelection.cpp
| | A	src/shogun/statistics/MMDKernelSelection.h
| | A	src/shogun/statistics/MaxMMDKernelSelection.cpp
| | A	src/shogun/statistics/MaxMMDKernelSelection.h
| |   
| * commit d8ecea229b17d790850db02df4acd77ac53da406
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Dec 4 00:23:49 2012 +0000
| | 
| |     added setter for underlying kernel
| | 
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| |   
| * commit 3a6e9ce9ba8e814f88b382dbb106d19537c40f27
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Dec 4 00:23:24 2012 +0000
|   
|       added obtain_from_generic function which casts an SGObject* to a CKernel* if possible and throws an error otherwise
|   
|   M	src/shogun/kernel/Kernel.cpp
|   M	src/shogun/kernel/Kernel.h
|  
* commit 5925f331e7b38e96db9ede4633eb0992f862ad86
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 4 08:29:27 2012 +0100
| 
|     test for catlas support in configure
| 
| M	src/configure
| M	src/shogun/lib/SGVector.cpp
|  
* commit c9f2c1e203a8b3c10071a71b4d59b9a9f293a1c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 3 11:53:11 2012 +0100
| 
|     update news
| 
| M	src/NEWS
|  
* commit 411fbab4f0dbe4a7ef1686a92f9a145d65707bc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 2 23:04:10 2012 +0100
| 
|     add debug mode to parameter example
| 
| M	examples/undocumented/libshogun/base_load_file_parameters.cpp
|  
* commit 743bc805b037f87d15c0a3b0bac69efaaac74e98
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 2 23:01:58 2012 +0100
| 
|     dynarray serialization fixes
|     
|     - allow to resize array to 0 bytes (effectively deleting the array)
|     - add option to force resize exactly to requested size
|     - add serialization pre processing to array - shrink to #elements to
|     avoid uninited memory accesses
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/lib/DynamicArray.h
| M	src/shogun/lib/DynamicObjectArray.h
|  
* commit 3e944b3e761c155710925311d09e7c8be679f980
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 2 23:01:29 2012 +0100
| 
|     no need to check for NULL before SG_UNREF
| 
| M	src/shogun/base/Parameter.cpp
|  
* commit 2fb6247a9838503f12516e4ded5a07e6bb95c2d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 2 22:58:32 2012 +0100
| 
|     cosmetics
|     
|     add newline
| 
| M	src/shogun/kernel/Kernel.h
|  
* commit 57d201ef0d2e85bd21c9a85302d308bb1d4461b3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 30 17:20:52 2012 +0100
| 
|     use malloc instead of calloc in dynarray
| 
| M	src/shogun/base/DynArray.h
|  
* commit 0372dd02f75d03be23b7d03a1d1ce1829617282a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 30 17:15:48 2012 +0100
| 
|     add getters for SG data types to enable further typemap converted
|     processing in director enabled classes
| 
| M	src/shogun/lib/SGMatrix.h
| M	src/shogun/lib/SGSparseMatrix.h
| M	src/shogun/lib/SGSparseVector.h
| M	src/shogun/lib/SGString.h
| M	src/shogun/lib/SGStringList.h
| M	src/shogun/lib/SGVector.h
|  
* commit 6ccd8005716581e70cfececef4cd96a5f8e977df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 30 08:33:46 2012 +0100
| 
|     add forgotten example and fix minor typo
| 
| A	examples/undocumented/libshogun/library_dynarray.cpp
| M	src/interfaces/python_modular/CustomKernel_protocols.i
| M	src/interfaces/python_modular/DenseFeatures_protocols.i
|  
* commit b2aa0873566ba5bca1285bd6dee2c0b62fb97951
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 30 08:28:48 2012 +0100
| 
|     don't use memset in DynArray or zero unused memory
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/ParameterMap.cpp
| M	src/shogun/lib/DynamicArray.h
| M	src/shogun/lib/DynamicObjectArray.h
| M	src/shogun/structure/DynProg.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/PlifArray.cpp
|  
* commit 1f7a6cca7f7bb58616eb0f2b9f884617c49b19f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 22:07:22 2012 +0100
| 
|     fixup cygwin build -> never use __reserved __keywords!
| 
| M	src/shogun/structure/DirectorStructuredModel.h
| M	src/shogun/structure/MulticlassModel.cpp
| M	src/shogun/structure/StructuredModel.cpp
| M	src/shogun/structure/StructuredModel.h
| M	src/shogun/structure/libp3bm.cpp
|  
* commit 8a5274f3ea1a32182a5e6c6af08fc012a48df8c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 10:34:33 2012 +0100
| 
|     SGSparseVectorEntry is in fact a struct
| 
| M	src/shogun/io/File.h
|  
* commit a85550094ec860e020803d5a7b5540fd285e3079
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 10:29:41 2012 +0100
| 
|     fix compile error when pthreads are not available
| 
| M	src/shogun/lib/SGReferencedData.cpp
|  
* commit fab840bb26e039e7ae8a703ab4fd643ba31e3c36
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 09:48:32 2012 +0100
| 
|     remove leftin function call
| 
| M	src/configure
|  
* commit c333f44e165a880497253af95d049831c852cb52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 09:28:29 2012 +0100
| 
|     fix  error: cannot convert ‘shogun::SGMatrix<double>’ to ‘const float64_t*’ in assignment
|     
|     in converter/LocalTangentSpaceAlignment.cpp
| 
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
|  
* commit d517033406b1d90e4fb6400224762a951b843ab9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 09:11:06 2012 +0100
| 
|     make pthreads optional
| 
| M	src/configure
|  
* commit 9417651b7b96268510c64454e720cee08a3a4328
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 08:29:36 2012 +0100
| 
|     fix compile error on cygwin
| 
| M	src/shogun/structure/StructuredModel.cpp
| M	src/shogun/structure/StructuredModel.h
|  
* commit 228f6ab20ea16dd35d4c0f4056f93ef9507ac047
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 29 08:25:59 2012 +0100
| 
|     drop -fPIC / pthreads on cygwin
| 
| M	src/configure
|  
* commit e22e574f40b365d13d374bdb53ebf69eafbbe742
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 28 21:13:17 2012 +0100
| 
|     add load/save functions to sparsematrix/vector/string/stringlist
| 
| M	src/shogun/io/File.cpp
| M	src/shogun/io/File.h
| M	src/shogun/lib/SGSparseMatrix.cpp
| M	src/shogun/lib/SGSparseMatrix.h
| M	src/shogun/lib/SGSparseVector.cpp
| M	src/shogun/lib/SGSparseVector.h
| M	src/shogun/lib/SGString.cpp
| M	src/shogun/lib/SGString.h
| M	src/shogun/lib/SGStringList.cpp
| M	src/shogun/lib/SGStringList.h
|  
* commit 1a41f826a1b8a13f9e4aa86d7e11d9202dc851dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 28 20:56:55 2012 +0100
| 
|     test for HDF5 in example
| 
| M	examples/undocumented/libshogun/library_hdf5.cpp
|  
* commit 4774b68e4fb1f9ad981de8bf75f42dafc2ec8627
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 28 20:04:18 2012 +0100
| 
|     implement dummies for missing get and setters in hdf5 sparsematrix/stringlist
| 
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
|    
*   commit cd9367c28de2df247907490d12bc56604f440124
|\  Merge: c2983fb d245e1b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Nov 28 10:51:59 2012 -0800
| | 
| |     Merge pull request #842 from vigsterkr/master
| |     
| |     Fix warning in libncbm
| |   
| * commit d245e1b12acc26f8604b9171f70b0058006189d9
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Wed Nov 28 17:44:28 2012 +0100
|   
|       Fix warning in libncbm
|   
|   M	src/shogun/structure/libncbm.cpp
|  
* commit c2983fb04f8394fa2e5a6cfc7e1c835ab8fbfd97
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 28 17:29:46 2012 +0100
| 
|     use overloading for all file functions
|     
|     - change set/get sparse_matrix
|     - change set/get ndarray
|     - change set/get string_list
| 
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/AsciiFile.h
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/BinaryFile.h
| M	src/shogun/io/File.cpp
| M	src/shogun/io/File.h
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
|  
* commit cb56c98b97bd259a507be3aec37d63985a62ff68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 28 08:34:42 2012 +0100
| 
|     fix hdf5file (implement missing functions) and add toy data set and example
| 
| M	data
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/library_hdf5.cpp
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
|    
*   commit b093d9e7b3971edd88930a1c74dba323daf59b84
|\  Merge: 11acf90 31e07b6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 27 23:13:52 2012 -0800
| | 
| |     Merge pull request #841 from vigsterkr/master
| |     
| |     Define EMachineType for the SO learners
| |   
| * commit 31e07b62b2916e118c4554541ede0e40330c18ea
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Tue Nov 27 23:01:24 2012 +0100
|   
|       Define EMachineType for the SO learners
|   
|   M	src/shogun/machine/Machine.h
|   M	src/shogun/structure/CCSOSVM.cpp
|   M	src/shogun/structure/CCSOSVM.h
|   M	src/shogun/structure/DualLibQPBMSOSVM.cpp
|   M	src/shogun/structure/DualLibQPBMSOSVM.h
|   M	src/shogun/structure/PrimalMosekSOSVM.cpp
|   M	src/shogun/structure/PrimalMosekSOSVM.h
|    
*   commit 11acf9002c3f3a92e9ab5de2dbd3c4125228f887
|\  Merge: 1d57638 46a1f28
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 27 13:51:54 2012 -0800
| | 
| |     Merge pull request #840 from vigsterkr/master
| |     
| |     Fix warnings in libncbm and StructuredModel
| |   
| * commit 46a1f28ac4f81492ee1733e05f33269eb0f543a2
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Tue Nov 27 22:50:39 2012 +0100
|   
|       Fix warnings in libncbm and StructuredModel
|   
|   M	src/shogun/structure/StructuredModel.cpp
|   M	src/shogun/structure/libncbm.cpp
|  
* commit 1d57638fa6365234e9b1639c4e5f8e73e711b8cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 27 22:34:01 2012 +0100
| 
|     include lib common to make data types know
| 
| M	src/shogun/structure/StructuredModel.h
|  
* commit b7a678696238462e2fa39cea95bdca4c17d91dca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 27 21:31:51 2012 +0100
| 
|     compile fix for csharp (directors & SO)
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit b4322ff9f112f0265317ea02ec499b0ad8d023b1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 27 21:28:32 2012 +0100
| 
|     Refactoring
|     
|     - Use template specializations in SGVector functions
|     - Use overloading in File get/set matrix
|     - Move load/save over from DenseFeatures to SGMatrix
| 
| M	src/shogun/features/DenseFeatures.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/AsciiFile.h
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/BinaryFile.h
| M	src/shogun/io/File.h
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
| M	src/shogun/lib/SGMatrix.cpp
| M	src/shogun/lib/SGMatrix.h
| M	src/shogun/lib/SGVector.cpp
| M	src/shogun/lib/SGVector.h
|  
* commit 315b058291d6d0ad9ddc1e8b791f53d6e7938615
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Nov 28 00:01:33 2012 +0400
| 
|     Flexible director risk
| 
| M	examples/undocumented/python_modular/graphical/so_multiclass_director_BMRM.py
| M	src/shogun/structure/DirectorStructuredModel.h
| M	src/shogun/structure/StructuredModel.cpp
| M	src/shogun/structure/StructuredModel.h
|    
*   commit 329a232fc58eaed71dcb52e79911f0a86768fc39
|\  Merge: 3dd2ab3 a084140
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Nov 26 08:41:12 2012 -0800
| | 
| |     Merge pull request #838 from vigsterkr/master
| |     
| |     Fix macro check in SGVector
| |   
| * commit a0841409f26aa223e988bb49ae23b732218b9428
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Mon Nov 26 13:23:03 2012 +0100
| | 
| |     Fix macro check in SGVector
| |     OSX's accelerator framework provides defines catlas_sset
| |     and catlas_dset functions.
| | 
| | M	src/shogun/lib/SGVector.cpp
| |     
* |   commit 3dd2ab3d384349d5e8a1b6d0d45048155d8af12b
|\ \  Merge: ec1f088 c87fcdd
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Mon Nov 26 04:36:46 2012 -0800
| |   
| |       Merge pull request #837 from vigsterkr/so-dev
| |       
| |       Fix warnings in libbmrm and libncbm
| |   
| * commit c87fcdd8dd840ee9afbc3a00212bdf67d901e69a
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Mon Nov 26 12:46:18 2012 +0100
|   
|       Fix warnings in libbmrm and libncbm
|   
|   M	src/shogun/structure/libbmrm.cpp
|   M	src/shogun/structure/libncbm.cpp
|  
* commit ec1f0883fbfa6855bdf1720c5a15fc0cc7a65447
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 26 08:30:43 2012 +0100
| 
|     Misc cleanups
|     
|     - use SGVector's load function in labels
|     - move floor_log to CMath
|     - fix doxygen warning
| 
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/labels/DenseLabels.cpp
| M	src/shogun/lib/SGSparseVector.cpp
| M	src/shogun/lib/SGSparseVector.h
| M	src/shogun/lib/SGVector.cpp
| M	src/shogun/mathematics/Math.h
|  
* commit 74c38fc9a4d86e50ff74cbddf988eb3e3d62a2fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 22:15:02 2012 +0100
| 
|     fix cygwin compile error (ifdef HAVE_ATLAS not HAVE_LAPACK)
| 
| M	src/shogun/lib/SGVector.cpp
|  
* commit a127917e35c03634c2bf4c075185c284c189f1a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 22:12:15 2012 +0100
| 
|     fix java modular compile error
| 
| M	src/interfaces/modular/modshogun_ignores.i
|    
*   commit dc4094d76829f523e16b735d37cb2a5e6d6a17f6
|\  Merge: 3e80aad 966f036
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Nov 25 04:27:53 2012 -0800
| | 
| |     Merge pull request #833 from vigsterkr/so-dev
| |     
| |     Introduction of a new non-convex bundle method risk minimization algorithm
| |   
| * commit 966f03666b68849c4274fa83cde85ec85a1a0659
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sat Nov 24 20:07:24 2012 +0100
| | 
| |     Attempt to fix clean_icp with gcc
| | 
| | M	src/shogun/structure/libbmrm.cpp
| | M	src/shogun/structure/libbmrm.h
| |   
| * commit 5e7143c5230ff583c868a50994cc9a8937c6741b
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sat Nov 24 19:53:01 2012 +0100
| | 
| |     Fix for DualLibQPBMSOSVM of calling NCBM
| | 
| | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| |   
| * commit 294ecbfe9c18216a7a6767b2e42952f74a73545f
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sat Nov 24 19:40:25 2012 +0100
| | 
| |     Final fixes for NCBM
| | 
| | M	src/shogun/structure/libncbm.cpp
| | M	src/shogun/structure/libncbm.h
| |   
| * commit 2300ee1bbef9145920f6b5eda7c7a1c2278be1eb
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Nov 21 15:15:55 2012 +0100
| | 
| |     Fix NCBM call in DualLibQPBMSOSVM
| |     we assume that the risk function is convex
| | 
| | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| |   
| * commit e7035adb3b75a60810e072c0b3d031aeeb39dacf
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Nov 21 14:16:02 2012 +0100
| | 
| |     NCBM API simplification
| | 
| | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | M	src/shogun/structure/libncbm.cpp
| | M	src/shogun/structure/libncbm.h
| |   
| * commit 1aecb471ef6ad1ec46d6ff3376b88e9a31f0ccd0
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Nov 21 12:49:18 2012 +0100
| | 
| |     NCBM performance enhancements
| | 
| | M	src/shogun/structure/libncbm.cpp
| | M	src/shogun/structure/libncbm.h
| |   
| * commit a6005b8410fb2d06c0a29112ba39d9c9636469ef
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Tue Nov 20 23:05:30 2012 +0100
| | 
| |     More optimization for libp3bm
| | 
| | M	src/shogun/structure/libp3bm.cpp
| |   
| * commit ab7b86a5d144b94aaee35d65c82f99e5a2ae2bf6
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Tue Nov 20 21:56:07 2012 +0100
| | 
| |     First attempt to fix clean_icp for p3bm
| | 
| | M	src/shogun/structure/libbmrm.cpp
| | M	src/shogun/structure/libbmrm.h
| | M	src/shogun/structure/libp3bm.cpp
| |   
| * commit d684440930d5049e73e185ae581da05b48eb3001
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Tue Nov 20 12:18:38 2012 +0100
| | 
| |     NCBM (non-convex bundle method) solver
| |     Solves any unconstrainedminimization problem in the form of:
| |     min lambda/2 ||w||^2 + R(w)
| |     where R(w) is add risk funciton of any kind.
| | 
| | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | A	src/shogun/structure/libncbm.cpp
| | A	src/shogun/structure/libncbm.h
| |   
| * commit 5ca9b34da935e4c94913b5c023c9f5bb5d3102f6
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Tue Nov 20 12:12:57 2012 +0100
| | 
| |     Add clean_icp function to BMRM
| |     To remove some code duplication added a new
| |     function clean_icp that does the inactive cp
| |     management for BMRM machines
| | 
| | M	src/shogun/structure/libbmrm.cpp
| | M	src/shogun/structure/libbmrm.h
| | M	src/shogun/structure/libp3bm.cpp
| | M	src/shogun/structure/libppbm.cpp
| |     
* |   commit 3e80aadc4d2d9905c66e6a05c8f80ac8b150e137
|\ \  Merge: c250bb9 2f58c83
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Nov 25 04:26:47 2012 -0800
| | | 
| | |     Merge pull request #835 from vigsterkr/master
| | |     
| | |     Add some BLAS optimized operations to SGVector
| | |    
| * | commit 2f58c83a8d07a7d4f8532d06afc4ae5cbbee2778
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Nov 25 01:08:26 2012 +0100
| | | 
| | |     Fix for SGVector<float32_t>::set_const(...)
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | |    
| * | commit 26cd9815f219203fbdbdf74a6ee71be1f4b0fc50
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Nov 25 01:05:04 2012 +0100
| | | 
| | |     Fix for SGVector::set_const tmpl specialization
| | |     HAVE_LAPACK should be enough, as the function is part of BLAS
| | |     level 1 routine.
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | |    
| * | commit 1d13cb4baa6a742e09995315abfddb11941e4e63
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Sun Nov 25 00:57:01 2012 +0100
| |   
| |       Add some BLAS optimized operations to SGVector
| |   
| |   M	src/shogun/lib/SGVector.cpp
| |   M	src/shogun/lib/SGVector.h
| |     
* |   commit c250bb9beb21523a90d85b480df717972dbd67b8
|\ \  Merge: 49682e5 bfdff65
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/|   Date:   Sat Nov 24 12:45:35 2012 -0800
| |   
| |       Merge pull request #834 from vigsterkr/master
| |       
| |       Template specialization for add_to_dense_vec in DenseFeatures
| |   
| * commit bfdff65504574b8ad8896444fa1f0af744d8ad71
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Sat Nov 24 21:44:07 2012 +0100
|   
|       Template specialization for add_to_dense_vec in DenseFeatures
|   
|   M	src/shogun/features/DenseFeatures.cpp
|  
* commit 49682e5e5390f77f4cd15dc6420845f58fdd004a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 21:58:42 2012 +0100
| 
|     add some more documentation
| 
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
| M	src/shogun/structure/CCSOSVM.h
|  
* commit 2fcfa0d4d3b8f7d90452f29dc6795ff29a7a511c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 17:36:16 2012 +0100
| 
|     fix a number of doxygen errors
| 
| M	src/shogun/classifier/mkl/MKLMulticlassGradient.h
| M	src/shogun/kernel/LinearKernel.h
| M	src/shogun/lib/SGVector.h
| M	src/shogun/lib/memory.h
| M	src/shogun/machine/LinearLatentMachine.h
| M	src/shogun/statistics/LinearTimeMMD.h
|  
* commit 73f922810bc07524be102def2d90022992fa4ea9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 09:54:39 2012 +0100
| 
|     use DynArray instead of std::vector in interface
| 
| M	src/shogun/structure/CCSOSVM.cpp
| M	src/shogun/structure/CCSOSVM.h
|  
* commit 8f218f7be468c4c880fd54ba9cfc52675dcd08e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 22 23:30:17 2012 +0100
| 
|     SG_REALLOC compile fixes for CCSOSVM
| 
| M	src/shogun/classifier/mkl/MKLMulticlassGradient.cpp
| M	src/shogun/structure/CCSOSVM.cpp
|  
* commit 9ffd0ee2fffb290a56d17552f1fea06358f431d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 22 23:02:37 2012 +0100
| 
|     introduce a some more ufuncs like cos/sin to sgvector
| 
| M	src/shogun/lib/SGVector.cpp
| M	src/shogun/lib/SGVector.h
| M	src/shogun/mathematics/Math.h
|    
*   commit bae48d40f98991b2f40f2fa4714ddeb9e75edbe4
|\  Merge: 4c5837e 2a65a1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Nov 22 13:21:49 2012 -0800
| | 
| |     Merge pull request #823 from vigsterkr/so
| |     
| |     Add SO-SVM solver based on Chun-Nam Yu's implementation
| |   
| * commit 2a65a1d247b81f6ca042796d4b7fbaa325098142
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Nov 14 16:40:45 2012 +0100
| | 
| |     Minor fix for MOSEK test
| | 
| | M	src/shogun/structure/CCSOSVM.cpp
| | M	src/shogun/structure/CCSOSVM.h
| |   
| * commit 97db83ff01eb1a5661d12076e922d630d7316ac9
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Nov 14 14:55:16 2012 +0100
| | 
| |     Add SO-SVM solver based on Chun-Nam Yu's implementation
| | 
| | A	src/shogun/structure/CCSOSVM.cpp
| | A	src/shogun/structure/CCSOSVM.h
| |   
* | commit 4c5837ea147a26c2f930182eb361a76d28151efe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Nov 22 19:40:26 2012 +0100
| | 
| |     fix example to use IntVector's randperm_vec function
| | 
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
* | commit cff95d271c250d3df660af2bcbd7ca520a7df76a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Nov 22 19:12:59 2012 +0100
| | 
| |     -add randperm_vec function again but in SGVector
| |     -rename sorted_index to argsort and move it to .cpp file
| | 
| | M	examples/undocumented/python_modular/statistics_hsic.py
| | M	src/shogun/lib/SGVector.cpp
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| |   
* | commit 102799c7cebb15da4ddeefd8d0bee726c0335a72
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Nov 22 01:08:25 2012 +0100
| | 
| |     - move implementation from SGString{,List}.h to .cpp
| |     - move SGVector relevant functions from Math -> SGVector
| | 
| | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | M	examples/undocumented/libshogun/mathematics_lapack.cpp
| | M	examples/undocumented/libshogun/statistics.cpp
| | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | M	src/shogun/evaluation/CrossValidationOutput.h
| | M	src/shogun/features/Subset.h
| | M	src/shogun/lib/Compressor.cpp
| | A	src/shogun/lib/SGString.cpp
| | M	src/shogun/lib/SGString.h
| | A	src/shogun/lib/SGStringList.cpp
| | M	src/shogun/lib/SGStringList.h
| | M	src/shogun/lib/SGVector.cpp
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/Statistics.cpp
| | M	src/shogun/multiclass/RejectionStrategy.h
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/structure/Plif.h
| |   
* | commit 7528d0e12453396aa3d47ad08bdde6446c70af70
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Nov 21 21:05:17 2012 +0100
| | 
| |     put impl. of  sparse vector / matrix functions into .cpp
| | 
| | A	src/shogun/lib/SGSparseMatrix.cpp
| | M	src/shogun/lib/SGSparseMatrix.h
| | A	src/shogun/lib/SGSparseVector.cpp
| | M	src/shogun/lib/SGSparseVector.h
| |   
* | commit 217af0036e06d7413846bba28f51b58c8d4d87c3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Nov 21 18:17:17 2012 +0100
| | 
| |     define index_t in lib/common.h like all other datatypes
| | 
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/common.h
| |   
* | commit dfc7d7d277c1199359df8e2dedb29ae9c98870fe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Nov 21 18:16:58 2012 +0100
| | 
| |     move function definitions to .cpp file
| | 
| | M	src/shogun/lib/SGMatrix.cpp
| | M	src/shogun/lib/SGMatrix.h
| |     
* |   commit 810c9e5b7e6e2faa4ad394729538da030df87904
|\ \  Merge: ba1e9af c7f0a72
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Nov 21 04:43:51 2012 -0800
| | | 
| | |     Merge pull request #832 from vigsterkr/master
| | |     
| | |     Fix SGSparseMatrix ctor to comply with SGMatrix ctor
| | |    
| * | commit c7f0a72ee1b411b5477e8afa4cb02f4adfb89678
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Wed Nov 21 13:39:44 2012 +0100
| |   
| |       Fix SGSparseMatrix ctor to comply with SGMatrix ctor
| |       SGMatrix(num_features, num_vectors) and we want to
| |       follow this in SGSparseMatrix as well to avoid confusions
| |   
| |   M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| |   M	src/shogun/features/SparseFeatures.cpp
| |   M	src/shogun/lib/SGSparseMatrix.h
| |     
* |   commit ba1e9afb7ddc7f8aa2fad57801a8fec4f09471ad
|\ \  Merge: 0a59171 1f02914
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Nov 21 04:21:14 2012 -0800
| | | 
| | |     Merge pull request #831 from vigsterkr/master
| | |     
| | |     Add template specialization for SGVector's arg_max and max
| | |    
| * | commit 1f0291451c9971422f3a010eb187beaf7fecc0c9
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Wed Nov 21 13:05:44 2012 +0100
| |   
| |       Add template specialization for SGVector's arg_max and max
| |       Add float32_t and float64_t template specialization for
| |       arg_max and max functions of SGVector if BLAS is available
| |   
| |   M	src/shogun/lib/SGVector.cpp
| |   
* | commit 0a5917168a713a2053ec5d72088cd001872a615d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Nov 21 08:35:39 2012 +0100
| | 
| |     include lib/memory.h in common.h again since SGVector forward declaration works ok now
| | 
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/base/init.cpp
| | M	src/shogun/lib/SGMatrix.h
| | M	src/shogun/lib/SGNDArray.cpp
| | M	src/shogun/lib/SGReferencedData.cpp
| | M	src/shogun/lib/SGSparseMatrix.h
| | M	src/shogun/lib/SGStringList.h
| | M	src/shogun/lib/common.h
| | M	src/shogun/lib/external/libqp_gsmo.cpp
| | M	src/shogun/lib/external/libqp_splx.cpp
| | M	src/shogun/lib/external/shogun_libsvm.cpp
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	src/shogun/lib/v_array.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | M	src/shogun/ui/SGInterface.cpp
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit af103f3dd6176b993052d42c2f038e38ae74962f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 20 23:00:32 2012 +0100
| | 
| |     simplify example
| | 
| | M	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
| |   
* | commit 63d4f32d8b1543b272444076ded9adda57dba98b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 20 22:27:08 2012 +0100
| | 
| |     remove debug printf's
| | 
| | M	src/shogun/lib/memory.cpp
| |   
* | commit aa689b0541203ff51b2d02706f7b4be129f4bb21
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 20 22:21:34 2012 +0100
| | 
| |     Template based malloc/new etc
| |     
| |     - move implementation code from .h to .cpp for SG datatypes
| |     - no longer by default include lib/memory.h (manual include required)
| |     - turn global functions in SGIO into static member functions
| |     - fix a number of clang warnings
| | 
| | M	src/shogun/classifier/vw/VwParser.cpp
| | M	src/shogun/classifier/vw/vw_label.cpp
| | M	src/shogun/io/SGIO.cpp
| | M	src/shogun/io/SGIO.h
| | M	src/shogun/io/streaming/StreamingAsciiFile.cpp
| | M	src/shogun/lib/SGMatrix.h
| | M	src/shogun/lib/SGNDArray.cpp
| | A	src/shogun/lib/SGReferencedData.cpp
| | M	src/shogun/lib/SGReferencedData.h
| | M	src/shogun/lib/SGSparseMatrix.h
| | M	src/shogun/lib/SGStringList.h
| | M	src/shogun/lib/SGVector.cpp
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/lib/common.h
| | M	src/shogun/lib/external/gpm.cpp
| | M	src/shogun/lib/external/libqp_gsmo.cpp
| | M	src/shogun/lib/external/libqp_splx.cpp
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/multiclass/ScatterSVM.cpp
| | M	src/shogun/multiclass/ScatterSVM.h
| | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| |     
* |   commit 93dba0dd6313f4faf6e2436b653ce1caf16880e1
|\ \  Merge: be857cd 3e114b4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Nov 19 01:38:35 2012 -0800
| | | 
| | |     Merge pull request #830 from thereisnoknife/master
| | |     
| | |     Fix MC-MKL: Update to (Alex's) 0.10.0 patch
| | |    
| * | commit 3e114b4894d2870f759ca394836a0fa4dd4720cf
|/ /  Author: thereisnoknife <thereisnoknife@gmail.com>
| |   Date:   Mon Nov 19 10:16:22 2012 +0100
| |   
| |       Fix MC-MKL: Update to Alex's 0.10.0 patch
| |   
| |   M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| |   M	src/shogun/classifier/mkl/MKLMulticlass.h
| |   M	src/shogun/classifier/mkl/MKLMulticlassGLPK.cpp
| |   M	src/shogun/classifier/mkl/MKLMulticlassGLPK.h
| |   M	src/shogun/classifier/mkl/MKLMulticlassGradient.cpp
| |   M	src/shogun/classifier/mkl/MKLMulticlassGradient.h
| |   M	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.cpp
| |   M	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.h
| |   
* | commit be857cd3501511db807bd2eb926350a25911f6f6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 18 23:08:16 2012 +0100
| | 
| |     append class name to S_THREAD_PARAMS to avoid compiler confusion in
| |     templated malloc
| | 
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/io/streaming/InputParser.h
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/string/WeightedDegreeStringKernel.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| |   
* | commit da636880a8e68f1c48b98224614204bf0ad622e0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 18 20:48:49 2012 +0100
| | 
| |     fix compile error on *bsd
| | 
| | M	src/shogun/io/AsciiFile.cpp
| |   
* | commit afb2445a8423619c03f105b99556d39a6f0f69d2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 18 14:29:44 2012 +0100
| | 
| |     add additional old_size parameter to sg_realloc to enable new[] based resizing
| | 
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | M	src/shogun/features/StringFileFeatures.cpp
| | M	src/shogun/features/streaming/StreamingDotFeatures.cpp
| | M	src/shogun/features/streaming/StreamingSparseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingVwFeatures.cpp
| | M	src/shogun/io/streaming/StreamingAsciiFile.cpp
| | M	src/shogun/lib/SGVector.cpp
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/external/shogun_libsvm.cpp
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	src/shogun/lib/v_array.h
| | M	src/shogun/multiclass/LaRank.cpp
| | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | M	src/shogun/structure/IntronList.cpp
| |   
* | commit 2e5dcdb2ff984a1326f492a3806764609fc96319
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 18 06:56:49 2012 +0100
| | 
| |     remove placement new and inplace constructor calls for SGVector<type>*
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassMultipleOutputLabels.cpp
| | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskCompositeMachine.cpp
| | M	src/shogun/transfer/multitask/MultitaskL12LogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskROCEvaluation.cpp
| | M	src/shogun/transfer/multitask/MultitaskROCEvaluation.h
| | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/TaskGroup.cpp
| | M	src/shogun/transfer/multitask/TaskTree.cpp
| |   
* | commit d9ac31b5bd3e9eef656064c7fc9778c028de4002
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 18 06:56:17 2012 +0100
| | 
| |     mark GMM as broken - serialization is not working due to std::vector not supported in serialization
| | 
| | M	src/shogun/clustering/GMM.cpp
| |   
* | commit 3d23faabc887b3bc2082b8f17144a70ef3a3346b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Nov 17 23:06:35 2012 +0100
| | 
| |     add specialization for SGVector and malloc/calloc/realloc/free
| | 
| | M	src/shogun/lib/memory.cpp
| |   
* | commit dad0687edf4cccbeb69e7e1f03b9095625dc90d3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Nov 17 22:26:48 2012 +0100
| | 
| |     add templated sg_malloc functions
| | 
| | M	src/shogun/lib/memory.h
| |   
* | commit 7d54bf918ffdf177bf549fff1dcd3049f5082f84
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Nov 17 22:26:31 2012 +0100
| | 
| |     next realease will be shogun 2.1.0
| | 
| | M	src/NEWS
| |     
* |   commit c9a8772920c07f9b4cd8e29f664918e097f38bab
|\ \  Merge: aaf320f 70c0282
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Nov 16 10:50:04 2012 -0800
| | | 
| | |     Merge pull request #829 from vigsterkr/latent
| | |     
| | |     Fix bug introduced in #828
| | |    
| * | commit 70c02828b1bbd2a5906c509da0c26abad6e092bb
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Fri Nov 16 19:37:05 2012 +0100
| |   
| |       Fix bug introduced in #828
| |   
| |   M	src/shogun/structure/libppbm.cpp
| |     
* |   commit aaf320fb30757cb91c7c9f12d96d85977f6f7102
|\ \  Merge: f7433d7 f00545b
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Nov 16 09:10:16 2012 -0800
| | | 
| | |     Merge pull request #828 from vigsterkr/latent
| | |     
| | |     Optimize the code within BMRM
| | |    
| * | commit f00545b2b733d8d9461a04c7c8027789c9037602
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Fri Nov 16 18:05:07 2012 +0100
| |   
| |       Optimize the code within BMRM
| |       Use the library provided functions for vector operations,
| |       hence to speed up calculation if optimization libraries are
| |       available
| |   
| |   M	src/shogun/structure/libbmrm.cpp
| |   M	src/shogun/structure/libp3bm.cpp
| |   M	src/shogun/structure/libppbm.cpp
| |     
* |   commit f7433d7df3cd634585b009c7cf831771b35d11b0
|\ \  Merge: 0ea4552 7866d19
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Nov 16 08:59:38 2012 -0800
| | | 
| | |     Merge pull request #827 from vigsterkr/latent
| | |     
| | |     Remove unnecessary headers from bmrm methods
| | |    
| * | commit 7866d19a4183ad68e64c0d58fc40992de9ff967e
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Nov 16 13:20:06 2012 +0100
| | | 
| | |     Remove unnecessary headers from bmrm methods
| | | 
| | | M	src/shogun/structure/libbmrm.cpp
| | | M	src/shogun/structure/libp3bm.cpp
| | | M	src/shogun/structure/libppbm.cpp
| | |    
* | | commit 0ea45525e707fb6ec04aa0dc67c661a8af30c987
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Fri Nov 16 17:55:47 2012 +0100
| |   
| |       introduce SG_INPLACE_MALLOC to avoid inplace constructors
| |   
| |   M	src/shogun/lib/memory.h
| |     
* |   commit 097f9c80f03133b0efac1605772cf3fda8aa014d
|\ \  Merge: 2cd18bc 98b85f6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Nov 15 11:13:36 2012 -0800
| | | 
| | |     Merge pull request #826 from vigsterkr/latent
| | |     
| | |     Fix dual structure solvers to use CMath::sqrt
| | |    
| * | commit 98b85f64fae4a576fc435d9323dd838244a193cc
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Thu Nov 15 20:11:52 2012 +0100
| |   
| |       Fix dual structure solvers to use CMath::sqrt
| |   
| |   M	src/shogun/structure/libbmrm.cpp
| |   M	src/shogun/structure/libp3bm.cpp
| |   M	src/shogun/structure/libppbm.cpp
| |     
* |   commit 2cd18bcf21d491195f7cf4e3e25b07c1ffc9d380
|\ \  Merge: 0cdc7eb 887e00d
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Nov 15 10:55:41 2012 -0800
| | | 
| | |     Merge pull request #825 from vigsterkr/latent
| | |     
| | |     Add load/save functionality for SGVector
| | |    
| * | commit 887e00dcdd953713c8468f45fda0a5b67c4b5a75
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Nov 15 12:32:19 2012 +0100
| | | 
| | |     Remove commented code from SGVector
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | |    
| * | commit df7368cff38c530bc0251c4fab2105ffcac9bd70
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Thu Nov 15 12:30:09 2012 +0100
| |   
| |       Add load/save functionality for SGVector
| |   
| |   M	src/shogun/io/AsciiFile.cpp
| |   M	src/shogun/io/AsciiFile.h
| |   M	src/shogun/io/BinaryFile.cpp
| |   M	src/shogun/io/BinaryFile.h
| |   M	src/shogun/io/File.h
| |   M	src/shogun/io/HDF5File.cpp
| |   M	src/shogun/io/HDF5File.h
| |   M	src/shogun/lib/SGVector.cpp
| |   M	src/shogun/lib/SGVector.h
| |     
* |   commit 0cdc7eb45a4485bbcf3e6095abe2b36d382e4057
|\ \  Merge: 2f3bb62 d2765ab
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Wed Nov 14 07:28:53 2012 -0800
| |   
| |       Merge pull request #824 from ptizoom/perl_121114
| |       
| |       perl_modular: fixed string_from_pdl<char> conversion.
| |   
| * commit d2765ab9ca84724b1d1c90bec7d8fdebc1cfeb26
|/  Author: ptizoom <ptizoom@gmail.com>
|   Date:   Wed Nov 14 15:01:09 2012 +0000
|   
|       perl_modular: fixed string_from_pdl<char> conversion.
|       
|       added SGStringList<type> typemaps in/out interface.
|   
|   M	src/interfaces/perl_modular/swig_typemaps.i
|    
*   commit 2f3bb62895029a9dd7a880861e0e91f317559733
|\  Merge: 742b70c f566eba
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Nov 13 15:10:08 2012 -0800
| | 
| |     Merge pull request #822 from ptizoom/perl_121113
| |     
| |     Perl WIP updates
| |   
| * commit f566ebae3762fc3b63e79b5a87113915eb3fd3e6
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Tue Nov 13 22:07:05 2012 +0000
| | 
| |     tests/perl_modular: increase max_train_time of linear classifiers
| | 
| | M	tests/integration/perl_modular/classifier.pm
| | M	tests/integration/perl_modular/util.pm
| |   
| * commit c3dd767e561ac1d5edab3ebc8db79fedbbe88f5c
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Tue Nov 13 22:06:08 2012 +0000
| | 
| |     perl_modular: fixed matrix SG to PDL conversion.
| |     
| |     added SGMatrix<> typemap for direct use through perl.
| |     messed up with indentation as usual.
| | 
| | M	src/interfaces/perl_modular/pdl.i
| | M	src/interfaces/perl_modular/swig_typemaps.i
| |     
* |   commit 742b70c55a8c87e842a941411d9a8ef540bff012
|\ \  Merge: c7db43f cdc7ed8
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Tue Nov 13 10:52:01 2012 -0800
| |   
| |       Merge pull request #821 from gsomix/python3
| |       
| |       Added support for python3 buffer protocol
| |   
| * commit cdc7ed8cdd73603229d92fb148ccc03892a2fce7
|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|   Date:   Tue Nov 13 22:31:26 2012 +0400
|   
|       added support for python3 buffer protocol
|   
|   M	src/interfaces/python_modular/protocols_helper.i
|    
*   commit c7db43f7c02e3cc0bda36f6b364ac0665c015c99
|\  Merge: e5ccdb3 637ca2c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Nov 11 13:39:43 2012 -0800
| | 
| |     Merge pull request #820 from ptizoom/perl_121111
| |     
| |     more perl WIP updates
| |   
| * commit 637ca2ccb9e2e1597bb076e91718d22d9690f31a
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sun Nov 11 20:56:08 2012 +0000
| | 
| |     tests/perl_modular: attempt  to report test results more rightly.
| | 
| | M	tests/integration/perl_modular/classifier.pm
| | M	tests/integration/perl_modular/test_one.pl
| | M	tests/integration/perl_modular/util.pm
| |   
| * commit dbe7c49b9757f2f551131b2c6ded0ffbf5c3fef6
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sun Nov 11 20:54:46 2012 +0000
| | 
| |     perl_modular: fix IN/OUT transfer with PDL snd SGmatrix/NDarray as memory sequence is transposed from one to the other.
| |     
| |     also moved main algo in pdl.i
| |     done some reformating.
| | 
| | M	src/interfaces/perl_modular/pdl.i
| | M	src/interfaces/perl_modular/swig_typemaps.i
| |   
| * commit 614b3a2e43e8d4fcebbd96b7c6d5fffdbde6a7a4
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sun Nov 11 09:03:30 2012 +0000
| | 
| |     tests/perl_modular: cast strings: true<-> 1  and false<->0.
| |     
| |     also enabled some progress and debugging on the classifier.
| | 
| | M	tests/integration/perl_modular/classifier.pm
| | M	tests/integration/perl_modular/generator.pm
| | M	tests/integration/perl_modular/tester.pl
| |   
| * commit d52f35a9ba1542041b2938b80e5b658563fc0b39
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Thu Nov 8 10:30:55 2012 +0000
| | 
| |     in SWIGPERL : enabled more operators wraps,  and patched complains reserved words "next".
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
| * commit b01f08544fa949a8875fb88f112df6dcfd5529b0
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Thu Nov 8 10:27:13 2012 +0000
| | 
| |     added SWIGPERL hooks to implement CLatentModel and CData.
| |     
| |     CObjectDetector,
| |     example of classifier in examples/undocumented/libshogun/classifier_latent_svm.cpp
| | 
| | A	src/interfaces/modular/abstract_types_extension.i
| | M	src/interfaces/modular/modshogun.i
| |   
| * commit 9b06d31a718b031648382d8280fa57c515b9d0d0
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Thu Nov 8 08:16:56 2012 +0000
| | 
| |     removed a few comments and dead code, compacted SWIGPERL part.
| | 
| | M	src/interfaces/modular/SGBase.i
| |   
| * commit 8c297c44e52c9ed238b9a2563e526af67fbef73c
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sat Nov 3 21:39:47 2012 +0000
| | 
| |     re-enabled vector operator + and += for perl.
| | 
| | M	src/interfaces/modular/Library.i
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
| * commit bd357c75bd17fa87d43f3ca23e60d942ccda216d
|/  Author: ptizoom <ptizoom@gmail.com>
|   Date:   Sat Nov 3 12:22:16 2012 +0000
|   
|       perl_modular:allows to handle in-type map shogun::SGVector<type> being PDL or  SWIGTYPE_p_shogun__SGVectorT.
|       
|       added PDL typemap .. in case.
|   
|   M	src/interfaces/perl_modular/pdl.i
|   M	src/interfaces/perl_modular/swig_typemaps.i
|  
* commit e5ccdb3ed6ba782f5087dd0d3261300f4f3f37e1
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Nov 10 18:48:01 2012 +0400
| 
|     Removed junk debug print in LPP
| 
| M	src/shogun/converter/LocalityPreservingProjections.cpp
|  
* commit 66685fe89f1cf1a6dd4818ffab05ce28cf6937c1
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Nov 10 18:46:09 2012 +0400
| 
|     Fixed math issues in LPP
| 
| M	src/shogun/converter/LocalityPreservingProjections.cpp
|    
*   commit 8d37da96ad3fc4d137f1836997f8e05141050390
|\  Merge: 754d81b 620e064
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Nov 8 15:32:12 2012 -0800
| | 
| |     Merge pull request #819 from vigsterkr/latent
| |     
| |     Add LinearARDKernel and GaussianARDKernel to modular interface
| |   
| * commit 620e064c7ae8b153bf2ace57261304a78e5af423
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Fri Nov 9 00:29:03 2012 +0100
|   
|       Add LinearARDKernel and GaussianARDKernel to modular interface
|   
|   M	src/interfaces/modular/Kernel.i
|   M	src/interfaces/modular/Kernel_includes.i
|    
*   commit 754d81b0f0cd656afdf15346a33b97c9bb3cbe02
|\  Merge: a325ca7 67681ed
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Nov 8 12:05:19 2012 -0800
| | 
| |     Merge pull request #818 from cwidmer/master
| |     
| |     fixed typo
| |   
| * commit 67681eddb3f63bfe9aac09bb60dc7af5ec66a5bd
| | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | Date:   Thu Nov 8 19:24:05 2012 +0100
| | 
| |     fixed typo
| | 
| | M	examples/undocumented/python_modular/serialization_string_kernels_modular.py
| |   
* | commit a325ca7a00a100d740afcbc0bc5d0d3a6e2bc7fb
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Fri Nov 9 00:04:56 2012 +0400
|   
|       Attempted to fix strings serialization process
|   
|   M	src/shogun/features/StringFeatures.cpp
|   M	src/shogun/features/StringFeatures.h
|   M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.cpp
|    
*   commit ad7a0e221709f2c56b58271d1a9a81ec4f123a82
|\  Merge: 9e87cd5 cfe0958
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Nov 8 09:34:02 2012 -0800
| | 
| |     Merge pull request #817 from cwidmer/master
| |     
| |     added serialization example
| |   
| * commit cfe095838bd9ebcef60777a5b06ad48779883232
| | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | Date:   Thu Nov 8 18:15:40 2012 +0100
| | 
| |     added serialization example for combined kernel consisting of spectrum and wdk kernels
| | 
| | A	examples/undocumented/python_modular/serialization_string_kernels_modular.py
| |   
| * commit 5195b7fc53f03e686c60f04eef08a0658655bab5
|/  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
|   Date:   Thu Nov 8 14:27:58 2012 +0100
|   
|       polished simple serialization example
|   
|   M	examples/undocumented/python_modular/serialization_svmlight_modular.py
|    
*   commit 9e87cd569db7c8a162b1960798b5c37a41741201
|\  Merge: ce7eafe a4bc1c9
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Nov 8 08:57:31 2012 -0800
| | 
| |     Merge pull request #816 from vigsterkr/latent
| |     
| |     Fix StreamingFeatures
| |   
| * commit a4bc1c9daa46b7fb4cfd662f1a0dfbb69db6747b
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Thu Nov 8 17:02:54 2012 +0100
| | 
| |     Fix StreamingFeatures
| |     
| |     	* StreamingDotFeatures, StreamingFeatures:
| |     	Remove empty functions and constructors
| |     	* StreamingSparseFeatures:
| |     	removing working_file variable that shadows the same variable in
| |     	StreamingFeatures
| |     	increase the reference of the working_file in ctor
| |     	define the dtor virtual
| | 
| | M	src/shogun/features/streaming/StreamingDotFeatures.cpp
| | M	src/shogun/features/streaming/StreamingDotFeatures.h
| | M	src/shogun/features/streaming/StreamingFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.h
| | M	src/shogun/features/streaming/StreamingSparseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingSparseFeatures.h
| |   
* | commit ce7eafee615b565cdbdd091901a6d85f26525b4e
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Thu Nov 8 20:56:39 2012 +0400
|   
|       Patched multiclass libsvm to support 2 classes
|   
|   M	src/shogun/multiclass/MulticlassLibSVM.cpp
|  
* commit ca4768d315ad2a60aba367ff3b300a44e6f56481
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 8 02:03:14 2012 +0400
| 
|     Reverted SGString transformation
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
| M	src/interfaces/java_modular/swig_typemaps.i
| M	src/interfaces/lua_modular/swig_typemaps.i
| M	src/interfaces/matlab_static/MatlabInterface.cpp
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/python_modular/swig_typemaps.i
| M	src/interfaces/python_static/PythonInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/File.cpp
| M	src/shogun/kernel/string/SpectrumRBFKernel.cpp
| M	src/shogun/lib/SGString.h
| M	src/shogun/lib/SGStringList.h
| M	src/shogun/preprocessor/DecompressString.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| M	src/shogun/ui/GUIFeatures.cpp
| M	src/shogun/ui/SGInterface.cpp
|    
*   commit ffeff459048e75225146f847ac6b4d2d7fc6739c
|\  Merge: 0b17728 118d15b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Nov 6 11:51:54 2012 -0800
| | 
| |     Merge pull request #814 from vigsterkr/latent
| |     
| |     Fix libshogun.dylib compilation on OS X
| |   
| * commit 118d15bc1c7d49311d54c53304dd3014b705b970
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Tue Nov 6 19:39:00 2012 +0100
|   
|       Fix libshogun.dylib compilation on OS X
|       Set current version and compatibility version for libshogun
|   
|   M	src/configure
|    
*   commit 0b17728376c9d35e11a8b580492a77864c7c08e1
|\  Merge: 9ff681f f1cadaf
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Nov 5 03:16:17 2012 -0800
| | 
| |     Merge pull request #813 from vigsterkr/utest
| |     
| |     Fix LatentSVM unit testing
| |   
| * commit f1cadaf21a96a4b0773ea8463245741efd87c920
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Mon Nov 5 12:14:35 2012 +0100
|   
|       Fix LatentSVM unit testing
|   
|   M	tests/unit/latent/LatentSVM_unittest.cc
|   M	tests/unit/latent/MockLatentModel.h
|  
* commit 9ff681f049bc462584f6e5507a9069c683d31f2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 2 08:03:19 2012 +0100
| 
|     Fix osx compilation for certain version - thanks to ktsianos for the fix
| 
| M	src/shogun/io/SGIO.h
|  
* commit 5c03620519cbc21b6c9009ebbb0c1ea5beb524d2
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Nov 2 00:18:27 2012 +0400
| 
|     Removed junk debug print
| 
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
|  
* commit a55b25e0b87ae2bbc5383a232f26d63ce2fad2ff
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 1 23:03:35 2012 +0400
| 
|     Fix for 3-class training of multiclass libsvm
| 
| M	src/NEWS
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
|  
* commit 276a2ff8a85cadb935f5740603d45b19ef2d116d
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 1 01:57:28 2012 +0400
| 
|     Made multiclass logistic regression python example safe when shogun is compiled without eigen3
| 
| M	examples/undocumented/python_modular/classifier_multiclasslogisticregression_modular.py
|  
* commit 5fa8df48872f9a7bc551066f21afac5b49a02c03
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 1 00:34:51 2012 +0400
| 
|     Updated reference to submodule tutorial
| 
| M	doc/tutorial
|  
* commit 3222c06cb2140c6540a1ce9b9d3fd8245bb23a79
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 1 00:32:21 2012 +0400
| 
|     Added python example of multiclass logistic regression
| 
| A	examples/undocumented/python_modular/classifier_multiclasslogisticregression_modular.py
|  
* commit 1526e974a1f3e5dcc723e3fc4990f31d6f5218ca
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Nov 1 00:31:02 2012 +0400
| 
|     Introduced multiclass logistic regression
| 
| M	src/NEWS
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| A	src/shogun/lib/slep/slep_mc_plain_lr.cpp
| A	src/shogun/lib/slep/slep_mc_plain_lr.h
| A	src/shogun/multiclass/MulticlassLogisticRegression.cpp
| A	src/shogun/multiclass/MulticlassLogisticRegression.h
|  
* commit 7c1fcabf7d55320f267f3e478948b96e9c49e6da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 30 22:48:33 2012 +0100
| 
|     fix potential compile error on systems where java is not detected correctly
| 
| M	src/configure
|    
*   commit 363cb876f9eb6f321a85181a02d51a6fc9726d81
|\  Merge: 528ccfd ffbecc3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Oct 30 11:17:25 2012 -0700
| | 
| |     Merge pull request #812 from ptizoom/perl_121030
| |     
| |     cleaned most of dead code in pdl.I and perl_modular/swig_typemap.i
| |   
| * commit ffbecc3722d09b6d226a0f848608af6749f26836
|/  Author: ptizoom <ptizoom@gmail.com>
|   Date:   Tue Oct 30 17:49:32 2012 +0000
|   
|       cleaned most of dead code in pdl.I and perl_modular/swig_typemap.i
|   
|   M	src/interfaces/perl_modular/pdl.i
|   M	src/interfaces/perl_modular/swig_typemaps.i
|    
*   commit 528ccfd8a5cfa5716c2f5504c800a3bb6947e86e
|\  Merge: 91ea878 77332c1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Oct 29 05:09:31 2012 -0700
| | 
| |     Merge pull request #811 from vigsterkr/master
| |     
| |     Minor fixes in LatentSVM
| |   
| * commit 77332c1e555ae1940fddc5fefe1dd4e40acc1d24
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Mon Oct 29 12:12:34 2012 +0100
|   
|       Minor fixes in LatentSVM
|   
|   M	src/shogun/latent/LatentSVM.cpp
|    
*   commit 91ea878b3d2069ff3849d339cf694782b87f609a
|\  Merge: 1e93f0d 801071c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 29 04:04:26 2012 -0700
| | 
| |     Merge pull request #810 from karlnapf/master
| |     
| |     mention bugfix in NEWS
| |   
| * commit 801071ca14009663a081189d3fe07e268686fb52
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 29 11:03:53 2012 +0000
| | 
| |     mentioned last bugfix
| | 
| | M	src/NEWS
| |     
* |   commit 1e93f0dd1c1b7b7b475d99edc7c746549ab81e61
|\ \  Merge: 915af5c debc3a4
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Oct 29 04:01:02 2012 -0700
| |   
| |       Merge pull request #809 from karlnapf/master
| |       
| |       fixes a bug
| |   
| * commit debc3a468b56711c160e7658378134a55c8475b6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 29 10:56:10 2012 +0000
| | 
| |     replaced print by debug message
| | 
| | M	src/shogun/kernel/string/CommWordStringKernel.cpp
| |   
| * commit 30d6b8ad43379f6919f361c1e9b7dc320d1b9cdc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 29 10:56:02 2012 +0000
| | 
| |     bugfix that allows using string features in cross-validation from store_model_features(). This method did not copy all attributed properly.
| | 
| | M	src/shogun/features/StringFeatures.cpp
| |   
* | commit 915af5cda5ab6c46a5cddb04fa993ff4b9651cc0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Oct 28 23:50:06 2012 +0100
| | 
| |     add make tutorial target
| | 
| | M	doc/tutorial
| | M	src/Makefile
| |     
* |   commit 3c4a075bdb879920da2b783c0ed527ed3fe0f42d
|\ \  Merge: b936a24 cd3115e
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Oct 28 14:05:34 2012 -0700
| |   
| |       Merge pull request #808 from karlnapf/master
| |       
| |       fix for a memory error
| |   
| * commit cd3115e194f07b7b46b733760bbe3af0e57388df
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Oct 28 21:01:37 2012 +0000
| | 
| |     fixed a memory error due to uninitialized array pointers
| | 
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| |     
* |   commit b936a24f6bd0115539c1f3f78a2816dd4a702390
|\ \  Merge: 1629d82 6df1a79
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Oct 28 12:37:06 2012 -0700
| |   
| |       Merge pull request #807 from karlnapf/master
| |       
| |       added obtain_from_generic to GaussianKernel
| |   
| * commit 6df1a796ca8b988c2c0b53e8ad1e0f49254a5fae
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Oct 28 19:34:20 2012 +0000
| | 
| |     added obtain_from_generic method to allow casting from CKernel in python_modular
| | 
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.h
| |     
* |   commit 1629d82d7606524f9e9d731948a6e83192fcdce4
|\ \  Merge: bbc4a3b 12265ad
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Oct 28 10:01:54 2012 -0700
| |   
| |       Merge pull request #806 from karlnapf/master
| |       
| |       added new perform_method, which
| |   
| * commit 12265ade45b8d0570fff1909339075c8da287113
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sun Oct 28 16:59:36 2012 +0000
|   
|       added new perform_test method which makes testing more efficient in certain cases and is a wrapper otherwise
|   
|   M	src/shogun/statistics/LinearTimeMMD.cpp
|   M	src/shogun/statistics/LinearTimeMMD.h
|   M	src/shogun/statistics/QuadraticTimeMMD.cpp
|   M	src/shogun/statistics/TestStatistic.cpp
|   M	src/shogun/statistics/TestStatistic.h
|    
*   commit bbc4a3bbb43300da71317920aee32285de7332ce
|\  Merge: 6b6d83b 0d5f851
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Oct 27 13:07:04 2012 -0700
| | 
| |     Merge pull request #805 from ptizoom/perl_121026
| |     
| |     Add perl regression tests.
| |   
| * commit 0d5f851a5ec2cb23f287a17140fb2e5bfcd05033
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sat Oct 27 13:20:15 2012 +0100
| | 
| |     forced local shogun library and module path in tests/integration/perl_modular.
| | 
| | M	tests/integration/perl_modular/test_one.pl
| | M	tests/integration/perl_modular/tester.pl
| |   
| * commit cc110627342e23060b5c0989c0b592a893743ad0
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sat Oct 27 12:28:27 2012 +0100
| | 
| |     "$EXT_LIB" is without a "." by convention, but EXT_LIB_SWIG_PERL_MODULAR shall be.
| | 
| | M	src/configure
| |   
| * commit 865953b1072623b021efe809ee32eae235157669
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Sat Oct 27 12:26:40 2012 +0100
| | 
| |     reverted a few over zealous and unnecessary changes.
| | 
| | M	.gitignore
| | M	src/configure
| |   
| * commit 83f44a0a814477800c7530410ae919bfb18ba959
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Fri Oct 26 17:49:32 2012 +0100
| | 
| |     added perl_modular tests for intergration.
| |     removed CONFIGPATH extra '/'
| |     run-testsuite-perl_modular of run-testsuite target.
| |     configure: added check_perldl, check_perl, _pldir
| | 
| | M	src/Makefile.template
| | M	src/configure
| | M	tests/integration/README
| | A	tests/integration/perl_modular/README
| | A	tests/integration/perl_modular/classifier.pm
| | A	tests/integration/perl_modular/clustering.pm
| | A	tests/integration/perl_modular/distance.pm
| | A	tests/integration/perl_modular/distribution.pm
| | A	tests/integration/perl_modular/generator.pm
| | A	tests/integration/perl_modular/kernel.pm
| | A	tests/integration/perl_modular/preprocessor.pm
| | A	tests/integration/perl_modular/regression.pm
| | A	tests/integration/perl_modular/test_all.sh
| | A	tests/integration/perl_modular/test_one.pl
| | A	tests/integration/perl_modular/test_svm_kernel_multiple.pl
| | A	tests/integration/perl_modular/tester.pl
| | A	tests/integration/perl_modular/util.pm
| |   
| * commit 1dad2d6e7d35a6f2c2ad34277911a509c00783a6
| | Author: ptizoom <ptizoom@gmail.com>
| | Date:   Fri Oct 26 15:05:11 2012 +0100
| | 
| |     sub-modules,  perl_module and other intermediary working file ignored in git
| | 
| | M	.gitignore
| |   
* | commit 6b6d83b7662087a5b58652970a13f2da84d6939f
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Sat Oct 27 16:19:57 2012 +0400
|   
|       Marked methods in director structured model as virtual
|   
|   M	src/shogun/structure/DirectorStructuredModel.h
|  
* commit e8ab0748b4d406db0b3485c6f2f549e1818115e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 26 03:47:02 2012 +0200
| 
|     include variable assignment in fix
| 
| M	src/shogun/statistics/LinearTimeMMD.cpp
|  
* commit 9cd950f279afa2c7e0825fb23fd03f5ee2968acc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 26 03:13:29 2012 +0200
| 
|     fix linear time mmd compile error when lapack is not available
| 
| M	src/shogun/statistics/LinearTimeMMD.cpp
|    
*   commit deda169634a3f9fe5f8a5af1015d50b2ca8a5354
|\  Merge: 5f36e99 4e01cd0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Oct 25 16:54:26 2012 -0700
| | 
| |     Merge pull request #804 from vigsterkr/master
| |     
| |     Use SG_CALLOC instead of calloc
| |   
| * commit 4e01cd072e2b63424b9503fc66fdd664e3c701ed
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Thu Oct 25 23:21:21 2012 +0200
|   
|       Use SG_CALLOC instead of calloc Just to fix some of the static analyzer reports
|   
|   M	src/shogun/kernel/string/LocalAlignmentStringKernel.cpp
|  
* commit 5f36e9951f1778015706b6c04b2d4a41da4abd78
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Fri Oct 26 00:17:16 2012 +0400
| 
|     Removed wrong free of sgvector field of LinearKernel
| 
| M	src/shogun/kernel/LinearKernel.cpp
|  
* commit 046a89ccfd9238262add6a1cfe5cdb43b458f3a0
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Oct 25 23:59:53 2012 +0400
| 
|     Fixed ifdefs in SGBase to avoid failures with all but perl interfaces
| 
| M	src/interfaces/modular/SGBase.i
|  
* commit 21d55d24675b99b72c1acd88a161ba522e2e2e49
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Oct 25 23:29:54 2012 +0400
| 
|     Made LinearKernels clear_normal method implementation corrrrrect
| 
| M	src/shogun/kernel/LinearKernel.h
|    
*   commit bfc244c89b7706f1eb9110db60b0d3e211561f5d
|\  Merge: 76cdc38 b292457
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Oct 25 12:22:10 2012 -0700
| | 
| |     Merge pull request #801 from vigsterkr/master
| |     
| |     Refactor caching in latent solvers
| |   
| * commit b292457361145a544554c23443a7525870fb3dad
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Thu Oct 25 19:43:41 2012 +0200
| | 
| |     Add Latent to python modular interface
| | 
| | M	src/Makefile.template
| |   
| * commit 8576d72dff5aec19362a60ae5f4951d95bbe0351
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Thu Oct 25 15:05:26 2012 +0200
| | 
| |     Refactor caching in latent solvers
| |     And add a director class for LatentModel
| | 
| | M	src/interfaces/modular/Latent.i
| | M	src/interfaces/modular/Latent_includes.i
| | A	src/shogun/latent/DirectorLatentModel.cpp
| | A	src/shogun/latent/DirectorLatentModel.h
| | M	src/shogun/latent/LatentModel.cpp
| | M	src/shogun/latent/LatentModel.h
| | M	src/shogun/latent/LatentSVM.cpp
| | M	src/shogun/machine/LinearLatentMachine.cpp
| | M	src/shogun/machine/LinearLatentMachine.h
| |   
* | commit 76cdc38850f7d4408b6316c9d8912a9b72cd01c4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Oct 25 21:56:57 2012 +0400
| | 
| |     Restored clear_normal method of LinearKernel
| | 
| | M	src/shogun/kernel/LinearKernel.h
| |     
* |   commit b4c1f7b1a79bc8314d484a673ed4af2fa6c6690a
|\ \  Merge: 4058389 f6e29a1
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Oct 25 10:48:10 2012 -0700
| | | 
| | |     Merge pull request #803 from karlnapf/master
| | |     
| | |     quickfix for failing streaming examples
| | |    
| * | commit f6e29a1b77d9d091f009bc112907d7f9686c1735
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Oct 25 18:47:33 2012 +0100
| | | 
| | |     commented out examples since they fail (will work on that soon)
| | | 
| | | M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| | | M	examples/undocumented/python_modular/streaming_vw_modular.py
| | |      
* | |   commit 405838948668fdd4ee5f12504e7cee61b97179a5
|\ \ \  Merge: a0b3221 508d319
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Oct 25 10:24:47 2012 -0700
| | |   
| | |       Merge pull request #802 from karlnapf/master
| | |       
| | |       graphical python example for (yet semi-)interactive GP regression
| | |    
| * | commit 508d31983a1fb1e5f806efdd4d149cde1061b769
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Oct 25 18:15:12 2012 +0100
| | | 
| | |     initial add of GP regression interactive demo
| | | 
| | | A	examples/undocumented/python_modular/graphical/interactive_gp_demo.py
| | |    
| * | commit e48d0952434b26bf29018da2c69fcf525f847952
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Oct 25 18:14:11 2012 +0100
| | | 
| | |     applied api change
| | | 
| | | M	examples/undocumented/python_modular/graphical/util.py
| | |    
| * | commit d898f4b141d86c9506a5d4411167b901768d15e3
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Oct 25 18:14:03 2012 +0100
| |   
| |       applied api change
| |   
| |   M	examples/undocumented/python_modular/graphical/interactive_svr_demo.py
| |   
* | commit a0b32218bcb2219d1a61af5e3486567704cb3ae8
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Oct 25 16:10:30 2012 +0200
|   
|       make inline virtual or virtual inline functions all just virtual
|   
|   M	src/shogun/base/DynArray.h
|   M	src/shogun/base/Parameter.h
|   M	src/shogun/base/ParameterMap.h
|   M	src/shogun/classifier/AveragedPerceptron.h
|   M	src/shogun/classifier/LDA.h
|   M	src/shogun/classifier/LPBoost.h
|   M	src/shogun/classifier/LPM.h
|   M	src/shogun/classifier/Perceptron.h
|   M	src/shogun/classifier/PluginEstimate.h
|   M	src/shogun/classifier/SubGradientLPM.h
|   M	src/shogun/classifier/mkl/MKL.h
|   M	src/shogun/classifier/mkl/MKLClassification.h
|   M	src/shogun/classifier/mkl/MKLMulticlass.h
|   M	src/shogun/classifier/mkl/MKLMulticlassGLPK.h
|   M	src/shogun/classifier/mkl/MKLMulticlassGradient.h
|   M	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.h
|   M	src/shogun/classifier/mkl/MKLOneClass.h
|   M	src/shogun/classifier/svm/CPLEXSVM.h
|   M	src/shogun/classifier/svm/GNPPLib.h
|   M	src/shogun/classifier/svm/GNPPSVM.h
|   M	src/shogun/classifier/svm/GPBTSVM.h
|   M	src/shogun/classifier/svm/LibLinear.h
|   M	src/shogun/classifier/svm/LibSVM.h
|   M	src/shogun/classifier/svm/LibSVMOneClass.h
|   M	src/shogun/classifier/svm/MPDSVM.h
|   M	src/shogun/classifier/svm/NewtonSVM.h
|   M	src/shogun/classifier/svm/OnlineLibLinear.h
|   M	src/shogun/classifier/svm/OnlineSVMSGD.h
|   M	src/shogun/classifier/svm/QPBSVMLib.h
|   M	src/shogun/classifier/svm/SGDQN.h
|   M	src/shogun/classifier/svm/SVM.h
|   M	src/shogun/classifier/svm/SVMLight.h
|   M	src/shogun/classifier/svm/SVMLightOneClass.h
|   M	src/shogun/classifier/svm/SVMLin.h
|   M	src/shogun/classifier/svm/SVMOcas.h
|   M	src/shogun/classifier/svm/SVMSGD.h
|   M	src/shogun/classifier/svm/SubGradientSVM.h
|   M	src/shogun/classifier/svm/WDSVMOcas.h
|   M	src/shogun/clustering/GMM.h
|   M	src/shogun/clustering/Hierarchical.h
|   M	src/shogun/clustering/KMeans.h
|   M	src/shogun/distance/AttenuatedEuclideanDistance.h
|   M	src/shogun/distance/CustomDistance.h
|   A	src/shogun/distance/DenseDistance.cpp
|   M	src/shogun/distance/DenseDistance.h
|   M	src/shogun/distance/DirectorDistance.h
|   M	src/shogun/distance/Distance.h
|   M	src/shogun/distance/EuclideanDistance.h
|   M	src/shogun/distance/KernelDistance.h
|   M	src/shogun/distance/MahalanobisDistance.h
|   M	src/shogun/distance/RealDistance.h
|   M	src/shogun/distance/SparseDistance.h
|   M	src/shogun/distance/SparseEuclideanDistance.h
|   M	src/shogun/distance/StringDistance.h
|   M	src/shogun/distributions/Distribution.h
|   M	src/shogun/distributions/Gaussian.h
|   M	src/shogun/distributions/HMM.h
|   M	src/shogun/distributions/Histogram.h
|   M	src/shogun/distributions/LinearHMM.h
|   M	src/shogun/distributions/PositionalPWM.h
|   M	src/shogun/evaluation/ContingencyTableEvaluation.h
|   M	src/shogun/evaluation/CrossValidation.h
|   M	src/shogun/evaluation/CrossValidationSplitting.h
|   M	src/shogun/evaluation/DirectorContingencyTableEvaluation.h
|   M	src/shogun/evaluation/GradientCriterion.h
|   M	src/shogun/evaluation/GradientResult.h
|   M	src/shogun/evaluation/MeanAbsoluteError.h
|   M	src/shogun/evaluation/MeanSquaredError.h
|   M	src/shogun/evaluation/MeanSquaredLogError.h
|   M	src/shogun/evaluation/MulticlassAccuracy.h
|   M	src/shogun/evaluation/PRCEvaluation.h
|   M	src/shogun/evaluation/ROCEvaluation.h
|   M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
|   M	src/shogun/features/Alphabet.h
|   M	src/shogun/features/AttributeFeatures.h
|   M	src/shogun/features/CombinedDotFeatures.h
|   M	src/shogun/features/CombinedFeatures.h
|   M	src/shogun/features/DataGenerator.h
|   M	src/shogun/features/DenseFeatures.h
|   M	src/shogun/features/DirectorDotFeatures.h
|   M	src/shogun/features/DummyFeatures.h
|   M	src/shogun/features/ExplicitSpecFeatures.h
|   M	src/shogun/features/FKFeatures.h
|   M	src/shogun/features/HashedWDFeatures.h
|   M	src/shogun/features/HashedWDFeaturesTransposed.h
|   M	src/shogun/features/ImplicitWeightedSpecFeatures.h
|   M	src/shogun/features/PolyFeatures.h
|   M	src/shogun/features/RealFileFeatures.h
|   M	src/shogun/features/SparseFeatures.h
|   M	src/shogun/features/SparsePolyFeatures.h
|   M	src/shogun/features/StringFeatures.h
|   M	src/shogun/features/SubsetStack.h
|   M	src/shogun/features/TOPFeatures.h
|   M	src/shogun/features/WDFeatures.h
|   M	src/shogun/features/streaming/StreamingDenseFeatures.h
|   M	src/shogun/features/streaming/StreamingSparseFeatures.h
|   M	src/shogun/features/streaming/StreamingStringFeatures.h
|   M	src/shogun/features/streaming/StreamingVwFeatures.h
|   M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
|   M	src/shogun/io/AsciiFile.h
|   M	src/shogun/io/BinaryFile.h
|   M	src/shogun/io/BinaryStream.h
|   M	src/shogun/io/File.h
|   M	src/shogun/io/HDF5File.h
|   M	src/shogun/io/MemoryMappedFile.h
|   M	src/shogun/io/SerializableAsciiFile.h
|   M	src/shogun/io/SerializableAsciiReader00.h
|   M	src/shogun/io/SerializableHdf5File.h
|   M	src/shogun/io/SerializableHdf5Reader00.h
|   M	src/shogun/io/SerializableJsonFile.h
|   M	src/shogun/io/SerializableJsonReader00.h
|   M	src/shogun/io/SerializableXmlFile.h
|   M	src/shogun/io/SerializableXmlReader00.h
|   M	src/shogun/io/SimpleFile.h
|   M	src/shogun/io/streaming/ParseBuffer.h
|   M	src/shogun/io/streaming/StreamingAsciiFile.h
|   M	src/shogun/io/streaming/StreamingFile.h
|   M	src/shogun/io/streaming/StreamingFileFromDenseFeatures.h
|   M	src/shogun/io/streaming/StreamingFileFromFeatures.h
|   M	src/shogun/io/streaming/StreamingFileFromSparseFeatures.h
|   M	src/shogun/io/streaming/StreamingFileFromStringFeatures.h
|   M	src/shogun/io/streaming/StreamingVwCacheFile.h
|   M	src/shogun/io/streaming/StreamingVwFile.h
|   M	src/shogun/kernel/ANOVAKernel.h
|   M	src/shogun/kernel/AUCKernel.h
|   M	src/shogun/kernel/BesselKernel.h
|   M	src/shogun/kernel/CauchyKernel.h
|   M	src/shogun/kernel/Chi2Kernel.h
|   M	src/shogun/kernel/CircularKernel.h
|   M	src/shogun/kernel/CombinedKernel.h
|   M	src/shogun/kernel/ConstKernel.h
|   M	src/shogun/kernel/CustomKernel.h
|   M	src/shogun/kernel/DiagKernel.h
|   M	src/shogun/kernel/DirectorKernel.h
|   M	src/shogun/kernel/DistanceKernel.h
|   M	src/shogun/kernel/DotKernel.h
|   M	src/shogun/kernel/ExponentialKernel.h
|   M	src/shogun/kernel/GaussianKernel.h
|   M	src/shogun/kernel/InverseMultiQuadricKernel.h
|   M	src/shogun/kernel/Kernel.h
|   M	src/shogun/kernel/LinearARDKernel.h
|   M	src/shogun/kernel/LogKernel.h
|   M	src/shogun/kernel/MultiquadricKernel.h
|   M	src/shogun/kernel/PowerKernel.h
|   M	src/shogun/kernel/ProductKernel.h
|   M	src/shogun/kernel/RationalQuadraticKernel.h
|   M	src/shogun/kernel/SigmoidKernel.h
|   M	src/shogun/kernel/SparseKernel.h
|   M	src/shogun/kernel/SphericalKernel.h
|   M	src/shogun/kernel/TStudentKernel.h
|   M	src/shogun/kernel/TensorProductPairKernel.h
|   M	src/shogun/kernel/WaveKernel.h
|   M	src/shogun/kernel/WeightedDegreeRBFKernel.h
|   M	src/shogun/kernel/normalizer/AvgDiagKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/DiceKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/FirstElementKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/IdentityKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/RidgeKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/ScatterKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/SqrtDiagKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/TanimotoKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/VarianceKernelNormalizer.h
|   M	src/shogun/kernel/normalizer/ZeroMeanCenterKernelNormalizer.h
|   M	src/shogun/kernel/string/CommUlongStringKernel.h
|   M	src/shogun/kernel/string/CommWordStringKernel.h
|   M	src/shogun/kernel/string/RegulatoryModulesStringKernel.h
|   M	src/shogun/kernel/string/StringKernel.h
|   M	src/shogun/kernel/string/WeightedCommWordStringKernel.h
|   M	src/shogun/kernel/string/WeightedDegreePositionStringKernel.h
|   M	src/shogun/kernel/string/WeightedDegreeStringKernel.h
|   M	src/shogun/labels/BinaryLabels.h
|   M	src/shogun/labels/MulticlassLabels.h
|   M	src/shogun/labels/RegressionLabels.h
|   M	src/shogun/lib/BitString.h
|   M	src/shogun/lib/Cache.h
|   M	src/shogun/lib/Compressor.h
|   M	src/shogun/lib/DynamicArray.h
|   M	src/shogun/lib/DynamicObjectArray.h
|   M	src/shogun/lib/FibonacciHeap.h
|   M	src/shogun/lib/Hash.h
|   M	src/shogun/lib/List.h
|   M	src/shogun/lib/Signal.h
|   M	src/shogun/lib/Time.h
|   M	src/shogun/lib/Trie.h
|   M	src/shogun/lib/external/gpdtsolve.h
|   M	src/shogun/machine/DirectorKernelMachine.h
|   M	src/shogun/machine/DirectorLinearMachine.h
|   M	src/shogun/machine/KernelStructuredOutputMachine.h
|   M	src/shogun/machine/LinearMachine.h
|   M	src/shogun/machine/LinearStructuredOutputMachine.h
|   M	src/shogun/machine/OnlineLinearMachine.h
|   M	src/shogun/mathematics/Cplex.h
|   M	src/shogun/mathematics/Math.h
|   M	src/shogun/mathematics/Mosek.h
|   M	src/shogun/mathematics/Statistics.h
|   M	src/shogun/modelselection/GradientModelSelection.h
|   M	src/shogun/modelselection/GridSearchModelSelection.h
|   M	src/shogun/modelselection/ModelSelectionParameters.h
|   M	src/shogun/modelselection/ParameterCombination.h
|   M	src/shogun/modelselection/RandomSearchModelSelection.h
|   M	src/shogun/multiclass/GMNPLib.h
|   M	src/shogun/multiclass/GMNPSVM.h
|   M	src/shogun/multiclass/GaussianNaiveBayes.h
|   M	src/shogun/multiclass/KNN.h
|   M	src/shogun/multiclass/LaRank.h
|   M	src/shogun/multiclass/MulticlassLibSVM.h
|   M	src/shogun/multiclass/QDA.h
|   M	src/shogun/multiclass/ScatterSVM.h
|   M	src/shogun/optimization/liblinear/tron.h
|   M	src/shogun/preprocessor/DecompressString.h
|   M	src/shogun/preprocessor/KernelPCA.h
|   M	src/shogun/preprocessor/LogPlusOne.h
|   M	src/shogun/preprocessor/NormOne.h
|   M	src/shogun/preprocessor/PCA.h
|   M	src/shogun/preprocessor/PNorm.h
|   M	src/shogun/preprocessor/PruneVarSubMean.h
|   M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
|   M	src/shogun/preprocessor/SortUlongString.h
|   M	src/shogun/preprocessor/SortWordString.h
|   M	src/shogun/preprocessor/SparsePreprocessor.h
|   M	src/shogun/preprocessor/StringPreprocessor.h
|   M	src/shogun/preprocessor/SumOne.h
|   M	src/shogun/regression/GaussianProcessRegression.h
|   M	src/shogun/regression/KernelRidgeRegression.h
|   M	src/shogun/regression/LeastAngleRegression.h
|   M	src/shogun/regression/LeastSquaresRegression.h
|   M	src/shogun/regression/LinearRidgeRegression.h
|   M	src/shogun/regression/gp/ExactInferenceMethod.h
|   M	src/shogun/regression/gp/FITCInferenceMethod.h
|   M	src/shogun/regression/gp/GaussianLikelihood.h
|   M	src/shogun/regression/gp/LaplacianInferenceMethod.h
|   M	src/shogun/regression/gp/LikelihoodModel.h
|   M	src/shogun/regression/gp/StudentsTLikelihood.h
|   M	src/shogun/regression/gp/ZeroMean.h
|   M	src/shogun/regression/svr/LibSVR.h
|   M	src/shogun/regression/svr/MKLRegression.h
|   M	src/shogun/regression/svr/SVRLight.h
|   M	src/shogun/statistics/HSIC.h
|   M	src/shogun/statistics/KernelIndependenceTestStatistic.h
|   M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
|   M	src/shogun/statistics/LinearTimeMMD.h
|   M	src/shogun/statistics/QuadraticTimeMMD.h
|   M	src/shogun/statistics/TestStatistic.h
|   M	src/shogun/statistics/TwoDistributionsTestStatistic.h
|   M	src/shogun/structure/DynProg.h
|   M	src/shogun/structure/IntronList.h
|   M	src/shogun/structure/Plif.h
|   M	src/shogun/structure/PlifArray.h
|   M	src/shogun/structure/PlifMatrix.h
|   M	src/shogun/structure/SegmentLoss.h
|   M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.h
|   M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.h
|   M	src/shogun/transfer/multitask/LibLinearMTL.h
|   M	src/shogun/transfer/multitask/MultitaskCompositeMachine.h
|   M	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
|   M	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
|   M	src/shogun/transfer/multitask/MultitaskKernelMklNormalizer.h
|   M	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
|   M	src/shogun/transfer/multitask/MultitaskKernelPlifNormalizer.h
|   M	src/shogun/transfer/multitask/MultitaskKernelTreeNormalizer.h
|   M	src/shogun/ui/GUIClassifier.h
|   M	src/shogun/ui/GUIDistance.h
|   M	src/shogun/ui/GUIFeatures.h
|   M	src/shogun/ui/GUIHMM.h
|   M	src/shogun/ui/GUIKernel.h
|   M	src/shogun/ui/GUILabels.h
|   M	src/shogun/ui/GUIMath.h
|   M	src/shogun/ui/GUIPluginEstimate.h
|   M	src/shogun/ui/GUIPreprocessor.h
|   M	src/shogun/ui/GUIStructure.h
|   M	src/shogun/ui/GUITime.h
|  
* commit 0c426fa5cdf81c5227b82a62af407276041765d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 24 22:20:02 2012 +0200
| 
|     Fix compilation of perl_modular interface
|     
|     - add proper library suffix
|     - hardcode Core.so of PDL for now
|     - fix SGBase.i
| 
| M	src/configure
| M	src/interfaces/modular/SGBase.i
|  
* commit 68ee4ff3dfb509f6f7b9ed2c4f187f424b82cbfb
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Oct 24 01:10:14 2012 +0400
| 
|     Updated python modular tester to satisfy new labels API
| 
| M	tests/integration/python_modular/classifier.py
| M	tests/integration/python_modular/kernel.py
|  
* commit 0e9806ffa735a0fadb9bce99cdf76ae7a928fbeb
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Oct 24 01:06:57 2012 +0400
| 
|     Updated linear kernel API
| 
| M	src/shogun/kernel/LinearKernel.cpp
| M	src/shogun/kernel/LinearKernel.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit e2f28deb0a6c20511a4140fdebaf7d7133acd2f0
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Tue Oct 23 02:54:23 2012 +0400
| 
|     Added missed SLEP and MALSAR contributions
| 
| M	src/CONTRIBUTIONS
|  
* commit 017ca16e5acf4ec018ee5116df004ad505a6ec4f
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Tue Oct 23 02:48:09 2012 +0400
| 
|     Marked classifiers based on SLEP in documentation
| 
| M	src/shogun/classifier/FeatureBlockLogisticRegression.h
| M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
|  
* commit 5c79c3e65b4b41d1b36444ba95f46da38d5e7e7d
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Oct 22 23:57:37 2012 +0400
| 
|     Updated citations to mention SLEP developers
| 
| M	src/README
|  
* commit 098a977c52bf64a73c97c68271bc394320ab17d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 22 19:44:49 2012 +0200
| 
|     Initial perl interface support
|     
|     - add autodetection to configure for perl/perldl + compile/linkflags
|     - rename parse_label in vw_label to avoid clash with perls parse_label
|     function
|     - add ptizooms initial set of typemaps
| 
| M	src/Makefile.template
| M	src/configure
| A	src/interfaces/perl_modular/pdl.i
| A	src/interfaces/perl_modular/sg_print_functions.cpp
| A	src/interfaces/perl_modular/swig_typemaps.i
| M	src/shogun/classifier/vw/VwParser.cpp
| M	src/shogun/classifier/vw/vw_label.cpp
| M	src/shogun/classifier/vw/vw_label.h
| M	src/shogun/features/streaming/StreamingDenseFeatures.h
|  
* commit 116344a70645ac50e7371d52a5528ee5d4624bd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 22 19:44:22 2012 +0200
| 
|     let equals function check for 1:1 matrix identity and == only if references are the same
| 
| M	src/shogun/lib/SGMatrix.h
|    
*   commit 204c03645965ecf49fe7b25867dff16810a3808a
|\  Merge: c6302de 80016f8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 22 04:46:40 2012 -0700
| | 
| |     Merge pull request #800 from karlnapf/master
| |     
| |     graphical example fix
| |   
| * commit 80016f854f134c933e9d8c11742a013a2493e6a5
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Mon Oct 22 12:43:49 2012 +0100
|   
|       applied api change to make example work again
|   
|   M	examples/undocumented/python_modular/graphical/util.py
|    
*   commit c6302deda3399393187d86ed040f9118cc018757
|\  Merge: 1871569 c380f98
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Oct 20 15:18:35 2012 -0700
| | 
| |     Merge pull request #799 from vigsterkr/master
| |     
| |     Travis: Disabling email notification enabling irc
| |   
| * commit c380f984644d62651ff60e559c045b05496e52e1
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Sat Oct 20 23:55:32 2012 +0200
|   
|       Travis: Disabling email notification enabling irc
|   
|   M	.travis.yml
|    
*   commit 18715695ed57e12291a9982c18ec47f9619a1de9
|\  Merge: fe087f6 ff9feb5
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Oct 20 14:21:41 2012 -0700
| | 
| |     Merge pull request #798 from vigsterkr/master
| |     
| |     Fix typo in travis.yml and add clang support
| |   
| * commit ff9feb5066ffccaa602b882a492cd3550b2a45dd
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Sat Oct 20 23:01:22 2012 +0200
|   
|       Fix typo in travis and add clang support
|   
|   M	.travis.yml
|    
*   commit fe087f6d284d8c58f67e6ed17dda2cb8cc521d19
|\  Merge: f2875ce b8a5ca7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Oct 20 13:17:42 2012 -0700
| | 
| |     Merge pull request #797 from vigsterkr/master
| |     
| |     Travis CI integration
| |     
| *   commit b8a5ca7c9b1f104c22d5701a508c5a550d5f1193
| |\  Merge: 89120f5 8413351
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Oct 19 13:56:32 2012 +0200
| | | 
| | |     Merge branch 'master' of github.com:vigsterkr/shogun
| | |    
| | * commit 84133516a5e4f8cab50ece608d7414030f4b7702
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Oct 19 13:02:29 2012 +0200
| | | 
| | |     Install shogun in order to do tests
| | | 
| | | M	.travis.yml
| | |    
| | * commit 4b7c5617889b8f2c960461ae2217b03b84a308cd
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 23:37:57 2012 +0200
| | | 
| | |     Fix packages for travis VMs
| | | 
| | | M	.travis.yml
| | |    
| | * commit 9cb2e6ba16c5cb9aa8b562893b4342c638e21228
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 23:30:52 2012 +0200
| | | 
| | |     Remove interfaces and install minimum libshogun
| | | 
| | | M	.travis.yml
| | |    
| | * commit eff3362cd5fb7dc271ee9fef17114a5d5a7304cd
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 21:59:15 2012 +0200
| | | 
| | |     Change script line in travis.yml
| | |     Only add python_modular and r_modular interfaces
| | | 
| | | M	.travis.yml
| | |    
| | * commit 1370d96ecff90e47e34decbc650510e114ef70da
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 20:49:56 2012 +0200
| | | 
| | |     Add cd ./src for before_script
| | | 
| | | M	.travis.yml
| | |    
| | * commit dc4b394114c30e5b8850e37d14a4681641a29057
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 20:41:35 2012 +0200
| | | 
| | |     Add travis support
| | | 
| | | A	.travis.yml
| | |    
| * | commit 89120f522989fb7e31b55b5d8e3acd8c9a1ea6dc
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Oct 19 13:02:29 2012 +0200
| | | 
| | |     Install shogun in order to do tests
| | | 
| | | M	.travis.yml
| | |    
| * | commit e02be9286dd1899b514b534cf80cd694fd28dcd6
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 23:37:57 2012 +0200
| | | 
| | |     Fix packages for travis VMs
| | | 
| | | M	.travis.yml
| | |    
| * | commit 5ef3561b04b916d88b4d024c295d500b7c830a5c
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 23:30:52 2012 +0200
| | | 
| | |     Remove interfaces and install minimum libshogun
| | | 
| | | M	.travis.yml
| | |    
| * | commit 89c1d84a38958dee87a7ecaafea401a0c4a663de
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 21:59:15 2012 +0200
| | | 
| | |     Change script line in travis.yml
| | |     Only add python_modular and r_modular interfaces
| | | 
| | | M	.travis.yml
| | |    
| * | commit 0e5129edb56d9cfe9d59aa523227b9e32fc64dcf
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Thu Oct 18 20:49:56 2012 +0200
| | | 
| | |     Add cd ./src for before_script
| | | 
| | | M	.travis.yml
| | |    
| * | commit f8f5799e1be5254154d45e05245ec70a51c0ff20
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Thu Oct 18 20:41:35 2012 +0200
| |   
| |       Add travis support
| |   
| |   A	.travis.yml
| |     
* |   commit f2875ce066c2d345a4b403b832e707712ee423ad
|\ \  Merge: 789b596 6dfc021
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Oct 19 04:48:08 2012 -0700
| | | 
| | |     Merge pull request #796 from vigsterkr/fbsd
| | |     
| | |     Fix GPR examples
| | |    
| * | commit 6dfc0215e8d598a2064fa5db0232ce8c4f6f2315
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Fri Oct 19 13:41:06 2012 +0200
| |   
| |       Fix GPR examples
| |       Gaussian Process Regression examples will not work without NLOPT
| |       Fixing by checking HAVE_NLOPT macro
| |   
| |   M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
| |   
* | commit 789b596f42fc249f93e30e4405bc23776e66a9cb
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Oct 19 13:23:34 2012 +0400
| | 
| |     Added directored contingency table evaluation example
| | 
| | A	examples/undocumented/python_modular/evaluation_director_contingencytableevaluation_modular.py
| |   
* | commit 751226d1305839ee875de69acb90a470bb14ca76
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Fri Oct 19 13:20:26 2012 +0400
|   
|       Added directored contingency table evaluation measure
|   
|   M	src/interfaces/modular/Evaluation.i
|   M	src/interfaces/modular/Evaluation_includes.i
|   M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
|   M	src/shogun/evaluation/ContingencyTableEvaluation.h
|   A	src/shogun/evaluation/DirectorContingencyTableEvaluation.h
|    
*   commit 47e4234fc5e90d6808963c9f3b70cd3e25b90c8a
|\  Merge: 78fa66d b146efb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Oct 18 01:57:01 2012 -0700
| | 
| |     Merge pull request #795 from vigsterkr/master
| |     
| |     Minor changes and fixes for Mosek
| |   
| * commit b146efb45b7410c370de277f4d1aa02d66f7707a
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Thu Oct 18 10:47:32 2012 +0200
|   
|       Minor changes and fixes for Mosek
|       
|       	* fix the example so_multiclass
|         * fix return value referencing in MulticlassModel::argmax
|       	* add primal objective value calculation for PrimalMosekSOSVM solver
|   
|   M	examples/undocumented/libshogun/so_multiclass.cpp
|   M	src/shogun/mathematics/Mosek.cpp
|   M	src/shogun/mathematics/Mosek.h
|   M	src/shogun/structure/MulticlassModel.cpp
|   M	src/shogun/structure/PrimalMosekSOSVM.cpp
|   M	src/shogun/structure/PrimalMosekSOSVM.h
|  
* commit 78fa66de7c3ac793aa3e3a7f5e32be241f73d731
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Oct 17 20:03:10 2012 +0400
| 
|     Fixed copy constructor of sparse features
| 
| M	src/shogun/features/SparseFeatures.cpp
|    
*   commit 47e08d579c4bba8b2be06c4f476fcd773f1b7013
|\  Merge: 3755c8f 86e20b7
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Oct 17 08:36:59 2012 -0700
| | 
| |     Merge pull request #794 from vigsterkr/master
| |     
| |     Operators berween dense and sparse vectors
| |   
| * commit 86e20b706f2f2feff0635a8bac7b65d94411c312
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Wed Oct 17 15:03:17 2012 +0200
| | 
| |     Use SGSparseVector::sparse_dot in SparseFeatures
| | 
| | M	src/shogun/features/SparseFeatures.cpp
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/lib/SGSparseVector.h
| |   
| * commit 381015b917de1c57f8f99a46d8744e6ab8308818
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Wed Oct 17 11:43:58 2012 +0200
|   
|       Operators berween dense and sparse vectors
|       Add support for:
|        * dot product between two sparse vectors
|        * dot product between a sparse and dense vector
|        * add a sparse vector to a dense vector
|   
|   M	src/shogun/lib/SGSparseVector.h
|   M	src/shogun/lib/SGVector.cpp
|   M	src/shogun/lib/SGVector.h
|    
*   commit 3755c8f1c709075ee193e0446635110975bdb453
|\  Merge: 3cde591 21e7b5f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 11:12:45 2012 -0700
| | 
| |     Merge pull request #793 from karlnapf/master
| |     
| |     streaming MMD
| |   
| * commit 21e7b5f47081dd4d01578a2346b531645e35848f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 19:02:46 2012 +0100
| | 
| |     typo
| | 
| | M	src/NEWS
| |   
| * commit b350256496f1d93953bc5c164941b0cb5432283b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:57:29 2012 +0100
| | 
| |     added notes about new data generator classes
| | 
| | M	src/NEWS
| |   
| * commit 7dd76035ee7e79573738b349b110394568a7b3cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:51:58 2012 +0100
| | 
| |     commented out for now, needs more work
| | 
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| |   
| * commit e3cbf3825b285a43eb0cc13958df503d64b16603
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:51:47 2012 +0100
| | 
| |     make examples work with new streaming data generators
| | 
| | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| |   
| * commit 2c7f9ccee8c9dc9d15c21dc69334edd2701cf133
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:46:19 2012 +0100
| | 
| |     added setter for joint features from p and q
| | 
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit 2414ac3b2535302aa40a004645b7b84292ab68ae
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:34:31 2012 +0100
| | 
| |     make use of streaming feature base data generator
| | 
| | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   
| * commit 6796f0faa51371854e8af9ce77129801de6eaa25
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 18:34:08 2012 +0100
| | 
| |     added mean shift generator templates
| | 
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Features_includes.i
| |   
| * commit 28281d61750e73bfe9ab04277b0506525831de36
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 15:06:48 2012 +0100
| | 
| |     added notes about new streaming MMD
| | 
| | M	src/NEWS
| |   
| * commit d5c747209859df9507c8bfa3defffd0eb552184e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 15:06:38 2012 +0100
| | 
| |     added get_kernel_diagonal method
| | 
| | M	src/shogun/kernel/Kernel.h
| |   
| * commit 154c3f31553e10b490cf6d0a2d4f38f961daf323
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 15:06:21 2012 +0100
| | 
| |     added initilalizations that were forgotten
| | 
| | M	src/shogun/io/streaming/InputParser.h
| |   
| * commit 4dbbaa08672d826756b7e8ca037fc09bac95b7b0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 15:06:06 2012 +0100
| | 
| |     added blocksize handling for linear time MMD.
| |     modified examples to work on streaming features
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 48a7d1bda0d71a3ceaf866a2ad223713a07507be
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 15 15:05:34 2012 +0100
| | 
| |     added safety checks that avoid null-pointer exceptions
| | 
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| |   
| * commit f1243e14028ec3d5225c1fa0f0042daf5caf8f5a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:47:23 2012 +0100
| | 
| |     added memory handling via release_example
| | 
| | M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| | M	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
| |   
| * commit e413839ca0b201eb55119e49a26cbd52009ac134
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:47:06 2012 +0100
| | 
| |     removed parser start and end calls
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
| * commit 33c8cb8e256ea663d1c35183a503ce8a9d9babfb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:46:47 2012 +0100
| | 
| |     fixed a memory bug
| |     removed first_run variable
| |     added debug messages
| | 
| | M	src/shogun/io/streaming/InputParser.h
| |   
| * commit 4fbc09fe1b28bc0ad0caa1037dbc269994c23191
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:46:21 2012 +0100
| | 
| |     made SHOGUN aware of memory allocation by using SG_MALLOC and SG_FREE
| | 
| | M	src/shogun/io/streaming/ParseBuffer.h
| |   
| * commit df5a4ad713b3303b005b92bb29053ce08cbed522
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:45:55 2012 +0100
| | 
| |     added equals and == for SGMatrix
| | 
| | M	src/shogun/lib/SGMatrix.h
| |   
| * commit 14788bcf98a85965e7f2ed67ebbdeec992559dca
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:45:37 2012 +0100
| | 
| |     removed a really stupid routine (by myself) that caused memory errors when SGVectors were created in main function
| | 
| | M	src/shogun/lib/SGVector.cpp
| |   
| * commit ce6bd71b201553c5b3e148bc890cfbd6bacd6c1c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:45:00 2012 +0100
| | 
| |     added parser handling to class and mention this is description
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit f43d38694c495d1f0f6d882210538f1aadccc30d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:44:36 2012 +0100
| | 
| |     made example work
| | 
| | M	examples/undocumented/libshogun/streaming_generators.cpp
| |   
| * commit d12b32cb192dbd8dd925adfe7d5b9495516b5bb0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:44:23 2012 +0100
| | 
| |     fixed bugs and added test case where get_streamed_features asks for more data than is available
| | 
| | M	examples/undocumented/libshogun/streaming_from_dense.cpp
| |   
| * commit 36dcc561beed5fe39eadfe5eeea2b6dbdd30aebd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:43:58 2012 +0100
| | 
| |     changed comment
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit a283957b7201742cb8d3fd9cd688ebdde226b3ec
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:43:50 2012 +0100
| | 
| |     removed code from main function to a separate test function in order to have SHOGUN not complaining about memory leaks
| | 
| | M	examples/undocumented/libshogun/classifier_qda.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/features_subset_stack.cpp
| | M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| |   
| * commit 78c25f997f8863ee80a46a9c1e4a5df70b135846
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Oct 10 15:43:08 2012 +0100
| | 
| |     removed code from the main function and replaced code for retreiving dense features from streaming features by new easier method get_streamed_features
| | 
| | M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_discriminant.cpp
| | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| |   
| * commit cc20b0021d021b6b5c895be6c5f07e8a4ac4cd37
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 8 15:32:09 2012 +0100
| | 
| |     added memory address in debug message
| | 
| | M	src/shogun/io/streaming/ParseBuffer.h
| |   
| * commit 0a600eab16fcf7ba14c3561fe1d120418b28904e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Oct 8 15:31:56 2012 +0100
| | 
| |     added debug messages for destructor
| | 
| | M	src/shogun/lib/SGVector.cpp
| |   
| * commit 5a182c3726383ab4974efaac730d4f88520e6c22
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 18:04:51 2012 +0100
| | 
| |     in case of not enough streaming data available, return a smaller dense features object (with smaller matrix)
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
| * commit dcbcb4cb5d161ac4b8cd17885d954ecfcd87b0c1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:35:03 2012 +0100
| | 
| |     added example for data generators for streaming data and a first test for mean shift data
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/streaming_generators.cpp
| |   
| * commit 08c91f65545d4aa4cc0586f777a629145db629bb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:34:46 2012 +0100
| | 
| |     added mean shift data generator class
| | 
| | A	src/shogun/features/streaming/generators/MeanShiftDataGenerator.cpp
| | A	src/shogun/features/streaming/generators/MeanShiftDataGenerator.h
| |   
| * commit b0d95b05a3da8ca01844cdf2678e81cd70f6e070
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:34:31 2012 +0100
| | 
| |     white space
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
| * commit 2914332f16ac2162beea69a4fdf2c8e5a250c0ec
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:34:18 2012 +0100
| | 
| |     added check whether parser was started at least once in order to avoid memory errors
| | 
| | M	src/shogun/io/streaming/InputParser.h
| |   
| * commit f83de6fd3863b6595f4c454a0897001c28305142
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:33:58 2012 +0100
| | 
| |     print to debug message
| | 
| | M	src/shogun/io/streaming/ParseBuffer.h
| |   
| * commit c0540ed3e72e1135719340592a65be99e386afa2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Oct 4 17:33:50 2012 +0100
| | 
| |     updated linear time MMD to work with streaming features
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 1960da1809c2d1aa345fc955f404828b59f5a964
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Sep 27 18:01:52 2012 +0100
| | 
| |     reduce two vector members to one and renamed
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingDenseFeatures.h
| |   
| * commit 90fbeff6aee81daa91cc4895493de9d934719683
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Sep 27 18:01:26 2012 +0100
| | 
| |     updated NEWS
| | 
| | M	src/NEWS
| |   
| * commit 904e4d66edcffd339b152c84428b48fe052f1c13
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Sep 27 18:01:19 2012 +0100
| | 
| |     added getter for parameters based on name
| | 
| | M	src/shogun/base/Parameter.h
| |   
| * commit d3ff644f2f42d26cb4ab021906bf31d095d764b6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Sep 27 18:00:24 2012 +0100
| | 
| |     removed again
| | 
| | D	src/shogun/features/streaming/StreamingDataGenerator.cpp
| | D	src/shogun/features/streaming/StreamingDataGenerator.h
| |   
| * commit a238530d130c6e88722a1b1cf4da4f12c5504b90
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Sep 27 13:44:05 2012 +0100
|   
|       initial commit of new streaming data generator class
|   
|   A	src/shogun/features/streaming/StreamingDataGenerator.cpp
|   A	src/shogun/features/streaming/StreamingDataGenerator.h
|  
* commit 3cde5910fc2501aadd2650ec7093344113d8f36e
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Oct 4 02:06:59 2012 +0400
| 
|     Added ldl and lutil linking flags to fix #791
| 
| M	src/configure
|  
* commit 4b75213b8e31da97d5be8b57e2b8f694b58de56c
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 29 23:16:17 2012 +0400
| 
|     Desativar exemplos de seqüência de Lua
| 
| M	README
| M	examples/undocumented/lua_modular/features_string_char_modular.lua
| M	examples/undocumented/lua_modular/kernel_comm_ulong_string_modular.lua
| M	examples/undocumented/lua_modular/kernel_comm_word_string_modular.lua
| M	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
|  
* commit c19e96d4e92a5641b04e00563943cf7b1d6494c1
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 29 22:35:47 2012 +0400
| 
|     Temporary disabled new streaming libshogun example
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit c60cba809e19a2fce91d20abae30b764226a0ff9
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Sep 26 21:43:38 2012 +0400
| 
|     Fixed initialization in VwParser
| 
| M	src/shogun/classifier/vw/VwParser.cpp
|    
*   commit 116f157fa6bc97c7346b0b81803f5699e9ff3b21
|\  Merge: 5355e4e 9c86327
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 04:10:30 2012 -0700
| | 
| |     Merge pull request #788 from karlnapf/master
| |     
| |     streaming features for LinearTimeMMD
| |   
| * commit 9c8632734019c80e2576c1eb4eab9b184098a472
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:07:35 2012 +0100
| | 
| |     made example work again with latest changes
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 4c6102b650ae63cf410de3a2e2cb670d48d7307a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:07:25 2012 +0100
| | 
| |     removed  constructor which automatically creates streaming features since the involved polymorphism is not easy to solve in c++. But its fine, streaming features may be created by hand when linear tim MMD is constructed
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 9dafc8d78c94eea8c3a91b9e495688e6b931170b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:06:30 2012 +0100
| | 
| |     removed a wrong init from old days
| | 
| | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| |   
| * commit 1627840af8e3c6c75e5047242d4a5e3c2b4d4cf5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:06:21 2012 +0100
| | 
| |     added parser checks to prevent deadlocks
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
| * commit fc5a44015c439451b05fe1a6a7d910f67117a813
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:06:11 2012 +0100
| | 
| |     removed ugly from_non_streaming method
| | 
| | M	src/shogun/features/streaming/StreamingFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.h
| |   
| * commit 21989516b2bb02915a6910c4e4acf9834bb33f2b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 12:05:53 2012 +0100
| | 
| |     debug messages
| | 
| | M	src/shogun/kernel/Kernel.cpp
| |   
| * commit 0d040488aa8849939356fd1208839b7d378fd33b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 11:34:48 2012 +0100
| | 
| |     disabled example for now since there are changed needed in order to work with new streaming linear time MMD
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
| |   
| * commit a758b364190e8001a7d80ee4528d4367c0697182
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 11:32:30 2012 +0100
| | 
| |     fixed MMD example works again (with streaming features), others to come
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 9aac4d7341bc73af67b51c9bee34fad0d5059aad
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 11:32:07 2012 +0100
| | 
| |     removed streaming kernel includes
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit e1f88a289b349bf7a433c5b81d41ac6a056f0fa0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 11:23:16 2012 +0100
| | 
| |     removed streaming kernel from MMD again. Works now with streaming features interface
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit bd38b3f4bf52c357a5d2943410533bb88a109af7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 11:22:57 2012 +0100
| | 
| |     I realised I dont really need this once the streaming features work properly
| | 
| | D	src/shogun/kernel/StreamingKernel.cpp
| | D	src/shogun/kernel/StreamingKernel.h
| |   
| * commit cc79b650d25c4bde76004c444ee9552bc55f59ef
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 00:14:08 2012 +0100
| | 
| |     temporary changes to make example work
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| |   
| * commit 88fd27296e01f13e89232f120578dbda7fa3e866
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 00:13:14 2012 +0100
| | 
| |     lots of minor changes/bugfixes and new debug messages
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.cpp
| | M	src/shogun/io/streaming/ParseBuffer.h
| | M	src/shogun/kernel/StreamingKernel.cpp
| | M	src/shogun/kernel/StreamingKernel.h
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| |   
| * commit 3c4391b9a082ffd50257b618307b1851099ca85d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Sep 26 00:12:51 2012 +0100
| | 
| |     added/changed debug messages
| | 
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| |   
| * commit 78443688b23bac07f47740e116cdd2048f55fb87
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 19:28:38 2012 +0100
| | 
| |     added tests for new method in streaming features
| | 
| | M	examples/undocumented/libshogun/streaming_from_dense.cpp
| |   
| * commit 42ba4c118ed53c56b2cedc2d63311048d5a83dcf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 19:28:23 2012 +0100
| | 
| |     some updates on get_streamed_features
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
| * commit f385dd30073f61b89c6f790b4045ae22c3b0226c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 19:27:51 2012 +0100
| | 
| |     added element wise comparison operator == for SGMatrix
| | 
| | M	src/shogun/lib/SGMatrix.h
| |   
| * commit 2a836743ce898eaa3470da3ab2738f6fbfdeb35e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 17:26:09 2012 +0100
| | 
| |     larger changes towards making streaming MMD work. does compile but not yet work
| | 
| | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.h
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/StreamingKernel.cpp
| | M	src/shogun/kernel/StreamingKernel.h
| | M	src/shogun/statistics/HSIC.cpp
| | M	src/shogun/statistics/HSIC.h
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| | M	src/shogun/statistics/LinearTimeMMD.h
| | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | M	src/shogun/statistics/QuadraticTimeMMD.h
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| |   
| * commit cc8a7f25a3cdc274cccc59a7b35b9e9ecf28815f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 18:30:51 2012 +0100
| | 
| |     made one streaming example work again, memory leak is now gone. therefore, added to Makefile again
| | 
| | M	examples/undocumented/libshogun/Makefile
| | M	examples/undocumented/libshogun/streaming_from_dense.cpp
| |   
| * commit 1f72b257cd3831148b6f5658ee7d7e90a27f88e9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 18:30:27 2012 +0100
| | 
| |     various minor code changes, intending, and most important bug-fixing
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.cpp
| | M	src/shogun/features/streaming/StreamingFeatures.h
| | M	src/shogun/io/streaming/InputParser.h
| | M	src/shogun/io/streaming/ParseBuffer.h
| | M	src/shogun/io/streaming/StreamingFileFromDenseFeatures.h
| |   
| * commit 6ab0099b629532ebc757709182c4ed50638f68c1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Sep 25 18:29:44 2012 +0100
| | 
| |     renamed example file
| | 
| | A	examples/undocumented/libshogun/streaming_from_dense.cpp
| | D	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
| * commit 32a73cd6a0849e78503fa28b09592cd88e428c19
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Sep 24 15:59:59 2012 +0100
| | 
| |     added new method get_streamed_features to draw "normal" features from streaming features
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | M	src/shogun/features/streaming/StreamingDenseFeatures.h
| | M	src/shogun/features/streaming/StreamingFeatures.h
| |   
| * commit 7147322873c13e8aa9ebf6922586f3c97b1aaaa3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Sep 24 15:59:20 2012 +0100
| | 
| |     added initial draft of new streaming kernel
| | 
| | M	src/shogun/kernel/Kernel.h
| | A	src/shogun/kernel/StreamingKernel.cpp
| | A	src/shogun/kernel/StreamingKernel.h
| |   
| * commit 16a1823644bf1c37d9b59c0f4c63364057125fa1
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Mon Sep 24 13:52:50 2012 +0100
|   
|       mention values/confidences change in labels
|   
|   M	src/NEWS
|    
*   commit 5355e4ecd0213929544626abfe422766542dc435
|\  Merge: 2250ce5 2671c91
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Sep 26 00:48:10 2012 -0700
| | 
| |     Merge pull request #790 from vigsterkr/master
| |     
| |     Fix possible memory leak in lib/slep
| |   
| * commit 2671c9158b1d0fb4d468e3d21692325698004e32
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Wed Sep 26 09:34:10 2012 +0200
|   
|       Fix memory leak in lib/slep
|   
|   M	src/shogun/lib/slep/SpInvCoVa/invCov.cpp
|   M	src/shogun/lib/slep/flsa/tesla_proj.cpp
|  
* commit 2250ce529a992739de4e0adad792e644ff3c14a4
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 23 23:04:28 2012 +0400
| 
|     Fixed ruby string typemaps
| 
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit e0a93adc4338325305ad98c3bfba6aebfad94d5f
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 23 17:29:19 2012 +0400
| 
|     A few more stringfeatures improvements
| 
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
| M	src/shogun/preprocessor/DecompressString.cpp
|  
* commit 9a174ee9dd36b59835ff513eccf026467d297b0c
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 23 02:03:26 2012 +0400
| 
|     Fixed compressed string features crasher and a few more potential memory errors
| 
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/lib/SGString.h
|  
* commit 2b5afc54f1e16003b96824892838fcfb78ed16c7
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 22 19:42:07 2012 +0400
| 
|     Updated news
| 
| M	src/NEWS
|    
*   commit dac42e1c3aa285244290484fa19b14511ba5fea3
|\  Merge: a58fa6e d76d8b7
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Sep 21 16:39:46 2012 -0700
| | 
| |     Merge pull request #786 from aasted/gaussian_bugfix
| |     
| |     Fix for parameter order bug in GaussianKernel
| |   
| * commit d76d8b7986f03af959abaff81a1692f78a6b3460
| | Author: Matt Aasted <aasted@pocketgems.com>
| | Date:   Fri Sep 21 15:36:53 2012 -0700
| | 
| |     Fix for parameter order bug in GaussianKernel
| | 
| | M	src/shogun/kernel/GaussianKernel.cpp
| |   
* | commit a58fa6e84336bab70bb69400cc515d2f5c64fbaf
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Sep 21 00:12:56 2012 +0400
| | 
| |     Made SGString based on the SGReferencedData class
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/lua_modular/swig_typemaps.i
| | M	src/interfaces/matlab_static/MatlabInterface.cpp
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/features/StringFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/BinaryFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/kernel/string/SpectrumRBFKernel.cpp
| | M	src/shogun/lib/SGString.h
| | M	src/shogun/lib/SGStringList.h
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| | M	src/shogun/ui/GUIFeatures.cpp
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 7a4c62ea33a4988e0f9a554b0805e993807cdcd1
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Wed Sep 19 09:02:25 2012 +0200
|   
|       use const struct dirent for Mac OSX Lion (10.7.X) too (Closes: #784, #785)
|   
|   M	src/shogun/io/SGIO.h
|  
* commit fabddb362a1906aa93ed455884e51cabd1d04d85
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 15 20:33:57 2012 +0400
| 
|     Added missed includes in multitask mask pair normalizer
| 
| M	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
|  
* commit e8ea95ebe0a079b4bde482b9bfb15d06410c9f01
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 15 20:08:13 2012 +0400
| 
|     Made TRON independent of BLAS. Closes #783.
| 
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
| M	src/shogun/multiclass/MulticlassLibLinear.h
| M	src/shogun/optimization/liblinear/shogun_liblinear.cpp
| M	src/shogun/optimization/liblinear/shogun_liblinear.h
| M	src/shogun/optimization/liblinear/tron.cpp
| M	src/shogun/optimization/liblinear/tron.h
|  
* commit 4217b41898a5e0a9fc2e3d4c5f4eb7410d848020
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 15 20:07:47 2012 +0400
| 
|     Fix for changes in #772 - memory-wise correct get_features in StringFeatures
| 
| M	src/shogun/features/StringFeatures.cpp
|  
* commit 66970488d7b355b2f7a9f4ec0dc07c8df5fd2eda
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sat Sep 15 18:23:58 2012 +0400
| 
|     Turned SGStringList into the object derived from the SGReferencedData. Closes #772
|     
|     The downside is that string features now copy strings on setting.
| 
| M	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/lib/SGStringList.h
|    
*   commit 525e9eb270042525c30daa07e1a06f135f2b4d38
|\  Merge: 3769544 8a00181
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Sep 14 07:43:42 2012 -0700
| | 
| |     Merge pull request #782 from karlnapf/master
| |     
| |     refactoring for upcoming labels change
| |   
| * commit 8a00181a5367daab8ba740f4cd5171fbad7ffa9c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Sep 14 15:42:19 2012 +0100
| | 
| |     refactored confidences into current_values in order to prepare having multiple of these vectors. No changes in semantics so far
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	examples/undocumented/libshogun/labels_binary_fit_sigmoid.cpp
| | M	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/labels/BinaryLabels.cpp
| | M	src/shogun/labels/BinaryLabels.h
| | M	src/shogun/labels/Labels.cpp
| | M	src/shogun/labels/Labels.h
| | M	src/shogun/labels/MulticlassLabels.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| |   
| * commit b99fa123df2ecad994f849c501906eac29d3e141
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Sep 14 15:38:08 2012 +0100
|   
|       added note about kernel based statistical tests
|   
|   M	src/NEWS
|  
* commit 3769544c39fc82e3d4a6638a0d968fbf17479f95
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Sep 13 21:43:14 2012 +0400
| 
|     Fixed crasher caused by changes in #771
| 
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 0e63946286bb7e52f9304d75d9548a1b904e3194
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Sep 13 11:39:04 2012 +0400
| 
|     Update src/NEWS
| 
| M	src/NEWS
|  
* commit af52af33d16b6677739c3052ff1d512575c64f21
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Sep 13 09:45:03 2012 +0400
| 
|     Rebased SGNDArray on SGReferencedData. Closes #771
| 
| A	src/shogun/lib/SGNDArray.cpp
| M	src/shogun/lib/SGNDArray.h
| M	src/shogun/multiclass/QDA.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 89373e443035f5b47e96e49a4fd8ad14b2579519
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 9 12:36:12 2012 +0400
| 
|     Updated data generation routines in converters examples
| 
| M	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| M	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_isomap.cpp
| M	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| M	examples/undocumented/libshogun/converter_linearlocaltangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| M	examples/undocumented/libshogun/converter_neighborhoodpreservingembedding.cpp
| M	examples/undocumented/libshogun/converter_stochasticproximityembedding.cpp
|  
* commit 2e418773aa779ab0264c3a865809ce678e8c13a9
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Sep 6 22:40:44 2012 +0400
| 
|     Better data matrix for LPP example
| 
| M	examples/undocumented/libshogun/converter_localitypreservingprojections.cpp
|  
* commit 15ed29239e2f83e7cd8c5097d9180999cffeab56
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 21:54:36 2012 +0200
| 
|     undo NEWS change that overwrote 2.0.0 NEWS item
| 
| M	src/NEWS
|  
* commit 2a857526b9d012cc75a507aef8c70cded0b34332
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 21:52:48 2012 +0200
| 
|     init with defaults to get error messages
| 
| M	examples/undocumented/libshogun/converter_localitypreservingprojections.cpp
| M	src/shogun/converter/LocalityPreservingProjections.cpp
|  
* commit bacd2cc7a5c091c229c08a0330c80a2c8ab0dcb1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 08:24:04 2012 +0200
| 
|     commit updated examples
| 
| M	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ExamplesModularCSharp.mainpage
| M	doc/pages/ExamplesModularJava.mainpage
| M	doc/pages/ExamplesModularLua.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
|  
* commit 2064bf44431b8d0a0203691e3c6705ca1da41977
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 4 22:36:31 2012 +0200
| 
|     update news for 2.0.1
| 
| M	Makefile
| M	src/NEWS
|  
* commit c3d2cb385c40da1980396e478be37254ec374144
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 4 09:08:52 2012 +0200
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 601c72a70de30f6910638bd9f5ae1fbfb7e98f56
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 4 08:14:11 2012 +0200
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 6f2b3628d0e6204394bdcfee56014540d5a020cb
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Tue Sep 4 22:59:46 2012 +0400
| 
|     Increased data version and mentioned yoo in news
| 
| M	src/NEWS
|  
* commit e7c3462104afbb27daba33086e579db875df7368
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 22:29:59 2012 +0400
| 
|     Fixes for msplicer
| 
| M	applications/msplicer/signal_detectors.py
|  
* commit fd33d776f3dfe34566374487ef78bc6bf1fe6f52
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 22:21:02 2012 +0400
| 
|     A few fixes for asp
| 
| M	applications/asp/signal_detectors.py
|  
* commit 8eac595bc971650a17bf2bc244eff46acf80e861
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 22:16:45 2012 +0400
| 
|     Updated data
| 
| M	data
|  
* commit 2d57c629c8872c14688e783a4d7a31ce28f8cf0f
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 22:16:14 2012 +0400
| 
|     Updated easysvm
| 
| M	applications/easysvm/esvm/experiment.py
| M	applications/easysvm/tutpaper/svm_params.py
|  
* commit 9bbe807098c0c8a9ae5094e208ccb0a02efdd282
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 22:08:34 2012 +0400
| 
|     Updated ocr data
| 
| M	applications/ocr/data/ocr.svm.gz
|  
* commit 71f80cb5c6594018c9752fccc7f981d76b10eba8
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 21:31:43 2012 +0400
| 
|     Dropped sailfish application
| 
| D	applications/sailfish/Makefile
| D	applications/sailfish/sailfish.cpp
| D	applications/sailfish/scripts/generate_mask.py
|  
* commit 1a78d6156159451b79780aed236c5280753b9963
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Mon Sep 3 21:30:58 2012 +0400
| 
|     Forward declarations for GPs and modular interfaces
| 
| M	src/shogun/regression/GaussianProcessRegression.h
| M	src/shogun/regression/gp/ExactInferenceMethod.h
|  
* commit aedcfae512db48e5418442eaf9d4b6d47fdc8dba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 19:02:39 2012 +0200
| 
|     let cholesky_{insert/delete} return newly created R matrix
| 
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.h
|  
* commit 51aecfe7a9912d0bc0f456957c25ab08b878b54e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 14:50:55 2012 +0200
| 
|     assume eigen3 / nlopt are available when generating doxygen doc
| 
| M	doc/Doxyfile
|  
* commit cd23d437ec685b8e6f5edd648334ca411b2931aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 14:50:37 2012 +0200
| 
|     fix typo -> templatE
| 
| M	src/Makefile.template
|  
* commit cb4b2b5dc4b33654d9ea405c2e6e563b4f4ed0a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 14:50:06 2012 +0200
| 
|     disable reference counts for bare ptrs
| 
| M	src/shogun/multiclass/QDA.h
|    
*   commit dc3534b45e94ba84ea5052ee9296bde9a02dcbfc
|\  Merge: 60f20df f874098
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 3 02:38:47 2012 -0700
| | 
| |     Merge pull request #768 from uricamic/BM_SOL_EXAMPLE
| |     
| |     so_multiclass_BMRM libshogun example random number generator seed
| |   
| * commit f874098d66ad454a86bd40ac39b39349e6abdf84
|/  Author: Michal Uricar <uricar.michal@gmail.com>
|   Date:   Mon Sep 3 11:30:56 2012 +0200
|   
|       so_multiclass_BMRM libshogun example random number generator seed
|   
|   M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
|  
* commit 60f20df97884bfea36db3fac3675aca64b4c495f
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 23:43:52 2012 +0400
| 
|     Updated VW application
| 
| M	applications/vw/vw.cpp
|  
* commit 2cbba38f54149edcd57f2fe3b51e01705f871901
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 23:29:45 2012 +0400
| 
|     Updated OCR application due to multiclass labels
| 
| M	applications/ocr/Ai.py
|  
* commit 091ebdca537ba84ea7e48dddfcbd301f35bb5f68
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 23:26:41 2012 +0400
| 
|     Made mds tutorial example use normal distance instead of idiot cosine based one
| 
| M	applications/edrt/tutorial_examples/mds.py
|  
* commit 10beb7ab2b9474bbc605495ce0418bd87f67891a
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 23:25:59 2012 +0400
| 
|     Made isomap tutorial example use normal distance instead of idiot cosine based one
| 
| M	applications/edrt/tutorial_examples/isomap.py
|  
* commit faf87e84904051063b7f3be167850f5f38c1dcc9
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 23:00:50 2012 +0400
| 
|     Update examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
|     
|     Fixed crasher
| 
| M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
|  
* commit 308c1b3c13f2cee77cc6e63f870f0c41d1ce1bfb
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 22:58:55 2012 +0400
| 
|     Update src/shogun/regression/GaussianProcessRegression.cpp
| 
| M	src/shogun/regression/GaussianProcessRegression.cpp
|  
* commit e455486d4ff407669d640076aa5bf9157886005b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 2 20:56:27 2012 +0200
| 
|     fix Euclidian -> Euclidean
| 
| M	applications/edrt/faces_embedding.py
|  
* commit 7bb1224e8e0a6fa72c21280e3087106509f5e3a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 2 20:34:59 2012 +0200
| 
|     fix svr and krr examples
| 
| M	examples/undocumented/python_modular/graphical/kernel_ridge_regression_sinc.py
| M	examples/undocumented/python_modular/graphical/svr_sinc.py
| M	examples/undocumented/python_modular/graphical/util.py
|  
* commit 684cd3a6919585917ca6eb91e824964e1452961d
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 21:30:05 2012 +0400
| 
|     GP regression memory issues fixes
| 
| M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
| M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| M	src/shogun/lib/Map.h
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| M	src/shogun/regression/gp/InferenceMethod.cpp
|    
*   commit 7e780c273b78ced7c9fa5e28cb2b4a8def5e3112
|\  Merge: ad4ac3c 2482cb1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Sep 2 10:22:53 2012 -0700
| | 
| |     Merge pull request #767 from iglesias/master
| |     
| |     fix memory leaks in so_multiclass_BMRM example
| |   
| * commit 2482cb172ef468ff4fd43a3587ad1affe5b544dc
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Sun Sep 2 18:40:52 2012 +0200
|   
|       * fix memory leaks in so_multiclass_BMRM example
|   
|   M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
|  
* commit ad4ac3c90d1420aa96bdd302e682a9e97dd09b26
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 12:14:15 2012 +0400
| 
|     Fixed CMap destroy method to avoid memory leaks
| 
| M	src/shogun/lib/Map.h
|  
* commit 442ceac9b5ea2d2f0fac4835dba31de7bd5231d3
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 11:33:26 2012 +0400
| 
|     Fixed sparse copy subset method and its example
| 
| M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| M	src/shogun/features/SparseFeatures.cpp
|  
* commit a97a0eddc1aabf8dbe1d6fbadb47a7534b0e53a7
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 11:29:36 2012 +0400
| 
|     More guard fixes for #766
| 
| M	src/shogun/regression/gp/LaplacianInferenceMethod.h
|  
* commit f89d7b806bf15b4f6cfe65fa466090d8a1676c84
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 11:23:57 2012 +0400
| 
|     Fixed more guards in GPs
| 
| M	src/shogun/regression/gp/FITCInferenceMethod.h
| M	src/shogun/regression/gp/GaussianLikelihood.cpp
|  
* commit 47ed83f930cb437c0356154a911fd9763ee7b661
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Sun Sep 2 11:17:46 2012 +0400
| 
|     Fixed position of eigen3 guard in student t likelihood class
| 
| M	src/shogun/regression/gp/StudentsTLikelihood.cpp
|    
*   commit 6579577d446cf35212fa78cfc4a9931aed4d0057
|\  Merge: f28f44a 8e08232
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Sep 2 00:11:46 2012 -0700
| | 
| |     Merge pull request #766 from puffin444/master
| |     
| |     Cleared references to Eigen in header files.
| |   
| * commit 8e0823264e3ceac989a76cf87fecf5eb50c62a96
| | Author: puffin444 <walke434@gmail.com>
| | Date:   Sun Sep 2 01:08:14 2012 -0400
| | 
| |     Fixed rebasing stuff.
| | 
| | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| |     
| *   commit 6593580ebade8c4f581acdaae77978848e20cfdc
| |\  Merge: aedf244 76d0e03
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Sun Sep 2 00:47:34 2012 -0400
| | | 
| | |     Merge branch 'master' of https://github.com/puffin444/shogun
| | |    
| | * commit 76d0e03701e6f6bc2af8d1aa87c95c56d8dda8aa
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Sun Sep 2 00:30:44 2012 -0400
| | | 
| | |     Fixed a bug.
| | | 
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | |    
| | * commit 5575e33d65a48cc8bfd19f7767ada20c6202df40
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Thu Aug 30 00:03:55 2012 -0400
| | | 
| | |     Fixed horrible memory problems.
| | | 
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | |    
| | * commit 6b9e8760cbf0a80b55a5a836e3abb93f77419519
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Sun Aug 26 20:42:59 2012 -0400
| | | 
| | |     Removed Eigen references! But there is a segfault in the
| | |     libshogun laplacian example :(
| | | 
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.h
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | |    
| * | commit aedf244183c81dd48f765172116723aa69e6a7ec
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Sun Sep 2 00:30:44 2012 -0400
| | | 
| | |     Fixed a bug.
| | | 
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | |    
| * | commit 1729bcc015d5ae55033be8dc710f20a27ef9b18f
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Thu Aug 30 00:03:55 2012 -0400
| | | 
| | |     Fixed horrible memory problems.
| | | 
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | |    
| * | commit f41f03a9a34f8bcf1beafbb3768bbdf5c878fe03
|/ /  Author: puffin444 <walke434@gmail.com>
| |   Date:   Sun Aug 26 20:42:59 2012 -0400
| |   
| |       Removed Eigen references! But there is a segfault in the
| |       libshogun laplacian example :(
| |   
| |   M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| |   M	src/shogun/regression/gp/FITCInferenceMethod.h
| |   M	src/shogun/regression/gp/GaussianLikelihood.cpp
| |   M	src/shogun/regression/gp/GaussianLikelihood.h
| |   M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| |   M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| |   M	src/shogun/regression/gp/LikelihoodModel.h
| |   M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| |   M	src/shogun/regression/gp/StudentsTLikelihood.h
| |     
* |   commit f28f44ac86e6400a39775c90c7a07c2f5de30911
|\ \  Merge: 8c032cb b1991f3
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Sep 1 05:36:53 2012 -0700
| | | 
| | |     Merge pull request #765 from iglesias/master
| | |     
| | |     Fix compile error in ecoc discrimant example
| | |    
| * | commit b1991f3922eaf784086535170ec9d48b77b0e8a7
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Sat Sep 1 14:21:39 2012 +0200
| |   
| |       * fix compile error in ecoc discrimant example
| |   
| |   M	examples/undocumented/libshogun/classifier_multiclass_ecoc_discriminant.cpp
| |     
* |   commit 8c032cbbd2a5dad0873e7f4066bee59cce6f9727
|\ \  Merge: df2d56c 8965c59
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Sep 1 05:08:24 2012 -0700
| | | 
| | |     Merge pull request #764 from iglesias/master
| | |     
| | |     Fix streaming files includes in examples
| | |    
| * | commit 8965c598a95eb92bdd7d7ce2dfcf9143e227a258
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Sat Sep 1 14:04:23 2012 +0200
| |   
| |       * fix streaming files includes in examples
| |   
| |   M	examples/undocumented/libshogun/balanced_conditional_probability_tree.cpp
| |   M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| |   M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| |     
* |   commit df2d56c653796aba13b0da3d9b31663ed5fc5c76
|\ \  Merge: 9e92392 2b219ab
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Sep 1 01:16:48 2012 -0700
| | | 
| | |     Merge pull request #763 from iglesias/master
| | |     
| | |     Some fixes in libshogun examples
| | |    
| * | commit 2b219ab2595bcbd7473256e531ff4a03dbeb5265
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Sep 1 01:52:44 2012 +0200
| | | 
| | |     * fix compile errors in multiclass ECOC random example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| | |    
| * | commit c11bbf8090c30ca4f105bc806aba03f2943c8818
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Sep 1 01:49:18 2012 +0200
| | | 
| | |     * fix compile errors in multiclass ECOC discriminant example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_discriminant.cpp
| | |    
| * | commit fce237caeadfb1c8862f7c1ed92913fa428883fa
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Sep 1 01:42:26 2012 +0200
| | | 
| | |     * fix compile errors in multiclass ECOC example + add example in Makefile
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| | |    
| * | commit 70b34d58baaf4d0fda642c28735d98c30c131846
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Sep 1 01:22:05 2012 +0200
| | | 
| | |     * memory leak fix in balanced CPT example + add example in makefile
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/balanced_conditional_probability_tree.cpp
| | |    
| * | commit 77726d8c243cfbc07d452af927bf33baff315b30
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Sat Sep 1 01:20:56 2012 +0200
| |   
| |       * bug fix in CPT's destructor, features member were not freed
| |   
| |   M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| |   
* | commit 9e92392d28364109efae45282fa2105e64d27fde
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 31 13:31:40 2012 +0200
| | 
| |     fix a couple of memory leaks in so example (mostly unnecessary SG_REF's
| |     		of newly created objects that are returned)
| | 
| | M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | M	src/shogun/structure/MulticlassModel.cpp
| |   
* | commit 958ce8f1e1d6748cc3cc78fe811bb7a2abd0fddf
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 31 11:07:27 2012 +0200
| | 
| |     disable refcounting for sparse matrix
| | 
| | M	src/shogun/features/SparseFeatures.cpp
| |   
* | commit 2535f4436a66551159054239f02125b7c177110a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 31 10:56:06 2012 +0200
| | 
| |     remove free() in destructor (causing a double free)
| | 
| | M	src/shogun/multiclass/KNN.cpp
| |   
* | commit fc5a1200ec7f39a0cbb569e9862c504f98c4b9d7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 31 10:45:47 2012 +0200
| | 
| |     disable refcounting for 'current' vector in streaming features
| | 
| | M	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| |   
* | commit bb0907c310d5d0b42255f20c77fdb6d5e06e813c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 31 10:09:15 2012 +0200
| | 
| |     enable reference counting by default (even in default constructors) for SG Datatypes
| | 
| | M	src/shogun/features/DenseFeatures.cpp
| | M	src/shogun/lib/SGMatrix.h
| | M	src/shogun/lib/SGMatrixList.cpp
| | M	src/shogun/lib/SGSparseMatrix.h
| | M	src/shogun/lib/SGSparseVector.h
| | M	src/shogun/lib/SGVector.cpp
| |   
* | commit 25ba47c47b7ea4046382ce74a2da02af856406f6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Aug 31 01:39:26 2012 +0400
| | 
| |     Another way to avoid memleak with dense features serialization
| | 
| | M	src/shogun/features/DenseFeatures.cpp
| | M	src/shogun/lib/SGMatrix.h
| |   
* | commit 45209869cdc779f5b6ad3aa65392c28dcd114a2a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Aug 30 22:41:17 2012 +0400
| | 
| |     Fixed SGMatrix constructor
| | 
| | M	src/shogun/lib/SGMatrix.h
| |   
* | commit 78f693ce8456b62cd56e31866255b28e3823f687
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Aug 30 20:37:54 2012 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 80fee549167f9150863076b65a4ad5d8ff061d33
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Aug 30 20:35:35 2012 +0400
| | 
| |     Fixed memleak in slep solver
| | 
| | M	src/shogun/lib/slep/slep_solver.cpp
| |   
* | commit 4c43de1140dfac3d7f2fdcfbce6cfab24c7704c7
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Aug 30 20:25:45 2012 +0400
| | 
| |     Fixed doc mistake in statistics
| | 
| | M	src/shogun/mathematics/Statistics.h
| |     
* |   commit d321e367d969bae6664ba52cc37a4802f84e9b60
|\ \  Merge: 41d2350 148781d
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Aug 30 00:52:04 2012 -0700
| | | 
| | |     Merge pull request #762 from gsomix/fix_examples
| | |     
| | |     Fixed order of imports in hmsvm examples
| | |    
| * | commit 148781d074ed6146e270177686af69c42bdc3559
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Thu Aug 30 11:50:44 2012 +0400
| |   
| |       fixed order of imports
| |   
| |   M	examples/undocumented/python_modular/structure_hmsvm_bmrm.py
| |   M	examples/undocumented/python_modular/structure_hmsvm_mosek.py
| |     
* |   commit 41d235012ea927202de61b5ef7d67a7a38f6eb67
|\ \  Merge: feafbf7 4cac666
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 29 23:55:56 2012 -0700
| | | 
| | |     Merge pull request #761 from gsomix/examples
| | |     
| | |     Fixes and clean ups in python examples
| | |    
| * | commit 4cac66648d24c4d70a868a2b3b57b7dbf89090f2
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Aug 30 00:11:02 2012 +0400
| | | 
| | |     added env path
| | | 
| | | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | M	examples/undocumented/python_modular/classifier_conjugateindex_modular.py
| | | M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| | | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_featureblock_logistic_regression.py
| | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | M	examples/undocumented/python_modular/classifier_lda_modular.py
| | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| | | M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| | | M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_relaxedtree.py
| | | M	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| | | M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclassmultipleoutputliblinear_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| | | M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| | | M	examples/undocumented/python_modular/classifier_qda_modular.py
| | | M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| | | M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| | | M	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| | | M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| | | M	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| | | M	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| | | M	examples/undocumented/python_modular/converter_isomap_modular.py
| | | M	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | | M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| | | M	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| | | M	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
| | | M	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| | | M	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| | | M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| | | M	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| | | M	examples/undocumented/python_modular/distance_braycurtis_modular.py
| | | M	examples/undocumented/python_modular/distance_canberra_modular.py
| | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | M	examples/undocumented/python_modular/distance_chebyshew_modular.py
| | | M	examples/undocumented/python_modular/distance_chisquare_modular.py
| | | M	examples/undocumented/python_modular/distance_cosine_modular.py
| | | M	examples/undocumented/python_modular/distance_director_euclidian_modular.py
| | | M	examples/undocumented/python_modular/distance_euclidian_modular.py
| | | M	examples/undocumented/python_modular/distance_geodesic_modular.py
| | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | M	examples/undocumented/python_modular/distance_jensen_modular.py
| | | M	examples/undocumented/python_modular/distance_mahalanobis_modular.py
| | | M	examples/undocumented/python_modular/distance_manhatten_modular.py
| | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | M	examples/undocumented/python_modular/distance_minkowski_modular.py
| | | M	examples/undocumented/python_modular/distance_normsquared_modular.py
| | | M	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| | | M	examples/undocumented/python_modular/distance_tanimoto_modular.py
| | | M	examples/undocumented/python_modular/distribution_histogram_modular.py
| | | M	examples/undocumented/python_modular/distribution_hmm_modular.py
| | | M	examples/undocumented/python_modular/distribution_linearhmm_modular.py
| | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | M	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | M	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
| | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| | | M	examples/undocumented/python_modular/features_binned_dot_modular.py
| | | M	examples/undocumented/python_modular/features_dense_byte_modular.py
| | | M	examples/undocumented/python_modular/features_dense_longint_modular.py
| | | M	examples/undocumented/python_modular/features_dense_modular.py
| | | M	examples/undocumented/python_modular/features_dense_protocols_modular.py
| | | M	examples/undocumented/python_modular/features_dense_real_modular.py
| | | M	examples/undocumented/python_modular/features_dense_zero_copy_modular.py
| | | M	examples/undocumented/python_modular/features_director_dot_modular.py
| | | M	examples/undocumented/python_modular/features_io_modular.py
| | | M	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| | | M	examples/undocumented/python_modular/features_snp_modular.py
| | | M	examples/undocumented/python_modular/features_sparse_modular.py
| | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | M	examples/undocumented/python_modular/features_string_char_modular.py
| | | M	examples/undocumented/python_modular/features_string_file_char_modular.py
| | | M	examples/undocumented/python_modular/features_string_file_modular.py
| | | M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| | | M	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| | | M	examples/undocumented/python_modular/features_string_ulong_modular.py
| | | M	examples/undocumented/python_modular/features_string_word_modular.py
| | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | M	examples/undocumented/python_modular/kernel_auc_modular.py
| | | M	examples/undocumented/python_modular/kernel_cauchy_modular.py
| | | M	examples/undocumented/python_modular/kernel_chi2_modular.py
| | | M	examples/undocumented/python_modular/kernel_circular_modular.py
| | | M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| | | M	examples/undocumented/python_modular/kernel_combined_modular.py
| | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_const_modular.py
| | | M	examples/undocumented/python_modular/kernel_custom_modular.py
| | | M	examples/undocumented/python_modular/kernel_diag_modular.py
| | | M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| | | M	examples/undocumented/python_modular/kernel_distance_modular.py
| | | M	examples/undocumented/python_modular/kernel_distantsegments_modular.py
| | | M	examples/undocumented/python_modular/kernel_exponential_modular.py
| | | M	examples/undocumented/python_modular/kernel_fisher_modular.py
| | | M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| | | M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| | | M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_inversemultiquadric_modular.py
| | | M	examples/undocumented/python_modular/kernel_io_modular.py
| | | M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| | | M	examples/undocumented/python_modular/kernel_linear_modular.py
| | | M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| | | M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_log_modular.py
| | | M	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_multiquadric_modular.py
| | | M	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_poly_modular.py
| | | M	examples/undocumented/python_modular/kernel_power_modular.py
| | | M	examples/undocumented/python_modular/kernel_rationalquadratic_modular.py
| | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| | | M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| | | M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| | | M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| | | M	examples/undocumented/python_modular/kernel_spherical_modular.py
| | | M	examples/undocumented/python_modular/kernel_spline_modular.py
| | | M	examples/undocumented/python_modular/kernel_top_modular.py
| | | M	examples/undocumented/python_modular/kernel_tstudent_modular.py
| | | M	examples/undocumented/python_modular/kernel_wave_modular.py
| | | M	examples/undocumented/python_modular/kernel_wavelet_modular.py
| | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| | | M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| | | M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | | M	examples/undocumented/python_modular/library_time.py
| | | M	examples/undocumented/python_modular/mathematics_sparseinversecovariance_modular.py
| | | M	examples/undocumented/python_modular/mkl_binclass_modular.py
| | | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr_modular.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_liblinear_modular.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr_modular.py
| | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | M	examples/undocumented/python_modular/modelselection_random_search_liblinear_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_kernelpca_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_normone_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_pca_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_randomfouriergausspreproc_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | | M	examples/undocumented/python_modular/regression_kernel_ridge_modular.py
| | | M	examples/undocumented/python_modular/regression_least_squares_modular.py
| | | M	examples/undocumented/python_modular/regression_libsvr_modular.py
| | | M	examples/undocumented/python_modular/regression_linear_ridge_modular.py
| | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | M	examples/undocumented/python_modular/serialization_matrix_modular.py
| | | M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| | | M	examples/undocumented/python_modular/so_multiclass.py
| | | M	examples/undocumented/python_modular/statistics_hsic.py
| | | M	examples/undocumented/python_modular/statistics_kmm.py
| | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | M	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| | | M	examples/undocumented/python_modular/streaming_vw_modular.py
| | | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | A	examples/undocumented/python_modular/tools/multiclass_shared.py
| | | M	examples/undocumented/python_modular/transfer_multitask_clustered_logistic_regression.py
| | | M	examples/undocumented/python_modular/transfer_multitask_l12_logistic_regression.py
| | | M	examples/undocumented/python_modular/transfer_multitask_leastsquares_regression.py
| | | M	examples/undocumented/python_modular/transfer_multitask_logistic_regression.py
| | | M	examples/undocumented/python_modular/transfer_multitask_trace_logistic_regression.py
| | |    
| * | commit 037f1ed1f098d46ae8a5bb5d563df40eb3302d6f
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Wed Aug 29 23:57:29 2012 +0400
| |   
| |       many fixes in examples
| |   
| |   M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| |   M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| |   M	examples/undocumented/python_modular/classifier_featureblock_logistic_regression.py
| |   M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| |   M	examples/undocumented/python_modular/classifier_knn_modular.py
| |   M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| |   M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_relaxedtree.py
| |   M	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| |   D	examples/undocumented/python_modular/classifier_multiclass_shared.py
| |   M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclassmultipleoutputliblinear_modular.py
| |   M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| |   M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| |   M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| |   M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| |   M	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| |   M	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| |   M	examples/undocumented/python_modular/converter_isomap_modular.py
| |   M	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| |   M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| |   M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| |   M	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| |   M	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
| |   M	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| |   M	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| |   M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| |   M	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| |   M	examples/undocumented/python_modular/evaluation_clustering.py
| |   M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| |   M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   M	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
| |   M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| |   M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| |   M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| |   M	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| |   M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| |   M	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
| |   M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| |   M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| |   M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| |   M	examples/undocumented/python_modular/features_binned_dot_modular.py
| |   M	examples/undocumented/python_modular/features_dense_byte_modular.py
| |   M	examples/undocumented/python_modular/features_dense_longint_modular.py
| |   M	examples/undocumented/python_modular/features_dense_modular.py
| |   M	examples/undocumented/python_modular/features_dense_protocols_modular.py
| |   M	examples/undocumented/python_modular/features_dense_real_modular.py
| |   M	examples/undocumented/python_modular/features_dense_zero_copy_modular.py
| |   M	examples/undocumented/python_modular/features_io_modular.py
| |   M	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| |   M	examples/undocumented/python_modular/features_snp_modular.py
| |   M	examples/undocumented/python_modular/features_sparse_modular.py
| |   M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| |   M	examples/undocumented/python_modular/features_string_char_modular.py
| |   M	examples/undocumented/python_modular/features_string_file_char_modular.py
| |   M	examples/undocumented/python_modular/features_string_file_modular.py
| |   M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| |   M	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| |   M	examples/undocumented/python_modular/features_string_ulong_modular.py
| |   M	examples/undocumented/python_modular/features_string_word_modular.py
| |   M	examples/undocumented/python_modular/kernel_auc_modular.py
| |   M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| |   M	examples/undocumented/python_modular/kernel_combined_modular.py
| |   M	examples/undocumented/python_modular/kernel_fisher_modular.py
| |   M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| |   M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| |   M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| |   M	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| |   M	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| |   M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| |   M	examples/undocumented/python_modular/kernel_top_modular.py
| |   M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| |   M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| |   M	examples/undocumented/python_modular/library_time.py
| |   M	examples/undocumented/python_modular/mathematics_sparseinversecovariance_modular.py
| |   M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| |   M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| |   M	examples/undocumented/python_modular/modelselection_grid_search_krr_modular.py
| |   M	examples/undocumented/python_modular/modelselection_grid_search_liblinear_modular.py
| |   M	examples/undocumented/python_modular/modelselection_grid_search_libsvr_modular.py
| |   M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| |   M	examples/undocumented/python_modular/modelselection_random_search_liblinear_modular.py
| |   M	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| |   M	examples/undocumented/python_modular/preprocessor_kernelpca_modular.py
| |   M	examples/undocumented/python_modular/preprocessor_pca_modular.py
| |   M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| |   M	examples/undocumented/python_modular/regression_svrlight_modular.py
| |   M	examples/undocumented/python_modular/serialization_complex_example.py
| |   M	examples/undocumented/python_modular/serialization_matrix_modular.py
| |   M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| |   M	examples/undocumented/python_modular/so_multiclass.py
| |   M	examples/undocumented/python_modular/statistics_hsic.py
| |   M	examples/undocumented/python_modular/statistics_kmm.py
| |   M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| |   M	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| |   M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| |   M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| |   M	examples/undocumented/python_modular/streaming_vw_modular.py
| |   M	examples/undocumented/python_modular/structure_dynprog_modular.py
| |   M	examples/undocumented/python_modular/structure_hmsvm_bmrm.py
| |   M	examples/undocumented/python_modular/structure_hmsvm_mosek.py
| |   M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| |   M	examples/undocumented/python_modular/transfer_multitask_clustered_logistic_regression.py
| |   M	examples/undocumented/python_modular/transfer_multitask_l12_logistic_regression.py
| |   M	examples/undocumented/python_modular/transfer_multitask_leastsquares_regression.py
| |   M	examples/undocumented/python_modular/transfer_multitask_logistic_regression.py
| |   M	examples/undocumented/python_modular/transfer_multitask_trace_logistic_regression.py
| |   
* | commit feafbf761437cf479ee3e261a3a2ca8a62f65f6b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 29 19:42:17 2012 +0200
| | 
| |     - adjust regression -> integration in makefile
| |     - pull in new tutorial
| | 
| | M	src/Makefile.template
| |   
* | commit 550727e67c8ed360ddf91a2ac1219d84657c6591
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 29 19:29:15 2012 +0200
| | 
| |     rename regression test directory into integration tests to avoid
| |     confusion
| | 
| | A	tests/integration/README
| | A	tests/integration/cmdline_static/test.sg
| | A	tests/integration/cmdline_static/test_all.sh
| | A	tests/integration/data
| | A	tests/integration/generate_testdata.py
| | A	tests/integration/generator/__init__.py
| | A	tests/integration/generator/category.py
| | A	tests/integration/generator/classifier.py
| | A	tests/integration/generator/clustering.py
| | A	tests/integration/generator/dataop.py
| | A	tests/integration/generator/distance.py
| | A	tests/integration/generator/distribution.py
| | A	tests/integration/generator/featop.py
| | A	tests/integration/generator/fileop.py
| | A	tests/integration/generator/kernel.py
| | A	tests/integration/generator/preproc.py
| | A	tests/integration/generator/regression.py
| | A	tests/integration/libshogun/test_all.sh
| | A	tests/integration/lua_modular/generator.lua
| | A	tests/integration/matlab_and_octave/classifier.m
| | A	tests/integration/matlab_and_octave/clustering.m
| | A	tests/integration/matlab_and_octave/distance.m
| | A	tests/integration/matlab_and_octave/distribution.m
| | A	tests/integration/matlab_and_octave/kernel.m
| | A	tests/integration/matlab_and_octave/preprocessor.m
| | A	tests/integration/matlab_and_octave/regression.m
| | A	tests/integration/matlab_and_octave/test_all.sh
| | A	tests/integration/matlab_and_octave/test_one.sh
| | A	tests/integration/matlab_and_octave/util/check_accuracy.m
| | A	tests/integration/matlab_and_octave/util/convert_features_and_add_preproc.m
| | A	tests/integration/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_distance_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/fix_regression_name_inconsistency.m
| | A	tests/integration/matlab_and_octave/util/globals.m
| | A	tests/integration/matlab_and_octave/util/set_distance.m
| | A	tests/integration/matlab_and_octave/util/set_features.m
| | A	tests/integration/matlab_and_octave/util/set_kernel.m
| | A	tests/integration/matlab_and_octave/util/tobool.m
| | A	tests/integration/matlab_static
| | A	tests/integration/octave_modular/classifier.m
| | A	tests/integration/octave_modular/clustering.m
| | A	tests/integration/octave_modular/distance.m
| | A	tests/integration/octave_modular/distribution.m
| | A	tests/integration/octave_modular/kernel.m
| | A	tests/integration/octave_modular/preproc.m
| | A	tests/integration/octave_modular/regression.m
| | A	tests/integration/octave_modular/test_all.sh
| | A	tests/integration/octave_modular/test_one.sh
| | A	tests/integration/octave_modular/util/check_accuracy.m
| | A	tests/integration/octave_modular/util/convert_features_and_add_preproc.m
| | A	tests/integration/octave_modular/util/globals.m
| | A	tests/integration/octave_modular/util/set_distance.m
| | A	tests/integration/octave_modular/util/set_features.m
| | A	tests/integration/octave_modular/util/set_kernel.m
| | A	tests/integration/octave_modular/util/set_pie.m
| | A	tests/integration/octave_modular/util/set_pos_and_neg.m
| | A	tests/integration/octave_modular/util/tobool.m
| | A	tests/integration/octave_static
| | A	tests/integration/python_modular/README
| | A	tests/integration/python_modular/classifier.py
| | A	tests/integration/python_modular/clustering.py
| | A	tests/integration/python_modular/distance.py
| | A	tests/integration/python_modular/distribution.py
| | A	tests/integration/python_modular/generator.py
| | A	tests/integration/python_modular/kernel.py
| | A	tests/integration/python_modular/preprocessor.py
| | A	tests/integration/python_modular/regression.py
| | A	tests/integration/python_modular/test_all.sh
| | A	tests/integration/python_modular/test_one.py
| | A	tests/integration/python_modular/test_svm_kernel_multiple.py
| | A	tests/integration/python_modular/tester.py
| | A	tests/integration/python_modular/util.py
| | A	tests/integration/python_static/classifier.py
| | A	tests/integration/python_static/clustering.py
| | A	tests/integration/python_static/distance.py
| | A	tests/integration/python_static/distribution.py
| | A	tests/integration/python_static/kernel.py
| | A	tests/integration/python_static/preprocessor.py
| | A	tests/integration/python_static/regression.py
| | A	tests/integration/python_static/test_all.sh
| | A	tests/integration/python_static/test_one.py
| | A	tests/integration/python_static/test_svm_kernel_multiple.py
| | A	tests/integration/python_static/util.py
| | A	tests/integration/r_modular/classifier.R
| | A	tests/integration/r_modular/clustering.R
| | A	tests/integration/r_modular/distance.R
| | A	tests/integration/r_modular/distribution.R
| | A	tests/integration/r_modular/kernel.R
| | A	tests/integration/r_modular/preproc.R
| | A	tests/integration/r_modular/regression.R
| | A	tests/integration/r_modular/test_all.sh
| | A	tests/integration/r_modular/test_one.R
| | A	tests/integration/r_modular/test_one.sh
| | A	tests/integration/r_modular/util/check_accuracy.R
| | A	tests/integration/r_modular/util/convert_features_and_add_preproc.R
| | A	tests/integration/r_modular/util/get_distance.R
| | A	tests/integration/r_modular/util/get_features.R
| | A	tests/integration/r_modular/util/get_kernel.R
| | A	tests/integration/r_modular/util/get_pie.R
| | A	tests/integration/r_modular/util/get_posneg.R
| | A	tests/integration/r_modular/util/read_mfile.R
| | A	tests/integration/r_modular/util/tobool.R
| | A	tests/integration/r_static/classifier.R
| | A	tests/integration/r_static/clustering.R
| | A	tests/integration/r_static/distance.R
| | A	tests/integration/r_static/distribution.R
| | A	tests/integration/r_static/kernel.R
| | A	tests/integration/r_static/preprocessor.R
| | A	tests/integration/r_static/regression.R
| | A	tests/integration/r_static/test_all.sh
| | A	tests/integration/r_static/test_one.R
| | A	tests/integration/r_static/test_one.sh
| | A	tests/integration/r_static/util/check_accuracy.R
| | A	tests/integration/r_static/util/convert_features_and_add_preproc.R
| | A	tests/integration/r_static/util/fix_classifier_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_clustering_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_distance_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_kernel_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_normalizer_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_preproc_name_inconsistency.R
| | A	tests/integration/r_static/util/fix_regression_name_inconsistency.R
| | A	tests/integration/r_static/util/read_mfile.R
| | A	tests/integration/r_static/util/set_distance.R
| | A	tests/integration/r_static/util/set_features.R
| | A	tests/integration/r_static/util/set_kernel.R
| | A	tests/integration/r_static/util/tobool.R
| | A	tests/integration/test_configure.py
| | A	tests/integration/tests
| | D	tests/regression/README
| | D	tests/regression/cmdline_static/test.sg
| | D	tests/regression/cmdline_static/test_all.sh
| | D	tests/regression/data
| | D	tests/regression/generate_testdata.py
| | D	tests/regression/generator/__init__.py
| | D	tests/regression/generator/category.py
| | D	tests/regression/generator/classifier.py
| | D	tests/regression/generator/clustering.py
| | D	tests/regression/generator/dataop.py
| | D	tests/regression/generator/distance.py
| | D	tests/regression/generator/distribution.py
| | D	tests/regression/generator/featop.py
| | D	tests/regression/generator/fileop.py
| | D	tests/regression/generator/kernel.py
| | D	tests/regression/generator/preproc.py
| | D	tests/regression/generator/regression.py
| | D	tests/regression/libshogun/test_all.sh
| | D	tests/regression/lua_modular/generator.lua
| | D	tests/regression/matlab_and_octave/classifier.m
| | D	tests/regression/matlab_and_octave/clustering.m
| | D	tests/regression/matlab_and_octave/distance.m
| | D	tests/regression/matlab_and_octave/distribution.m
| | D	tests/regression/matlab_and_octave/kernel.m
| | D	tests/regression/matlab_and_octave/preprocessor.m
| | D	tests/regression/matlab_and_octave/regression.m
| | D	tests/regression/matlab_and_octave/test_all.sh
| | D	tests/regression/matlab_and_octave/test_one.sh
| | D	tests/regression/matlab_and_octave/util/check_accuracy.m
| | D	tests/regression/matlab_and_octave/util/convert_features_and_add_preproc.m
| | D	tests/regression/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_distance_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/fix_regression_name_inconsistency.m
| | D	tests/regression/matlab_and_octave/util/globals.m
| | D	tests/regression/matlab_and_octave/util/set_distance.m
| | D	tests/regression/matlab_and_octave/util/set_features.m
| | D	tests/regression/matlab_and_octave/util/set_kernel.m
| | D	tests/regression/matlab_and_octave/util/tobool.m
| | D	tests/regression/matlab_static
| | D	tests/regression/octave_modular/classifier.m
| | D	tests/regression/octave_modular/clustering.m
| | D	tests/regression/octave_modular/distance.m
| | D	tests/regression/octave_modular/distribution.m
| | D	tests/regression/octave_modular/kernel.m
| | D	tests/regression/octave_modular/preproc.m
| | D	tests/regression/octave_modular/regression.m
| | D	tests/regression/octave_modular/test_all.sh
| | D	tests/regression/octave_modular/test_one.sh
| | D	tests/regression/octave_modular/util/check_accuracy.m
| | D	tests/regression/octave_modular/util/convert_features_and_add_preproc.m
| | D	tests/regression/octave_modular/util/globals.m
| | D	tests/regression/octave_modular/util/set_distance.m
| | D	tests/regression/octave_modular/util/set_features.m
| | D	tests/regression/octave_modular/util/set_kernel.m
| | D	tests/regression/octave_modular/util/set_pie.m
| | D	tests/regression/octave_modular/util/set_pos_and_neg.m
| | D	tests/regression/octave_modular/util/tobool.m
| | D	tests/regression/octave_static
| | D	tests/regression/python_modular/README
| | D	tests/regression/python_modular/classifier.py
| | D	tests/regression/python_modular/clustering.py
| | D	tests/regression/python_modular/distance.py
| | D	tests/regression/python_modular/distribution.py
| | D	tests/regression/python_modular/generator.py
| | D	tests/regression/python_modular/kernel.py
| | D	tests/regression/python_modular/preprocessor.py
| | D	tests/regression/python_modular/regression.py
| | D	tests/regression/python_modular/test_all.sh
| | D	tests/regression/python_modular/test_one.py
| | D	tests/regression/python_modular/test_svm_kernel_multiple.py
| | D	tests/regression/python_modular/tester.py
| | D	tests/regression/python_modular/util.py
| | D	tests/regression/python_static/classifier.py
| | D	tests/regression/python_static/clustering.py
| | D	tests/regression/python_static/distance.py
| | D	tests/regression/python_static/distribution.py
| | D	tests/regression/python_static/kernel.py
| | D	tests/regression/python_static/preprocessor.py
| | D	tests/regression/python_static/regression.py
| | D	tests/regression/python_static/test_all.sh
| | D	tests/regression/python_static/test_one.py
| | D	tests/regression/python_static/test_svm_kernel_multiple.py
| | D	tests/regression/python_static/util.py
| | D	tests/regression/r_modular/classifier.R
| | D	tests/regression/r_modular/clustering.R
| | D	tests/regression/r_modular/distance.R
| | D	tests/regression/r_modular/distribution.R
| | D	tests/regression/r_modular/kernel.R
| | D	tests/regression/r_modular/preproc.R
| | D	tests/regression/r_modular/regression.R
| | D	tests/regression/r_modular/test_all.sh
| | D	tests/regression/r_modular/test_one.R
| | D	tests/regression/r_modular/test_one.sh
| | D	tests/regression/r_modular/util/check_accuracy.R
| | D	tests/regression/r_modular/util/convert_features_and_add_preproc.R
| | D	tests/regression/r_modular/util/get_distance.R
| | D	tests/regression/r_modular/util/get_features.R
| | D	tests/regression/r_modular/util/get_kernel.R
| | D	tests/regression/r_modular/util/get_pie.R
| | D	tests/regression/r_modular/util/get_posneg.R
| | D	tests/regression/r_modular/util/read_mfile.R
| | D	tests/regression/r_modular/util/tobool.R
| | D	tests/regression/r_static/classifier.R
| | D	tests/regression/r_static/clustering.R
| | D	tests/regression/r_static/distance.R
| | D	tests/regression/r_static/distribution.R
| | D	tests/regression/r_static/kernel.R
| | D	tests/regression/r_static/preprocessor.R
| | D	tests/regression/r_static/regression.R
| | D	tests/regression/r_static/test_all.sh
| | D	tests/regression/r_static/test_one.R
| | D	tests/regression/r_static/test_one.sh
| | D	tests/regression/r_static/util/check_accuracy.R
| | D	tests/regression/r_static/util/convert_features_and_add_preproc.R
| | D	tests/regression/r_static/util/fix_classifier_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_clustering_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_distance_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_kernel_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_normalizer_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_preproc_name_inconsistency.R
| | D	tests/regression/r_static/util/fix_regression_name_inconsistency.R
| | D	tests/regression/r_static/util/read_mfile.R
| | D	tests/regression/r_static/util/set_distance.R
| | D	tests/regression/r_static/util/set_features.R
| | D	tests/regression/r_static/util/set_kernel.R
| | D	tests/regression/r_static/util/tobool.R
| | D	tests/regression/test_configure.py
| | D	tests/regression/tests
| |   
* | commit 5398c6e00bb15b311b7f9e9fe79cd7dd429d11a8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 29 16:29:02 2012 +0200
| | 
| |     fix up clustering evaluation example
| |     
| |     - seperate minimal doc from code
| |     - turn it into a proper function to enable integration tests
| | 
| | M	data
| | A	examples/descriptions/modular/evaluation_clustering.txt
| | M	examples/undocumented/python_modular/evaluation_clustering.py
| |     
* |   commit c35b5eda91933b678008fc4df28abaf14d6f919a
|\ \  Merge: 3ec005c 68061ea
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 28 11:59:43 2012 -0700
| | | 
| | |     Merge pull request #759 from iglesias/master
| | |     
| | |     Fix compile errors in libshogun hmsvm mosek examples
| | |    
| * | commit 68061eaa4b9ba86d76e351f9a2bbe010fb81163d
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Tue Aug 28 17:59:47 2012 +0200
| | | 
| | |     * fix compile errors in libshogun hmsvm mosek examples
| | | 
| | | M	examples/undocumented/libshogun/so_hmsvm_mosek.cpp
| | | M	examples/undocumented/libshogun/so_hmsvm_mosek_simple.cpp
| | |      
* | |   commit 3ec005cbe1cb1473bfde468a92afd06de409cb5f
|\ \ \  Merge: b630803 dd46c66
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Tue Aug 28 11:53:15 2012 -0700
| | |   
| | |       Merge pull request #760 from karlnapf/master
| | |       
| | |       added a very basic kernel selection method based on median distances
| | |    
| * | commit dd46c66cb5872dd74a6963b6772782f5c1d8e5a3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 28 19:51:46 2012 +0100
| | | 
| | |     added a note about basic kernel selection in all MMD and HSIC methods
| | | 
| | | M	src/shogun/statistics/HSIC.h
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | |    
| * | commit 45e42aa97abf7d3b34e8e46faa07a3b4095be34d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 28 19:45:03 2012 +0100
| | | 
| | |     added basic kernel selection via median distance to all kernel-statistical-test-examples
| | | 
| | | M	examples/undocumented/python_modular/graphical/statistics_hsic.py
| | | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| | | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | M	examples/undocumented/python_modular/statistics_hsic.py
| | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | |    
| * | commit 8a217cf9aa24b43ff83847075ea622fdcd1246cd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 28 19:44:34 2012 +0100
| | | 
| | |     added randperm for SGVector
| | | 
| | | M	src/shogun/mathematics/Math.h
| | |    
| * | commit af92574e45c1a683a9a10fdcbf16522a16c6ecd7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 28 18:57:43 2012 +0100
| | | 
| | |     added test for median computation
| | | 
| | | M	examples/undocumented/libshogun/statistics.cpp
| | |    
| * | commit caec0faee2b6cf248d60498edc7ec78d9e285209
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 28 18:57:37 2012 +0100
| | | 
| | |     added new method to compute median
| | | 
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | |    
| * | commit 56fc67b44d34d6c4f54b1721f40598265880ddb1
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Aug 28 18:57:24 2012 +0100
| |   
| |       added register for swaps
| |   
| |   M	src/shogun/mathematics/Math.h
| |   
* | commit b630803aeca43b09a6e9ccb342205238a9e2e3c1
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 28 19:21:36 2012 +0400
| | 
| |     Renamed L1L2 to L12
| | 
| | A	examples/undocumented/python_modular/transfer_multitask_l12_logistic_regression.py
| | D	examples/undocumented/python_modular/transfer_multitask_l1l2_logistic_regression.py
| | M	src/interfaces/modular/Transfer.i
| | M	src/interfaces/modular/Transfer_includes.i
| | A	src/shogun/transfer/multitask/MultitaskL12LogisticRegression.cpp
| | A	src/shogun/transfer/multitask/MultitaskL12LogisticRegression.h
| | D	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | D	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| |   
* | commit 0e7695aee0b37bdb66ebc3658e3d9a980c3cdc3a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 27 01:39:17 2012 +0400
| | 
| |     Fixed csharp crasher with making sequence data protected
| | 
| | M	src/shogun/evaluation/StructuredAccuracy.cpp
| | M	src/shogun/structure/HMSVMLabels.h
| | M	src/shogun/structure/HMSVMModel.cpp
| | M	src/shogun/structure/TwoStateModel.cpp
| |   
* | commit 1468c7efce3108a214a67f015ed69d777b23f76e
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 23:57:49 2012 +0400
| | 
| |     Changed get binary for class method
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| |   
* | commit 334d713696fe459c4d6d7350e24cf2cf9a88f50c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 23:40:51 2012 +0400
| | 
| |     Added getter for sequence data
| | 
| | M	src/shogun/structure/HMSVMLabels.h
| |   
* | commit 408f357d61aced10e9298f8b021420273e163d78
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 23:31:03 2012 +0400
| | 
| |     A few updates for NEWS
| | 
| | M	src/NEWS
| |     
* |   commit e0696f4e4daab1dfa7dac749af862249d03b3234
|\ \  Merge: ad6f6dc 2433022
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Aug 26 12:09:58 2012 -0700
| | | 
| | |     Merge pull request #758 from Nightrain/testbranch
| | |     
| | |     fixed some words
| | |    
| * | commit 2433022deb31dc2a7cc4c3b5da8f2ce39188705d
|/ /  Author: Nightrain <SayapinSasha@gmail.com>
| |   Date:   Sun Aug 26 22:38:25 2012 +0400
| |   
| |       fixed some words
| |   
| |   M	src/interfaces/python_modular/DenseFeatures_protocols.i
| |   
* | commit ad6f6dc786e47fb7bd21a611ba7cdeaf3b801830
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 12:58:09 2012 +0400
| | 
| |     Marked string kernels failing on regression tests as unstable
| | 
| | M	src/shogun/kernel/string/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/string/OligoStringKernel.cpp
| | M	src/shogun/kernel/string/SimpleLocalityImprovedStringKernel.cpp
| |   
* | commit d1d57a16cedc286a172c95a585fb54745db7880a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 12:44:13 2012 +0400
| | 
| |     Removed scaling in multiclass tree guided LR
| | 
| | M	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| |   
* | commit 4a9f48541313d5ed7be7b49b0309b2d9d7833576
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 12:43:30 2012 +0400
| | 
| |     Fixed memory handlnig in CV MC storage
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.h
| |   
* | commit 84fe14ce055839340200fed5ad58da9efd4dcd23
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 12:42:09 2012 +0400
| | 
| |     Fixed naming in R regression preprocessor test
| | 
| | M	tests/regression/r_static/preprocessor.R
| |   
* | commit f6aaf0009ae5e2e1a5b3b35810d7ad756c3ddfd1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 26 07:07:08 2012 +0200
| | 
| |     return none when numpy version etc is not sufficiently new
| | 
| | M	examples/undocumented/python_modular/features_dense_protocols_modular.py
| |   
* | commit 27c7dd2817a7c8cf97e5c56e098274ea23fdb2fc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 02:58:53 2012 +0400
| | 
| |     Added confidence matrix computation abilities to CV MC storage and
| |     made everything optional
| | 
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.h
| |     
* |   commit 65ad845f688d851a401b283938c72fb6fea8ffbf
|\ \  Merge: b35dbe8 ab6a200
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Aug 25 15:54:17 2012 -0700
| | | 
| | |     Merge pull request #757 from gsomix/buffer_protocol
| | |     
| | |     Buffer protocol
| | |    
| * | commit ab6a200d53b303cb614688be2f60db9df5b210c6
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sun Aug 26 01:41:18 2012 +0400
| | | 
| | |     protocols for CustomKernel
| | | 
| | | M	src/interfaces/modular/Kernel.i
| | | A	src/interfaces/python_modular/CustomKernel_protocols.i
| | | M	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | M	src/interfaces/python_modular/DenseLabels_protocols.i
| | | M	src/interfaces/python_modular/SGVector_protocols.i
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| * | commit ab15b5fcbd66c2f1c0aa70c75cb884dc808b419d
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sun Aug 19 12:49:09 2012 +0400
| | | 
| | |     added example for DirectorDotFeatures
| | | 
| | | A	examples/undocumented/python_modular/features_director_dot_modular.py
| | |    
* | | commit b35dbe86457c3344630d43113478fc0e39ea06e8
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Aug 26 02:10:45 2012 +0400
| | | 
| | |     Added MKL multiclass handling in CV print output
| | | 
| | | M	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| | |    
* | | commit 9429c0e22614132f9e701bd4a8ff439da9969b6e
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Aug 26 02:07:16 2012 +0400
| | | 
| | |     Added handling of multiclass MKL machine in MKL storage
| | | 
| | | M	src/shogun/evaluation/CrossValidationMKLStorage.cpp
| | |    
* | | commit 56d4a32564f74aac11555e7d552d3e9451999a34
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Sun Aug 26 01:57:44 2012 +0400
| |   
| |       Extended CV MC storage more
| |   
| |   M	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| |   M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| |   M	src/shogun/evaluation/CrossValidationMulticlassStorage.h
| |   
* | commit d30bf9eb2dcbc8d070e730b02e25ea07dc02851b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 00:13:42 2012 +0400
| | 
| |     Restored DA multiclass liblinear
| | 
| | M	src/interfaces/modular/Transfer.i
| | M	src/interfaces/modular/Transfer_includes.i
| |   
* | commit 8be38323f2dc590295a2913cc5fc944d1fc1333c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Aug 26 00:13:29 2012 +0400
| | 
| |     Added DirectorStructuredModel and its multiclass example
| | 
| | A	examples/undocumented/python_modular/graphical/so_multiclass_director_BMRM.py
| | M	src/interfaces/modular/Structure.i
| | M	src/interfaces/modular/Structure_includes.i
| | A	src/shogun/structure/DirectorStructuredModel.cpp
| | A	src/shogun/structure/DirectorStructuredModel.h
| | M	src/shogun/structure/StructuredModel.h
| |   
* | commit 07a2e026a31caa15f271228f310d02456f900a2b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 22:00:42 2012 +0400
| | 
| |     Changed the way eigen3 is included to avoid warnings
| | 
| | M	src/configure
| |   
* | commit d83d60873363f1fcbb512483d75d1dd119bd2721
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 14:32:57 2012 +0400
| | 
| |     Updated R tester function name
| | 
| | M	tests/regression/r_static/preprocessor.R
| |   
* | commit 09feff0a9688d5c3be8b012c98e24af95ca683fd
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 14:27:53 2012 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 66f09d487bf4e6a51e25c1b6d48902a71c894779
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 13:47:14 2012 +0400
| | 
| |     Removed prints from python examples
| | 
| | M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| | M	examples/undocumented/python_modular/classifier_multiclassmultipleoutputliblinear_modular.py
| |   
* | commit 60158833c2bde8623ba26f6df18d77e00b69095a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 13:40:35 2012 +0400
| | 
| |     Removed junk from multiclass storage
| | 
| | M	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| |   
* | commit 14813d7c1c4b477197d39a201253e9e917900a96
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 13:34:30 2012 +0400
| | 
| |     Updated binary for class method in multiclass labels to use confidences
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| |   
* | commit cfc8322b6614446b5dc28ba2faa4663ed4779449
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 25 01:43:09 2012 +0400
| | 
| |     Introduced CV MC storage
| | 
| | A	examples/undocumented/python_modular/evaluation_cross_validation_multiclass_storage.py
| | M	src/interfaces/modular/Evaluation.i
| | M	src/interfaces/modular/Evaluation_includes.i
| | M	src/shogun/evaluation/CrossValidation.cpp
| | A	src/shogun/evaluation/CrossValidationMulticlassStorage.cpp
| | A	src/shogun/evaluation/CrossValidationMulticlassStorage.h
| | M	src/shogun/evaluation/CrossValidationOutput.h
| | M	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| |   
* | commit cbc0150410f47c6dddef4b8488ed662ec969840c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Aug 24 22:06:52 2012 +0400
| | 
| |     Changed type of loop variable in StructuredModel
| | 
| | M	src/shogun/structure/StructuredModel.cpp
| |   
* | commit d50e29742ed0d6f98e7db3cca3c6688aca7bb904
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Fri Aug 24 19:44:37 2012 +0400
| | 
| |     Ignored SGVector operator+ and operator+=
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |     
* |   commit 2f3688a267e0f0058d3d5997e0b32626e82875e6
|\ \  Merge: 093b502 ba02284
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Aug 24 07:09:56 2012 -0700
| | | 
| | |     Merge pull request #753 from pluskid/multiclass
| | |     
| | |     tie-breaking by decision values in One-vs-One.
| | |    
| * | commit ba02284254adf5711cf02f7e2da2c8d6536c59cb
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 22 21:18:55 2012 +0800
| | | 
| | |     tie-breaking by decision values in One-vs-One.
| | | 
| | | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | |      
* | |   commit 093b5028c6e08186f90d8f9ba3f859b64c8f55dc
|\ \ \  Merge: 10341ca 0a2700a
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 24 07:02:24 2012 -0700
| | | | 
| | | |     Merge pull request #756 from iglesias/master
| | | |     
| | | |     Fix memory leaks in BMRM and fix the generic risk function
| | | |     
| * | | commit 0a2700a2a4396f88da1cf3daa2124f2a78c30a9b
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Aug 24 15:38:36 2012 +0200
| | | | 
| | | |     ~ score computation in argmax methods updated
| | | | 
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | |     
| * | | commit 5219a5a6f5816dbb86b1e2eee86993675cd26024
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Aug 24 15:37:42 2012 +0200
| | | | 
| | | |     ~ doc updated
| | | | 
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | M	src/shogun/structure/StructuredModel.h
| | | |     
| * | | commit 850ce8394ec4c9de7d9ab194260f179331b03a97
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Aug 23 17:14:09 2012 +0200
| | | | 
| | | |     * fix errors in StructuredModel::risk
| | | | 
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | |     
| * | | commit 8423eba8578127de47bc58aec9bca8a6a8eb088c
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Aug 23 17:13:29 2012 +0200
| | | | 
| | | |     ~ MulticlassModel::argmax returns the true score instead of score+delta
| | | | 
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | |     
| * | | commit cbe8a3ff130d13cb15a034a6e8dcca8952b98df2
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Aug 23 16:09:39 2012 +0200
| | | | 
| | | |     * fix memory leak. Use SGVector constructor instead of resize for first time allocation
| | | | 
| | | | M	src/shogun/structure/libbmrm.cpp
| | | |     
| * | | commit 8f3cc0ef6070e014b2eb1e7f90b872a1290b5bdb
|/ / /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |   Date:   Thu Aug 23 15:43:28 2012 +0200
| | |   
| | |       * fix memory leak caused by CStructuredLabels::get_label call without SG_UNREF
| | |   
| | |   M	src/shogun/structure/MulticlassModel.cpp
| | |    
* | | commit 10341ca38826a8f8544c6372df1481838745bdd1
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 23 19:29:04 2012 +0200
| | | 
| | |     Minor warning fix.
| | | 
| | | M	src/interfaces/modular/Machine.i
| | | M	src/shogun/multiclass/MulticlassSVM.h
| | |      
* | |   commit 00d3056843d2cace484e996709593768a1a4446b
|\ \ \  Merge: dea19d8 764509e
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Thu Aug 23 07:27:44 2012 -0700
| | | | 
| | | |     Merge pull request #755 from thereisnoknife/master
| | | |     
| | | |     update src/shogun/CmakeLists.txt
| | | |     
| * | | commit 764509ed90d698122a938a11e3be4822b8468d3a
| | | | Author: thereisnoknife <thereisnoknife@gmail.com>
| | | | Date:   Thu Aug 23 16:09:18 2012 +0200
| | | | 
| | | |     update src/shogun/CMakeLists.txt
| | | | 
| | | | M	src/shogun/CMakeLists.txt
| | | |     
| * | | commit 800c8454cb265b296058a778729b060afc8d0436
|/ / /  Author: thereisnoknife <thereisnoknife@gmail.com>
| | |   Date:   Thu Aug 23 16:04:02 2012 +0200
| | |   
| | |       update src/shogun/CMakeLists.txt
| | |   
| | |   M	src/shogun/CMakeLists.txt
| | |      
* | |   commit dea19d8a5d6288e3ddcc789d165aed6b608656cc
|\ \ \  Merge: 33a0869 f1a5b95
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Aug 22 23:40:24 2012 -0700
| | | | 
| | | |     Merge pull request #754 from uricamic/BM_SOL_EXAMPLE
| | | |     
| | | |     BMRM libshogun example fix (runnable without cmd arguments)
| | | |     
| * | | commit f1a5b95302fbbc571597e25b4155cf568096f28a
| | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | Date:   Wed Aug 22 23:18:30 2012 +0200
| | | | 
| | | |     so_multiclass_BMRM.py fix
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/so_multiclass_BMRM.py
| | | |     
| * | | commit 3713c0cc4c6241891c29a52a48d7077f680f8240
|/ / /  Author: Michal Uricar <uricar.michal@gmail.com>
| | |   Date:   Wed Aug 22 23:08:04 2012 +0200
| | |   
| | |       BMRM libshogun example fix (runnable without cmd arguments)
| | |   
| | |   M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | |    
* | | commit 33a0869221d5cf7784b3437e469f952bcb1a1f8a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 22 21:30:18 2012 +0400
| | | 
| | |     Renamed m_kernel parameter
| | | 
| | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | M	src/shogun/machine/KernelMulticlassMachine.h
| | |    
* | | commit 90d44242346ac3130ed127cf1ef6c1fde623c85b
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Wed Aug 22 19:19:48 2012 +0400
| |   
| |       Refactored multiclass machines to support C parameter selection
| |   
| |   M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| |   M	src/shogun/machine/KernelMulticlassMachine.h
| |   M	src/shogun/multiclass/GMNPSVM.cpp
| |   M	src/shogun/multiclass/LaRank.cpp
| |   M	src/shogun/multiclass/MulticlassLibSVM.cpp
| |   M	src/shogun/multiclass/MulticlassSVM.cpp
| |   M	src/shogun/multiclass/MulticlassSVM.h
| |   M	src/shogun/multiclass/ScatterSVM.cpp
| |   M	src/shogun/ui/GUIClassifier.cpp
| |   
* | commit 2f999e4f171ee90175c03af23f3d04da45acfca1
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 16:48:04 2012 +0400
| | 
| |     Update examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | 
| | M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| |     
* |   commit 8cec5d0b9bb7e5248e1eefaf802a852b6bd7c4f3
|\ \  Merge: 50ba31c bbb3457
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 22 05:32:55 2012 -0700
| | | 
| | |     Merge pull request #752 from iglesias/master
| | |     
| | |     Loss included in multiclass argmax
| | |    
| * | commit bbb3457ff41b61db96f9941acf6a72cfae9eccd9
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Aug 22 14:26:49 2012 +0200
| | | 
| | |     * wrong looop initialization
| | | 
| | | M	src/shogun/structure/MulticlassModel.cpp
| | |    
| * | commit 80f82b577a31ddad949c1eafbd372e271d4432b5
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Aug 22 14:03:13 2012 +0200
| | | 
| | |     + extension in so_multiclass example and * fix in multiclass BMRM
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/so_multiclass.cpp
| | | M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | |    
| * | commit 1a87bf0e969a573b7db77c6243542751934bbc86
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Wed Aug 22 14:01:37 2012 +0200
| |   
| |       * fix MulticlassModel argmax, the loss must be included in training to find the MMV
| |   
| |   M	src/shogun/structure/MulticlassModel.cpp
| |   M	src/shogun/structure/MulticlassModel.h
| |   M	src/shogun/structure/StructuredModel.cpp
| |   
* | commit 50ba31c913d6bc75ce6a3794ecd64693a418ae59
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 15:13:52 2012 +0400
| | 
| |     Removed redundant loss in generic risk
| | 
| | M	src/shogun/structure/StructuredModel.cpp
| |   
* | commit 6d43e987c80ef2acadbaa03b4291b8d2432f8ce7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 22 11:43:24 2012 +0200
| | 
| |     include lib/config.h when checking for a DEFINE_TO_BE_SET
| | 
| | M	src/shogun/features/DataGenerator.cpp
| |   
* | commit 5347c307d2a6ad6a0eb198d07908f6d3e1e897b1
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 13:12:25 2012 +0400
| | 
| |     Added missed latent problem handling in apply of machine
| | 
| | M	src/shogun/machine/Machine.cpp
| |     
* |   commit 8122bd8d336d64e712b05deadcaf6c9369221c67
|\ \  Merge: 157fba3 b985ee1
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 22 01:23:41 2012 -0700
| | | 
| | |     Merge pull request #751 from iglesias/master
| | |     
| | |     fix compilation error with MOSEK support
| | |    
| * | commit b985ee152e8881dcc0018c5962ecccfd38b4a12f
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Wed Aug 22 10:01:04 2012 +0200
| |   
| |       * fix compilation error with MOSEK support
| |   
| |   M	src/shogun/structure/PrimalMosekSOSVM.cpp
| |   
* | commit 157fba3b7cb6ebe2c5d63ce83cb39b15be600a4c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 10:58:32 2012 +0400
| | 
| |     An attempt to ignore display methods of SG datatypes
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 40564ac5517d00a5866b5ab62b4a5c51ec936f43
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 10:52:00 2012 +0400
| | 
| |     Added missed lambda usage in LatentSOSVM
| | 
| | M	src/shogun/latent/LatentSOSVM.cpp
| |   
* | commit cf43532de5c1435bee470990d6288203da58bcd6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 09:43:31 2012 +0400
| | 
| |     Fixed compilation of data generator in case of no lapack available
| | 
| | M	src/shogun/features/DataGenerator.cpp
| | M	src/shogun/features/DataGenerator.h
| |   
* | commit d6b3a7db3e54a2a69c61275349decab0b9500800
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 03:29:20 2012 +0400
| | 
| |     Refactored apply of latent machines
| | 
| | M	src/interfaces/modular/Machine.i
| | M	src/shogun/latent/LatentSOSVM.cpp
| | M	src/shogun/latent/LatentSOSVM.h
| | M	src/shogun/latent/LatentSVM.cpp
| | M	src/shogun/latent/LatentSVM.h
| | M	src/shogun/machine/LinearLatentMachine.cpp
| | M	src/shogun/machine/LinearLatentMachine.h
| | M	src/shogun/machine/Machine.cpp
| | M	src/shogun/machine/Machine.h
| |   
* | commit 416d36007c3cf60d1fbf6cf647435031e35d6ace
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 02:51:33 2012 +0400
| | 
| |     Doc fixes
| | 
| | M	src/shogun/multiclass/tree/VwConditionalProbabilityTree.h
| | M	src/shogun/structure/DualLibQPBMSOSVM.h
| |   
* | commit ff37c90b9d6c44100cc73e4e95259e29fdbc9cbb
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 02:41:41 2012 +0400
| | 
| |     Updated PrimalMosekSOSVM
| | 
| | M	examples/undocumented/python_modular/so_multiclass.py
| | M	examples/undocumented/python_modular/structure_hmsvm_mosek.py
| | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | M	src/shogun/structure/PrimalMosekSOSVM.h
| | M	src/shogun/structure/libbmrm.h
| |   
* | commit f253152bf63b35e27754c1b7bc667720d2cbd534
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 02:12:58 2012 +0400
| | 
| |     Improved multiclass tree guided logistic regression
| | 
| | M	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| | M	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.cpp
| |   
* | commit 45840d75c40f17594b56e16ce4ccf401b89e8d7f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 02:11:59 2012 +0400
| | 
| |     Refactored SO machine to not use its own features reference, fixed generic risk and bmrm result type
| | 
| | M	examples/undocumented/python_modular/graphical/so_multiclass_BMRM.py
| | A	examples/undocumented/python_modular/structure_hmsvm_bmrm.py
| | M	src/interfaces/modular/modshogun_ignores.i
| | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | M	src/shogun/structure/StructuredModel.cpp
| | M	src/shogun/structure/libbmrm.cpp
| | M	src/shogun/structure/libbmrm.h
| | M	src/shogun/structure/libp3bm.cpp
| | M	src/shogun/structure/libppbm.cpp
| |   
* | commit 530155d60668c423ad2cbcaeac8e54e30d6de31f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 22 00:35:28 2012 +0400
| | 
| |     Added generic risk function implementation for structured model class
| | 
| | M	src/shogun/structure/StructuredModel.cpp
| |   
* | commit 6d6770be70785b067048a34eb46f170a27c431bd
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 21 23:16:56 2012 +0400
| | 
| |     Removal for last multiclass warnings
| | 
| | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | M	src/shogun/multiclass/tree/VwConditionalProbabilityTree.h
| |     
* |   commit 4cbdfa4b0a4b879741d06260b892a93299f6237c
|\ \  Merge: 4ec5ff5 2590cf5
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 21 07:48:02 2012 -0700
| | | 
| | |     Merge pull request #750 from pluskid/multiclass
| | |     
| | |     added doc to kill warnings
| | |    
| * | commit 2590cf5847fdc5fc166ec5c07c2182493406c89f
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Aug 21 21:27:22 2012 +0800
| | | 
| | |     added doc to disable warning.
| | | 
| | | M	src/shogun/features/DenseSubsetFeatures.h
| | | M	src/shogun/machine/BaseMulticlassMachine.h
| | | M	src/shogun/multiclass/ShareBoostOptimizer.h
| | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.h
| | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | M	src/shogun/multiclass/tree/VwConditionalProbabilityTree.h
| | |    
* | | commit 4ec5ff516ecee8701eb2fe545a382dc20066d29e
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 21 17:08:35 2012 +0400
| | | 
| | |     Updated LatentSOSVM apply doc causing warning
| | | 
| | | M	src/shogun/latent/LatentSOSVM.h
| | |    
* | | commit d5c67f9a1bf66a498a38a3bbd6c1849f9055d9d1
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 21 16:40:23 2012 +0400
| | | 
| | |     Updated doc of LatentSOSVM
| | | 
| | | M	src/shogun/latent/LatentSOSVM.h
| | |    
* | | commit 8d0d4e2d40451ebda638aa2238607f2d9f58de02
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Tue Aug 21 16:36:54 2012 +0400
| |   
| |       Updated doc of IndexBlockGroup
| |   
| |   M	src/shogun/lib/IndexBlockGroup.h
| |   
* | commit 2a89ec12acb3c5946ec5c726ad3794bebba3e1d6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 21 14:08:37 2012 +0400
| | 
| |     Removed Math class reference in doc to avoid warnings
| | 
| | M	src/shogun/structure/StateModel.h
| |   
* | commit f9ca4a4b08051af27618c318e873cf5c189ad900
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 21 14:03:40 2012 +0400
| | 
| |     Added doc for MultitaskLeastSquaresRegression
| | 
| | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| |   
* | commit 64f1532c434477800eebe8efc6108f32b39e90b5
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 21 13:54:38 2012 +0400
| | 
| |     Added get_last_subset doc
| | 
| | M	src/shogun/features/SubsetStack.h
| |   
* | commit 3a54e3f16b4f147bcd0d357b0354ae503e0d27b0
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 21 11:57:34 2012 +0400
| | 
| |     Updated doc of FeatureBlockLogisticRegression
| | 
| | M	src/shogun/classifier/FeatureBlockLogisticRegression.h
| |   
* | commit 59d6cc7b5138c3bd93cfd87cb0302b20f9139837
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 21 01:38:05 2012 +0200
| | 
| |     move graphical example to graphical dir
| | 
| | A	examples/undocumented/python_modular/graphical/so_multiclass_BMRM.py
| | D	examples/undocumented/python_modular/so_multiclass_BMRM.py
| |   
* | commit b7c988695ce774f982b4967d744a2ffa2cbe2725
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 21 00:52:09 2012 +0200
| | 
| |     ignore bmrm_return_value_T in modular interfaces
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit ba48168eccf8c926dcf518262104c549f02b969f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 23:00:56 2012 +0400
| | 
| |     Ignored bmrm result to avoid java build failure
| | 
| | M	src/shogun/structure/libbmrm.h
| |   
* | commit b5a11f47f75e7b2fa8444cac1438a61ead2f2f76
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 21:57:46 2012 +0400
| | 
| |     A few more documentation warnings removed
| | 
| | M	src/shogun/lib/IndexBlock.h
| | M	src/shogun/lib/IndexBlockTree.h
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
| | M	src/shogun/multiclass/MulticlassStrategy.h
| | M	src/shogun/multiclass/tree/ConditionalProbabilityTreeNodeData.h
| | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | M	src/shogun/transfer/multitask/MultitaskCompositeMachine.h
| | M	src/shogun/transfer/multitask/MultitaskLinearMachine.h
| |     
* |   commit f72c53389daf360a973ac61ca16be67a3d634759
|\ \  Merge: d42a249 e265962
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Aug 20 10:26:56 2012 -0700
| | | 
| | |     Merge pull request #749 from uricamic/BM_SOL_EXAMPLE
| | |     
| | |     BMRM memory leaks fixes + update of BMRM python example
| | |    
| * | commit e265962923bfc90346285e7bf4bfa249c376789c
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Mon Aug 20 19:18:24 2012 +0200
| | | 
| | |     python BMRM example updated
| | | 
| | | M	examples/undocumented/python_modular/so_multiclass_BMRM.py
| | |    
| * | commit fac943db0ba6734e7f663ea24026da47e584c437
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Mon Aug 20 18:50:03 2012 +0200
| | | 
| | |     Memory leak fixes + history of Fp, Fd and wdist in solvers
| | | 
| | | M	src/interfaces/modular/modshogun_ignores.i
| | | M	src/shogun/structure/libbmrm.cpp
| | | M	src/shogun/structure/libbmrm.h
| | | M	src/shogun/structure/libp3bm.cpp
| | | M	src/shogun/structure/libppbm.cpp
| | |    
| * | commit 851b9d66a23e162f51acb463f3c6e33b214ef944
|/ /  Author: Michal Uricar <uricar.michal@gmail.com>
| |   Date:   Sun Aug 19 17:34:44 2012 +0200
| |   
| |       P3BMRM memory deallocation fix + doxygen warnings fix
| |   
| |   M	src/shogun/structure/libp3bm.cpp
| |   
* | commit d42a249a0746e519265cda2d4d1b4d15afeab634
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 21:01:24 2012 +0400
| | 
| |     Yet more documentation
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/multiclass/tree/TreeMachine.h
| | M	src/shogun/structure/StateModel.h
| |   
* | commit f2b055df1491208140178e646c718c223fe8cd7c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 18:23:13 2012 +0400
| | 
| |     Added doc for CrossValidation members
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| |   
* | commit 9867dc8ac68f6e2491e3bfd8290a5b5b2cd96fc8
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 18:16:09 2012 +0400
| | 
| |     Updated parameter name in doc of DualLibQPBMSOSVM
| | 
| | M	src/shogun/structure/DualLibQPBMSOSVM.h
| |   
* | commit f557f7328d1018199a46d65e0280103bf8eb62e4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 18:04:48 2012 +0400
| | 
| |     Added OVR strategy doc
| | 
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| |   
* | commit 95245143c6e9c41e23185132af145ad6caf8d83d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 20 14:42:38 2012 +0200
| | 
| |     fix the gp example
| | 
| | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| |     
* |   commit 55cf7c108df8d706fdd0551067e93f6c8301a664
|\ \  Merge: 8f632f5 ed7968a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Aug 20 05:22:02 2012 -0700
| | | 
| | |     Merge pull request #748 from iglesias/so
| | |     
| | |     * fix warning for unused variable noise_std
| | |    
| * | commit ed7968add20d4cad277250abca810750b648b859
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Mon Aug 20 14:10:43 2012 +0200
| |   
| |       * fix warning for unused variable noise_std
| |   
| |   M	src/shogun/structure/TwoStateModel.cpp
| |   
* | commit 8f632f5e7d1f3d6c4fce35dca0364476eaa50fc7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 20 13:01:13 2012 +0200
| | 
| |     move documentation of GP example into extra file and modify it to be a
| |     function catching the importerror in case of eigen3 being unavailable
| | 
| | A	examples/descriptions/regression_gaussian_process_modular.txt
| | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| |     
* |   commit dd207ccfe7a083e99b8a9c5d497348bc5006dfa5
|\ \  Merge: d3768a4 1b6419d
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Aug 20 02:58:43 2012 -0700
| | | 
| | |     Merge pull request #747 from iglesias/so
| | |     
| | |     * bug fix:
| | |    
| * | commit 1b6419d54b329dd6d28e48bb2494a32a3d4b5354
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Mon Aug 20 11:24:24 2012 +0200
| |   
| |       * bug fix: the features were not set in the model when they were changed in the SOMachine
| |   
| |   M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| |   
* | commit d3768a483bda1e74c535ff2e9faee96fa017678c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 20 09:32:18 2012 +0200
| | 
| |     add dummy main() function to not let example fail when eigen3 is unavailable
| | 
| | M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
| |   
* | commit 119258de9abc4a4d09e05477faa617150e470f47
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 03:05:38 2012 +0400
| | 
| |     Added doc for multiple output labels
| | 
| | M	src/shogun/labels/MulticlassMultipleOutputLabels.h
| |   
* | commit e6d559b39fc9b6fde43c8aae45f8ec5383abde74
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 03:00:02 2012 +0400
| | 
| |     Fix for GP laplace example
| | 
| | M	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| |   
* | commit 0a5ac3414f0e7efab24bc7104b1f6bbaf17130c2
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:59:15 2012 +0400
| | 
| |     Provided empty implementation of main in regression GP examples requiring eigen3
| | 
| | M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| |   
* | commit 72f0baaeb601fb94aad95f82fb1d9de815aff6a4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:54:03 2012 +0400
| | 
| |     Added some doc for multitask logistic regression
| | 
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| |   
* | commit 75eeb95e23c82b8acb20724d132c94d8e60a3453
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:50:20 2012 +0400
| | 
| |     Ignored brent headers for doxygen
| | 
| | M	src/shogun/lib/external/brent.h
| |   
* | commit f81d269adf70dd4f1adc4b0fe377e50f612c717b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:48:36 2012 +0400
| | 
| |     Updated include of GP regression
| | 
| | M	src/interfaces/modular/Regression.i
| | M	src/interfaces/modular/Regression_includes.i
| |   
* | commit c2733927b44cf19b568d8236d990a281be5e8912
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:45:03 2012 +0400
| | 
| |     Fixed java compilation issue with IndexBlockTree via adding new useful supernode parameter
| | 
| | M	src/shogun/lib/IndexBlockTree.cpp
| | M	src/shogun/lib/IndexBlockTree.h
| |   
* | commit 119aa6637af678c2414a214472c0d111886f4cbc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:44:02 2012 +0400
| | 
| |     Flattened brent namespace
| | 
| | M	src/shogun/lib/external/brent.cpp
| | M	src/shogun/lib/external/brent.h
| | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| |   
* | commit ad9debd7e38143bc996c95bfd816d32f67840592
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 02:21:42 2012 +0400
| | 
| |     Guarded examples
| | 
| | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
| |   
* | commit 6b01d982667c317ed1d316a300e334c504c3707d
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 01:43:45 2012 +0400
| | 
| |     Finally guarded all gp classes in case of eigen3 absence
| | 
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/GaussianProcessRegression.h
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| | M	src/shogun/regression/gp/InferenceMethod.h
| |   
* | commit b5b6055ea5a2d47b01cb1b2da376938185b74281
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 01:18:14 2012 +0400
| | 
| |     Guarded GaussianLikelihood for eigen3 absensew
| | 
| | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| |   
* | commit 5f04fd5b75d3720f8dfd85191077926a98725c87
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 00:59:12 2012 +0400
| | 
| |     More eigen3 guards for GP classes
| | 
| | M	src/shogun/regression/gp/LikelihoodModel.cpp
| | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| |   
* | commit 090995dcd9da52e7f67b286a32ecff4764261532
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Aug 20 00:16:07 2012 +0400
| | 
| |     Guarded GP classes in case of no eigen available
| | 
| | M	src/shogun/regression/gp/GaussianLikelihood.h
| | M	src/shogun/regression/gp/LikelihoodModel.h
| | M	src/shogun/regression/gp/StudentsTLikelihood.h
| |     
* |   commit 054373dc94a454daaec11786baff40418e4ab197
|\ \  Merge: bc5961c 8bcb6d6
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Sun Aug 19 12:30:07 2012 -0700
| |   
| |       Merge pull request #707 from puffin444/master
| |       
| |       Final Features
| |     
| *   commit 8bcb6d6939b90137fe0bcc460587d6b1e8c8ffd4
| |\  Merge: f99819c 38dac45
| | | Author: puffin444 <walke434@gmail.com>
| | | Date:   Sun Aug 19 11:56:37 2012 -0400
| | | 
| | |     Merge branch.
| | |     Merge branch 'master' of https://github.com/puffin444/shogun
| | |     
| | |     Conflicts:
| | |     	src/shogun/evaluation/GradientCriterion.h
| | |     	src/shogun/evaluation/MachineEvaluation.h
| | |     	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | |     	src/shogun/regression/gp/GaussianLikelihood.cpp
| | |    
| | * commit 38dac4537f65091f89839dc5d158b58773afe8f2
| | | Author: root <root@gs12672-vm.sp.cs.cmu.edu>
| | | Date:   Sun Aug 19 11:22:02 2012 -0400
| | | 
| | |     Fixed a few bugs, put dlgamma in its proper place.
| | | 
| | | M	src/shogun/lib/external/brent.cpp
| | | A	src/shogun/lib/external/brent.h
| | | D	src/shogun/lib/external/brent.hpp
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | |    
| | * commit 6ad6903487ef6311f1a97b2bce62e07a673a58ed
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Mon Aug 13 03:01:10 2012 -0500
| | | 
| | |     lized Laplacian Inference Method, Student's T Likelihood Model,
| | |     Added Scale parameter to FITC Method. Added Laplacian Inference Example.
| | |     Fixed Doxgyen warnings and added new code to modular interface.
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| | | M	src/interfaces/modular/Regression.i
| | | M	src/interfaces/modular/Regression_includes.i
| | | M	src/shogun/base/Parameter.h
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | M	src/shogun/evaluation/EvaluationResult.h
| | | M	src/shogun/evaluation/GradientCriterion.h
| | | M	src/shogun/evaluation/GradientEvaluation.h
| | | M	src/shogun/evaluation/GradientResult.h
| | | M	src/shogun/evaluation/MachineEvaluation.h
| | | M	src/shogun/kernel/CombinedKernel.h
| | | M	src/shogun/kernel/GaussianARDKernel.h
| | | M	src/shogun/kernel/GaussianKernel.h
| | | M	src/shogun/kernel/Kernel.h
| | | M	src/shogun/kernel/LinearARDKernel.h
| | | M	src/shogun/kernel/ProductKernel.h
| | | M	src/shogun/modelselection/GradientModelSelection.h
| | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | M	src/shogun/modelselection/ModelSelection.h
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | M	src/shogun/regression/gp/LikelihoodModel.cpp
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | |      
| | *   commit bc52993d81dc617cd171927876b5c15674befab1
| | |\  Merge: 37a1d0f bcb9792
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Fri Aug 10 22:56:21 2012 -0500
| | | | 
| | | |     Merge branch 'master' of https://github.com/puffin444/shogun
| | | |     
| | | |     Conflicts:
| | | |     	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | |     	src/shogun/regression/gp/GaussianLikelihood.h
| | | |     	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | |     	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | |     	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | |     	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| | | * commit bcb9792ea2c925960844465c7d6f82cfdb2bdc7c
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sun Aug 5 23:08:43 2012 -0500
| | | | 
| | | |     Added Laplacian Approximation, Student's T Likelihood model.
| | | | 
| | | | A	src/shogun/lib/external/brent.cpp
| | | | A	src/shogun/lib/external/brent.hpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | A	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | | A	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | | A	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | A	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| | * | commit 37a1d0f4ba29257a7b4eb360391e1df3b3c9993f
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Fri Aug 10 22:49:13 2012 -0500
| | | | 
| | | |     Fixed terrible, terrible numerical errors.
| | | | 
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| | * | commit 962a51e113c7fd8103f06cba3b5464e65ee2b7ea
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sun Aug 5 23:08:43 2012 -0500
| | | | 
| | | |     Added Laplacian Approximation, Student's T Likelihood model.
| | | | 
| | | | A	src/shogun/lib/external/brent.cpp
| | | | A	src/shogun/lib/external/brent.hpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | A	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | | A	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | | A	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | A	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| * | | commit f99819c587e6f05bd51626fd55be6affedd06395
| | | | Author: root <root@gs12672-vm.sp.cs.cmu.edu>
| | | | Date:   Sun Aug 19 11:22:02 2012 -0400
| | | | 
| | | |     Fixed a few bugs, put dlgamma in its proper place.
| | | | 
| | | | M	src/shogun/lib/external/brent.cpp
| | | | A	src/shogun/lib/external/brent.h
| | | | D	src/shogun/lib/external/brent.hpp
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| * | | commit c290ecac35fccc662cc74bc0857465083aea607c
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Mon Aug 13 03:01:10 2012 -0500
| | | | 
| | | |     lized Laplacian Inference Method, Student's T Likelihood Model,
| | | |     Added Scale parameter to FITC Method. Added Laplacian Inference Example.
| | | |     Fixed Doxgyen warnings and added new code to modular interface.
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/regression_gaussian_process_laplace.cpp
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/shogun/base/SGObject.h
| | | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | | M	src/shogun/evaluation/EvaluationResult.h
| | | | M	src/shogun/evaluation/GradientCriterion.h
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/evaluation/MachineEvaluation.h
| | | | M	src/shogun/kernel/CombinedKernel.h
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/Kernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/kernel/ProductKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.cpp
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| * | | commit f13b9976e68fa2c82482a87ba5ef2f3febeed6d1
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Fri Aug 10 22:49:13 2012 -0500
| | | | 
| | | |     Fixed terrible, terrible numerical errors.
| | | | 
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | | | M	src/shogun/regression/gp/StudentsTLikelihood.h
| | | |     
| * | | commit c6a0c3b12ec795901cd66975daf8f9faaafc0bc4
|/ / /  Author: puffin444 <walke434@msu.edu>
| | |   Date:   Sun Aug 5 23:08:43 2012 -0500
| | |   
| | |       Added Laplacian Approximation, Student's T Likelihood model.
| | |   
| | |   A	src/shogun/lib/external/brent.cpp
| | |   A	src/shogun/lib/external/brent.hpp
| | |   M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | |   M	src/shogun/regression/gp/GaussianLikelihood.h
| | |   A	src/shogun/regression/gp/LaplacianInferenceMethod.cpp
| | |   A	src/shogun/regression/gp/LaplacianInferenceMethod.h
| | |   M	src/shogun/regression/gp/LikelihoodModel.h
| | |   A	src/shogun/regression/gp/StudentsTLikelihood.cpp
| | |   A	src/shogun/regression/gp/StudentsTLikelihood.h
| | |      
* | |   commit bc5961cc0846dd375c5149fe76dfdc9a0c87a412
|\ \ \  Merge: 51ead7d 27a88d8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Aug 19 06:46:44 2012 -0700
| | | | 
| | | |     Merge pull request #746 from karlnapf/master
| | | |     
| | | |     and another fix
| | | |     
| * | | commit 27a88d89697756a7de41f161c35ded5359fa7b2e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Aug 19 14:46:02 2012 +0100
| | | | 
| | | |     applied name change of renamed statistics methods
| | | | 
| | | | M	examples/undocumented/libshogun/statistics.cpp
| | | |       
* | | |   commit 51ead7d1e85eca10d150c9c258455f10e880ccb6
|\ \ \ \  Merge: 3655205 79376bb
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Sun Aug 19 06:40:33 2012 -0700
| | | |   
| | | |       Merge pull request #745 from karlnapf/master
| | | |       
| | | |       fix java modular build by renaming methods
| | | |     
| * | | commit 79376bb43fa04c60a0b0eeef720e53720638135c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Aug 19 14:39:19 2012 +0100
| | | | 
| | | |     renamed matrix methods for mean/variance/std-dev in order to make
| | | |     modular java work again
| | | | 
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_mkl_weight_storage.cpp
| | | | M	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |       
* | | |   commit 365520575b30657c30e0324fa167a442aa2805d6
|\ \ \ \  Merge: b56c2b4 1100bac
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Sun Aug 19 06:30:33 2012 -0700
| | | |   
| | | |       Merge pull request #744 from karlnapf/master
| | | |       
| | | |       some more detailed error messages
| | | |     
| * | | commit 1100bac4e7910de3ff63e09f66b30a86412f742b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Aug 19 14:29:52 2012 +0100
| | | | 
| | | |     added propper error messages
| | | | 
| | | | M	src/shogun/evaluation/CrossValidationMKLStorage.cpp
| | | |       
* | | |   commit b56c2b46d71efbf44f921c5e45e16924ddd80584
|\ \ \ \  Merge: d9d1a78 8dfb13d
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Sun Aug 19 06:19:02 2012 -0700
| | | |   
| | | |       Merge pull request #743 from karlnapf/master
| | | |       
| | | |       python example for storing mkl weights during x-validation
| | | |     
| * | | commit 8dfb13d63246b2ceace85e3ebdcb22ffc7cc605a
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Sun Aug 19 14:18:07 2012 +0100
| | |   
| | |       added mkl storage python example
| | |   
| | |   A	examples/undocumented/python_modular/evaluation_cross_validation_mkl_weight_storage.py
| | |      
* | |   commit d9d1a7829cebec3d5a307d52bad8ecd737700b8b
|\ \ \  Merge: b4244cd d033ba3
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Aug 19 04:43:49 2012 -0700
| | | | 
| | | |     Merge pull request #742 from iglesias/so
| | | |     
| | | |     Accuracy evaluation for structured labels
| | | |     
| * | | commit d033ba3aa065c0455f6cb328d973d90131133987
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Aug 19 13:04:26 2012 +0200
| | | | 
| | | |     ~ use of StructuredAccuracy in examples
| | | | 
| | | | M	examples/undocumented/libshogun/so_multiclass.cpp
| | | | M	examples/undocumented/python_modular/structure_hmsvm_mosek.py
| | | |     
| * | | commit 57b9bed6ddf4fdc1a8e3ff19717e2f9d0bf3f8ac
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Aug 19 13:01:51 2012 +0200
| | | | 
| | | |     + accuracy evaluation for structured labels
| | | | 
| | | | M	src/interfaces/modular/Evaluation.i
| | | | M	src/interfaces/modular/Evaluation_includes.i
| | | | A	src/shogun/evaluation/StructuredAccuracy.cpp
| | | | A	src/shogun/evaluation/StructuredAccuracy.h
| | | |     
| * | | commit 8e9721e564d57242aa8ba616e8b8ef3698de2432
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Aug 19 12:58:52 2012 +0200
| | | | 
| | | |     + get structured data type and checks to ensure the same data type is used in StructuredLabels
| | | | 
| | | | M	src/shogun/labels/StructuredLabels.cpp
| | | | M	src/shogun/labels/StructuredLabels.h
| | | |     
| * | | commit cd3dc1d4cc16c253530e1c7afc1796649e162cc8
|/ / /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |   Date:   Sun Aug 19 12:57:39 2012 +0200
| | |   
| | |       + method to compute the mean of a vector in SGVector
| | |   
| | |   M	src/shogun/lib/SGVector.cpp
| | |   M	src/shogun/lib/SGVector.h
| | |      
* | |   commit b4244cdea7c06e31a0e80d97affba22d8eca32b2
|\ \ \  Merge: 8aa94d2 b9cb8f5
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Aug 19 02:57:33 2012 -0700
| | | | 
| | | |     Merge pull request #741 from vigsterkr/latent
| | | |     
| | | |     Change LatentModel to use COFFIN framework
| | | |     
| * | | commit b9cb8f546e2f758df9207720568c83030b791863
|/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | |   Date:   Sun Aug 19 11:26:59 2012 +0200
| | |   
| | |       Change LatentModel to use COFFIN framework
| | |   
| | |   M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | |   M	src/shogun/latent/LatentModel.h
| | |   M	src/shogun/latent/LatentSVM.cpp
| | |   M	src/shogun/machine/LinearLatentMachine.cpp
| | |    
* | | commit 8aa94d28dc76ee553d128a5a0aaa34aaaa75a98a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Aug 19 06:22:18 2012 +0400
| | | 
| | |     Introduced multiclass tree guided logistic regression
| | | 
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/interfaces/modular/Multiclass_includes.i
| | | M	src/shogun/lib/IndexBlockTree.cpp
| | | M	src/shogun/lib/IndexBlockTree.h
| | | M	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| | | M	src/shogun/lib/slep/slep_mc_tree_lr.h
| | | A	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.cpp
| | | A	src/shogun/multiclass/MulticlassTreeGuidedLogisticRegression.h
| | |    
* | | commit 63f32c9905dbe797e9902289dcc3b10f3bb2eb4b
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Aug 18 23:13:55 2012 +0400
| | | 
| | |     Added tree regularized multiclass logistic regression
| | | 
| | | A	src/shogun/lib/slep/slep_mc_tree_lr.cpp
| | | A	src/shogun/lib/slep/slep_mc_tree_lr.h
| | |    
* | | commit 37d4ed676657b73d149311f9f299a33096e1d9a8
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Aug 18 23:13:31 2012 +0400
| | | 
| | |     Removed redundant positive and negative weighting in slep solver
| | | 
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | |      
* | |   commit 13750d9998955bd5b59e5009b3dfb780863a8044
|\ \ \  Merge: 7cfee21 eafbb83
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sat Aug 18 09:28:47 2012 -0700
| | | | 
| | | |     Merge pull request #739 from pluskid/multiclass
| | | |     
| | | |     use shogun built-in evaluation.
| | | |     
| * | | commit eafbb838490b44bec8ea45ef3af0ab9b3e7c3d73
|/ / /  Author: Chiyuan Zhang <pluskid@gmail.com>
| | |   Date:   Sat Aug 18 22:42:32 2012 +0800
| | |   
| | |       use shogun built-in evaluation.
| | |   
| | |   M	examples/undocumented/python_modular/graphical/regression_lars.py
| | |      
* | |   commit 7cfee21049aab58f65a6825d93d7685b52c7cf56
|\ \ \  Merge: 38642f1 8e8fff9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Aug 18 04:15:02 2012 -0700
| | | | 
| | | |     Merge pull request #738 from karlnapf/master
| | | |     
| | | |     memory bug fix
| | | |     
| * | | commit 8e8fff9d6df665f1d23badb2630e74f38909b2de
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Aug 18 12:13:08 2012 +0100
| | | | 
| | | |     added example for case that was failing before
| | | | 
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_mkl_weight_storage.cpp
| | | |     
| * | | commit cf6beaf9cfcb44e9293b5d2317297e2658826c1b
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Sat Aug 18 12:12:58 2012 +0100
| | |   
| | |       fixed memory bug when cross-validation was performed twice with different number of runs
| | |   
| | |   M	src/shogun/evaluation/CrossValidationMKLStorage.cpp
| | |    
* | | commit 38642f1a628c0fc61371c0c11b041fc202da23c6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Aug 18 04:07:16 2012 +0400
| | | 
| | |     Fixed a few issues with feature blocked logit regression
| | | 
| | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | M	src/shogun/lib/IndexBlockGroup.cpp
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | |      
* | |   commit ca1d2d0177bef6a9341002f845147925253d1dc0
|\ \ \  Merge: c4e6009 65d1a5f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 12:51:31 2012 -0700
| | | | 
| | | |     Merge pull request #737 from karlnapf/master
| | | |     
| | | |     added a class to store mkl kernel weights during cross-validation
| | | |     
| * | | commit 65d1a5f562ebdf6b3adf3c99277a60424b63c471
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:44:37 2012 +0100
| | | | 
| | | |     added small comment
| | | | 
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_mkl_weight_storage.cpp
| | | |     
| * | | commit 714c774dbeeaa640d7ef8d5714ad0f32324f5009
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:43:37 2012 +0100
| | | | 
| | | |     added std deviation for matrices
| | | | 
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |     
| * | | commit ae89c51fe6639484564e1f16cb643b96578d6faf
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:33:19 2012 +0100
| | | | 
| | | |     added example for storing mkl weights in cross-validation
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	src/shogun/evaluation/CrossValidationMKLStorage.cpp
| | | | A	src/shogun/evaluation/CrossValidationMKLStorage.h
| | | |     
| * | | commit f93e6874f79f34664bb1dd260f5edbfd7e83d86a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:33:06 2012 +0100
| | | | 
| | | |     added MKL weight storage class for cross validation output
| | | | 
| | | | A	examples/undocumented/libshogun/evaluation_cross_validation_mkl_weight_storage.cpp
| | | | M	src/interfaces/modular/Evaluation.i
| | | | M	src/interfaces/modular/Evaluation_includes.i
| | | |     
| * | | commit 67c8c4888eb695926c33bb92bdbe08e6d67e03a3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:32:47 2012 +0100
| | | | 
| | | |     changed structure a bit
| | | | 
| | | | M	src/shogun/evaluation/CrossValidationOutput.h
| | | | M	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| | | | M	src/shogun/evaluation/CrossValidationPrintOutput.h
| | | |     
| * | | commit efb837ea727cb8499ecf56b1aadd337391462da9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:32:37 2012 +0100
| | | | 
| | | |     fold index is now also updates in cross validation output
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | |     
| * | | commit b63a532b2ac8059079129dfe32e1ead3873ee639
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 20:31:58 2012 +0100
| | | | 
| | | |     added test for mean and variance for vectors and matrices
| | | | 
| | | | M	examples/undocumented/libshogun/statistics.cpp
| | | |     
| * | | commit 74c859910b23ec26fd127d532de912e4a05f087c
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Aug 17 20:31:44 2012 +0100
| | |   
| | |       added mean and variance for matrices
| | |   
| | |   M	src/shogun/mathematics/Statistics.cpp
| | |   M	src/shogun/mathematics/Statistics.h
| | |      
* | |   commit c4e6009af9013c2c51ce6b6cb1fc30a1e408cbbc
|\ \ \  Merge: 3103008 1157560
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 10:25:18 2012 -0700
| | | | 
| | | |     Merge pull request #736 from karlnapf/master
| | | |     
| | | |     quickfix
| | | |     
| * | | commit 1157560874ad4a0408d9f38160274b25e4aa4999
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:24:56 2012 +0100
| | | | 
| | | |     quickfix for modular interfaces
| | | | 
| | | | M	src/interfaces/modular/Evaluation.i
| | | |       
* | | |   commit 3103008a244fcd82b45104dafa86de24ff879dcc
|\ \ \ \  Merge: 9bcdbb0 0b1bac4
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Aug 17 10:22:36 2012 -0700
| | | |   
| | | |       Merge pull request #735 from karlnapf/master
| | | |       
| | | |       new cross-validation output system
| | | |     
| * | | commit 0b1bac44874442f4ca67b8a8bce54d7d09af95eb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:18:55 2012 +0100
| | | | 
| | | |     cross validation outputs are now a list where listeners can be added
| | | |     these are then updated in cross-validation evaluation
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | |     
| * | | commit 0fd89170c049dc0b0288d17d06c7bb826f79e961
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:18:17 2012 +0100
| | | | 
| | | |     initial commit of print out class for cross validation output
| | | | 
| | | | A	src/shogun/evaluation/CrossValidationPrintOutput.cpp
| | | | A	src/shogun/evaluation/CrossValidationPrintOutput.h
| | | |     
| * | | commit 2e5b470945a749bb207ec250e732c51d32780fb8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:18:03 2012 +0100
| | | | 
| | | |     new abstract base class for cross validation output
| | | | 
| | | | M	src/shogun/evaluation/CrossValidationOutput.h
| | | |     
| * | | commit b7a83a4af051b69da26b6d4977879cbd8684af37
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:17:44 2012 +0100
| | | | 
| | | |     removed ModelSelectionOutput include due to system change
| | | | 
| | | | M	src/shogun/evaluation/GradientEvaluation.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | | M	src/shogun/modelselection/RandomSearchModelSelection.h
| | | |     
| * | | commit 4a51ce8da6c12cbd201f621724bc17ec713d014b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:17:24 2012 +0100
| | | | 
| | | |     added prefixs for display_vector
| | | | 
| | | | M	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/lib/SGVector.h
| | | |     
| * | | commit 7059347621b985174326e9da253543d0460cb6d1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:17:09 2012 +0100
| | | | 
| | | |     file is not needed
| | | | 
| | | | D	src/shogun/evaluation/CrossValidationOutput.cpp
| | | |     
| * | | commit 33526d59c9f727c543ba215e88adb5d4506aec24
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:16:55 2012 +0100
| | | | 
| | | |     applied name change of CCrossValidationResult
| | | | 
| | | | M	src/interfaces/modular/Evaluation.i
| | | | M	src/interfaces/modular/ModelSelection.i
| | | |     
| * | | commit 6b03206127fa45fa958b2bef31e7203c96db43a9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Aug 17 18:16:24 2012 +0100
| | | | 
| | | |     name change in examples to make them compile again
| | | | 
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass_mkl.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_mkl.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | | |     
| * | | commit 0466143fc22362e598606f92e45f0a6c2e9319f1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 15 18:48:09 2012 +0100
| | | | 
| | | |     updated modular interfaces for refactoring of CModelSelectionOutput
| | | | 
| | | | M	src/interfaces/modular/Evaluation.i
| | | | M	src/interfaces/modular/Evaluation_includes.i
| | | | M	src/interfaces/modular/ModelSelection.i
| | | | M	src/interfaces/modular/ModelSelection_includes.i
| | | |     
| * | | commit e36b111ed4cf032b92b44999a3d8042529c7b4b4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 15 18:41:12 2012 +0100
| | | | 
| | | |     cleaned up example a bit
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | |     
| * | | commit 35a05b6848a03a9bb394d61996ccaccbe1b11a45
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 15 18:41:04 2012 +0100
| | | | 
| | | |     refactored CModelSelectionOutput class as a preparation for upcoming changes
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | | A	src/shogun/evaluation/CrossValidationOutput.cpp
| | | | A	src/shogun/evaluation/CrossValidationOutput.h
| | | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | | M	src/shogun/evaluation/GradientEvaluation.h
| | | | M	src/shogun/evaluation/MachineEvaluation.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelection.h
| | | | D	src/shogun/modelselection/ModelSelectionOutput.cpp
| | | | D	src/shogun/modelselection/ModelSelectionOutput.h
| | | | M	src/shogun/modelselection/RandomSearchModelSelection.cpp
| | | |     
| * | | commit 8ea1ff274cec9309245e3c1a2510eb9f780a9a2b
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Wed Aug 15 18:39:51 2012 +0100
| | |   
| | |       added debug messages
| | |   
| | |   M	src/shogun/kernel/CombinedKernel.cpp
| | |      
* | |   commit 9bcdbb0b0630409608e0e20398de8ef780d81acb
|\ \ \  Merge: 80685b0 4a66c7b
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 17 05:15:58 2012 -0700
| | | | 
| | | |     Merge pull request #734 from vigsterkr/latent
| | | |     
| | | |     Mosek is using threads the -lpthread libarary flag was missing for cxx_check. Otherwise it should be amongst the POSTLINKFLAGS
| | | |     
| * | | commit 4a66c7b224df11c532947d9f3730020d34859fe7
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Fri Aug 17 10:39:49 2012 +0200
| | | | 
| | | |     Mosek is using threads
| | | |     the -lpthread libarary flag was missing for
| | | |     cxx_check. Otherwise it should be amongst the
| | | |     POSTLINKFLAGS
| | | | 
| | | | M	src/configure
| | | |     
* | | | commit 80685b02ed1823d056102ed33c8c987adfc729bc
|/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Fri Aug 17 15:44:16 2012 +0400
| | |   
| | |       Fixed multiclass ROC
| | |   
| | |   M	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
| | |   M	src/shogun/evaluation/MulticlassOVREvaluation.cpp
| | |   M	src/shogun/labels/MulticlassLabels.cpp
| | |   M	src/shogun/machine/MulticlassMachine.cpp
| | |      
* | |   commit 6684bae27c087313a1fecf446ea3973e64c52ae4
|\ \ \  Merge: 2b6d30f b3b76e8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 17 01:12:52 2012 -0700
| | | | 
| | | |     Merge pull request #732 from vigsterkr/latent
| | | |     
| | | |     Fix mosek library detection
| | | |     
| * | | commit b3b76e8bfb3c3f80eb3ceececf21c430b7e55948
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Fri Aug 17 10:09:05 2012 +0200
| | | | 
| | | |     Fix mosek library detection
| | | |     Mosek was not detected on 64-bits system
| | | | 
| | | | M	src/configure
| | | |       
* | | |   commit 2b6d30f3a13cebda159a47a7387cc038d625aa5d
|\ \ \ \  Merge: 7636b27 6f08f28
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Fri Aug 17 01:12:32 2012 -0700
| | | |   
| | | |       Merge pull request #727 from vigsterkr/so
| | | |       
| | | |       Fix memory leak in libp3bm
| | | |     
| * | | commit 6f08f28afc6a20b81d8f08bd5cfcb7150a91431e
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Fri Aug 17 09:11:10 2012 +0200
| | | | 
| | | |     Avoid possible double-freeing memory
| | | | 
| | | | M	src/shogun/structure/libp3bm.cpp
| | | |     
| * | | commit d0ac3851d3a0bdf6c964f60310477cd15bfb27b1
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Thu Aug 16 21:03:32 2012 +0200
| | | | 
| | | |     Fix memory leak in libp3bm
| | | | 
| | | | M	src/shogun/structure/libp3bm.cpp
| | | |       
* | | |   commit 7636b27c8b2319fe77867418b0f733e6f699a640
|\ \ \ \  Merge: 2fecaab 2bf574c
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Aug 16 19:11:56 2012 -0700
| | | | | 
| | | | |     Merge pull request #730 from iglesias/so
| | | | |     
| | | | |     Fixes in Multiclass SO
| | | | |      
| * | | | commit 2bf574c9778a9492d2685e048230b325efb631c1
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Thu Aug 16 23:44:03 2012 +0200
| | | | | 
| | | | |     * fix memory leaks in SO multiclass example with MOSEK
| | | | | 
| | | | | M	examples/undocumented/libshogun/so_multiclass.cpp
| | | | |      
| * | | | commit f249e8aca2de80b387e8b5beff4aa8853c2f7066
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Thu Aug 16 23:34:16 2012 +0200
| | | | | 
| | | | |     * fix bug in CMosek when matrix A passed to wrapper method is empty
| | | | | 
| | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | |      
* | | | | commit 2fecaabbab8b7f67c53d2700509e89efbb16bc73
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Fri Aug 17 03:47:59 2012 +0400
| | | | | 
| | | | |     Fulfilled a few doc to avoid warnings
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTreeNodeData.h
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | |      
* | | | | commit ef5cfce8b07e183e94e2d9e05048af9d4fbcfc2e
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Fri Aug 17 02:35:48 2012 +0400
| | | | | 
| | | | |     Fixed zero copy example
| | | | | 
| | | | | M	examples/undocumented/python_modular/features_dense_zero_copy_modular.py
| | | | |        
* | | | |   commit afe18a1331bb7e2ce4a62c10b15f44e225ae6a59
|\ \ \ \ \  Merge: 40f88f7 4eb32dc
| |/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | | |   Date:   Thu Aug 16 15:02:11 2012 -0700
| | | | |   
| | | | |       Merge pull request #731 from gsomix/buffer_protocol
| | | | |       
| | | | |       Fixed compilation for other modular interfaces
| | | | |      
| * | | | commit 4eb32dc4648a67b9ae4092db8391bcde1d8dfb09
|/ / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | |   Date:   Fri Aug 17 01:59:57 2012 +0400
| | | |   
| | | |       fixed compilation for other modular interfaces
| | | |   
| | | |   M	src/interfaces/modular/Features.i
| | | |   M	src/interfaces/modular/Library.i
| | | |   M	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | |   M	src/interfaces/python_modular/DenseLabels_protocols.i
| | | |   M	src/interfaces/python_modular/SGVector_protocols.i
| | | |       
* | | |   commit 40f88f7e418a14b18b0c18562afd3db7c3f9629b
|\ \ \ \  Merge: 89a4836 a9e8ca1
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 16 14:35:12 2012 -0700
| | | | | 
| | | | |     Merge pull request #729 from gsomix/buffer_protocol
| | | | |     
| | | | |     Removed code that requires directors
| | | | |      
| * | | | commit a9e8ca1188e353894442629594c3a642e82dd37a
|/ / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | |   Date:   Fri Aug 17 01:33:43 2012 +0400
| | | |   
| | | |       removed code that requires directors
| | | |   
| | | |   M	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | |     
* | | | commit 89a48361e3f9014faa9ea853ef62d336fd27595d
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 17 01:26:58 2012 +0400
| | | | 
| | | |     Fixed serialization issue
| | | | 
| | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | M	src/shogun/labels/MulticlassLabels.cpp
| | | |     
* | | | commit c727079d95dd65112ab2292ad6e778f984136f8e
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 17 00:31:05 2012 +0400
| | | | 
| | | |     Updated data submodule
| | | | 
| | | | M	data
| | | |     
* | | | commit 11b38abe56fc8aeb966607e2f5a93132d9430572
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 17 00:27:09 2012 +0400
| | | | 
| | | |     Fixed KRR example
| | | | 
| | | | M	examples/undocumented/cmdline_static/regression_krr.sg
| | | |       
* | | |   commit c6792c3b5712f72c1edd1df20fd562a252a7b359
|\ \ \ \  Merge: 4c4d431 d3f9d75
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 16 13:19:37 2012 -0700
| | | | | 
| | | | |     Merge pull request #722 from gsomix/buffer_protocol
| | | | |     
| | | | |     Design of zero-copy methods
| | | | |      
| * | | | commit d3f9d7525c250adeb6d45a9be889a29cd2116962
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Thu Aug 16 16:53:26 2012 +0400
| | | | | 
| | | | |     added design of zero-copy methods
| | | | | 
| | | | | D	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | | | A	examples/undocumented/python_modular/features_dense_protocols_modular.py
| | | | | A	examples/undocumented/python_modular/features_dense_zero_copy_modular.py
| | | | | M	src/interfaces/modular/Features.i
| | | | | M	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | | | M	src/interfaces/python_modular/protocols_helper.i
| | | | |      
* | | | | commit 4c4d4316d64f82980022e646a4b29b1b574de63d
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 16 23:50:42 2012 +0400
| | | | | 
| | | | |     Added probably missed kernel setting in arts
| | | | | 
| | | | | M	applications/arts/signal_sensor.py
| | | | |        
* | | | |   commit 7eb8b725ee548789a0c114cdef5c1326303f4efc
|\ \ \ \ \  Merge: 271aeed 2bd9905
| |_|/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | | |   Date:   Thu Aug 16 12:51:26 2012 -0700
| | | | |   
| | | | |       Merge pull request #728 from vigsterkr/latent
| | | | |       
| | | | |       Fix argmax function in MulticlassModel
| | | | |      
| * | | | commit 2bd9905f3ed8c5be9c5a2f26e4cbd26c04a51e3d
|/ / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Thu Aug 16 21:46:55 2012 +0200
| | | |   
| | | |       Fix argmax function in MulticlassModel
| | | |       The logic of finding argmax_y in MulticlassModel::argmax was
| | | |       incorrect, thus sometimes it might not have returned
| | | |       the actual argmax_y!
| | | |       fixed some other possible null pointer dereferencing
| | | |   
| | | |   M	src/shogun/structure/MulticlassModel.cpp
| | | |       
* | | |   commit 271aeed3f955b468d3e8cdbc81a897860107a951
|\ \ \ \  Merge: bfd1965 b7037d3
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 16 10:29:02 2012 -0700
| | | | | 
| | | | |     Merge pull request #725 from vigsterkr/so
| | | | |     
| | | | |     Fix doxygen comments in structure
| | | | |      
| * | | | commit b7037d3d8ba5c36fe20e2fa386d74dadecf58f7b
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Thu Aug 16 19:26:49 2012 +0200
| | | | | 
| | | | |     Fix doxygen comments in structure
| | | | |     Some of the doxygen has not been removed or changed in my previous
| | | | |     commit. This fixes the warnings of those.
| | | | | 
| | | | | M	src/shogun/structure/libbmrm.h
| | | | | M	src/shogun/structure/libp3bm.h
| | | | | M	src/shogun/structure/libppbm.h
| | | | |        
* | | | |   commit bfd196589619104afc18040d7c4cba6fded07c54
|\ \ \ \ \  Merge: f28f0ee 6a96d7e
| |/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | | |   Date:   Thu Aug 16 10:24:08 2012 -0700
| | | | |   
| | | | |       Merge pull request #724 from vigsterkr/latent
| | | | |       
| | | | |       Fix GMOCK_LDADD flag
| | | | |      
| * | | | commit 6a96d7e0d5a9f3f4e148261e8520c06995a0f354
|/ / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Thu Aug 16 19:21:19 2012 +0200
| | | |   
| | | |       Fix GMOCK_LDADD flags
| | | |       gmock and gtest uses threads and -lpthread flag was missing
| | | |       when trying to detect gmock and gtest presence manually
| | | |   
| | | |   M	src/configure
| | | |       
* | | |   commit f28f0ee77dfe1c8b4ee9c43aae39241ade86786d
|\ \ \ \  Merge: eecb090 4f930ca
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Aug 16 09:26:05 2012 -0700
| | | | | 
| | | | |     Merge pull request #723 from uricamic/BM_SOL_EXAMPLE
| | | | |     
| | | | |     BMRM training exception fixed + several warning fixes
| | | | |      
| * | | | commit 4f930cae42304922933e8db2b96733426b5b32eb
| |/ / /  Author: Michal Uricar <uricar.michal@gmail.com>
| | | |   Date:   Thu Aug 16 17:18:14 2012 +0200
| | | |   
| | | |       BMRM training exception fixed + several warning fixes
| | | |   
| | | |   M	examples/undocumented/python_modular/so_multiclass_BMRM.py
| | | |   M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | |   M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | |   M	src/shogun/structure/MulticlassModel.cpp
| | | |   M	src/shogun/structure/StructuredModel.cpp
| | | |   M	src/shogun/structure/StructuredModel.h
| | | |   M	src/shogun/structure/libbmrm.cpp
| | | |   M	src/shogun/structure/libbmrm.h
| | | |   M	src/shogun/structure/libp3bm.cpp
| | | |   M	src/shogun/structure/libp3bm.h
| | | |   M	src/shogun/structure/libppbm.cpp
| | | |   M	src/shogun/structure/libppbm.h
| | | |       
* | | |   commit eecb090130da18d220f82e9d8baeda57117c3fb0
|\ \ \ \  Merge: 3ce4fd2 ae2ea5c
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Thu Aug 16 09:24:57 2012 -0700
| | | |   
| | | |       Merge pull request #721 from vigsterkr/utest
| | | |       
| | | |       Detect gmock framework without gmock-config
| | | |     
| * | | commit ae2ea5c7c92e8fdfb80b533f38d5213e824718a4
|/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | |   Date:   Thu Aug 16 14:49:59 2012 +0200
| | |   
| | |       Detect gmock framework without gmock-config
| | |       On some distributions the google mocking framework
| | |       package does not contain the gmock-config script, thus
| | |       we need to use some other way to detect whether it's
| | |       installed or not.
| | |   
| | |   M	src/configure
| | |      
* | |   commit 3ce4fd282a51bc7253f1ec3e2c5ba61055b965b1
|\ \ \  Merge: ee71cb3 a72e3cf
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Thu Aug 16 04:23:10 2012 -0700
| | | | 
| | | |     Merge pull request #719 from vigsterkr/so
| | | |     
| | | |     Refactor RiskFunction in structure methods
| | | |     
| * | | commit a72e3cf82acf7746ab536f0b2a2036ddc482fd44
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Wed Aug 15 16:39:09 2012 +0200
| | | | 
| | | |     Refactor RiskFunction in structure methods This code refactoring basically adds RiskFunction functionality into StructuredModel. This way we can remove RiskFunction and all the related objects and have only one user defined class (StructuredModel) for SO methods.
| | | | 
| | | | M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | | | M	src/interfaces/modular/Structure.i
| | | | M	src/interfaces/modular/Structure_includes.i
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | D	src/shogun/latent/LatentRiskFunction.cpp
| | | | D	src/shogun/latent/LatentRiskFunction.h
| | | | M	src/shogun/latent/LatentSOSVM.cpp
| | | | D	src/shogun/structure/DirectorRiskFunction.cpp
| | | | D	src/shogun/structure/DirectorRiskFunction.h
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | D	src/shogun/structure/MulticlassRiskFunction.cpp
| | | | D	src/shogun/structure/MulticlassRiskFunction.h
| | | | D	src/shogun/structure/RiskFunction.cpp
| | | | D	src/shogun/structure/RiskFunction.h
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | | M	src/shogun/structure/StructuredModel.h
| | | | M	src/shogun/structure/libbmrm.cpp
| | | | M	src/shogun/structure/libbmrm.h
| | | | M	src/shogun/structure/libp3bm.cpp
| | | | M	src/shogun/structure/libp3bm.h
| | | | M	src/shogun/structure/libppbm.cpp
| | | | M	src/shogun/structure/libppbm.h
| | | |     
* | | | commit ee71cb37d3277ab9b1a459ae95d2c9b45f69ef52
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Thu Aug 16 14:47:32 2012 +0400
| | | | 
| | | |     Removed test example introduced by mistake
| | | | 
| | | | D	examples/undocumented/libshogun/test.cpp
| | | |     
* | | | commit ad15be921571889783ba010463799f1f2b4c0d61
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Thu Aug 16 14:41:57 2012 +0400
| | | | 
| | | |     Fixed KRR examples
| | | | 
| | | | M	examples/undocumented/cmdline_static/regression_krr.sg
| | | | A	examples/undocumented/libshogun/test.cpp
| | | | M	examples/undocumented/matlab_and_octave/regression_krr.m
| | | | M	examples/undocumented/python_static/regression_krr.py
| | | | M	examples/undocumented/r_static/regression_krr.R
| | | |       
* | | |   commit bf3f2dd4d9d9a7b9a84f6b9897d0b6846d1058f6
|\ \ \ \  Merge: 63c8091 1f29074
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 16 03:42:28 2012 -0700
| | | | | 
| | | | |     Merge pull request #720 from vigsterkr/latent
| | | | |     
| | | | |     Remove apply() implementation from LinearLatentMachine
| | | | |      
| * | | | commit 1f2907444e6f9e6b6462430c3e300cabd1ab5a16
|/ / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Thu Aug 16 12:40:52 2012 +0200
| | | |   
| | | |       Remove apply() implementation from LinearLatentMachine
| | | |       As it has been defined as a pure virtual function no
| | | |       need to have an implmentation of it.
| | | |   
| | | |   M	src/shogun/machine/LinearLatentMachine.cpp
| | | |     
* | | | commit 63c80917eb3bc99bfe7af07246c8739c9627c3ab
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 16 12:33:22 2012 +0200
| | | | 
| | | |     require current data / doc
| | | | 
| | | | M	data
| | | | M	doc/tutorial
| | | |     
* | | | commit 42f6150cadf2adc970ea12e75f42c92e4977aac8
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Aug 15 22:40:28 2012 +0400
| | | | 
| | | |     Updated data
| | | | 
| | | | M	data
| | | |       
* | | |   commit eee036ed86f008a76bcc5cf5f17174e478745dd7
|\ \ \ \  Merge: 09b33ad 5689042
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Wed Aug 15 10:59:52 2012 -0700
| | | | | 
| | | | |     Merge pull request #718 from vigsterkr/latent
| | | | |     
| | | | |     Redesign LatentLabels
| | | | |      
| * | | | commit 5689042a7950d6f6a453d69d8d77e279f68447bd
| |/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Wed Aug 15 15:58:59 2012 +0200
| | | |   
| | | |       Redesign LatentLabels This way LatentLabels not only store actually the h_i (latent labels) but as well as in a general way store the actual y_i (labels).
| | | |   
| | | |   M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | |   M	src/shogun/classifier/svm/SVMOcas.cpp
| | | |   M	src/shogun/labels/LatentLabels.cpp
| | | |   M	src/shogun/labels/LatentLabels.h
| | | |   M	src/shogun/latent/LatentModel.cpp
| | | |   M	src/shogun/latent/LatentSOSVM.cpp
| | | |   M	src/shogun/latent/LatentSOSVM.h
| | | |   M	src/shogun/latent/LatentSVM.cpp
| | | |   M	src/shogun/latent/LatentSVM.h
| | | |   M	src/shogun/machine/LinearLatentMachine.cpp
| | | |   M	src/shogun/machine/LinearLatentMachine.h
| | | |       
* | | |   commit 09b33ad7fb83687a39665468e4f87211e4b612e1
|\ \ \ \  Merge: f7116ba ccc31d9
| |/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | |   Date:   Wed Aug 15 10:50:14 2012 -0700
| | | |   
| | | |       Merge pull request #716 from iglesias/so
| | | |       
| | | |       * doc fixes and less warnings
| | | |     
| * | | commit ccc31d95b5e1ce85d74dd0368a281c39cb4d1bcb
|/ / /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |   Date:   Wed Aug 15 08:31:09 2012 +0200
| | |   
| | |       * doc fixes and less warnings
| | |   
| | |   M	src/shogun/features/MatrixFeatures.cpp
| | |   M	src/shogun/features/MatrixFeatures.h
| | |   M	src/shogun/structure/HMSVMLabels.h
| | |   M	src/shogun/structure/HMSVMModel.h
| | |   M	src/shogun/structure/MulticlassModel.h
| | |   M	src/shogun/structure/StateModel.h
| | |   M	src/shogun/structure/TwoStateModel.cpp
| | |   M	src/shogun/structure/TwoStateModel.h
| | |    
* | | commit f7116ba30d4515936ec140a732881e6215616d1f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 15 04:33:18 2012 +0400
| | | 
| | |     Restored termination check in clustered MTL
| | | 
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | |    
* | | commit 97768b974da8a00c79feaa7d093a53ec075a4c8f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 15 01:42:01 2012 +0400
| | | 
| | |     Fixed some regression static tester issues
| | | 
| | | M	data
| | | M	src/shogun/ui/GUIClassifier.cpp
| | | D	tests/regression/matlab_and_octave/preproc.m
| | | A	tests/regression/matlab_and_octave/preprocessor.m
| | | M	tests/regression/matlab_and_octave/util/set_distance.m
| | | D	tests/regression/python_static/preproc.py
| | | A	tests/regression/python_static/preprocessor.py
| | | M	tests/regression/python_static/regression.py
| | | M	tests/regression/python_static/test_one.py
| | | D	tests/regression/r_static/preproc.R
| | | A	tests/regression/r_static/preprocessor.R
| | |    
* | | commit c6a588e0e53cb5679568287a28a5323941ee5d12
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 15 00:03:05 2012 +0400
| | | 
| | |     Attempt to fix csharp compilation
| | | 
| | | M	src/shogun/evaluation/MulticlassOVREvaluation.h
| | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | | M	src/shogun/structure/MulticlassSOLabels.h
| | |    
* | | commit bbcbb01671445badd2d42a6cad1781b7c241868b
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 14 23:06:57 2012 +0400
| | | 
| | |     Updated ignore statement to fix java building
| | | 
| | | M	src/interfaces/modular/modshogun_ignores.i
| | |    
* | | commit 973c3d79993cf99ec16c11578f71a2aa7008f7f1
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 14 19:43:28 2012 +0200
| | | 
| | |     rename conflicting get_labels function to get_latent_labels in CLatentLabels
| | | 
| | | M	src/shogun/labels/LatentLabels.cpp
| | | M	src/shogun/labels/LatentLabels.h
| | |      
* | |   commit 419f224bd5930a950e674c5890d3e4225dc90666
|\ \ \  Merge: d16ae4b f4c19cb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 14 08:58:56 2012 -0700
| | | | 
| | | |     Merge pull request #714 from karlnapf/master
| | | |     
| | | |     john platt's sigmoid fitting for binary svm
| | | |     
| * | | commit f4c19cb95c8c5546102100f40f024068b6fe3457
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 14 16:58:08 2012 +0100
| | | | 
| | | |     bugfix
| | | | 
| | | | M	src/shogun/labels/BinaryLabels.cpp
| | | |     
| * | | commit 854ec32ec318e6780fd92605aae4d6b437466e35
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 14 16:57:23 2012 +0100
| | | | 
| | | |     minor updates
| | | | 
| | | | M	src/shogun/labels/BinaryLabels.cpp
| | | | M	src/shogun/labels/BinaryLabels.h
| | | |     
| * | | commit d75793a7c4c5a220ccb03a1bbc01ec3d9c60d7c7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 14 16:48:17 2012 +0100
| | | | 
| | | |     added example/test for fitting sigmoid on binary labels
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/labels_binary_fit_sigmoid.cpp
| | | |     
| * | | commit 47bbe6ad3be61907b0f9b2c7aa6840b07157ec9d
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Aug 14 16:47:59 2012 +0100
| | |   
| | |       added john platt's method for computung calibrated posterior outputs for
| | |       Binary Labels
| | |   
| | |   M	src/shogun/labels/BinaryLabels.cpp
| | |   M	src/shogun/labels/BinaryLabels.h
| | |    
* | | commit d16ae4bb5704b5dd4d1978f03d2db51b420d75a0
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 14 05:00:19 2012 +0400
| | | 
| | |     Made MulticlassRiskFunction use COFFIN operations and fixed reference count for data in dual lib qpbmsosvm
| | | 
| | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | M	src/shogun/structure/MulticlassRiskFunction.cpp
| | |    
* | | commit 122079a8e620594c12a90d34b405acc55b3693f6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 14 02:01:50 2012 +0400
| | | 
| | |     Restored data
| | | 
| | | M	data
| | |      
* | |   commit 45a5ee420bb5f8300dedc9aa79f63041e8b92029
|\ \ \  Merge: 2250325 8c6aabb
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Aug 13 15:01:26 2012 -0700
| | | | 
| | | |     Merge pull request #684 from iglesias/so
| | | |     
| | | |     Updates in SO framework and HM-SVM implementation
| | | |     
| * | | commit 8c6aabb1691fbfc0cf631c1ae2b219a34f5379e6
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Aug 8 12:18:27 2012 +0200
| | | | 
| | | |     ~ refactor MatrixFeatures due to SGMatrixList * bug fixes in example and TwoStateModel
| | | | 
| | | | M	data
| | | | M	examples/undocumented/libshogun/so_hmsvm_mosek.cpp
| | | | M	src/shogun/features/MatrixFeatures.cpp
| | | | M	src/shogun/features/MatrixFeatures.h
| | | | M	src/shogun/lib/SGMatrix.cpp
| | | | M	src/shogun/lib/SGMatrix.h
| | | | M	src/shogun/lib/SGMatrixList.cpp
| | | | M	src/shogun/lib/SGMatrixList.h
| | | | M	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/lib/SGVector.h
| | | | M	src/shogun/structure/TwoStateModel.cpp
| | | |     
| * | | commit c7a5b8655f36aec014095a0a84458684709e62a0
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Aug 8 12:12:38 2012 +0200
| | | | 
| | | |     + new SGMatrixList
| | | | 
| | | | A	src/shogun/lib/SGMatrixList.cpp
| | | | A	src/shogun/lib/SGMatrixList.h
| | | |     
| * | | commit 64762928a215ae6f380ee45ed5d292610a1187f3
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Aug 1 10:01:34 2012 +0200
| | | | 
| | | |     ~ rename hmsvm python example
| | | | 
| | | | D	examples/undocumented/python_modular/so_hmsvm_mosek.py
| | | | A	examples/undocumented/python_modular/structure_hmsvm_mosek.py
| | | | M	src/shogun/features/MatrixFeatures.h
| | | | M	src/shogun/lib/SGMatrix.cpp
| | | |     
| * | | commit 8e3506c2e4961dafbb2278a46e148d7403d95b5e
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Aug 1 09:55:22 2012 +0200
| | | | 
| | | |     code refactoring: moving some parts from HMSVMModel to StateModel and reducing memory usage
| | | | 
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/StateModel.cpp
| | | | M	src/shogun/structure/StateModel.h
| | | | M	src/shogun/structure/TwoStateModel.cpp
| | | | M	src/shogun/structure/TwoStateModel.h
| | | |     
| * | | commit 20f01a4289bb1abe04f400e77cfc83974ff5d7a8
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Jul 27 08:30:12 2012 +0200
| | | | 
| | | |     + large commit, several fixes and additions in the HM-SVM
| | | | 
| | | | A	examples/undocumented/libshogun/so_hmsvm_mosek.cpp
| | | | A	examples/undocumented/libshogun/so_hmsvm_mosek_simple.cpp
| | | | A	examples/undocumented/python_modular/so_hmsvm_mosek.py
| | | | M	src/interfaces/modular/Features.i
| | | | M	src/interfaces/modular/Features_includes.i
| | | | M	src/interfaces/modular/Structure.i
| | | | M	src/interfaces/modular/Structure_includes.i
| | | | M	src/shogun/features/MatrixFeatures.cpp
| | | | M	src/shogun/features/MatrixFeatures.h
| | | | M	src/shogun/lib/SGMatrix.cpp
| | | | M	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/mathematics/Mosek.cpp
| | | | M	src/shogun/mathematics/Mosek.h
| | | | M	src/shogun/structure/HMSVMLabels.cpp
| | | | M	src/shogun/structure/HMSVMLabels.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | A	src/shogun/structure/StateModel.cpp
| | | | A	src/shogun/structure/StateModel.h
| | | | A	src/shogun/structure/StateModelTypes.h
| | | | M	src/shogun/structure/StructuredModel.h
| | | | A	src/shogun/structure/TwoStateModel.cpp
| | | | A	src/shogun/structure/TwoStateModel.h
| | | |     
| * | | commit f5185a6c0fcfd4016141551b2b5878f2ef3c7256
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Jul 25 07:54:28 2012 +0200
| | | | 
| | | |     * bug fix: add initialization of matrices in MatrixFeatures constructor
| | | | 
| | | | M	src/shogun/features/MatrixFeatures.cpp
| | | |     
| * | | commit 7715281a3588f7e4fe67ff8f5e2adcf85e98f763
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Tue Jul 24 23:00:56 2012 +0200
| | | | 
| | | |     + handling of auxiliary variables in the so-svm
| | | | 
| | | | M	src/shogun/mathematics/Mosek.cpp
| | | | M	src/shogun/mathematics/Mosek.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | | M	src/shogun/structure/StructuredModel.h
| | | |     
| * | | commit 81a472a41d8f8be1ea8774b0345dea1fa340e49f
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Tue Jul 24 07:40:43 2012 +0200
| | | | 
| | | |     * fixes in HMSVMModel, joint feature computation and score matrix in argmax
| | | | 
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | |     
| * | | commit e700aa8d88bc95bd9b373ebc2a2d96e955d175f1
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sat Jul 14 17:54:50 2012 +0200
| | | | 
| | | |     large commit. Several additions in HMSVM, fixes for memory leaks, etc
| | | | 
| | | | M	src/interfaces/modular/Structure.i
| | | | M	src/interfaces/modular/Structure_includes.i
| | | | M	src/shogun/lib/SGMatrix.cpp
| | | | M	src/shogun/lib/SGMatrix.h
| | | | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | | | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | | | M	src/shogun/mathematics/Mosek.h
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | M	src/shogun/structure/HMSVMLabels.cpp
| | | | M	src/shogun/structure/HMSVMLabels.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | M	src/shogun/structure/PrimalMosekSOSVM.h
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | | M	src/shogun/structure/StructuredModel.h
| | | |     
| * | | commit 6495a381cf1ef28acaf603ffb52985ec92edde2b
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sat Jul 14 17:09:38 2012 +0200
| | | | 
| | | |     + new constructor and * minor fixes in MatrixFeatures
| | | | 
| | | | M	src/shogun/features/MatrixFeatures.cpp
| | | | M	src/shogun/features/MatrixFeatures.h
| | | |     
| * | | commit ef9dcc07da4cc5ac94f4d5e938e623891b642225
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Jul 5 01:30:48 2012 +0200
| | | | 
| | | |     + simulation of two state data for the HMSVM
| | | | 
| | | | M	src/shogun/features/MatrixFeatures.h
| | | | M	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/lib/SGVector.h
| | | | M	src/shogun/structure/HMSVMLabels.cpp
| | | | M	src/shogun/structure/HMSVMLabels.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | |     
| * | | commit a1ac42444629d1dd53f8156b33ba1b77cd2da7e5
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Jul 4 01:54:21 2012 +0200
| | | | 
| | | |     VLMatrixFeatures to simpler MatrixFeatures, redesign in delta loss, updates in multiclass and HMSVM models
| | | | 
| | | | A	src/shogun/features/MatrixFeatures.cpp
| | | | A	src/shogun/features/MatrixFeatures.h
| | | | D	src/shogun/features/VLMatrixFeatures.cpp
| | | | D	src/shogun/features/VLMatrixFeatures.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | | M	src/shogun/structure/StructuredModel.h
| | | |     
| * | | commit a60b7d809b31f3c973f7e68e7413e41fc9c36ca9
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Jul 1 16:29:28 2012 +0200
| | | | 
| | | |     + psi function for HM-SVM and + check training data in structured model
| | | | 
| | | | M	src/shogun/structure/HMSVMLabels.cpp
| | | | M	src/shogun/structure/HMSVMLabels.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/HMSVMModel.h
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | M	src/shogun/structure/StructuredModel.cpp
| | | | M	src/shogun/structure/StructuredModel.h
| | | |     
| * | | commit 85678bddbd7d593ff55a6a15a6b4012695be1bc0
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sat Jun 30 16:01:18 2012 +0200
| | | | 
| | | |     + delta loss in HMSVM model and various fixes
| | | | 
| | | | M	src/shogun/labels/StructuredLabels.h
| | | | M	src/shogun/structure/HMSVMLabels.cpp
| | | | M	src/shogun/structure/HMSVMLabels.h
| | | | M	src/shogun/structure/HMSVMModel.cpp
| | | | M	src/shogun/structure/MulticlassModel.cpp
| | | |     
| * | | commit fe5d8257d0172ce468e9d361e7b9fc39d3ea63cd
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Jun 28 14:43:26 2012 +0200
| | | | 
| | | |     ~ adapt MatrixFeatures to handle that features can be sequences of different length
| | | | 
| | | | D	src/shogun/features/MatrixFeatures.cpp
| | | | D	src/shogun/features/MatrixFeatures.h
| | | | A	src/shogun/features/VLMatrixFeatures.cpp
| | | | A	src/shogun/features/VLMatrixFeatures.h
| | | |     
| * | | commit fe8f351ac173eebfe2e51d3b1021ca0971e815ad
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Jun 27 13:10:23 2012 +0200
| | | | 
| | | |     + code skeletons for the HM-SVM in the SO framework
| | | | 
| | | | A	src/shogun/features/MatrixFeatures.cpp
| | | | A	src/shogun/features/MatrixFeatures.h
| | | | M	src/shogun/lib/StructuredDataTypes.h
| | | | A	src/shogun/structure/HMSVMLabels.cpp
| | | | A	src/shogun/structure/HMSVMLabels.h
| | | | A	src/shogun/structure/HMSVMModel.cpp
| | | | A	src/shogun/structure/HMSVMModel.h
| | | |     
| * | | commit 1d9fc377348af8cec0e58e3c7437cd1404cc9b45
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Jun 27 13:05:38 2012 +0200
| | | | 
| | | |     * doc fixes and ~ minor modifications
| | | | 
| | | | M	src/shogun/structure/MulticlassModel.h
| | | | M	src/shogun/structure/MulticlassSOLabels.cpp
| | | | M	src/shogun/structure/MulticlassSOLabels.h
| | | |       
* | | |   commit 2250325b83ce2cd22150ff83432ba83247ee9d8b
|\ \ \ \  Merge: 31528b4 dabe375
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 14:54:11 2012 -0700
| | | | | 
| | | | |     Merge pull request #713 from vigsterkr/latent
| | | | |     
| | | | |     Add unit testing description to README.developer
| | | | |      
| * | | | commit dabe375422486c9cda406abc6fd6c8e3a81b8b12
|/ / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Mon Aug 13 23:53:04 2012 +0200
| | | |   
| | | |       Add unit testing description to README.developer
| | | |   
| | | |   M	src/README.developer
| | | |     
* | | | commit 31528b40dda5fc14899847457ac498b19fe84c98
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Aug 14 01:13:57 2012 +0400
| | | | 
| | | |     A few more warnings fixes
| | | | 
| | | | M	src/shogun/base/Parameter.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |       
* | | |   commit 892a159d3cd3266b9686dd6699777b6ed9fb7444
|\ \ \ \  Merge: 60278ef 3548686
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 12:53:53 2012 -0700
| | | | | 
| | | | |     Merge pull request #697 from vigsterkr/master
| | | | |     
| | | | |     Update libocas to version 0.96
| | | | |      
| * | | | commit 354868600411c464342f7204eceba3e8f4896184
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Mon Aug 13 21:51:27 2012 +0200
| | | | | 
| | | | |     Fix labeling in msvm_ocas_solver
| | | | | 
| | | | | M	src/shogun/lib/external/libocas.cpp
| | | | |      
| * | | | commit 11c17305ebd0a3a71850ba0211eff547e2c2b875
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Thu Aug 9 12:24:31 2012 +0200
| | | | | 
| | | | |     Add minor fixes for libocas 0.96 update
| | | | | 
| | | | | M	src/shogun/lib/external/libocas.cpp
| | | | |      
| * | | | commit 0ffe2372780181b29ae13b76f2b08640dbce53a8
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Thu Aug 9 01:27:05 2012 +0200
| | | | | 
| | | | |     Update libocas to version 0.96
| | | | | 
| | | | | M	src/shogun/lib/external/libocas.cpp
| | | | | M	src/shogun/lib/external/libocas.h
| | | | |        
* | | | |   commit 60278eff4716bb70395bceb77c39803fd18a48de
|\ \ \ \ \  Merge: 5df0dcd 2e361a5
| | | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | | Date:   Mon Aug 13 12:27:40 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #712 from vigsterkr/utest
| | | | | |     
| | | | | |     Fix unit testing of LatentSVM
| | | | | |       
| * | | | | commit 2e361a564172f18a5335bdeb3dbc054afbdc3605
| | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | Date:   Mon Aug 13 21:20:47 2012 +0200
| | | | | | 
| | | | | |     Fix unit testing of LatentSVM
| | | | | | 
| | | | | | M	tests/unit/latent/LatentSVM_unittest.cc
| | | | | | M	tests/unit/latent/MockLatentModel.h
| | | | | |       
* | | | | | commit 5df0dcd041b6d54df3726289104d5d06cb673a48
| | | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | | Date:   Mon Aug 13 23:12:33 2012 +0400
| | | | | | 
| | | | | |     Ignored bmrm stuff in modular
| | | | | | 
| | | | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | | |         
* | | | | |   commit f1dc71279b6fa143b1a7f82440abfe9d322d4304
|\ \ \ \ \ \  Merge: be9da8e 6cbc4ee
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Mon Aug 13 12:01:35 2012 -0700
| | | | | |   
| | | | | |       Merge pull request #711 from vigsterkr/utest
| | | | | |       
| | | | | |       Fix gaussian_generator in DataGenertor
| | | | | |       
| * | | | | commit 6cbc4ee248abbcf63601e999a8042f3aa40739c5
|/ / / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | | |   Date:   Mon Aug 13 20:58:16 2012 +0200
| | | | |   
| | | | |       Fix gaussian_generator in DataGenertor
| | | | |       and add unit test for MulticlassOcas and minor changes in SVMOcas
| | | | |       unit test.
| | | | |   
| | | | |   M	src/shogun/features/DataGenerator.cpp
| | | | |   M	tests/unit/base/main_unittest.cc
| | | | |   M	tests/unit/classifier/svm/SVMOcas_unittest.cc
| | | | |   A	tests/unit/multiclass/MulticlassOCAS_unittest.cc
| | | | |        
* | | | |   commit be9da8e5ec71158cb6dc144494bea7ed821fa252
|\ \ \ \ \  Merge: a6cdaf5 9b66a85
| |_|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Mon Aug 13 11:47:41 2012 -0700
| | | | |   
| | | | |       Merge pull request #710 from karlnapf/master
| | | | |       
| | | | |       some changes to graphical statistics examples for matplotlib integration into latex
| | | | |      
| * | | | commit 9b66a8567107ae1c11e42ea6705267c9c341bec1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 13 19:46:11 2012 +0100
| | | | | 
| | | | |     minor updates
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| | | | | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | | |      
| * | | | commit a99f6fe411801a9dc8cfbc0a97dc46188900f77b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 13 19:31:07 2012 +0100
| | | | | 
| | | | |     added import to make matlibplot plots look nice
| | | | | 
| | | | | A	examples/undocumented/python_modular/graphical/latex_plot_inits.py
| | | | |      
| * | | | commit daabd3f3df38c0a3c5627e39b1d0645c3e4029a5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 13 19:30:52 2012 +0100
| | | | | 
| | | | |     updated graphical examples
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/statistics_hsic.py
| | | | | A	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | | |      
| * | | | commit 15cb24b01608357d869288ad86f0e0090c10d33d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 13 19:30:38 2012 +0100
| | | | | 
| | | | |     renamed file
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| | | | | D	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd_mean_shift.py
| | | | |      
* | | | | commit a6cdaf50f7e2ccaa489afdebb73492b610e8606f
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 21:57:11 2012 +0400
| | | | | 
| | | | |     Added preprocessor init calls in crossvalidation
| | | | | 
| | | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | |      
* | | | | commit c49b8cf53fa4b449c02a23d3c3c9b592a321cd9a
|/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | |   Date:   Mon Aug 13 21:34:46 2012 +0400
| | | |   
| | | |       Added multiclass OVR evaluation
| | | |   
| | | |   A	examples/undocumented/python_modular/evaluation_multiclassovrevaluation_modular.py
| | | |   M	src/interfaces/modular/Evaluation.i
| | | |   M	src/interfaces/modular/Evaluation_includes.i
| | | |   A	src/shogun/evaluation/MulticlassOVREvaluation.cpp
| | | |   A	src/shogun/evaluation/MulticlassOVREvaluation.h
| | | |   M	src/shogun/labels/MulticlassLabels.cpp
| | | |   M	src/shogun/labels/MulticlassLabels.h
| | | |   M	src/shogun/machine/MulticlassMachine.cpp
| | | |     
* | | | commit df80e5c7c9afe7d2d535d07f33e7582545038a80
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Aug 13 18:36:02 2012 +0400
| | | | 
| | | |     Removed SLEP machine and redundant L1LogisticRegression, rebased FeatureBlockLogisticRegression and fixed missed weight initialization
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/classifier_featureblocklogisticregression.cpp
| | | | A	examples/undocumented/python_modular/classifier_featureblock_logistic_regression.py
| | | | M	src/interfaces/modular/Classifier.i
| | | | M	src/interfaces/modular/Classifier_includes.i
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | | M	src/shogun/classifier/FeatureBlockLogisticRegression.h
| | | | D	src/shogun/classifier/L1LogisticRegression.cpp
| | | | D	src/shogun/classifier/L1LogisticRegression.h
| | | | M	src/shogun/lib/IndexBlockGroup.cpp
| | | | M	src/shogun/lib/slep/q1/eppVector.h
| | | | D	src/shogun/machine/SLEPMachine.cpp
| | | | D	src/shogun/machine/SLEPMachine.h
| | | |       
* | | |   commit 97b82173c2359806397a388017a3567dbf59379b
|\ \ \ \  Merge: 676cefa d3e9250
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 07:24:04 2012 -0700
| | | | | 
| | | | |     Merge pull request #709 from vigsterkr/latent
| | | | |     
| | | | |     Various fixes for GSoC latent project
| | | | |      
| * | | | commit d3e9250ac772342454eababd37fca6568a195279
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Mon Aug 13 16:21:22 2012 +0200
| | | | | 
| | | | |     Fix author in copyright header
| | | | | 
| | | | | M	src/interfaces/modular/Latent.i
| | | | |      
| * | | | commit bbb7d9be7c51b2713f432a983480362aefc192c5
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Mon Aug 13 12:21:54 2012 +0200
| | | | | 
| | | | |     Various changes for latent variable learning
| | | | |       * changed CLatentData to CData in order to try to remove code code
| | | | |         duplication (see CStructuredData).
| | | | |       * added missing doxygen documentation to all latent code
| | | | |       * added latent variable learning to modular interface
| | | | | 
| | | | | M	.gitignore
| | | | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | | | M	src/interfaces/modular/Features.i
| | | | | M	src/interfaces/modular/Features_includes.i
| | | | | A	src/interfaces/modular/Latent.i
| | | | | A	src/interfaces/modular/Latent_includes.i
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/modshogun.i
| | | | | M	src/shogun/features/LatentFeatures.cpp
| | | | | M	src/shogun/features/LatentFeatures.h
| | | | | M	src/shogun/labels/LatentLabels.cpp
| | | | | M	src/shogun/labels/LatentLabels.h
| | | | | M	src/shogun/latent/LatentModel.cpp
| | | | | M	src/shogun/latent/LatentModel.h
| | | | | M	src/shogun/latent/LatentRiskFunction.cpp
| | | | | M	src/shogun/latent/LatentRiskFunction.h
| | | | | M	src/shogun/latent/LatentSOSVM.cpp
| | | | | M	src/shogun/latent/LatentSVM.h
| | | | | A	src/shogun/lib/Data.cpp
| | | | | A	src/shogun/lib/Data.h
| | | | | M	src/shogun/machine/LinearLatentMachine.cpp
| | | | | M	src/shogun/machine/LinearLatentMachine.h
| | | | |      
| * | | | commit c87bf5eec9e9e5d422f26bfd510cd8e4ab8f38a0
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Tue Jul 24 10:37:00 2012 +0000
| | | | | 
| | | | |     [WIP] restructure latent solvers
| | | | | 
| | | | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | | | D	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | | | D	src/shogun/classifier/svm/LatentLinearMachine.h
| | | | | M	src/shogun/latent/LatentModel.h
| | | | | A	src/shogun/latent/LatentRiskFunction.cpp
| | | | | A	src/shogun/latent/LatentRiskFunction.h
| | | | | A	src/shogun/latent/LatentSOSVM.cpp
| | | | | A	src/shogun/latent/LatentSOSVM.h
| | | | | A	src/shogun/latent/LatentSVM.cpp
| | | | | A	src/shogun/latent/LatentSVM.h
| | | | | A	src/shogun/machine/LinearLatentMachine.cpp
| | | | | A	src/shogun/machine/LinearLatentMachine.h
| | | | |      
* | | | | commit 676cefa3ff3f5dee9c45921b66a573a17692b705
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 17:50:47 2012 +0400
| | | | | 
| | | | |     Fixed java modular compilation issue with BMRM
| | | | | 
| | | | | M	src/shogun/structure/RiskFunction.h
| | | | | M	src/shogun/structure/libbmrm.h
| | | | |      
* | | | | commit d87c37826e1d62325b4025824f1f32222c00e98a
|/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | |   Date:   Mon Aug 13 17:06:04 2012 +0400
| | | |   
| | | |       Fixed a few documentation warnings
| | | |   
| | | |   M	src/shogun/base/Parameter.h
| | | |   M	src/shogun/kernel/GaussianARDKernel.h
| | | |   M	src/shogun/machine/OnlineLinearMachine.h
| | | |   M	src/shogun/modelselection/GradientModelSelection.h
| | | |   M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
| | | |   M	src/shogun/multiclass/tree/RelaxedTree.h
| | | |   M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | | |   M	src/shogun/regression/GaussianProcessRegression.cpp
| | | |   M	src/shogun/regression/GaussianProcessRegression.h
| | | |   M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | |   M	src/shogun/regression/gp/GaussianLikelihood.h
| | | |   M	src/shogun/regression/gp/InferenceMethod.h
| | | |   M	src/shogun/regression/gp/LikelihoodModel.h
| | | |       
* | | |   commit 8c987fde6de515dbc26e19f33200321d262b2539
|\ \ \ \  Merge: a805d7f 822204d
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Mon Aug 13 05:06:23 2012 -0700
| | | | | 
| | | | |     Merge pull request #699 from uricamic/BM_SOL_EXAMPLE
| | | | |     
| | | | |     Proximal Point P-BMRM (multiple cutting plane models) + documentation fixes
| | | | |      
| * | | | commit 822204d9883d6901afcf26633480b821f25cbe81
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Mon Aug 13 11:02:50 2012 +0200
| | | | | 
| | | | |     Fixed problems with DirectorRiskFunction + doxygen warnings
| | | | | 
| | | | | M	src/shogun/structure/DirectorRiskFunction.cpp
| | | | | M	src/shogun/structure/DirectorRiskFunction.h
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | | M	src/shogun/structure/MulticlassRiskFunction.cpp
| | | | | M	src/shogun/structure/MulticlassRiskFunction.h
| | | | | M	src/shogun/structure/RiskFunction.h
| | | | |      
| * | | | commit 79dae5b3439730531e9c5066cb4c3258b06c2322
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Sun Aug 12 18:22:08 2012 +0200
| | | | | 
| | | | |     DualLibQPBMSOSVM multiclass simple python example
| | | | | 
| | | | | A	examples/undocumented/python_modular/so_multiclass_BMRM.py
| | | | |      
| * | | | commit b84b3c07916efc6a952c7ad41fc2fad75aa5033c
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Sun Aug 12 18:20:28 2012 +0200
| | | | | 
| | | | |     Added DualLibQPBMSOSVM to modular
| | | | | 
| | | | | M	src/interfaces/modular/Structure.i
| | | | | M	src/interfaces/modular/Structure_includes.i
| | | | |      
| * | | | commit 32a909a4e0db5404309aa36851e5c5447ff79ff7
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Fri Aug 10 16:41:41 2012 +0200
| | | | | 
| | | | |     Multiclass example for all BMRM algorithms
| | | | | 
| | | | | M	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | | | |      
| * | | | commit 6d7ea12cb524a05a5f27a00e70e4123063fc22ab
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Fri Aug 10 10:29:08 2012 +0200
| | | | | 
| | | | |     Stopping condition set only with non-zero alpha
| | | | | 
| | | | | M	src/shogun/structure/libp3bm.cpp
| | | | | M	src/shogun/structure/libppbm.cpp
| | | | |      
| * | | | commit cc65e7e81b43936b4dff2ecf2bf59a3354db1f62
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Fri Aug 10 09:48:29 2012 +0200
| | | | | 
| | | | |     work on comments
| | | | | 
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | | M	src/shogun/structure/libbmrm.cpp
| | | | | M	src/shogun/structure/libbmrm.h
| | | | | M	src/shogun/structure/libp3bm.cpp
| | | | | M	src/shogun/structure/libp3bm.h
| | | | | M	src/shogun/structure/libppbm.cpp
| | | | | M	src/shogun/structure/libppbm.h
| | | | |      
| * | | | commit 5118e9867b27d13a73497129e24b0fced3d81214
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Thu Aug 9 13:48:00 2012 +0200
| | | | | 
| | | | |     Documentation for BMRM related things
| | | | | 
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | | M	src/shogun/structure/MulticlassRiskFunction.h
| | | | | M	src/shogun/structure/RiskFunction.h
| | | | | M	src/shogun/structure/libbmrm.h
| | | | | M	src/shogun/structure/libp3bm.h
| | | | | M	src/shogun/structure/libppbm.h
| | | | |      
| * | | | commit d092487fd69ca62943e3abfa5fd88651ec17ac13
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Thu Aug 9 00:29:22 2012 +0200
| | | | | 
| | | | |     Multiple cutting plane models (P3BMRM) algorithm + support for passing user data to RiskFunction
| | | | | 
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | | M	src/shogun/structure/MulticlassRiskFunction.cpp
| | | | | M	src/shogun/structure/MulticlassRiskFunction.h
| | | | | M	src/shogun/structure/RiskFunction.cpp
| | | | | M	src/shogun/structure/RiskFunction.h
| | | | | M	src/shogun/structure/libbmrm.cpp
| | | | | M	src/shogun/structure/libbmrm.h
| | | | | A	src/shogun/structure/libp3bm.cpp
| | | | | A	src/shogun/structure/libp3bm.h
| | | | | M	src/shogun/structure/libppbm.cpp
| | | | | M	src/shogun/structure/libppbm.h
| | | | |      
* | | | | commit a805d7f6668a4303ab0f6441df92db69ecd70834
|/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | |   Date:   Mon Aug 13 01:38:20 2012 +0400
| | | |   
| | | |       Fixed map memory handling for sgvector value case
| | | |   
| | | |   M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | | |   M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| | | |   M	src/shogun/lib/Map.h
| | | |     
* | | | commit a2eff5944d5049dd071248bd9ed994ca0a64fd40
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Aug 12 16:23:09 2012 +0400
| | | | 
| | | |     Fixed static KRR examples (KRR -> KernelRidgeRegression)
| | | | 
| | | | M	examples/undocumented/cmdline_static/regression_krr.sg
| | | | M	examples/undocumented/matlab_and_octave/regression_krr.m
| | | | M	examples/undocumented/python_static/regression_krr.py
| | | | M	examples/undocumented/r_static/regression_krr.R
| | | |     
* | | | commit 55982245ba31763b5db83967e9e870a642c4cdfc
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Aug 12 16:11:34 2012 +0400
| | | | 
| | | |     A few doc fixes
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/lib/IndexBlockRelation.h
| | | | M	src/shogun/lib/IndexBlockTree.h
| | | | M	src/shogun/machine/Machine.h
| | | | M	src/shogun/modelselection/ModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTreeNodeData.h
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/svr/LibLinearRegression.h
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | M	src/shogun/ui/GUILabels.h
| | | |       
* | | |   commit 5206ce1dd2ee2dfea3dddfbef2cdf3befb23a419
|\ \ \ \  Merge: 6cf79ef cff8ff6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Aug 12 03:14:50 2012 -0700
| | | | | 
| | | | |     Merge pull request #700 from vigsterkr/utest
| | | | |     
| | | | |     Add unit test for SVMOcas
| | | | |      
| * | | | commit cff8ff6eb5ce503ef03b150f787cf033759c21ae
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Sun Aug 12 10:59:11 2012 +0200
| | | | | 
| | | | |     Fix doxygen descrition in the header of DataGenerator
| | | | | 
| | | | | M	src/shogun/features/DataGenerator.h
| | | | |      
| * | | | commit bebc04e09703405d44a013af8226852eeecfdc6f
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Fri Aug 10 11:57:30 2012 +0200
| | | | | 
| | | | |     Add Gaussian generator in DataGenerator
| | | | |     and add unit test based on DataGenerator for SVMOcas
| | | | | 
| | | | | M	src/shogun/features/DataGenerator.cpp
| | | | | M	src/shogun/features/DataGenerator.h
| | | | | M	tests/unit/classifier/svm/SVMOcas_unittest.cc
| | | | |      
| * | | | commit 529eea934e64b8aae2d5dacb671f3463733da8c3
| | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | Date:   Thu Aug 9 15:01:50 2012 +0200
| | | | | 
| | | | |     Add unit test for SVMOcas
| | | | | 
| | | | | A	tests/unit/classifier/svm/SVMOcas_unittest.cc
| | | | |      
* | | | | commit 6cf79effc7166dd9bc25fbf39e44e4a72d4add03
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 03:58:53 2012 +0400
| | | | | 
| | | | |     Moved string kernels to separate dir
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | | M	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
| | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | M	src/interfaces/modular/Kernel.i
| | | | | M	src/interfaces/modular/Kernel_includes.i
| | | | | D	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | D	src/shogun/kernel/CommUlongStringKernel.h
| | | | | D	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | D	src/shogun/kernel/CommWordStringKernel.h
| | | | | D	src/shogun/kernel/DistantSegmentsKernel.cpp
| | | | | D	src/shogun/kernel/DistantSegmentsKernel.h
| | | | | D	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | D	src/shogun/kernel/FixedDegreeStringKernel.h
| | | | | D	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | D	src/shogun/kernel/GaussianMatchStringKernel.h
| | | | | D	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | D	src/shogun/kernel/HistogramWordStringKernel.h
| | | | | D	src/shogun/kernel/LinearStringKernel.cpp
| | | | | D	src/shogun/kernel/LinearStringKernel.h
| | | | | D	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | D	src/shogun/kernel/LocalAlignmentStringKernel.h
| | | | | D	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | D	src/shogun/kernel/LocalityImprovedStringKernel.h
| | | | | D	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | D	src/shogun/kernel/MatchWordStringKernel.h
| | | | | D	src/shogun/kernel/OligoStringKernel.cpp
| | | | | D	src/shogun/kernel/OligoStringKernel.h
| | | | | D	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | D	src/shogun/kernel/PolyMatchStringKernel.h
| | | | | D	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | D	src/shogun/kernel/PolyMatchWordStringKernel.h
| | | | | D	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | D	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | | | D	src/shogun/kernel/SNPStringKernel.cpp
| | | | | D	src/shogun/kernel/SNPStringKernel.h
| | | | | D	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | D	src/shogun/kernel/SalzbergWordStringKernel.h
| | | | | D	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | D	src/shogun/kernel/SimpleLocalityImprovedStringKernel.h
| | | | | D	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | D	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | | | D	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | D	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | | | D	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | D	src/shogun/kernel/SpectrumRBFKernel.h
| | | | | D	src/shogun/kernel/StringKernel.h
| | | | | D	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | D	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | | | D	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | D	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | | | D	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | D	src/shogun/kernel/WeightedDegreeStringKernel.h
| | | | | M	src/shogun/kernel/normalizer/DiceKernelNormalizer.h
| | | | | M	src/shogun/kernel/normalizer/SqrtDiagKernelNormalizer.h
| | | | | M	src/shogun/kernel/normalizer/TanimotoKernelNormalizer.h
| | | | | A	src/shogun/kernel/string/CommUlongStringKernel.cpp
| | | | | A	src/shogun/kernel/string/CommUlongStringKernel.h
| | | | | A	src/shogun/kernel/string/CommWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/CommWordStringKernel.h
| | | | | A	src/shogun/kernel/string/DistantSegmentsKernel.cpp
| | | | | A	src/shogun/kernel/string/DistantSegmentsKernel.h
| | | | | A	src/shogun/kernel/string/FixedDegreeStringKernel.cpp
| | | | | A	src/shogun/kernel/string/FixedDegreeStringKernel.h
| | | | | A	src/shogun/kernel/string/GaussianMatchStringKernel.cpp
| | | | | A	src/shogun/kernel/string/GaussianMatchStringKernel.h
| | | | | A	src/shogun/kernel/string/HistogramWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/HistogramWordStringKernel.h
| | | | | A	src/shogun/kernel/string/LinearStringKernel.cpp
| | | | | A	src/shogun/kernel/string/LinearStringKernel.h
| | | | | A	src/shogun/kernel/string/LocalAlignmentStringKernel.cpp
| | | | | A	src/shogun/kernel/string/LocalAlignmentStringKernel.h
| | | | | A	src/shogun/kernel/string/LocalityImprovedStringKernel.cpp
| | | | | A	src/shogun/kernel/string/LocalityImprovedStringKernel.h
| | | | | A	src/shogun/kernel/string/MatchWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/MatchWordStringKernel.h
| | | | | A	src/shogun/kernel/string/OligoStringKernel.cpp
| | | | | A	src/shogun/kernel/string/OligoStringKernel.h
| | | | | A	src/shogun/kernel/string/PolyMatchStringKernel.cpp
| | | | | A	src/shogun/kernel/string/PolyMatchStringKernel.h
| | | | | A	src/shogun/kernel/string/PolyMatchWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/PolyMatchWordStringKernel.h
| | | | | A	src/shogun/kernel/string/RegulatoryModulesStringKernel.cpp
| | | | | A	src/shogun/kernel/string/RegulatoryModulesStringKernel.h
| | | | | A	src/shogun/kernel/string/SNPStringKernel.cpp
| | | | | A	src/shogun/kernel/string/SNPStringKernel.h
| | | | | A	src/shogun/kernel/string/SalzbergWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/SalzbergWordStringKernel.h
| | | | | A	src/shogun/kernel/string/SimpleLocalityImprovedStringKernel.cpp
| | | | | A	src/shogun/kernel/string/SimpleLocalityImprovedStringKernel.h
| | | | | A	src/shogun/kernel/string/SparseSpatialSampleStringKernel.cpp
| | | | | A	src/shogun/kernel/string/SparseSpatialSampleStringKernel.h
| | | | | A	src/shogun/kernel/string/SpectrumMismatchRBFKernel.cpp
| | | | | A	src/shogun/kernel/string/SpectrumMismatchRBFKernel.h
| | | | | A	src/shogun/kernel/string/SpectrumRBFKernel.cpp
| | | | | A	src/shogun/kernel/string/SpectrumRBFKernel.h
| | | | | A	src/shogun/kernel/string/StringKernel.h
| | | | | A	src/shogun/kernel/string/WeightedCommWordStringKernel.cpp
| | | | | A	src/shogun/kernel/string/WeightedCommWordStringKernel.h
| | | | | A	src/shogun/kernel/string/WeightedDegreePositionStringKernel.cpp
| | | | | A	src/shogun/kernel/string/WeightedDegreePositionStringKernel.h
| | | | | A	src/shogun/kernel/string/WeightedDegreeStringKernel.cpp
| | | | | A	src/shogun/kernel/string/WeightedDegreeStringKernel.h
| | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |      
* | | | | commit 52369c94056dcceae1942fbdcd9fae3054898a2a
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 02:38:10 2012 +0400
| | | | | 
| | | | |     Updated data submodule
| | | | | 
| | | | | M	data
| | | | |      
* | | | | commit 97c9a872618a3858d26dda2a34911f32f375de77
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 02:25:03 2012 +0400
| | | | | 
| | | | |     Fixed wrong type of directed risk function method ignore
| | | | | 
| | | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | |      
* | | | | commit bb9493f19fd254d13e52d6cc821c614cb642db80
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 02:19:21 2012 +0400
| | | | | 
| | | | |     A few doc warning fixes
| | | | | 
| | | | | M	src/shogun/distance/Distance.h
| | | | | M	src/shogun/evaluation/GradientCriterion.h
| | | | | M	src/shogun/evaluation/GradientEvaluation.h
| | | | | M	src/shogun/labels/LatentLabels.h
| | | | | M	src/shogun/latent/LatentModel.h
| | | | |      
* | | | | commit 346f445591d9a488482785a4530431fadaf3c4cc
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 02:06:28 2012 +0400
| | | | | 
| | | | |     Added ignore for risk_directed failing in csharp modular
| | | | | 
| | | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | |      
* | | | | commit dbc76e8a9a34fac895547c84390ccb29bf38bb04
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 01:52:16 2012 +0400
| | | | | 
| | | | |     Added an error message for add_subtask
| | | | | 
| | | | | M	src/shogun/transfer/multitask/Task.cpp
| | | | |      
* | | | | commit c561e46319fab7b79ff7d1a81a829d4bd6ae745b
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sun Aug 12 01:44:16 2012 +0400
| | | | | 
| | | | |     Fixed memory handling issues in multitask module
| | | | | 
| | | | | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | | | M	src/shogun/transfer/multitask/TaskGroup.cpp
| | | | | M	src/shogun/transfer/multitask/TaskTree.cpp
| | | | |      
* | | | | commit 949e7c95b5ec64f0872b26628e3ee995e70f7276
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Aug 11 23:13:30 2012 +0400
| | | | | 
| | | | |     Added directored risk function
| | | | | 
| | | | | M	src/interfaces/modular/Structure.i
| | | | | M	src/interfaces/modular/Structure_includes.i
| | | | | A	src/shogun/structure/DirectorRiskFunction.cpp
| | | | | A	src/shogun/structure/DirectorRiskFunction.h
| | | | |      
* | | | | commit bbf8c1fa70ad42f1354bd44b485be6f2159abcdc
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Aug 11 22:38:06 2012 +0400
| | | | | 
| | | | |     Added SLEP doc
| | | | | 
| | | | | M	src/shogun/lib/slep/slep_solver.h
| | | | |      
* | | | | commit 98c92564957d6a63fcf3becac772d1835f2f6ea9
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Aug 11 22:16:04 2012 +0400
| | | | | 
| | | | |     Fixed a few doc warnings
| | | | | 
| | | | | M	src/shogun/classifier/AveragedPerceptron.h
| | | | | M	src/shogun/classifier/NearestCentroid.h
| | | | | M	src/shogun/classifier/Perceptron.h
| | | | | M	src/shogun/classifier/PluginEstimate.h
| | | | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | | M	src/shogun/classifier/svm/SVM.h
| | | | | M	src/shogun/classifier/svm/SVMLin.h
| | | | | M	src/shogun/classifier/svm/SVMOcas.h
| | | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | | M	src/shogun/classifier/svm/SubGradientSVM.h
| | | | | M	src/shogun/classifier/svm/WDSVMOcas.h
| | | | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | | M	src/shogun/kernel/Kernel.h
| | | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | | M	src/shogun/kernel/ProductKernel.h
| | | | | M	src/shogun/machine/StructuredOutputMachine.h
| | | | | M	src/shogun/modelselection/GradientModelSelection.h
| | | | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | | | M	src/shogun/multiclass/MulticlassSVM.h
| | | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | | M	src/shogun/regression/KernelRidgeRegression.h
| | | | | M	src/shogun/regression/LeastAngleRegression.h
| | | | | M	src/shogun/regression/LeastSquaresRegression.h
| | | | | M	src/shogun/regression/LinearRidgeRegression.h
| | | | | M	src/shogun/regression/svr/LibSVR.h
| | | | | M	src/shogun/regression/svr/MKLRegression.h
| | | | | M	src/shogun/regression/svr/SVRLight.h
| | | | |      
* | | | | commit cc1c80db41c27d4cbb8f7f4c0893641437cf64f5
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Aug 11 22:15:23 2012 +0400
| | | | | 
| | | | |     Updated data
| | | | | 
| | | | | M	data
| | | | |      
* | | | | commit 4666b79e6771f3da19422b8aa59efc415257f992
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Aug 11 22:14:06 2012 +0400
| | | | | 
| | | | |     Updated testsuite
| | | | | 
| | | | | M	tests/regression/python_modular/classifier.py
| | | | | M	tests/regression/python_modular/clustering.py
| | | | | M	tests/regression/python_modular/kernel.py
| | | | | M	tests/regression/python_modular/regression.py
| | | | |        
* | | | |   commit b88994d3c31d5db81849d35f3d9d6f178f72802e
|\ \ \ \ \  Merge: ae5d490 f059754
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 08:06:19 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #706 from karlnapf/master
| | | | | |     
| | | | | |     more minor fixes and graphical examples
| | | | | |       
| * | | | | commit f059754d276498defec6cdbdfe3658b03d71eb95
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 16:04:26 2012 +0100
| | | | | | 
| | | | | |     minor corrections
| | | | | | 
| | | | | | M	src/shogun/statistics/HSIC.cpp
| | | | | |       
| * | | | | commit ecd0b70a6083229e86a6dc0b60fc35bd7129fcf6
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 16:04:14 2012 +0100
| | | | | | 
| | | | | |     added graphical examples for linear time mmd with mean shift
| | | | | |     and HSIC with rotation
| | | | | | 
| | | | | | A	examples/undocumented/python_modular/graphical/statistics_hsic.py
| | | | | | A	examples/undocumented/python_modular/graphical/statistics_linear_time_mmd.py
| | | | | |       
| * | | | | commit 68fe52f536190d6f565bccc22ac0320f15fe8f54
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 16:03:48 2012 +0100
| | | | | | 
| | | | | |     minor updates
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd_mean_shift.py
| | | | | |       
| * | | | | commit 196408ae60912123d937586666a615684045cf29
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 16:03:37 2012 +0100
| | | | | | 
| | | | | |     renamed file
| | | | | | 
| | | | | | D	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | | | | A	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd_mean_shift.py
| | | | | |       
| * | | | | commit 3614379fa28eb4486518c1951ec0c1c0b2a969e3
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 15:09:14 2012 +0100
| | | | | | 
| | | | | |     fixed a typo
| | | | | | 
| | | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | | |         
* | | | | |   commit ae5d4905af54385020948a3ae33a1c2c1fd179b7
|\ \ \ \ \ \  Merge: a0e2bb9 913e17b
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Sat Aug 11 06:43:36 2012 -0700
| | | | | |   
| | | | | |       Merge pull request #705 from karlnapf/master
| | | | | |       
| | | | | |       documentation updates for CStatistics class
| | | | | |       
| * | | | | commit 913e17b182480ebd8569ce2a869c5daff3048628
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 14:42:48 2012 +0100
| | | | | | 
| | | | | |     fixed a bunch of modular warnings
| | | | | | 
| | | | | | M	src/shogun/evaluation/GradientCriterion.h
| | | | | | M	src/shogun/evaluation/GradientResult.h
| | | | | | M	src/shogun/evaluation/MachineEvaluation.h
| | | | | | M	src/shogun/modelselection/GradientModelSelection.h
| | | | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | | | | M	src/shogun/statistics/HSIC.h
| | | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | | |       
| * | | | | commit 5e285eac62e840edd8532af246a61a732598c19c
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 14:29:20 2012 +0100
| | | | | | 
| | | | | |     massive documentation updates in order to convert ascii art to latex for doxygen
| | | | | | 
| | | | | | M	src/shogun/mathematics/Statistics.h
| | | | | |         
* | | | | |   commit a0e2bb9a201ad6310813616ad4efd35771ee835f
|\ \ \ \ \ \  Merge: 9ddf049 42992b0
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Sat Aug 11 04:21:25 2012 -0700
| | | | | |   
| | | | | |       Merge pull request #704 from karlnapf/master
| | | | | |       
| | | | | |       bugfix
| | | | | |       
| * | | | | commit 42992b042f34a58e376a7ef099262099f5ec4fec
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 12:19:27 2012 +0100
| | | | | | 
| | | | | |     added m*MMD correction for quadratic time MMD statistic
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | | | |       
| * | | | | commit d3c42f6fc5a5bb1f20c4495fb6d80b75b1e9138a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 12:18:15 2012 +0100
| | | | | | 
| | | | | |     added correction for m*MMD change in quadratic time MMD
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | | |       
| * | | | | commit 2f96a8a04009a321322d19afe91e902a26562842
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 11 12:17:56 2012 +0100
| | | | | | 
| | | | | |     changed the quadratic time MMD to return m*MMD in compute_statistic()
| | | | | |     since all null-approximations also fir m*MMD distirbution
| | | | | | 
| | | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | | |       
| * | | | | commit d02ad13f3a9c940221f35e2c67ff5c76c0f6ae96
|/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Sat Aug 11 12:17:31 2012 +0100
| | | | |   
| | | | |       comment updates
| | | | |   
| | | | |   M	src/shogun/statistics/HSIC.h
| | | | |        
* | | | |   commit 9ddf049c0d23d5822c59640718754486c7dd9300
|\ \ \ \ \  Merge: baebab2 6c5b634
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri Aug 10 15:30:35 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #703 from gsomix/buffer_protocol
| | | | | |     
| | | | | |     Python buffer protocol for Labels and SGVector
| | | | | |       
| * | | | | commit 6c5b634725c5b85bd8ef5ee6b3910eeecb34dcf6
| | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | Date:   Sat Aug 11 01:02:09 2012 +0400
| | | | | | 
| | | | | |     protocols for Labels and SGVector
| | | | | | 
| | | | | | D	examples/undocumented/python_modular/features_director_dot__modular.py
| | | | | | D	examples/undocumented/python_modular/features_director_dot_modular.py
| | | | | | M	src/interfaces/modular/Features.i
| | | | | | M	src/interfaces/modular/Library.i
| | | | | | M	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | | | | M	src/interfaces/python_modular/DenseLabels_protocols.i
| | | | | | A	src/interfaces/python_modular/SGVector_protocols.i
| | | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | | |       
| * | | | | commit 8cebdf6c04fade550352afe30434d90670429d7f
| | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | Date:   Fri Aug 10 00:33:20 2012 +0400
| | | | | | 
| | | | | |     added buffer_info structure for memory management in protocols
| | | | | | 
| | | | | | A	src/interfaces/python_modular/DenseFeatures_protocols.i
| | | | | | A	src/interfaces/python_modular/DenseLabels_protocols.i
| | | | | | D	src/interfaces/python_modular/ProtoDenseFeatures.i
| | | | | | D	src/interfaces/python_modular/ProtoHelper.i
| | | | | | D	src/interfaces/python_modular/ProtoSGVector.i
| | | | | | A	src/interfaces/python_modular/protocols_helper.i
| | | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | | |       
| * | | | | commit 1604259a27976730c440c305a3033ad7f23ea356
| | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | Date:   Thu Aug 9 18:58:07 2012 +0400
| | | | | | 
| | | | | |     preliminary design of protocols for Labels
| | | | | | 
| | | | | | M	src/interfaces/modular/Features.i
| | | | | | M	src/interfaces/modular/Library.i
| | | | | | M	src/interfaces/python_modular/ProtoDenseFeatures.i
| | | | | | M	src/interfaces/python_modular/ProtoHelper.i
| | | | | | M	src/interfaces/python_modular/ProtoSGVector.i
| | | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | | |       
| * | | | | commit 796f3f06a110403f7880ead9b56355d909493678
|/ / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | |   Date:   Wed Jul 25 18:38:09 2012 +0400
| | | | |   
| | | | |       added python protocol for SGVector
| | | | |   
| | | | |   A	examples/undocumented/python_modular/features_director_dot_modular.py
| | | | |   M	src/interfaces/modular/Library.i
| | | | |   A	src/interfaces/python_modular/ProtoDenseFeatures.i
| | | | |   A	src/interfaces/python_modular/ProtoHelper.i
| | | | |   A	src/interfaces/python_modular/ProtoSGVector.i
| | | | |   D	src/interfaces/python_modular/python_protocols.i
| | | | |   M	src/interfaces/python_modular/swig_typemaps.i
| | | | |        
* | | | |   commit baebab20204a56f08d74f385c8a86fd197f11722
|\ \ \ \ \  Merge: 7bb72c9 1dda304
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 10 10:16:43 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #702 from karlnapf/master
| | | | | |     
| | | | | |     graphical example for quadratic time mmd test
| | | | | |       
| * | | | | commit 1dda304de5848a47e481eba9dea5c7ec751ef099
|/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Fri Aug 10 18:13:52 2012 +0100
| | | | |   
| | | | |       first sketch for a graphical example of quadratic time MMD tests
| | | | |   
| | | | |   A	examples/undocumented/python_modular/graphical/statistics_quadratic_time_mmd.py
| | | | |      
* | | | | commit 7bb72c9bccf37517b62e49db08671cb37b41d979
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Fri Aug 10 04:04:56 2012 +0400
| | | | | 
| | | | |     Filled in some doc to avoid warnings
| | | | | 
| | | | | M	src/shogun/base/SGObject.h
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | M	src/shogun/lib/SGReferencedData.h
| | | | | M	src/shogun/lib/SGVector.h
| | | | | M	src/shogun/modelselection/ModelSelectionOutput.h
| | | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | | M	src/shogun/modelselection/RandomSearchModelSelection.h
| | | | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.h
| | | | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| | | | | M	src/shogun/transfer/multitask/MultitaskLinearMachine.h
| | | | |      
* | | | | commit 356cfcf3279ca26b1161c86e10c686489ca8be45
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Fri Aug 10 01:01:49 2012 +0400
| | | | | 
| | | | |     Fixed MultitaskCompositeMachine train locked
| | | | | 
| | | | | M	src/shogun/transfer/multitask/MultitaskCompositeMachine.cpp
| | | | |      
* | | | | commit df8cd27a47b784ff7bd4cc4faa6d602901da012c
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Fri Aug 10 00:03:53 2012 +0400
| | | | | 
| | | | |     A few warning fixes
| | | | | 
| | | | | M	src/shogun/evaluation/MachineEvaluation.h
| | | | | M	src/shogun/features/Features.h
| | | | | M	src/shogun/labels/Labels.h
| | | | | M	src/shogun/lib/DynamicArray.h
| | | | | M	src/shogun/lib/Map.h
| | | | | M	src/shogun/lib/SGMatrix.h
| | | | | M	src/shogun/lib/SGReferencedData.h
| | | | | M	src/shogun/lib/SGSparseMatrix.h
| | | | | M	src/shogun/lib/SGString.h
| | | | | M	src/shogun/lib/SGVector.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/machine/LinearMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | | |      
* | | | | commit c3843f911fcaa848cd7e55c14b80cfdda303c008
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 9 23:10:54 2012 +0400
| | | | | 
| | | | |     Reformatted HKM
| | | | | 
| | | | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | | | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| | | | |        
* | | | |   commit 7b2a2b8c48132ae583c84a1a80fbc42198b43ed3
|\ \ \ \ \  Merge: 10a0961 8948ff2
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 9 10:29:44 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #701 from karlnapf/master
| | | | | |     
| | | | | |     fixed some warnings and updated documentation in CStatistics
| | | | | |       
| * | | | | commit 8948ff2b1bf4d8c4ef8af35c1f556ee10a760a37
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 9 18:26:36 2012 +0100
| | | | | | 
| | | | | |     fixed a warning
| | | | | | 
| | | | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| | | | | |       
| * | | | | commit 583225009d3b71db87a3d28bdf0b5388842ea26c
|/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Thu Aug 9 18:26:28 2012 +0100
| | | | |   
| | | | |       fixed some warnings and documentation updates in doxygen latex
| | | | |   
| | | | |   M	src/shogun/mathematics/Statistics.h
| | | | |      
* | | | | commit 10a0961a5a2d7f86034b346b6cdf9f2ef211686d
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 9 18:05:13 2012 +0400
| | | | | 
| | | | |     A few doc improvements for malsar based multitask algorithms
| | | | | 
| | | | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.h
| | | | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| | | | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.h
| | | | |      
* | | | | commit 443f89f79f3e252ed2ef95c96eaee204782bd7b0
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 9 17:12:40 2012 +0400
| | | | | 
| | | | |     Updated tutorial submodule
| | | | | 
| | | | | M	doc/tutorial
| | | | |      
* | | | | commit 4286acedbe61198b2d156368c95bcd5bd451d0a9
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Thu Aug 9 17:12:15 2012 +0400
| | | | | 
| | | | |     A few doc improvements for task api
| | | | | 
| | | | | M	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| | | | | M	src/shogun/transfer/multitask/Task.h
| | | | | M	src/shogun/transfer/multitask/TaskGroup.h
| | | | | M	src/shogun/transfer/multitask/TaskRelation.h
| | | | | M	src/shogun/transfer/multitask/TaskTree.h
| | | | |      
* | | | | commit 5e6379204aa17e32feadccba659ad9b884497a4d
|/ / / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | |   Date:   Thu Aug 9 15:47:37 2012 +0400
| | | |   
| | | |       Added multitask ROC evaluation
| | | |   
| | | |   M	src/interfaces/modular/Transfer.i
| | | |   M	src/interfaces/modular/Transfer_includes.i
| | | |   M	src/shogun/evaluation/CrossValidation.cpp
| | | |   M	src/shogun/evaluation/Evaluation.h
| | | |   M	src/shogun/evaluation/ROCEvaluation.cpp
| | | |   M	src/shogun/evaluation/ROCEvaluation.h
| | | |   A	src/shogun/transfer/multitask/MultitaskROCEvaluation.cpp
| | | |   A	src/shogun/transfer/multitask/MultitaskROCEvaluation.h
| | | |       
* | | |   commit d699fc5362fb21d5d49bcca0240d5604785231b3
|\ \ \ \  Merge: 4b11e44 490741f
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Aug 9 01:35:23 2012 -0700
| | | |   
| | | |       Merge pull request #698 from pluskid/multiclass
| | | |       
| | | |       renaming java modular: euclidian => euclidean
| | | |     
| * | | commit 490741f83b1434262e735b1ecbcb66a87171ab8d
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Thu Aug 9 15:17:50 2012 +0800
| | | | 
| | | |     fix template class of CPT in java modular.
| | | | 
| | | | M	src/interfaces/modular/Multiclass.i
| | | | M	src/interfaces/modular/Multiclass_includes.i
| | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | A	src/shogun/multiclass/tree/ConditionalProbabilityTreeNodeData.h
| | | |     
| * | | commit e1a50de1071b7987e72c5cefb362b8463bc888d5
|/ / /  Author: Chiyuan Zhang <pluskid@gmail.com>
| | |   Date:   Thu Aug 9 14:54:59 2012 +0800
| | |   
| | |       renaming java modular: euclidian => euclidean
| | |   
| | |   A	examples/undocumented/java_modular/distance_euclidean_modular.java
| | |   D	examples/undocumented/java_modular/distance_euclidian_modular.java
| | |    
* | | commit 4b11e448f39b1b581f245f07fd6afc5e04e41263
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Aug 9 06:27:59 2012 +0200
| |   
| |       add a couple of missing %templates to Multiclass.i
| |   
| |   M	src/interfaces/modular/Multiclass.i
| |   M	src/interfaces/modular/Multiclass_includes.i
| |   M	src/interfaces/modular/modshogun_ignores.i
| |   M	src/shogun/multiclass/tree/RelaxedTree.h
| |   M	src/shogun/multiclass/tree/TreeMachineNode.h
| |     
* |   commit ac8c5ba2950a33f61086b7940f28ae70c1afa26a
|\ \  Merge: f342b7d 8c1eeea
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 8 14:35:42 2012 -0700
| | | 
| | |     Merge pull request #696 from iglesias/master
| | |     
| | |     A few warnings fixed
| | |    
| * | commit 8c1eeea546933d3b97bcb338bb2c4d7f67646166
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Wed Aug 8 23:02:33 2012 +0200
| |   
| |       * minor fixes for doc warnings
| |   
| |   M	src/shogun/base/DynArray.h
| |   M	src/shogun/labels/StructuredLabels.h
| |   M	src/shogun/lib/DynamicArray.h
| |   M	src/shogun/lib/DynamicObjectArray.h
| |   M	src/shogun/lib/StructuredData.h
| |   M	src/shogun/structure/MulticlassModel.h
| |   M	src/shogun/structure/StructuredModel.h
| |     
* |   commit f342b7d0445e07c262a87a1a9f8545f0ca39b63f
|\ \  Merge: 05719ba 2cebf0a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 8 13:55:12 2012 -0700
| | | 
| | |     Merge pull request #695 from vigsterkr/master
| | |     
| | |     Mountain Lion changed API of scandir
| | |    
| * | commit 2cebf0ac6e7e26fbc4f0a79b7c1c51c7b216e83c
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Wed Aug 8 22:48:02 2012 +0200
| | | 
| | |     check for osx version a little bit smarter
| | |     requested by Soeren
| | | 
| | | M	src/shogun/io/SGIO.h
| | |    
| * | commit 5e2d78386cdbc586d8b99c7ff6f4822c8fd222c2
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Wed Aug 8 20:26:04 2012 +0200
| | | 
| | |     Mountain Lion changed API of scandir
| | |     The API of scandir has been changed in OSX 10.8 in a way that
| | |     it's the same as in other linux distros. Without this fix shogun
| | |     will not compile on OSX 10.8
| | | 
| | | M	src/shogun/io/SGIO.h
| | |    
* | | commit 05719ba98a8277aea5772255105137fa5fcef66f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Aug 9 00:43:20 2012 +0400
| | | 
| | |     Added a few non-sgobject ignores to modular
| | | 
| | | M	src/interfaces/modular/modshogun_ignores.i
| | |    
* | | commit d1d2d12517613d2a3a01a373083671c166ff204f
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Aug 8 22:00:18 2012 +0200
| |   
| |       mention BaseMulticlassMachine in Relaxed tree to get python_modular
| |       interfaces to work
| |   
| |   M	src/shogun/machine/BaseMulticlassMachine.h
| |   M	src/shogun/machine/MulticlassMachine.h
| |   M	src/shogun/multiclass/tree/RelaxedTree.h
| |   
* | commit 47a593d688a40a5ce0201e3431d66cc47ff7cbde
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 8 19:43:17 2012 +0200
| | 
| |     add tree business to modular interfaces
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| |     
* |   commit 5bb850611c3531db9de7b608e129d22cb47d3f91
|\ \  Merge: be0b772 9296faf
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Aug 8 09:26:42 2012 -0700
| | | 
| | |     Merge pull request #694 from karlnapf/master
| | |     
| | |     added test for HSIC bootstrapping
| | |    
| * | commit 9296faf8e9bb8188088b7b4fb85f1a4e9524725d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Aug 8 17:25:40 2012 +0100
| | | 
| | |     added test for bootstrapping
| | | 
| | | M	examples/undocumented/libshogun/statistics_hsic.cpp
| | |    
| * | commit c9ba8b6f93a8b4b07d4a22bc6f5e3b01959d7a2e
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Aug 8 17:22:33 2012 +0100
| |   
| |       added debug messages
| |   
| |   M	src/shogun/statistics/HSIC.cpp
| |   M	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| |   M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| |     
* |   commit be0b7726c8ee987a6487d87eb0335bad0cd9882d
|\ \  Merge: 3bf7da4 d80c8e9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 8 05:48:21 2012 -0700
| | | 
| | |     Merge pull request #693 from pluskid/multiclass
| | |     
| | |     Fix typo and some warnings
| | |    
| * | commit d80c8e9d4fb5a2c26860c1b79c6f66e6e2fb4b61
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 8 18:35:28 2012 +0800
| | | 
| | |     euclidian => euclidean in examples.
| | | 
| | | M	examples/undocumented/cmdline_static/classifier_knn.sg
| | | M	examples/undocumented/cmdline_static/clustering_hierarchical.sg
| | | M	examples/undocumented/cmdline_static/clustering_kmeans.sg
| | | M	examples/undocumented/cmdline_static/distance_euclidean.sg
| | | M	examples/undocumented/cmdline_static/kernel_distance.sg
| | | M	examples/undocumented/csharp_modular/classifier_knn_modular.cs
| | | M	examples/undocumented/csharp_modular/clustering_hierarchical_modular.cs
| | | M	examples/undocumented/csharp_modular/clustering_kmeans_modular.cs
| | | M	examples/undocumented/csharp_modular/distance_euclidian_modular.cs
| | | M	examples/undocumented/csharp_modular/distance_normsquared_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_cauchy_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_circular_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_distance_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_inversemultiquadric_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_log_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_multiquadric_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_power_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_rationalquadratic_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_spherical_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_tstudent_modular.cs
| | | M	examples/undocumented/csharp_modular/kernel_wave_modular.cs
| | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | M	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | | M	examples/undocumented/java_modular/distance_euclidian_modular.java
| | | M	examples/undocumented/java_modular/distance_normsquared_modular.java
| | | M	examples/undocumented/java_modular/kernel_cauchy_modular.java
| | | M	examples/undocumented/java_modular/kernel_circular_modular.java
| | | M	examples/undocumented/java_modular/kernel_distance_modular.java
| | | M	examples/undocumented/java_modular/kernel_exponential_modular.java
| | | M	examples/undocumented/java_modular/kernel_inversemultiquadric_modular.java
| | | M	examples/undocumented/java_modular/kernel_log_modular.java
| | | M	examples/undocumented/java_modular/kernel_multiquadric_modular.java
| | | M	examples/undocumented/java_modular/kernel_power_modular.java
| | | M	examples/undocumented/java_modular/kernel_rationalquadratic_modular.java
| | | M	examples/undocumented/java_modular/kernel_spherical_modular.java
| | | M	examples/undocumented/java_modular/kernel_tstudent_modular.java
| | | M	examples/undocumented/java_modular/kernel_wave_modular.java
| | | M	examples/undocumented/libshogun/classifier_nearest_centroid.cpp
| | | M	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	examples/undocumented/matlab_and_octave/classifier_knn.m
| | | M	examples/undocumented/matlab_and_octave/clustering_hierarchical.m
| | | M	examples/undocumented/matlab_and_octave/clustering_kmeans.m
| | | M	examples/undocumented/matlab_and_octave/distance_euclidian.m
| | | M	examples/undocumented/matlab_and_octave/graphical/cluster_hierarchical.m
| | | M	examples/undocumented/matlab_and_octave/graphical/cluster_kmeans.m
| | | M	examples/undocumented/matlab_and_octave/kernel_distance.m
| | | M	examples/undocumented/octave_modular/classifier_knn_modular.m
| | | M	examples/undocumented/octave_modular/clustering_hierarchical_modular.m
| | | M	examples/undocumented/octave_modular/clustering_kmeans_modular.m
| | | M	examples/undocumented/octave_modular/distance_euclidian_modular.m
| | | M	examples/undocumented/octave_modular/distance_sparseeuclidian_modular.m
| | | M	examples/undocumented/octave_modular/kernel_distance_modular.m
| | | M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | M	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| | | M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| | | M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| | | M	examples/undocumented/python_modular/distance_director_euclidian_modular.py
| | | M	examples/undocumented/python_modular/distance_euclidian_modular.py
| | | M	examples/undocumented/python_modular/distance_normsquared_modular.py
| | | M	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | M	examples/undocumented/python_modular/graphical/cluster_kmeans.py
| | | M	examples/undocumented/python_modular/graphical/interactive_clustering_demo.py
| | | M	examples/undocumented/python_modular/kernel_cauchy_modular.py
| | | M	examples/undocumented/python_modular/kernel_circular_modular.py
| | | M	examples/undocumented/python_modular/kernel_distance_modular.py
| | | M	examples/undocumented/python_modular/kernel_exponential_modular.py
| | | M	examples/undocumented/python_modular/kernel_inversemultiquadric_modular.py
| | | M	examples/undocumented/python_modular/kernel_log_modular.py
| | | M	examples/undocumented/python_modular/kernel_multiquadric_modular.py
| | | M	examples/undocumented/python_modular/kernel_power_modular.py
| | | M	examples/undocumented/python_modular/kernel_rationalquadratic_modular.py
| | | M	examples/undocumented/python_modular/kernel_spherical_modular.py
| | | M	examples/undocumented/python_modular/kernel_tstudent_modular.py
| | | M	examples/undocumented/python_modular/kernel_wave_modular.py
| | | M	examples/undocumented/python_static/classifier_knn.py
| | | M	examples/undocumented/python_static/clustering_hierarchical.py
| | | M	examples/undocumented/python_static/clustering_kmeans.py
| | | M	examples/undocumented/python_static/distance_euclidian.py
| | | M	examples/undocumented/r_modular/classifier_knn_modular.R
| | | M	examples/undocumented/r_modular/kernel_distance_modular.R
| | | M	examples/undocumented/r_static/classifier_knn.R
| | | M	examples/undocumented/r_static/clustering_hierarchical.R
| | | M	examples/undocumented/r_static/clustering_kmeans.R
| | | M	examples/undocumented/r_static/distance_euclidian.R
| | | M	examples/undocumented/r_static/kernel_distance.R
| | | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | |    
| * | commit 5495ec0bd82ab51864b1bac4dc473c50becbded2
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 8 18:31:18 2012 +0800
| | | 
| | |     fix some warnings in relaxed tree.
| | | 
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
* | | commit 3bf7da4a5413ef2f263aab6f37de558631c1280c
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Aug 8 11:38:23 2012 +0200
| |   
| |       remove cleanup exit point
| |   
| |   M	doc/tutorial
| |   M	src/shogun/lib/slep/slep_solver.cpp
| |     
* |   commit aa0bab77b4df81f3ef7d60db64835ecc360188f7
|\ \  Merge: cb99343 3e6e9af
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 8 02:23:12 2012 -0700
| | | 
| | |     Merge pull request #692 from pluskid/fix-typo
| | |     
| | |     Fix typo: Euclidian => Euclidean
| | |    
| * | commit 3e6e9afdb928094c0be8736d5327c521d9734b63
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 8 17:14:57 2012 +0800
| | | 
| | |     euclidian -> euclidean
| | | 
| | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | M	src/shogun/distance/AttenuatedEuclideanDistance.h
| | | M	src/shogun/distance/Distance.h
| | | M	src/shogun/distance/EuclideanDistance.h
| | | M	src/shogun/distance/SparseEuclideanDistance.h
| | | M	src/shogun/ui/GUIDistance.cpp
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
| * | commit 48d3466c727da10d18719f67f7db842200387bb5
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Aug 5 21:06:11 2012 +0800
| | | 
| | |     fix KNN bug.
| | | 
| | | M	src/shogun/features/DenseFeatures.cpp
| | | M	src/shogun/features/SubsetStack.cpp
| | | M	src/shogun/features/SubsetStack.h
| | |    
| * | commit f9fc4755dd4a620fda78de44a21fe9001496fae1
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sat Aug 4 17:42:00 2012 +0800
| | | 
| | |     fix DenseFeatures segfault.
| | | 
| | | M	src/shogun/features/DenseFeatures.cpp
| | |    
| * | commit e093e83867fff49da4bcbe6ea25286d1f930cfdb
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sat Aug 4 17:26:29 2012 +0800
| | | 
| | |     fix GMM typo.
| | | 
| | | M	src/shogun/clustering/GMM.cpp
| | |    
| * | commit 2779d91b15b17b8496ef1af46a155f62f762c50f
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sat Aug 4 16:56:51 2012 +0800
| | | 
| | |     rename typo: Euclidian => Euclidean
| | | 
| | | M	src/interfaces/modular/Distance.i
| | | M	src/interfaces/modular/Distance_includes.i
| | | M	src/shogun/converter/EmbeddingConverter.cpp
| | | M	src/shogun/converter/LocallyLinearEmbedding.h
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | A	src/shogun/distance/AttenuatedEuclideanDistance.cpp
| | | A	src/shogun/distance/AttenuatedEuclideanDistance.h
| | | D	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | D	src/shogun/distance/AttenuatedEuclidianDistance.h
| | | M	src/shogun/distance/DirectorDistance.h
| | | M	src/shogun/distance/Distance.h
| | | A	src/shogun/distance/EuclideanDistance.cpp
| | | A	src/shogun/distance/EuclideanDistance.h
| | | D	src/shogun/distance/EuclidianDistance.cpp
| | | D	src/shogun/distance/EuclidianDistance.h
| | | M	src/shogun/distance/MinkowskiMetric.h
| | | A	src/shogun/distance/SparseEuclideanDistance.cpp
| | | A	src/shogun/distance/SparseEuclideanDistance.h
| | | D	src/shogun/distance/SparseEuclidianDistance.cpp
| | | D	src/shogun/distance/SparseEuclidianDistance.h
| | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | M	src/shogun/ui/GUIDistance.cpp
| | |    
* | | commit cb99343a78bfff58faf0e8fed0edd5f151525b42
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 8 11:15:04 2012 +0200
| | | 
| | |     fix const mismatch in attribute features get_feature type/class size
| | |     functions
| | | 
| | | M	src/shogun/features/AttributeFeatures.h
| | |    
* | | commit 5ab7f26f4f08c4ac9b5a2a18da7a15c6416b79a0
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 8 11:14:49 2012 +0200
| | | 
| | |     remove get_mean function (mean is public anyways)
| | | 
| | | M	src/shogun/evaluation/CrossValidation.h
| | |    
* | | commit 6dbd12df36d2b2fc8396fc7ffdf49c5efacd1293
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Aug 8 11:08:17 2012 +0200
| |   
| |       add missing $ to fix doc
| |   
| |   M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| |   
* | commit 23feacaffca10e6a5825a3e2a10143e53399ff33
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 8 03:23:57 2012 +0400
| | 
| |     Removed relaxed tree from modular
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| |   
* | commit a099c287a9fda3c40332625ee2b1fe6a32e8d90e
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 8 03:00:29 2012 +0400
| | 
| |     Yet another attempt to fix compilation with relaxed tree
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/shogun/multiclass/tree/RelaxedTree.h
| |   
* | commit 081ebb3cd0facbe7fd3e2697a786c0ff7fc620e3
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 8 02:50:15 2012 +0400
| | 
| |     An another attempt to fix compilation
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| |   
* | commit 5bc1a7d0de026de3721e6f99f6d2eac2f3f73c50
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 8 02:39:17 2012 +0400
| | 
| |     Attempt to fix relaxed tree compilation
| | 
| | M	src/shogun/multiclass/tree/RelaxedTree.h
| |   
* | commit 5025ef152461e231d8ce3d2136a0783749067fc1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 8 00:04:04 2012 +0200
| | 
| |     remove zero width unicode whitespace causing build failures
| | 
| | M	src/shogun/statistics/HSIC.h
| |   
* | commit 91bbe7e71d7b1f81a6feec0dd9952c40656a35fc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Aug 8 01:55:15 2012 +0400
| | 
| |     Restored mystery objective calculation code in slep
| | 
| | M	src/shogun/lib/slep/slep_solver.cpp
| |   
* | commit 71a7c9ce9b040e2280aa884233ffe6891c5350da
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Aug 7 22:23:16 2012 +0400
| | 
| |     Added get mean to CVResult
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| |     
* |   commit a345a5d4c6aa92156140c02d21f8621427c72aa1
|\ \  Merge: d5bbf37 946feed
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 7 10:48:07 2012 -0700
| | | 
| | |     Merge pull request #691 from karlnapf/master
| | |     
| | |     efficient bootstrapping for kernel independence tests
| | |    
| * | commit 946feedfed242c92a6b11a6b6e8f88816c9c0c1e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 7 18:45:57 2012 +0100
| | | 
| | |     -added documentation
| | |     -added efficient bootstrapping via polymorphism
| | | 
| | | M	src/shogun/statistics/HSIC.cpp
| | | M	src/shogun/statistics/HSIC.h
| | | M	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | | M	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | |    
| * | commit 7d7076350f0e9580a08dfa9e575fbbd1738e7131
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 7 18:45:24 2012 +0100
| | | 
| | |     doc update
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |    
| * | commit 2a05bce78de42bfe8feaa1ec6c4978a17015973a
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Aug 7 18:45:18 2012 +0100
| |   
| |       doc update
| |   
| |   M	src/shogun/statistics/QuadraticTimeMMD.h
| |     
* |   commit d5bbf37e16fa71a68ea3e517dc2291878a63e9b8
|\ \  Merge: 646d8d8 3c40d1e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 7 10:18:50 2012 -0700
| | | 
| | |     Merge pull request #679 from pluskid/multiclass
| | |     
| | |     Relaxed Tree
| | |    
| * | commit 3c40d1e02a0976ba0f5ab1ef1553d468f46d04a2
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Aug 7 22:26:10 2012 +0800
| | | 
| | |     Added some description of the parameters.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 804114820d7a41528e5289f2fe021a8d0ddb50f3
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Aug 7 22:17:18 2012 +0800
| | | 
| | |     use multiclassAccuracy::get_confusion_matrix
| | | 
| | | M	src/shogun/evaluation/MulticlassAccuracy.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | |    
| * | commit 5993b2480f77d6ee80fdb8a27dbc28bd37043a19
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Aug 7 22:03:12 2012 +0800
| | | 
| | |     several readability improvements.
| | | 
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/kernel/GaussianKernel.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | |    
| * | commit daf2a13b6f976405864341dca332a9c261abba46
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Aug 7 21:46:41 2012 +0800
| | | 
| | |     remove kernel factory.
| | | 
| | | D	src/shogun/kernel/GenericKernelFactory.h
| | | D	src/shogun/kernel/KernelFactory.h
| | |    
| * | commit e998b74d9195872ac6444c9c180991fba639b1e2
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Aug 6 18:34:29 2012 +0800
| | | 
| | |     use CSVM instead of CLibSVM.
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | M	examples/undocumented/python_modular/classifier_multiclass_relaxedtree.py
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/kernel/GaussianKernel.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 706e86e363919ffa077fe0398e1fb9a762d2cea5
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Aug 6 17:46:28 2012 +0800
| | | 
| | |     use kernel->shalow_copy instead of a kernel factory.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 9dfcfb0ffb4b5e345160539e1b1a2e3811689065
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Aug 6 17:38:15 2012 +0800
| | | 
| | |     ensure shalow_copy of CGaussianKernel not be called in any child.
| | | 
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | |    
| * | commit c22eed2cca083d2e39d75da4e12129ba40472117
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Aug 6 17:34:38 2012 +0800
| | | 
| | |     shalow_copy for GaussianKernel
| | | 
| | | M	.gitignore
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/kernel/GaussianKernel.h
| | |    
| * | commit 66ff8a1c325ed03fdb84eceac766747c3443ab8e
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sat Aug 4 17:12:02 2012 +0800
| | | 
| | |     fix compile error in Relaxed Tree.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 1d74145ea549794777b5fe1ce7966da70eec5577
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 1 21:03:40 2012 +0800
| | | 
| | |     fix some typos
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/TreeMachine.h
| | |    
| * | commit 11389ecba1d8f3a41d847355329f8bcaebb9bd54
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 1 20:37:18 2012 +0800
| | | 
| | |     remove unnecessary SG_REF/UNREF for unused local variable
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | |    
| * | commit c69baafd94ac8a273d671085dc0bb79f30bc4ea8
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 1 20:36:29 2012 +0800
| | | 
| | |     use shogun evaluation for eval.
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | |    
| * | commit 84dcea214331d493f569438da2dbc9710314d377
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Aug 1 20:30:16 2012 +0800
| | | 
| | |     remove pthread flag in libshogun makefile.
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| * | commit 322685ebbfcdf45330d8c624cd71aa8797d50404
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Jul 30 22:26:23 2012 +0800
| | | 
| | |     Added python modular for Relaxed Tree
| | | 
| | | A	examples/undocumented/python_modular/classifier_multiclass_relaxedtree.py
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/interfaces/modular/Multiclass_includes.i
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 8a30ff6bcbfa7bade4ce8b36439823377abd6395
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Jul 29 17:34:39 2012 +0800
| | | 
| | |     remove debug code.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit 714da66c0fe9671672b1ca2f5e81d7c95ceecc06
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Jul 29 17:33:38 2012 +0800
| | | 
| | |     better handling of single class
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | |    
| * | commit d1ce23f6e64f01739d3cc93962f96422b88cebe5
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Jul 29 17:10:59 2012 +0800
| | | 
| | |     use KernelFactory to make a new kernel for each submachine.
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | A	src/shogun/kernel/GenericKernelFactory.h
| | | A	src/shogun/kernel/KernelFactory.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | |    
| * | commit ab2fad00c089d0b47f7bbb14d48a002cb00e1777
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 27 18:41:55 2012 +0800
| | | 
| | |     better way to obtain # support vectors
| | | 
| | | M	src/shogun/classifier/svm/LibSVM.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit 055bac52056d968f287efdbc0f6dbc5778804ddc
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 26 16:23:16 2012 +0800
| | | 
| | |     fix a bug in Relaxed Tree
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit a9f1d2be5fdbd62ebe16fa48b3206aaf63d6372d
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Jul 25 17:00:05 2012 +0800
| | | 
| | |     test training on relaxed tree.
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit aa6410d38f66a874f5269a8fbd736d34d6d11024
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Jul 25 16:30:31 2012 +0800
| | | 
| | |     classification for relaxed tree.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 1d28ec734d4bfa54d3a7c7a86a80a3504cfc607d
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Jul 24 17:01:04 2012 +0800
| | | 
| | |     hierarchical training of relaxed tree.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | |    
| * | commit eb8ae6b28cedadd5ee29b507c0956210d20498e4
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Jul 24 16:04:45 2012 +0800
| | | 
| | |     move node_t definition to TreeMachine.
| | | 
| | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/TreeMachine.h
| | |    
| * | commit 62b53f44ebe8038aa1b2c92074bff588d84dafed
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue Jul 24 15:43:52 2012 +0800
| | | 
| | |     Relaxed Tree: compute score of models.
| | | 
| | | M	src/shogun/classifier/svm/LibSVM.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit da3eaa8b8167fd2efa0e974e1695ffde8828c2ee
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 16:23:10 2012 +0800
| | | 
| | |     ported the function color_label_space.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit 911f456566520058baff9dd2f47823dcf3fccd46
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 16:17:48 2012 +0800
| | | 
| | |     relaxedtree: enforce lower constraints
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit dab12565dc31069c2f21a44c09c06bb90e6dcde2
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 15:53:27 2012 +0800
| | | 
| | |     relaxed tree: enforce constraints upper.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit dbf46711e41a5a9651099c968675ed4bf767a1a9
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 15:23:26 2012 +0800
| | | 
| | |     Added sorted_index to SGVector.
| | | 
| | | M	src/shogun/lib/SGVector.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit 407df54756917be5948a4d4272270181513b07ad
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 15:10:15 2012 +0800
| | | 
| | |     added find_if to SGVector
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | | M	src/shogun/lib/SGVector.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 877117be8e0deafe3a4b2c6dbc6d14d9296112d6
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 20 14:28:05 2012 +0800
| | | 
| | |     Added find utility for SGVector.
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | | M	src/shogun/lib/SGVector.h
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 1037b98bf0cda1ea9247ac3288165c8c1fc0a654
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 19 15:33:36 2012 +0800
| | | 
| | |     apply libsvm for binary classification.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | |    
| * | commit 95922355443a8f90e8086876d07f047590128f91
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 19 15:09:57 2012 +0800
| | | 
| | |     initialize label space coloring of Relaxed Tree
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit f5db5e2879d5eb7b6ba29e86db58cb7f3268ac43
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Jul 15 19:27:24 2012 +0800
| | | 
| | |     alternating optimization of RelaxedTree
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit 3eb3a6ee0180e472701a73836bfd6b28159afdca
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun Jul 15 17:33:57 2012 +0800
| | | 
| | |     the svm train step in relaxed tree.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit e06995c8051e9e90bb11d94f9d709b8a504fd55f
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 13 20:26:23 2012 +0800
| | | 
| | |     bottom up initialization of relaxed tree.
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit eea0de06eae95560eb719e0ce62f5daa5cf30a4c
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 13 18:48:32 2012 +0800
| | | 
| | |     added an (currently empty) RelaxedTree libshogun example.
| | | 
| | | A	examples/undocumented/libshogun/classifier_multiclass_relaxedtree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.h
| | |    
| * | commit c726de71636754c197d035913649b706ea2d250f
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 13 17:03:09 2012 +0800
| | | 
| | |     estimate confusion matrix of Relaxed Tree
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit bc41584e3882466d24327f42c5de8f346bbcbbb9
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri Jul 13 16:41:43 2012 +0800
| | | 
| | |     skeleton for relaxed tree
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTree.h
| | |    
| * | commit f46eb297fc140ac03615a0fc469e9dfac5563efd
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 12 15:21:39 2012 +0800
| | | 
| | |     skeleton for RelaxedTree Machine.
| | | 
| | | A	src/shogun/multiclass/tree/RelaxedTree.cpp
| | | A	src/shogun/multiclass/tree/RelaxedTree.h
| | | A	src/shogun/multiclass/tree/RelaxedTreeNodeData.h
| | | M	src/shogun/multiclass/tree/TreeMachine.h
| | |    
| * | commit 77e927637c10fbeeb9d660f83b45da25d7e51ddd
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 12 14:52:23 2012 +0800
| | | 
| | |     estimate confusion matrix for relaxed-tree.
| | | 
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | | M	src/shogun/multiclass/tree/RelaxedTreeUtil.h
| | |    
| * | commit 784e98a560e8a6086ca3a90ac19c0ecbcc78f364
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu Jul 12 14:31:36 2012 +0800
| | | 
| | |     Added helper utility for Relaxed Tree
| | | 
| | | A	src/shogun/multiclass/tree/RelaxedTreeUtil.cpp
| | | A	src/shogun/multiclass/tree/RelaxedTreeUtil.h
| | |      
* | |   commit 646d8d8d50f75205e1b8810691563c2c55838c08
|\ \ \  Merge: 3af3329 57c76db
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 09:13:55 2012 -0700
| | | | 
| | | |     Merge pull request #690 from karlnapf/master
| | | |     
| | | |     various improvements
| | | |     
| * | | commit 57c76db5d4744f8bc2e1be2b04fef77d823f1adf
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:08:31 2012 +0100
| | | | 
| | | |     changed bootstrapping again. now its really elegant :)
| | | | 
| | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |     
| * | | commit 9048167bccc8229b9d3583d07deb1fe7ae4355c7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:08:12 2012 +0100
| | | | 
| | | |     doc updates
| | | | 
| | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | | |     
| * | | commit 0b4268bd0cc21441de6bc0093ab0cbd0e8ecf24a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:08:03 2012 +0100
| | | | 
| | | |     intendation
| | | | 
| | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | | |     
| * | | commit 5e8a8f4b4420927c9b1a504b49cf7d9f46ea509e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:07:51 2012 +0100
| | | | 
| | | |     doc update
| | | | 
| | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| | | |     
| * | | commit 722de415edc1c0247aad6e08b642e40a254dff73
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:07:29 2012 +0100
| | | | 
| | | |     made example work for recent bootstrapping changes
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit 6b3efa6b3de835906a41ad3a0e2d60d73e3d8ec1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:07:12 2012 +0100
| | | | 
| | | |     removed removing subsets in init method (breaks subsetted custom kernels)
| | | | 
| | | | M	src/shogun/kernel/CustomKernel.cpp
| | | |     
| * | | commit b8dcaa770c628ba860a6b8c94b94a5531e099c12
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:06:50 2012 +0100
| | | | 
| | | |     white space
| | | | 
| | | | M	src/shogun/kernel/CustomKernel.h
| | | |     
| * | | commit 1498d0832c161974c1e2a55e3537da17edc13df5
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 7 17:06:17 2012 +0100
| | | | 
| | | |     initial add
| | | | 
| | | | A	examples/undocumented/libshogun/kernel_custom_kernel.cpp
| | | |     
| * | | commit 80be05b5bf96da8fc2c09d90b032b67d043e35a7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 6 17:57:47 2012 +0100
| | | | 
| | | |     updated my contributions
| | | | 
| | | | M	src/CONTRIBUTIONS
| | | |     
| * | | commit 5d15b5e1279574a159b1610c7feb66fd330c8174
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Mon Aug 6 17:56:33 2012 +0100
| | |   
| | |       added possibility to custommize gmock-config location
| | |   
| | |   M	src/configure
| | |    
* | | commit 3af3329a6e73f030fbd0465e87c5a4c028508e74
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Aug 7 15:26:21 2012 +0400
| | | 
| | |     Fixes for slep based multitask
| | | 
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | |    
* | | commit fb93440c21ad5d7a42b6f2f178afc123166270cb
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Tue Aug 7 01:34:15 2012 +0400
| |   
| |       Crossvalidation support for SLEP based multitask
| |   
| |   M	src/shogun/lib/slep/slep_options.h
| |   M	src/shogun/lib/slep/slep_solver.cpp
| |   M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.h
| |   M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| |   M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| |   M	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| |   M	src/shogun/transfer/multitask/MultitaskLinearMachine.h
| |   M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| |   M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.h
| |   M	src/shogun/transfer/multitask/TaskGroup.cpp
| |   M	src/shogun/transfer/multitask/TaskGroup.h
| |   M	src/shogun/transfer/multitask/TaskRelation.h
| |   M	src/shogun/transfer/multitask/TaskTree.cpp
| |   M	src/shogun/transfer/multitask/TaskTree.h
| |   
* | commit cd1f70cfecd073f91010642884f6fa2ca111f824
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 5 20:02:18 2012 +0200
| | 
| |     adjust paths to tests in generator
| | 
| | M	tests/regression/python_modular/generator.py
| |   
* | commit 3462abe6979e27dcf92c4b83f4043cca5763756e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 5 11:48:15 2012 +0200
| | 
| |     adjust symlinks for regression tests
| | 
| | M	tests/regression/data
| | M	tests/regression/tests
| |   
* | commit 4ec77d80012857ffdeb8eae2c6314699f160a683
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 4 20:44:08 2012 +0200
| | 
| |     fix %ignore - SGVector is of type index_t not float...
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit f513ae0cc314956dc39a5a7f8b66639f062e44aa
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 22:28:03 2012 +0400
| | 
| |     Fixed syntax error in includes
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 4efd4e966518e928daac51e48d215e95e24f3d1b
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 22:17:40 2012 +0400
| | 
| |     Restored size(), ignored cast operators and ignored KMM constructor in csharp
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| | M	src/shogun/lib/SGVector.h
| |   
* | commit 18b4d74636d1bb95dc3e5f5f898cced4ba441435
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 4 19:26:46 2012 +0200
| | 
| |     add '\n' at end of error msg
| | 
| | M	src/shogun/base/Parameter.cpp
| |   
* | commit d7a2b116bb3fefb75ccff12817919d49c15d0ecb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 4 19:24:26 2012 +0200
| | 
| |     fix path to regression tests in makefile
| | 
| | M	src/Makefile.template
| |   
* | commit c07a8a1f62cbd4b5897d8eafdf8b098ef06a59ce
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 16:11:48 2012 +0400
| | 
| |     Fixed wrong size() call
| | 
| | M	src/shogun/statistics/KernelMeanMatching.cpp
| |   
* | commit b65dad36802264fc5cb63ded2436831f23178ebd
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 16:04:56 2012 +0400
| | 
| |     Removed size() of sgvector
| | 
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/statistics/KernelMeanMatching.cpp
| |   
* | commit 9bf02e0995f378926b1a9a5799f61aaf9faa0820
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 04:14:23 2012 +0400
| | 
| |     Fixed inference method crasher
| | 
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| |   
* | commit ebf738c3fca7d6524c1beecd9bac6048c139514a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 04:10:27 2012 +0400
| | 
| |     Added KMM example
| | 
| | A	examples/undocumented/python_modular/statistics_kmm.py
| |   
* | commit a686d8c75783f49c6ada03ea3204fd74a999dd75
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 04:09:47 2012 +0400
| | 
| |     Introduced Kernel Mean Matching
| | 
| | M	src/interfaces/modular/Statistics.i
| | M	src/interfaces/modular/Statistics_includes.i
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/lib/external/libqp_gsmo.cpp
| | A	src/shogun/statistics/KernelMeanMatching.cpp
| | A	src/shogun/statistics/KernelMeanMatching.h
| |   
* | commit a79170d593d99745a6ce8cbcd5f88cdf064c83b3
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 02:30:59 2012 +0400
| | 
| |     Get GMM back to work again
| | 
| | M	src/interfaces/modular/Clustering.i
| | M	src/interfaces/modular/Clustering_includes.i
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/GMM.h
| |   
* | commit 3d625786d9fbcd8273b197a0e11744bd81da42db
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Aug 4 01:34:25 2012 +0400
| | 
| |     Revert "drop GMM - it abuses SGVector to store Gaussians"
| |     
| |     This reverts commit eac52492afee835922c942673de8c3adb23e801b.
| | 
| | M	src/interfaces/modular/Distribution.i
| | M	src/interfaces/modular/Distribution_includes.i
| | A	src/shogun/clustering/GMM.cpp
| | A	src/shogun/clustering/GMM.h
| |     
* |   commit 13785f408b3d1d4cfe3e37a5f269703617d96aab
|\ \  Merge: 61ff3da afc77dc
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Fri Aug 3 14:27:11 2012 -0700
| |   
| |       Merge pull request #689 from puffin444/master
| |       
| |       Put python gaussian process regression demo in graphical folder.
| |   
| * commit afc77dc3c6c54ca8f210b6546117c89675040a64
|/  Author: puffin444 <walke434@msu.edu>
|   Date:   Fri Aug 3 16:57:27 2012 -0500
|   
|       Put gaussian process regression demo in proper folder
|   
|   A	examples/undocumented/python_modular/graphical/regression_gaussian_process_demo.py
|   D	examples/undocumented/python_modular/regression_gaussian_process_demo.py
|  
* commit 61ff3daa6366c65fa45426f19486789764e6bde8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 3 16:44:03 2012 +0200
| 
|     fix include path: base/config.h -> lib/config.h
| 
| M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
|  
* commit d02abd49cc050596dd9e1bcc09e14236d7984275
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 3 14:59:19 2012 +0200
| 
|     ifdef examples requiring NLOPT with HAVE_NLOPT
| 
| M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
|  
* commit fe8dddc971f98eb0bf8200ef9de50f1276262b3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 3 14:46:34 2012 +0200
| 
|     ifdev have_eigen3 regression_gaussian_process_fitc.cpp example
| 
| M	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
|    
*   commit 5847502840dc0b3c67c55360d20612e8460ba716
|\  Merge: 5e4b294 ed46678
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Aug 3 05:34:43 2012 -0700
| | 
| |     Merge pull request #667 from vigsterkr/utest
| |     
| |     [WIP] First attempt to add unit testing to Shogun Unit testing based on Google C++ Testing Framework
| |   
| * commit ed46678a6abdef5945449e3621233d63cd269b0a
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Mon Jul 23 20:26:52 2012 +0000
| | 
| |     Use random vectors instead of predefined ones
| | 
| | M	tests/unit/lib/SGVector_unittest.cc
| |   
| * commit a12068633198112398743291e91fa57e99572a01
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Mon Jul 23 01:08:33 2012 +0000
| | 
| |     A very simple mock example
| | 
| | M	tests/unit/base/main_unittest.cc
| | A	tests/unit/latent/LatentSVM_unittest.cc
| | A	tests/unit/latent/MockLatentModel.h
| |   
| * commit 50539540b3260a69eb353c53c58b9246d67259b4
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sun Jul 22 22:54:51 2012 +0000
| | 
| |     Use google mocking fw instead of testing fw Google c++ mocking framework comes with a bundled c++ unit testing framework of google, but mocking fw allows more complex unit tests
| | 
| | M	src/Makefile
| | M	src/configure
| | M	tests/unit/Makefile
| |   
| * commit aa4c56ce19522281696411e3a8d5b2fdbb134f4d
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sun Jul 22 22:43:30 2012 +0000
| | 
| |     Move unit tests and regression tests under ./tests
| | 
| | M	.gitignore
| | M	src/Makefile
| | M	src/Makefile.template
| | D	src/shogun/base/main_unittest.cc
| | D	src/shogun/lib/SGVector_unittest.cc
| | A	tests/regression/README
| | A	tests/regression/cmdline_static/test.sg
| | A	tests/regression/cmdline_static/test_all.sh
| | A	tests/regression/data
| | A	tests/regression/generate_testdata.py
| | A	tests/regression/generator/__init__.py
| | A	tests/regression/generator/category.py
| | A	tests/regression/generator/classifier.py
| | A	tests/regression/generator/clustering.py
| | A	tests/regression/generator/dataop.py
| | A	tests/regression/generator/distance.py
| | A	tests/regression/generator/distribution.py
| | A	tests/regression/generator/featop.py
| | A	tests/regression/generator/fileop.py
| | A	tests/regression/generator/kernel.py
| | A	tests/regression/generator/preproc.py
| | A	tests/regression/generator/regression.py
| | A	tests/regression/libshogun/test_all.sh
| | A	tests/regression/lua_modular/generator.lua
| | A	tests/regression/matlab_and_octave/classifier.m
| | A	tests/regression/matlab_and_octave/clustering.m
| | A	tests/regression/matlab_and_octave/distance.m
| | A	tests/regression/matlab_and_octave/distribution.m
| | A	tests/regression/matlab_and_octave/kernel.m
| | A	tests/regression/matlab_and_octave/preproc.m
| | A	tests/regression/matlab_and_octave/regression.m
| | A	tests/regression/matlab_and_octave/test_all.sh
| | A	tests/regression/matlab_and_octave/test_one.sh
| | A	tests/regression/matlab_and_octave/util/check_accuracy.m
| | A	tests/regression/matlab_and_octave/util/convert_features_and_add_preproc.m
| | A	tests/regression/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_distance_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/fix_regression_name_inconsistency.m
| | A	tests/regression/matlab_and_octave/util/globals.m
| | A	tests/regression/matlab_and_octave/util/set_distance.m
| | A	tests/regression/matlab_and_octave/util/set_features.m
| | A	tests/regression/matlab_and_octave/util/set_kernel.m
| | A	tests/regression/matlab_and_octave/util/tobool.m
| | A	tests/regression/matlab_static
| | A	tests/regression/octave_modular/classifier.m
| | A	tests/regression/octave_modular/clustering.m
| | A	tests/regression/octave_modular/distance.m
| | A	tests/regression/octave_modular/distribution.m
| | A	tests/regression/octave_modular/kernel.m
| | A	tests/regression/octave_modular/preproc.m
| | A	tests/regression/octave_modular/regression.m
| | A	tests/regression/octave_modular/test_all.sh
| | A	tests/regression/octave_modular/test_one.sh
| | A	tests/regression/octave_modular/util/check_accuracy.m
| | A	tests/regression/octave_modular/util/convert_features_and_add_preproc.m
| | A	tests/regression/octave_modular/util/globals.m
| | A	tests/regression/octave_modular/util/set_distance.m
| | A	tests/regression/octave_modular/util/set_features.m
| | A	tests/regression/octave_modular/util/set_kernel.m
| | A	tests/regression/octave_modular/util/set_pie.m
| | A	tests/regression/octave_modular/util/set_pos_and_neg.m
| | A	tests/regression/octave_modular/util/tobool.m
| | A	tests/regression/octave_static
| | A	tests/regression/python_modular/README
| | A	tests/regression/python_modular/classifier.py
| | A	tests/regression/python_modular/clustering.py
| | A	tests/regression/python_modular/distance.py
| | A	tests/regression/python_modular/distribution.py
| | A	tests/regression/python_modular/generator.py
| | A	tests/regression/python_modular/kernel.py
| | A	tests/regression/python_modular/preprocessor.py
| | A	tests/regression/python_modular/regression.py
| | A	tests/regression/python_modular/test_all.sh
| | A	tests/regression/python_modular/test_one.py
| | A	tests/regression/python_modular/test_svm_kernel_multiple.py
| | A	tests/regression/python_modular/tester.py
| | A	tests/regression/python_modular/util.py
| | A	tests/regression/python_static/classifier.py
| | A	tests/regression/python_static/clustering.py
| | A	tests/regression/python_static/distance.py
| | A	tests/regression/python_static/distribution.py
| | A	tests/regression/python_static/kernel.py
| | A	tests/regression/python_static/preproc.py
| | A	tests/regression/python_static/regression.py
| | A	tests/regression/python_static/test_all.sh
| | A	tests/regression/python_static/test_one.py
| | A	tests/regression/python_static/test_svm_kernel_multiple.py
| | A	tests/regression/python_static/util.py
| | A	tests/regression/r_modular/classifier.R
| | A	tests/regression/r_modular/clustering.R
| | A	tests/regression/r_modular/distance.R
| | A	tests/regression/r_modular/distribution.R
| | A	tests/regression/r_modular/kernel.R
| | A	tests/regression/r_modular/preproc.R
| | A	tests/regression/r_modular/regression.R
| | A	tests/regression/r_modular/test_all.sh
| | A	tests/regression/r_modular/test_one.R
| | A	tests/regression/r_modular/test_one.sh
| | A	tests/regression/r_modular/util/check_accuracy.R
| | A	tests/regression/r_modular/util/convert_features_and_add_preproc.R
| | A	tests/regression/r_modular/util/get_distance.R
| | A	tests/regression/r_modular/util/get_features.R
| | A	tests/regression/r_modular/util/get_kernel.R
| | A	tests/regression/r_modular/util/get_pie.R
| | A	tests/regression/r_modular/util/get_posneg.R
| | A	tests/regression/r_modular/util/read_mfile.R
| | A	tests/regression/r_modular/util/tobool.R
| | A	tests/regression/r_static/classifier.R
| | A	tests/regression/r_static/clustering.R
| | A	tests/regression/r_static/distance.R
| | A	tests/regression/r_static/distribution.R
| | A	tests/regression/r_static/kernel.R
| | A	tests/regression/r_static/preproc.R
| | A	tests/regression/r_static/regression.R
| | A	tests/regression/r_static/test_all.sh
| | A	tests/regression/r_static/test_one.R
| | A	tests/regression/r_static/test_one.sh
| | A	tests/regression/r_static/util/check_accuracy.R
| | A	tests/regression/r_static/util/convert_features_and_add_preproc.R
| | A	tests/regression/r_static/util/fix_classifier_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_clustering_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_distance_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_kernel_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_normalizer_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_preproc_name_inconsistency.R
| | A	tests/regression/r_static/util/fix_regression_name_inconsistency.R
| | A	tests/regression/r_static/util/read_mfile.R
| | A	tests/regression/r_static/util/set_distance.R
| | A	tests/regression/r_static/util/set_features.R
| | A	tests/regression/r_static/util/set_kernel.R
| | A	tests/regression/r_static/util/tobool.R
| | A	tests/regression/test_configure.py
| | A	tests/regression/tests
| | A	tests/unit/Makefile
| | A	tests/unit/base/main_unittest.cc
| | A	tests/unit/lib/SGVector_unittest.cc
| | D	testsuite/README
| | D	testsuite/cmdline_static/test.sg
| | D	testsuite/cmdline_static/test_all.sh
| | D	testsuite/data
| | D	testsuite/generate_testdata.py
| | D	testsuite/generator/__init__.py
| | D	testsuite/generator/category.py
| | D	testsuite/generator/classifier.py
| | D	testsuite/generator/clustering.py
| | D	testsuite/generator/dataop.py
| | D	testsuite/generator/distance.py
| | D	testsuite/generator/distribution.py
| | D	testsuite/generator/featop.py
| | D	testsuite/generator/fileop.py
| | D	testsuite/generator/kernel.py
| | D	testsuite/generator/preproc.py
| | D	testsuite/generator/regression.py
| | D	testsuite/libshogun/test_all.sh
| | D	testsuite/lua_modular/generator.lua
| | D	testsuite/matlab_and_octave/classifier.m
| | D	testsuite/matlab_and_octave/clustering.m
| | D	testsuite/matlab_and_octave/distance.m
| | D	testsuite/matlab_and_octave/distribution.m
| | D	testsuite/matlab_and_octave/kernel.m
| | D	testsuite/matlab_and_octave/preproc.m
| | D	testsuite/matlab_and_octave/regression.m
| | D	testsuite/matlab_and_octave/test_all.sh
| | D	testsuite/matlab_and_octave/test_one.sh
| | D	testsuite/matlab_and_octave/util/check_accuracy.m
| | D	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| | D	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| | D	testsuite/matlab_and_octave/util/globals.m
| | D	testsuite/matlab_and_octave/util/set_distance.m
| | D	testsuite/matlab_and_octave/util/set_features.m
| | D	testsuite/matlab_and_octave/util/set_kernel.m
| | D	testsuite/matlab_and_octave/util/tobool.m
| | D	testsuite/matlab_static
| | D	testsuite/octave_modular/classifier.m
| | D	testsuite/octave_modular/clustering.m
| | D	testsuite/octave_modular/distance.m
| | D	testsuite/octave_modular/distribution.m
| | D	testsuite/octave_modular/kernel.m
| | D	testsuite/octave_modular/preproc.m
| | D	testsuite/octave_modular/regression.m
| | D	testsuite/octave_modular/test_all.sh
| | D	testsuite/octave_modular/test_one.sh
| | D	testsuite/octave_modular/util/check_accuracy.m
| | D	testsuite/octave_modular/util/convert_features_and_add_preproc.m
| | D	testsuite/octave_modular/util/globals.m
| | D	testsuite/octave_modular/util/set_distance.m
| | D	testsuite/octave_modular/util/set_features.m
| | D	testsuite/octave_modular/util/set_kernel.m
| | D	testsuite/octave_modular/util/set_pie.m
| | D	testsuite/octave_modular/util/set_pos_and_neg.m
| | D	testsuite/octave_modular/util/tobool.m
| | D	testsuite/octave_static
| | D	testsuite/python_modular/README
| | D	testsuite/python_modular/classifier.py
| | D	testsuite/python_modular/clustering.py
| | D	testsuite/python_modular/distance.py
| | D	testsuite/python_modular/distribution.py
| | D	testsuite/python_modular/generator.py
| | D	testsuite/python_modular/kernel.py
| | D	testsuite/python_modular/preprocessor.py
| | D	testsuite/python_modular/regression.py
| | D	testsuite/python_modular/test_all.sh
| | D	testsuite/python_modular/test_one.py
| | D	testsuite/python_modular/test_svm_kernel_multiple.py
| | D	testsuite/python_modular/tester.py
| | D	testsuite/python_modular/util.py
| | D	testsuite/python_static/classifier.py
| | D	testsuite/python_static/clustering.py
| | D	testsuite/python_static/distance.py
| | D	testsuite/python_static/distribution.py
| | D	testsuite/python_static/kernel.py
| | D	testsuite/python_static/preproc.py
| | D	testsuite/python_static/regression.py
| | D	testsuite/python_static/test_all.sh
| | D	testsuite/python_static/test_one.py
| | D	testsuite/python_static/test_svm_kernel_multiple.py
| | D	testsuite/python_static/util.py
| | D	testsuite/r_modular/classifier.R
| | D	testsuite/r_modular/clustering.R
| | D	testsuite/r_modular/distance.R
| | D	testsuite/r_modular/distribution.R
| | D	testsuite/r_modular/kernel.R
| | D	testsuite/r_modular/preproc.R
| | D	testsuite/r_modular/regression.R
| | D	testsuite/r_modular/test_all.sh
| | D	testsuite/r_modular/test_one.R
| | D	testsuite/r_modular/test_one.sh
| | D	testsuite/r_modular/util/check_accuracy.R
| | D	testsuite/r_modular/util/convert_features_and_add_preproc.R
| | D	testsuite/r_modular/util/get_distance.R
| | D	testsuite/r_modular/util/get_features.R
| | D	testsuite/r_modular/util/get_kernel.R
| | D	testsuite/r_modular/util/get_pie.R
| | D	testsuite/r_modular/util/get_posneg.R
| | D	testsuite/r_modular/util/read_mfile.R
| | D	testsuite/r_modular/util/tobool.R
| | D	testsuite/r_static/classifier.R
| | D	testsuite/r_static/clustering.R
| | D	testsuite/r_static/distance.R
| | D	testsuite/r_static/distribution.R
| | D	testsuite/r_static/kernel.R
| | D	testsuite/r_static/preproc.R
| | D	testsuite/r_static/regression.R
| | D	testsuite/r_static/test_all.sh
| | D	testsuite/r_static/test_one.R
| | D	testsuite/r_static/test_one.sh
| | D	testsuite/r_static/util/check_accuracy.R
| | D	testsuite/r_static/util/convert_features_and_add_preproc.R
| | D	testsuite/r_static/util/fix_classifier_name_inconsistency.R
| | D	testsuite/r_static/util/fix_clustering_name_inconsistency.R
| | D	testsuite/r_static/util/fix_distance_name_inconsistency.R
| | D	testsuite/r_static/util/fix_kernel_name_inconsistency.R
| | D	testsuite/r_static/util/fix_normalizer_name_inconsistency.R
| | D	testsuite/r_static/util/fix_preproc_name_inconsistency.R
| | D	testsuite/r_static/util/fix_regression_name_inconsistency.R
| | D	testsuite/r_static/util/read_mfile.R
| | D	testsuite/r_static/util/set_distance.R
| | D	testsuite/r_static/util/set_features.R
| | D	testsuite/r_static/util/set_kernel.R
| | D	testsuite/r_static/util/tobool.R
| | D	testsuite/test_configure.py
| | D	testsuite/tests
| |   
| * commit b0e029826188913339367012ca72d4d858efff90
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Sat Jul 21 23:44:06 2012 +0000
| | 
| |     First attempt to add unit testing to Shogun Unit testing based on Google C++ Testing Framework
| | 
| | M	.gitignore
| | M	src/Makefile
| | M	src/Makefile.template
| | M	src/configure
| | A	src/shogun/base/main_unittest.cc
| | A	src/shogun/lib/SGVector_unittest.cc
| |   
* | commit 5e4b294c8dba439741de7c98693018e9d3aa8e85
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 3 12:32:05 2012 +0200
| | 
| |     make class list generator script be aware of HAVE_EIGEN3
| | 
| | M	src/shogun/base/class_list.cpp.py
| |   
* | commit 02d643e65ab24b36b73fa8cf8cfaa11f954be9e1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 3 12:15:11 2012 +0200
| | 
| |     include eigen3 libs to fix compile failure
| | 
| | M	src/shogun/regression/gp/FITCInferenceMethod.h
| |     
* |   commit 4279e27bb88b3074b4dcf537745285adffc29041
|\ \  Merge: 19672f3 1606ac2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 2 22:38:10 2012 -0700
| | | 
| | |     Merge pull request #683 from puffin444/master
| | |     
| | |     FITC Sparse Approximation
| | |    
| * | commit 1606ac2aa79e7b41df74852681f452fdbd5b7c4f
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Mon Jul 30 02:38:16 2012 -0500
| | | 
| | |     Cleaned up some of the code
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/regression_gaussian_process_fitc.cpp
| | | M	examples/undocumented/python_modular/regression_gaussian_process_demo.py
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.h
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | |    
| * | commit e64e57183990457736d4d6991a45cf716f6f895c
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Sat Jul 28 16:39:27 2012 -0500
| | | 
| | |     FITC computations are now accurate!
| | | 
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | M	src/shogun/regression/gp/FITCInferenceMethod.h
| | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | |    
| * | commit e1015126bfe22765b3b4de82b136ad4ccc2eff50
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Mon Jul 23 00:30:41 2012 +0000
| | | 
| | |     Added FITC and visual demos.
| | | 
| | | A	examples/undocumented/python_modular/regression_gaussian_process_demo.py
| | | A	src/shogun/regression/gp/FITCInferenceMethod.cpp
| | | A	src/shogun/regression/gp/FITCInferenceMethod.h
| | |      
* | |   commit 19672f38bbe8935156363b1cb2d673c38ff707df
|\ \ \  Merge: 78c48e4 abdc4fb
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 2 22:34:34 2012 -0700
| | | | 
| | | |     Merge pull request #685 from uricamic/BM_SOL_EXAMPLE
| | | |     
| | | |     Proximal Point BMRM + ICP removal fix
| | | |     
| * | | commit abdc4fb60ceb36329d1914bfb34fa15106080bd4
| | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | Date:   Wed Aug 1 17:09:05 2012 +0200
| | | | 
| | | |     libppbm - Proximal Point BMRM solver
| | | | 
| | | | A	src/shogun/structure/libppbm.cpp
| | | | A	src/shogun/structure/libppbm.h
| | | |     
| * | | commit 4f7d73337f2faa6ac252a215c91a90fc5d112c87
| | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | Date:   Wed Aug 1 17:04:54 2012 +0200
| | | | 
| | | |     DualLibQPBMSOSVM support for new bm solver added
| | | | 
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | M	src/shogun/structure/libbmrm.cpp
| | | |     
| * | | commit 57b2791ac900e58014f99e456b7b3a6877381758
| | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | Date:   Sun Jul 29 15:30:08 2012 +0200
| | | | 
| | | |     libbmrm ICP removal fixed
| | | | 
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | M	src/shogun/structure/libbmrm.cpp
| | | | M	src/shogun/structure/libbmrm.h
| | | |     
* | | | commit 78c48e4ec97627f93ab118deee429be4cf8cc3eb
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Aug 3 03:54:19 2012 +0400
| | | | 
| | | |     Grand multitask refactoring
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/transfer_multitaskleastsquaresregression.cpp
| | | | D	examples/undocumented/libshogun/transfer_multitasklsregression.cpp
| | | | M	examples/undocumented/python_modular/transfer_multitask_leastsquares_regression.py
| | | | M	src/interfaces/modular/Transfer.i
| | | | M	src/interfaces/modular/Transfer_includes.i
| | | | M	src/shogun/machine/KernelMachine.h
| | | | M	src/shogun/machine/LinearMachine.h
| | | | M	src/shogun/machine/Machine.cpp
| | | | M	src/shogun/machine/Machine.h
| | | | A	src/shogun/transfer/multitask/MultitaskCompositeMachine.cpp
| | | | A	src/shogun/transfer/multitask/MultitaskCompositeMachine.h
| | | | D	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | | D	src/shogun/transfer/multitask/MultitaskLSRegression.h
| | | | A	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | | A	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| | | | A	src/shogun/transfer/multitask/MultitaskLinearMachine.cpp
| | | | A	src/shogun/transfer/multitask/MultitaskLinearMachine.h
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | | |     
* | | | commit a51e803b4b38afb74945b1542af6e286612306db
|/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Thu Aug 2 21:34:03 2012 +0400
| | |   
| | |       Added apply rename for libsvr
| | |   
| | |   M	src/interfaces/modular/Machine.i
| | |    
* | | commit be2d76b8b4b98ba7bfe8e05adcad468565904138
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Aug 2 03:23:11 2012 +0400
| | | 
| | |     Fixed apply method call of multitask logistic regression
| | | 
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | |    
* | | commit ef83b921566fc6269a33842578c6097c72932908
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Aug 2 02:18:50 2012 +0400
| | | 
| | |     Added mosek detection
| | | 
| | | M	src/configure
| | |    
* | | commit 235b13657ca11ef7fbf25f404d1751760ad88d1f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Aug 2 01:40:19 2012 +0400
| | | 
| | |     Fixes for multitask logistic regression
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/machine/LinearMachine.h
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | |    
* | | commit 735abe5b205afc41e65249ce04acb3001520a401
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 1 23:51:16 2012 +0400
| | | 
| | |     Fixed libshogun examples
| | | 
| | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass_mkl.cpp
| | |      
* | |   commit 36f5a2719f8d72d581723222314a4d5aadd99848
|\ \ \  Merge: 1434a79 95dd125
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 10:12:14 2012 -0700
| | | | 
| | | |     Merge pull request #687 from karlnapf/master
| | | |     
| | | |     hotfix
| | | |     
| * | | commit 95dd125145c08ad9cebaa1b9045c8dad82c5b868
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:11:20 2012 +0100
| | | | 
| | | |     removed an assertion that (still) causes trouble
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | |       
* | | |   commit 1434a79ea09aa94f7ca707798f7a410aac5579ba
|\ \ \ \  Merge: 6a311bd 621145a
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Aug 1 10:08:25 2012 -0700
| | | |   
| | | |       Merge pull request #686 from karlnapf/master
| | | |       
| | | |       precomputed kernel matrices
| | | |     
| * | | commit 621145a323869e29d240c4f4e638a63b1a74593c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:03:02 2012 +0100
| | | | 
| | | |     added test for custom kernel subsetting
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/kernel_custom.cpp
| | | |     
| * | | commit f8c15a9ec536b3c590327df288ad9494de914ba1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:02:47 2012 +0100
| | | | 
| | | |     added a test for the bootstrapping with custom kernels
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit ee0b773ae509ecca0f6a99f7f686c6aa15d1a10d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:02:27 2012 +0100
| | | | 
| | | |     -added init calls for kernel
| | | |     -overloaded bootstrapping method. For kernel based tests, bootstrapping
| | | |     now does not re-compoute kernel matrices in every iteration when a custom kernel is used
| | | | 
| | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | | |     
| * | | commit f68066d1b792de00e20f46e3b96b728690a45c21
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:01:44 2012 +0100
| | | | 
| | | |     kernels are now not initialised before computing statistic, has moved to
| | | |     KernelTwoSampleTestStatistic
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |     
| * | | commit c3bc1a18e7370783fd38b09bd4f432f0f3433bc0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Aug 1 18:00:50 2012 +0100
| | | | 
| | | |     added permute method
| | | | 
| | | | M	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/lib/SGVector.h
| | | |     
| * | | commit 014568308661f5c43bf3213020c6de561bfcfcb4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 31 18:28:27 2012 +0100
| | | | 
| | | |     reverted precomputing kernel matrices
| | | | 
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |     
| * | | commit 644ef806e4300cd02b35eefe167b0a4bcf734c9e
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 31 18:25:24 2012 +0100
| | |   
| | |       added bootstrapping for precomputed kernel matrices
| | |   
| | |   M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | |   M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | |    
* | | commit 6a311bd2cd14a6c6e1f021be10fb08fa94138913
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Aug 1 03:09:42 2012 +0400
| | | 
| | |     Moved streaming classes into a separate folder
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/Features_includes.i
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/IO_includes.i
| | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | D	src/shogun/features/StreamingDenseFeatures.cpp
| | | D	src/shogun/features/StreamingDenseFeatures.h
| | | D	src/shogun/features/StreamingDotFeatures.cpp
| | | D	src/shogun/features/StreamingDotFeatures.h
| | | D	src/shogun/features/StreamingFeatures.cpp
| | | D	src/shogun/features/StreamingFeatures.h
| | | D	src/shogun/features/StreamingSparseFeatures.cpp
| | | D	src/shogun/features/StreamingSparseFeatures.h
| | | D	src/shogun/features/StreamingStringFeatures.cpp
| | | D	src/shogun/features/StreamingStringFeatures.h
| | | D	src/shogun/features/StreamingVwFeatures.cpp
| | | D	src/shogun/features/StreamingVwFeatures.h
| | | A	src/shogun/features/streaming/StreamingDenseFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingDenseFeatures.h
| | | A	src/shogun/features/streaming/StreamingDotFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingDotFeatures.h
| | | A	src/shogun/features/streaming/StreamingFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingFeatures.h
| | | A	src/shogun/features/streaming/StreamingSparseFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingSparseFeatures.h
| | | A	src/shogun/features/streaming/StreamingStringFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingStringFeatures.h
| | | A	src/shogun/features/streaming/StreamingVwFeatures.cpp
| | | A	src/shogun/features/streaming/StreamingVwFeatures.h
| | | D	src/shogun/io/InputParser.h
| | | D	src/shogun/io/ParseBuffer.h
| | | D	src/shogun/io/StreamingAsciiFile.cpp
| | | D	src/shogun/io/StreamingAsciiFile.h
| | | D	src/shogun/io/StreamingFile.cpp
| | | D	src/shogun/io/StreamingFile.h
| | | D	src/shogun/io/StreamingFileFromDenseFeatures.h
| | | D	src/shogun/io/StreamingFileFromFeatures.cpp
| | | D	src/shogun/io/StreamingFileFromFeatures.h
| | | D	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | D	src/shogun/io/StreamingFileFromStringFeatures.h
| | | D	src/shogun/io/StreamingVwCacheFile.cpp
| | | D	src/shogun/io/StreamingVwCacheFile.h
| | | D	src/shogun/io/StreamingVwFile.cpp
| | | D	src/shogun/io/StreamingVwFile.h
| | | A	src/shogun/io/streaming/InputParser.h
| | | A	src/shogun/io/streaming/ParseBuffer.h
| | | A	src/shogun/io/streaming/StreamingAsciiFile.cpp
| | | A	src/shogun/io/streaming/StreamingAsciiFile.h
| | | A	src/shogun/io/streaming/StreamingFile.cpp
| | | A	src/shogun/io/streaming/StreamingFile.h
| | | A	src/shogun/io/streaming/StreamingFileFromDenseFeatures.h
| | | A	src/shogun/io/streaming/StreamingFileFromFeatures.cpp
| | | A	src/shogun/io/streaming/StreamingFileFromFeatures.h
| | | A	src/shogun/io/streaming/StreamingFileFromSparseFeatures.h
| | | A	src/shogun/io/streaming/StreamingFileFromStringFeatures.h
| | | A	src/shogun/io/streaming/StreamingVwCacheFile.cpp
| | | A	src/shogun/io/streaming/StreamingVwCacheFile.h
| | | A	src/shogun/io/streaming/StreamingVwFile.cpp
| | | A	src/shogun/io/streaming/StreamingVwFile.h
| | | M	src/shogun/machine/OnlineLinearMachine.h
| | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | |      
* | |   commit d8663521c97a9a6d29266f18e6a8a2173c0e010a
|\ \ \  Merge: 3bda438 b1765dd
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 31 15:23:53 2012 -0700
| | | | 
| | | |     Merge pull request #682 from cwidmer/master
| | | |     
| | | |     fixed eigen3 detection problem
| | | |     
| * | | commit b1765dda76f5591a50d6e6b488fa32a79068e1b5
|/ / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | |   Date:   Tue Jul 31 03:47:49 2012 +0200
| | |   
| | |       fixed eigen3 detection for the case where includes are located in non-standard directory, e.g. ./configure --includes=/home/user/include/eigen3/
| | |   
| | |   M	src/configure
| | |    
* | | commit 3bda438dec58e023a1ed851e59ae21a15a2fb815
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 31 03:24:12 2012 +0400
| | | 
| | |     A bunch of fixes for multitask algoritmhs
| | | 
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | |    
* | | commit 7893db8c0ff3811519359cdaeafa0358ddb5f5de
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 31 01:01:14 2012 +0400
| | | 
| | |     Removed multitask subset support
| | | 
| | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | |      
* | |   commit b7623880879f93783c376b5e050f08a7f4351e87
|\ \ \  Merge: e532b28 da0380e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 09:35:09 2012 -0700
| | | | 
| | | |     Merge pull request #681 from karlnapf/master
| | | |     
| | | |     thresholds for linear time mmd
| | | |     
| * | | commit da0380e7f93e518e66dc7258b7d57de686b21b20
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 17:09:53 2012 +0100
| | | | 
| | | |     added threshold computation using inverse gaussian cdf
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | |     
| * | | commit f3492a11a1626f2146460531bb8b5e3b531f7dc3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 17:09:43 2012 +0100
| | | | 
| | | |     added inverse gaussian cdf plus tests
| | | | 
| | | | M	examples/undocumented/libshogun/statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |       
* | | |   commit e532b280ae7150174cd18a1359fb897eca0bc8b3
|\ \ \ \  Merge: 1cee68b ab98ca5
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jul 30 08:46:47 2012 -0700
| | | |   
| | | |       Merge pull request #680 from karlnapf/master
| | | |       
| | | |       finishing touches for tests
| | | |     
| * | | commit ab98ca5660b3ab66d17f8f549fe7e5a0122f4972
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 16:20:46 2012 +0100
| | | | 
| | | |     white-space change
| | | | 
| | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | | |     
| * | | commit 9b9b03dc1c20d846f46bfcd04381b9ec5c74ef77
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 16:20:38 2012 +0100
| | | | 
| | | |     added compute_threshold
| | | | 
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |     
| * | | commit ceebdeae4e24e515fbdaeb5431110c9e214a1f47
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 16:16:07 2012 +0100
| | | | 
| | | |     made p-value computation with gamma more modular
| | | | 
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit ffb4cd54cb9637d38d6f35a643e901ad788157f9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 16:15:53 2012 +0100
| | | | 
| | | |     doc updates
| | | | 
| | | | M	src/shogun/statistics/HSIC.h
| | | |     
| * | | commit 636d85b17a544b55f85dc361807f46257ecc75a1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 30 16:15:33 2012 +0100
| | | | 
| | | |     re-added assertion that should never fail
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit 97fd1af5227fbd0d0d7dd25385103adc102b8297
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Mon Jul 30 15:52:38 2012 +0100
| | |   
| | |       kernel matrices are now pre-computed: Features have to be stored in
| | |       memory anyway, and this is much faster
| | |   
| | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | |    
* | | commit 1cee68bd6d8263bb1c72c721aa15ba9674cd4d94
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 30 17:10:50 2012 +0400
| | | 
| | |     Multitask crossvalidation support
| | | 
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.h
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.h
| | |    
* | | commit 77433fe81d5e3f1944c0dd46c3b31b7d43aa4750
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 30 15:31:07 2012 +0400
| | | 
| | |     Removed one more wrong enum in lapack
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | |    
* | | commit da74d42311f33873467604bc8812dfd935745e22
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 30 15:14:20 2012 +0400
| | | 
| | |     Removed wrong enum keywords in lapack wrappers
| | | 
| | | M	src/shogun/mathematics/lapack.h
| | |    
* | | commit 2fd15a161921a57c0dccd6db2bf1188e0d2829cc
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 30 14:05:22 2012 +0400
| | | 
| | |     Updated MKL linking flags
| | | 
| | | M	src/configure
| | |    
* | | commit 787c44aeae7fb15e901fb42105fa1cf36a8e8ca0
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 28 23:51:16 2012 +0400
| | | 
| | |     Changed lapack guard in sgmatrix
| | | 
| | | M	src/shogun/lib/SGMatrix.cpp
| | |    
* | | commit 1a157fe80f8c5d0a444549e631332af7edefc10f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Jul 27 12:12:23 2012 +0400
| | | 
| | |     Gracefully fallback to loop based matrix multiply
| | | 
| | | M	src/shogun/lib/SGMatrix.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | |    
* | | commit bea8e08c02d3c06448a305060424881c4e6a26d6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Jul 27 04:21:32 2012 +0400
| | | 
| | |     Added subset support for multitask algorithms
| | | 
| | | M	src/shogun/features/Features.cpp
| | | M	src/shogun/features/Features.h
| | | M	src/shogun/features/Subset.h
| | | M	src/shogun/features/SubsetStack.h
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | |    
* | | commit 57d63710c295bb73ca83f1fe24ce5fcc0ea4484f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Jul 26 18:03:09 2012 +0400
| | | 
| | |     Added missed initialization of custom evaluations array
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/modelselection/ModelSelectionOutput.cpp
| | |    
* | | commit 09b53b5d97c3bfeee62b4cd15f2d323d1231af78
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Jul 26 02:23:44 2012 +0400
| | | 
| | |     Fixes for MALSAR JFL
| | | 
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | |    
* | | commit 086ee0ac33fc1f781198975ae4fb7da5ead2579e
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Jul 25 23:05:13 2012 +0400
| | | 
| | |     Added custom evaluations support for model selection output
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/modelselection/ModelSelectionOutput.cpp
| | | M	src/shogun/modelselection/ModelSelectionOutput.h
| | |      
* | |   commit 5b3d566964fdc02e64d57b22dc00f1dba44554bb
|\ \ \  Merge: 0f8b2a9 83f385e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 09:21:32 2012 -0700
| | | | 
| | | |     Merge pull request #678 from karlnapf/master
| | | |     
| | | |     more work towards threshold computations
| | | |     
| * | | commit 83f385eb1e1fdd98e31b3c23d0188b4ea21072e7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 17:19:58 2012 +0100
| | | | 
| | | |     minor checks and enabling threshold computations
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | |     
| * | | commit a32c81b1f3f3059b1d7c7e37734093792684dd87
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 17:19:42 2012 +0100
| | | | 
| | | |     added comments
| | | | 
| | | | M	src/shogun/statistics/HSIC.cpp
| | | |     
| * | | commit 6ef226bd04c6de45a81dd15432d862e1239e4eee
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 17:19:32 2012 +0100
| | | | 
| | | |     renamed inverse_normal_distribution to inverse_normal_cdf
| | | | 
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |       
* | | |   commit 0f8b2a9f2525ea509fd1c1a02796d59770cc68b0
|\ \ \ \  Merge: a88feed adc555a
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 25 08:56:20 2012 -0700
| | | |   
| | | |       Merge pull request #677 from karlnapf/master
| | | |       
| | | |       added inverse gamma cdf to statistics
| | | |     
| * | | commit adc555a7cad34794271532e5d1afa9c255b3984f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 16:53:17 2012 +0100
| | | | 
| | | |     added threshold computation in a better way
| | | |     added gamma fitting for threshold of HSIC
| | | | 
| | | | M	src/shogun/statistics/HSIC.cpp
| | | | M	src/shogun/statistics/HSIC.h
| | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | | | M	src/shogun/statistics/TwoDistributionsTestStatistic.h
| | | |     
| * | | commit 8f57540980793e85545a5cf03deb0e6ce30d17d3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 16:52:21 2012 +0100
| | | | 
| | | |     added test for inverse gamma cdf
| | | | 
| | | | M	examples/undocumented/libshogun/statistics.cpp
| | | |     
| * | | commit b427525f4bca0ac4d674cf3ad06abf0e26caba9a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 16:51:59 2012 +0100
| | | | 
| | | |     added inverse gamma cdf
| | | | 
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |       
* | | |   commit a88feed663f536c70eb443435579d99edf32e566
|\ \ \ \  Merge: f3b1c98 fa25275
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 25 08:08:39 2012 -0700
| | | |   
| | | |       Merge pull request #675 from karlnapf/master
| | | |       
| | | |       new HSIC example with gamma and bootstrapping
| | | |     
| * | | commit fa25275a89580f2d42d68e71d77e6a6d8ab248be
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 16:07:46 2012 +0100
| | | | 
| | | |     initial commit
| | | | 
| | | | A	examples/undocumented/python_modular/statistics_hsic.py
| | | |       
* | | |   commit f3b1c98207c2ea9bd4f8291f530fd12419995be9
|\ \ \ \  Merge: 8e7d14c fac0f66
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 25 08:00:46 2012 -0700
| | | |   
| | | |       Merge pull request #674 from karlnapf/master
| | | |       
| | | |       refactoring and bootstrapping for independence tests
| | | |     
| * | | commit fac0f661130f9db2ab13f812d51fb8e9e787fc75
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 25 15:58:32 2012 +0100
| | | | 
| | | |     comment changes
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |     
| * | | commit d8d11587042ad96ecce2ba75a013779678ce644d
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Wed Jul 25 15:58:22 2012 +0100
| | |   
| | |       changed class structure a bit to avoid redundancy and allowing easier
| | |       bootstrapping for independence tests
| | |   
| | |   M	src/interfaces/modular/Statistics.i
| | |   M	src/interfaces/modular/Statistics_includes.i
| | |   M	src/shogun/lib/SGVector.cpp
| | |   M	src/shogun/lib/SGVector.h
| | |   M	src/shogun/statistics/HSIC.cpp
| | |   M	src/shogun/statistics/HSIC.h
| | |   D	src/shogun/statistics/IndependenceTestStatistic.cpp
| | |   D	src/shogun/statistics/IndependenceTestStatistic.h
| | |   M	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | |   M	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | |   M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | |   M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | |   A	src/shogun/statistics/TwoDistributionsTestStatistic.cpp
| | |   A	src/shogun/statistics/TwoDistributionsTestStatistic.h
| | |   D	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | |   D	src/shogun/statistics/TwoSampleTestStatistic.h
| | |    
* | | commit 8e7d14c92c4be9e6eea5170847861e8acf539b97
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Jul 25 02:40:43 2012 +0400
| | | 
| | |     Added support of other than linear machines in modelselectionoutput
| | | 
| | | M	src/shogun/modelselection/ModelSelectionOutput.cpp
| | |    
* | | commit 629ccb8151ca2e0e97a5e4f08535a5073ff278ca
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Jul 25 00:48:30 2012 +0400
| | | 
| | |     Get eigen3 out of math.h
| | | 
| | | M	src/shogun/lib/SGVector.cpp
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/mathematics/Math.h
| | | A	src/shogun/mathematics/eigen3.h
| | |    
* | | commit 50f8b64d79874f9261cfd0297c7d349287268c28
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 24 23:02:21 2012 +0400
| | | 
| | |     Made LLE thread-safe
| | | 
| | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | |      
* | |   commit 9458ec7a5739af32735d8ff93631b77eb953aca9
|\ \ \  Merge: 497cd01 d0a0875
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 24 10:26:08 2012 -0700
| | | | 
| | | |     Merge pull request #673 from gsomix/buffer_protocol
| | | |     
| | | |     Fixed example for old version numpy
| | | |     
| * | | commit d0a0875861200b71fc5ad0a897931b32f1f99193
|/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | |   Date:   Tue Jul 24 21:20:41 2012 +0400
| | |   
| | |       fixed example for old version numpy
| | |   
| | |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | |      
* | |   commit 497cd010ae7aea513374e4d972bd3168756e5a7d
|\ \ \  Merge: df82997d a3cbd47
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 24 09:56:16 2012 -0700
| | | | 
| | | |     Merge pull request #672 from karlnapf/master
| | | |     
| | | |     new data generation method and helper methods
| | | |     
| * | | commit a3cbd47d4d22612af99ddb6572db7cb3c98a1d96
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 24 17:45:59 2012 +0100
| | | | 
| | | |     make data generator use new matrix allocation method
| | | |     added generate_sym_mix_gauss to data generator
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | M	src/shogun/features/DataGenerator.cpp
| | | | M	src/shogun/features/DataGenerator.h
| | | |     
| * | | commit c9084693fe35f99d0d883e888dc1ea36c866024f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 24 17:45:27 2012 +0100
| | |   
| | |       added new helper method to get an allocated matrix
| | |   
| | |   M	src/shogun/lib/SGMatrix.cpp
| | |   M	src/shogun/lib/SGMatrix.h
| | |      
* | |   commit df82997d171fa33d036a055e8487c97fbe63d1bc
|\ \ \  Merge: e37e6fe 8879634
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 24 09:45:27 2012 -0700
| | | | 
| | | |     Merge pull request #671 from gsomix/buffer_protocol
| | | |     
| | | |     Fixed compilation error in ruby_modular
| | | |     
| * | | commit 8879634548bbbff0864eb406b274e38f4a50408b
|/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | |   Date:   Tue Jul 24 16:39:38 2012 +0400
| | |   
| | |       fixed compilation error
| | |   
| | |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | |   M	src/interfaces/modular/Features.i
| | |   M	src/interfaces/python_modular/python_protocols.i
| | |      
* | |   commit e37e6fecb7dac0298ab6d97664c08df99f24be50
|\ \ \  Merge: ee6b9c2 ef423ad
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 24 04:26:58 2012 -0700
| | | | 
| | | |     Merge pull request #670 from vigsterkr/master
| | | |     
| | | |     Use the supplied pkg-config script to detect eigen
| | | |     
| * | | commit ef423ad571d0fa6dc9d1b160d4f48816de6a5773
|/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | |   Date:   Tue Jul 24 11:20:57 2012 +0000
| | |   
| | |       Use the supplied pkg-config script to detect eigen3
| | |       Use pkg-config to detect eigen3, as it supplies pkg-config script
| | |       and include eigen headers as they are ment to be included
| | |       (see documentation of eigen).
| | |   
| | |   M	src/configure
| | |   M	src/shogun/mathematics/Math.h
| | |    
* | | commit ee6b9c2c024b0485512a03e5a3840bc6712df8c4
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 24 02:22:08 2012 +0400
| | | 
| | |     A few fixes for malsar clustered multitask solver
| | | 
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | |      
* | |   commit b2eabfc889d14de147163efb6de69da2bb929237
|\ \ \  Merge: f606639 05d66a2
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 23 14:34:06 2012 -0700
| | | | 
| | | |     Merge pull request #666 from gsomix/buffer_protocol
| | | |     
| | | |     Python Buffer Protocol support for DenseFeatures
| | | |     
| * | | commit 05d66a24f51f88e321cf61203bafca7289d9e142
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Tue Jul 24 00:28:45 2012 +0400
| | | | 
| | | |     big example DenseFeatures' protocols
| | | | 
| | | | M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | | M	src/interfaces/python_modular/python_protocols.i
| | | |     
| * | | commit 34fe1cb4a9cbc8208e940be9e5ee4278b5fb8312
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Jul 23 17:09:26 2012 +0400
| | | | 
| | | |     added setters for DenseFeatures; fixed codestyle and many bugs
| | | | 
| | | | M	src/interfaces/modular/Features.i
| | | | A	src/interfaces/python_modular/python_protocols.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
| * | | commit 61eac334fbb9013737ede9931b19a25bf1ee5f5a
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sat Jul 21 03:08:52 2012 +0400
| | | | 
| | | |     slicing getter for DenseFeatures
| | | | 
| | | | M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | | M	src/interfaces/modular/Features.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
| * | | commit 1855ae7d0697afabc1c6c1191b22894cf2edcc35
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sat Jul 21 01:18:44 2012 +0400
| | | | 
| | | |     preliminary design of slicing like in numpy
| | | | 
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
| * | | commit d3dd73e121f6ca109f4213eb8cfd61be13ce85d2
|/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | |   Date:   Thu Jul 19 21:55:47 2012 +0400
| | |   
| | |       added simple slicing and [] operator for DenseFeatures
| | |   
| | |   M	src/interfaces/modular/Features.i
| | |   M	src/interfaces/python_modular/swig_typemaps.i
| | |    
* | | commit f6066391f3b5d800d4a0e16a161d61bf5f88102c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 23 22:24:12 2012 +0200
| | | 
| | |     add doc/tutorial as submodule
| | | 
| | | M	.gitmodules
| | | A	doc/tutorial
| | |    
* | | commit 35d423d51a1bd8bada3198826d479ca6af553a4c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 23 22:16:00 2012 +0200
| | | 
| | |     update git ignore to ignore only certain files/dirs in shogun/doc
| | | 
| | | M	.gitignore
| | |      
* | |   commit 62c71cf191f416972c1a928b4fcb45a2e051109e
|\ \ \  Merge: 28824e9 5c16e8c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 23 08:10:51 2012 -0700
| | | | 
| | | |     Merge pull request #669 from karlnapf/master
| | | |     
| | | |     Make examples use data generator class
| | | |     
| * | | commit 5c16e8c7ebad2d3dca5bb7369358e0134947c039
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 23 16:08:27 2012 +0100
| | | | 
| | | |     typo
| | | | 
| | | | M	src/shogun/features/DataGenerator.h
| | | |     
| * | | commit 3f6906d0d0207065ab6a0001c2a0235713a5da6d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jul 23 16:08:23 2012 +0100
| | | | 
| | | |     made all python examples use data generator class
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | | M	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| | | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | | D	examples/undocumented/python_modular/tools/two_distributions_data.py
| | | |     
| * | | commit 1cbdee86f395001da2a304736440ddb80f26ec70
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Mon Jul 23 15:50:23 2012 +0100
| | |   
| | |       make use of new data generator class
| | |   
| | |   M	examples/undocumented/libshogun/statistics_hsic.cpp
| | |   M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | |   M	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
| | |    
* | | commit 28824e915663c5c343b0c453b882d601a07b3e31
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 23 06:16:49 2012 +0400
| | | 
| | |     Added fused lasso capabilities to the SLEP solver
| | | 
| | | A	src/shogun/lib/slep/flsa/flsa.cpp
| | | M	src/shogun/lib/slep/flsa/flsa.h
| | | A	src/shogun/lib/slep/flsa/sfa.cpp
| | | M	src/shogun/lib/slep/flsa/sfa.h
| | | M	src/shogun/lib/slep/slep_options.h
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | | M	src/shogun/machine/SLEPMachine.cpp
| | |    
* | | commit 8446c45815e5535424a264f41b2760cb30c200a8
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:38:25 2012 +0400
| | | 
| | |     Fixed a few undocumented warnings
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.h
| | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | M	src/shogun/transfer/multitask/TaskGroup.h
| | |    
* | | commit 80530a6295b6c0f0d25cf6f64e915b1efafb62e6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:35:48 2012 +0400
| | | 
| | |     Fixed doc of feature blocked logistic regression
| | | 
| | | M	src/shogun/classifier/FeatureBlockLogisticRegression.h
| | |    
* | | commit b5c0c628cb6213494a9d5ea9ab43101b2a76a855
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:34:25 2012 +0400
| | | 
| | |     Fixed sparse covariance estimation doc
| | | 
| | | M	src/shogun/mathematics/SparseInverseCovariance.h
| | |    
* | | commit b99b67127d31629710f9b17300a62c824a26160c
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:33:54 2012 +0400
| | | 
| | |     Removed explicit links in lbfgs
| | | 
| | | M	src/shogun/optimization/lbfgs/lbfgs.h
| | |    
* | | commit 82a598b0fc3c6b12404076fd64b6cae7e62f32af
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:31:09 2012 +0400
| | | 
| | |     Removed unused variable from CTask
| | | 
| | | M	src/shogun/transfer/multitask/Task.cpp
| | |    
* | | commit 0c3cb28f36b7f929b826f6bcc1336b4783d18acd
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 22:30:39 2012 +0400
| | | 
| | |     Renamed conflicting matrix name in compute_few_eigenvectors
| | | 
| | | M	src/shogun/lib/SGMatrix.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | |      
* | |   commit 8e101b766f7e4ed29e98b4a0c3d4a7f2c7b289cc
|\ \ \  Merge: 9bef2a5 1b70388
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 22 11:01:23 2012 -0700
| | | | 
| | | |     Merge pull request #668 from karlnapf/master
| | | |     
| | | |     new data generator class to generate example data
| | | |     
| * | | commit 1b7038863b44f0e08f7d1edeed5ee95b66ccc0be
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 22 18:59:32 2012 +0100
| | | | 
| | | |     make use of new data generator
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit 3d23819529f78cbe728e6b4833ce2bccec4e459c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 22 18:59:22 2012 +0100
| | | | 
| | | |     better way of generating mean samples
| | | | 
| | | | M	src/shogun/features/DataGenerator.cpp
| | | | M	src/shogun/features/DataGenerator.h
| | | |     
| * | | commit f1232bc3f852e4596df225463c13fdcd9c350b12
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 22 18:11:54 2012 +0100
| | | | 
| | | |     first working method
| | | | 
| | | | M	src/shogun/features/DataGenerator.cpp
| | | | M	src/shogun/features/DataGenerator.h
| | | |     
| * | | commit 9f65805b694721abc268ddce5721c45986c0f28f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Sun Jul 22 18:11:42 2012 +0100
| | |   
| | |       aded DataGenerator class
| | |   
| | |   M	src/interfaces/modular/Features.i
| | |   M	src/interfaces/modular/Features_includes.i
| | |   A	src/shogun/features/DataGenerator.cpp
| | |   A	src/shogun/features/DataGenerator.h
| | |    
* | | commit 9bef2a5f50dfa95b1bc6907d3510141370221776
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 21:43:03 2012 +0400
| | | 
| | |     Added python examples for new classes
| | | 
| | | A	examples/undocumented/python_modular/classifier_multiclassmultipleoutputliblinear_modular.py
| | | A	examples/undocumented/python_modular/modelselection_random_search_liblinear_modular.py
| | | A	examples/undocumented/python_modular/transfer_multitask_clustered_logistic_regression.py
| | |    
* | | commit aaa603dffd9341a5f2cf3a25fea7911db3ebb4f9
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 21:41:11 2012 +0400
| | | 
| | |     A few fixes for malsar based algorithms
| | | 
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | |    
* | | commit 3d873b41cb6daf4575b1a7f323bdc22d51dadbf4
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 21:38:37 2012 +0400
| | | 
| | |     Made JLCoverTree parameters static
| | | 
| | | M	src/shogun/lib/JLCoverTree.h
| | |    
* | | commit f4b38522d1c992f8db56d1f301260bc7ecff1e4a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 18:20:32 2012 +0400
| | | 
| | |     Added compute few eigenvectors routine
| | | 
| | | M	src/shogun/lib/SGMatrix.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | |      
* | |   commit 532a5dd062195fcb763979a61437e6fbe5c487b2
|\ \ \  Merge: 0e9c608 924dc20
| |_|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| |   Date:   Sat Jul 21 17:13:54 2012 -0700
| | |   
| | |       Merge pull request #659 from vigsterkr/latent
| | |       
| | |       Switch from function ptrs to CLatentModel Since handling function pointers in SWIG is quite complex switching to CLatentModel for implementing PSI and infer latent variable functions
| | |    
| * | commit 924dc20dc98e1694c5c9f5abb0b28f5fe6098729
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Jul 22 00:03:39 2012 +0000
| | | 
| | |     Fix spacing when casting
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | |    
| * | commit 5b8915d1fc18a56e6d9aea75ae756831f93e3e55
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Wed Jul 18 13:16:39 2012 +0000
| | | 
| | |     Switch from function ptrs to CLatentModel
| | |     Since handling function pointers in SWIG is quite complex
| | |     switching to CLatentModel for implementing PSI and infer latent
| | |     variable functions
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | A	src/shogun/latent/LatentModel.cpp
| | | A	src/shogun/latent/LatentModel.h
| | |    
* | | commit 0e9c608d54fdbbff2e3b697ff92bfd136a02e9c3
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 02:56:42 2012 +0400
| | | 
| | |     Introduced multiple output multiclass labels
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/Features_includes.i
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/shogun/labels/LabelTypes.h
| | | A	src/shogun/labels/MulticlassMultipleOutputLabels.cpp
| | | A	src/shogun/labels/MulticlassMultipleOutputLabels.h
| | | M	src/shogun/machine/MulticlassMachine.cpp
| | | M	src/shogun/machine/MulticlassMachine.h
| | | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| | | M	src/shogun/multiclass/MulticlassStrategy.h
| | |    
* | | commit 7a0f065a3bce425a2ace75697a3f61492d0caad9
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 00:58:52 2012 +0400
| | | 
| | |     Fixes for feature blocked logistic regression
| | | 
| | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | |    
* | | commit 2b6dcd3a77ddc3a5608d67165d421596732f3ef0
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 22 00:02:42 2012 +0400
| | | 
| | |     Changed task indexing way of MALSAR based algorithms and task api in general
| | | 
| | | M	src/shogun/lib/malsar/malsar_clustered.cpp
| | | M	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/malsar/malsar_low_rank.cpp
| | | M	src/shogun/lib/malsar/malsar_options.h
| | | M	src/shogun/lib/slep/slep_solver.cpp
| | | M	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/Task.cpp
| | | M	src/shogun/transfer/multitask/Task.h
| | | M	src/shogun/transfer/multitask/TaskGroup.cpp
| | | M	src/shogun/transfer/multitask/TaskGroup.h
| | | M	src/shogun/transfer/multitask/TaskTree.cpp
| | |    
* | | commit 6eea837285f105da569783239a0fd4f40f9fe582
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 21 20:46:26 2012 +0400
| | | 
| | |     Introduced random search model selection
| | | 
| | | M	src/interfaces/modular/ModelSelection.i
| | | M	src/interfaces/modular/ModelSelection_includes.i
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | | A	src/shogun/modelselection/RandomSearchModelSelection.cpp
| | | A	src/shogun/modelselection/RandomSearchModelSelection.h
| | |    
* | | commit 6765c4dbd2dce1dd5a5642b3a6f80c853572806d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 20 21:44:00 2012 +0200
| | | 
| | |     filter make line
| | | 
| | | M	examples/undocumented/libshogun/check.sh
| | |      
* | |   commit 7bafebab0ee40c820e358155305cffbc25d599d0
|\ \ \  Merge: d69d803 69d7578
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 20 11:33:58 2012 -0700
| | | | 
| | | |     Merge pull request #665 from vigsterkr/fbsd
| | | |     
| | | |     LD_LIBRARY_PATH is overwritten in check-examples
| | | |     
| * | | commit 69d75788053481ef51419c6e51ae8d0fddaf350b
|/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | |   Date:   Fri Jul 20 13:32:03 2012 +0000
| | |   
| | |       LD_LIBRARY_PATH is overwritten in check-examples
| | |       If u have an LD_LIBRARY_PATH set in the shell when you
| | |       try to run 'make check-examples-libshogun' the LD_LIBRARY_PATH
| | |       will be overwritten by the location of the libshogun.so instead
| | |       of just prepending that path to the already set LD_LIBRARY_PATHs
| | |   
| | |   M	src/Makefile.template
| | |      
* | |   commit d69d8033d7ce1cbb39590bc0b1bcfc61b03350eb
|\ \ \  Merge: 8484f8f e8a368e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 05:24:51 2012 -0700
| | | | 
| | | |     Merge pull request #664 from karlnapf/master
| | | |     
| | | |     added example for mkl multi class cross-validation
| | | |     
| * | | commit e8a368e591e96faf9ad1db7b379b3b433c9bfcf5
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 13:24:22 2012 +0100
| | | | 
| | | |     added assertion for result quality
| | | | 
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass_mkl.cpp
| | | |     
| * | | commit e2f0d1293eb8945414f5858cc852945db27b5b18
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 13:21:04 2012 +0100
| | | | 
| | | |     added mkl multiclass cross-validation example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/evaluation_cross_validation_multiclass_mkl.cpp
| | | |       
* | | |   commit 8484f8f6b6b63ce1dccf4b2d5194801a5af17298
|\ \ \ \  Merge: d80d9d3 fab1560
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 20 04:58:56 2012 -0700
| | | |   
| | | |       Merge pull request #663 from karlnapf/master
| | | |       
| | | |       SG_REF based memory leak fixes
| | | |     
| * | | commit fab15600c83dba4089c25e834a437ecf54e0fb2a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:56:39 2012 +0100
| | | | 
| | | |     memory leak fixes
| | | | 
| | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |       
* | | |   commit d80d9d38b2185bd85a222905f91518bd2bf44f2c
|\ \ \ \  Merge: 823ef52 443bb05
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 20 04:26:44 2012 -0700
| | | |   
| | | |       Merge pull request #662 from karlnapf/master
| | | |       
| | | |       fix for segfault
| | | |     
| * | | commit 443bb057e0ffce0f4c78ae7c88cc14863f847d66
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:26:11 2012 +0100
| | | | 
| | | |     fixed segfault when data=NULL
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |       
* | | |   commit 823ef52a8e0f04f4947809010977472ba2609c21
|\ \ \ \  Merge: d5d5151 cea8bcd
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 20 04:18:35 2012 -0700
| | | |   
| | | |       Merge pull request #661 from karlnapf/master
| | | |       
| | | |       fixes to make MKL working with X-validation
| | | |     
| * | | commit cea8bcdbf92ab47b26d0848057e9722485b8b2f1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:05:39 2012 +0100
| | | | 
| | | |     debug messages and subset index bugfix
| | | | 
| | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | |     
| * | | commit 27fe4e2e3175258e63deff8aed6a96baf6820ba8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:05:23 2012 +0100
| | | | 
| | | |     fixed memory leak and intendation
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | |     
| * | | commit f9302980785155772dae6088d2fe2e6059b07737
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:02:09 2012 +0100
| | | | 
| | | |     -debug messages and a bugfix where the number of vectors is wrongly returned; more of a workaround
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |     
| * | | commit 5c71349174ec304dcd2b7a3b1e0712c3e1b56a4c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 12:00:07 2012 +0100
| | | | 
| | | |     moved assertion before index conversion
| | | | 
| | | | M	src/shogun/labels/Labels.cpp
| | | |     
| * | | commit 21c348b5d48a1ed762ca57088ca9d18819fa83b4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 20 11:59:48 2012 +0100
| | | | 
| | | |     debug messages
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/machine/Machine.cpp
| | | |     
* | | | commit d5d5151629cb1a6efef5de749df93e30978510d3
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Fri Jul 20 14:22:45 2012 +0400
| | | | 
| | | |     Improved libqp GSMO solver
| | | |     
| | | |     Reformatted spaces to tabs
| | | |     Added checks of initial guess
| | | | 
| | | | M	src/shogun/lib/external/libqp_gsmo.cpp
| | | |     
* | | | commit 24429260627a5286406c72a538a5e14d151a0b85
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 19 23:15:27 2012 +0200
| | | | 
| | | |     escape flags
| | | | 
| | | | M	examples/undocumented/libshogun/check.sh
| | | |     
* | | | commit fa6ce12e94e30928305d7cc0d6eae938e238aa94
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 19 22:38:09 2012 +0200
| | | | 
| | | |     pass COMP_CPP through for compiling libshogun examples
| | | | 
| | | | M	examples/undocumented/libshogun/check.sh
| | | | M	src/Makefile.template
| | | |     
* | | | commit 96a80ed215d2b7d3cb1b080ce73be026b8012160
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 19 22:03:25 2012 +0200
| | |   
| | |       use test -z not -n to use configured make
| | |   
| | |   M	examples/undocumented/libshogun/check.sh
| | |    
* | | commit 759fdb7c4fb85cc7e5fd810abfd07db337203177
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/|   Date:   Thu Jul 19 15:17:33 2012 +0400
| |   
| |       Refactored MALSAR-based multitask algorithms and added clustered multitask logistic regression
| |   
| |   M	src/interfaces/modular/Transfer.i
| |   M	src/interfaces/modular/Transfer_includes.i
| |   A	src/shogun/lib/malsar/malsar_clustered.cpp
| |   A	src/shogun/lib/malsar/malsar_clustered.h
| |   A	src/shogun/lib/malsar/malsar_joint_feature_learning.cpp
| |   A	src/shogun/lib/malsar/malsar_joint_feature_learning.h
| |   A	src/shogun/lib/malsar/malsar_low_rank.cpp
| |   A	src/shogun/lib/malsar/malsar_low_rank.h
| |   A	src/shogun/lib/malsar/malsar_options.h
| |   D	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| |   D	src/shogun/lib/slep/malsar_joint_feature_learning.h
| |   D	src/shogun/lib/slep/malsar_low_rank.cpp
| |   D	src/shogun/lib/slep/malsar_low_rank.h
| |   A	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.cpp
| |   A	src/shogun/transfer/multitask/MultitaskClusteredLogisticRegression.h
| |   M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| |   M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| |   
* | commit 20c8bce376817b3cd8b335e6da77e66fec7c525a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Jul 18 23:29:19 2012 +0400
| | 
| |     Removed duplicated transfer learning examples targeting
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
* | commit 53d384ecd8b425fed7f48584da474f2a2ca9bbf9
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Jul 18 23:18:20 2012 +0400
| | 
| |     Refactoring of multitask submodule
| | 
| | M	examples/undocumented/libshogun/transfer_multitasklogisticregression.cpp
| | M	examples/undocumented/libshogun/transfer_multitasklsregression.cpp
| | M	examples/undocumented/python_modular/transfer_multitask_l1l2_logistic_regression.py
| | M	examples/undocumented/python_modular/transfer_multitask_leastsquares_regression.py
| | M	examples/undocumented/python_modular/transfer_multitask_logistic_regression.py
| | M	examples/undocumented/python_modular/transfer_multitask_trace_logistic_regression.py
| | M	src/interfaces/modular/Transfer.i
| | M	src/interfaces/modular/Transfer_includes.i
| | M	src/shogun/lib/IndexBlockTree.cpp
| | M	src/shogun/lib/IndexBlockTree.h
| | M	src/shogun/lib/slep/slep_solver.cpp
| | M	src/shogun/lib/slep/tree/altra.cpp
| | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskLSRegression.h
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.h
| | M	src/shogun/transfer/multitask/Task.cpp
| | M	src/shogun/transfer/multitask/Task.h
| | A	src/shogun/transfer/multitask/TaskGroup.cpp
| | A	src/shogun/transfer/multitask/TaskGroup.h
| | A	src/shogun/transfer/multitask/TaskRelation.h
| | M	src/shogun/transfer/multitask/TaskTree.cpp
| | M	src/shogun/transfer/multitask/TaskTree.h
| |     
* |   commit 01d62924622a581196e33c29841ca32461963f61
|\ \  Merge: 46b4d2c 4f86bd8
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Wed Jul 18 10:59:21 2012 -0700
| |   
| |       Merge pull request #658 from karlnapf/master
| |       
| |       cross-validation for combined features aka MKL
| |   
| * commit 4f86bd80dda3cea1d2305d8c1fce6aa50e24d27f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:57:37 2012 +0100
| | 
| |     restored a wrongly deleted line
| | 
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/multiclass/GMNPSVM.cpp
| |   
| * commit 7524f515ad819035a68dcebae3893d27ffe31e22
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:53:15 2012 +0100
| | 
| |     -added copy_subset and general subset support
| |     -this allows x-validation for combined features now
| | 
| | M	src/shogun/features/CombinedFeatures.cpp
| | M	src/shogun/features/CombinedFeatures.h
| |   
| * commit 5f02b2c265ae0adc7b367659bb64dfa0af4139a0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:52:48 2012 +0100
| | 
| |     improved error message
| | 
| | M	src/shogun/features/Features.cpp
| |   
| * commit 205c31df5e77ee9bcb3a9cac4a7393989fb7cf06
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:52:37 2012 +0100
| | 
| |     added SG_REF
| | 
| | M	src/shogun/features/DenseFeatures.cpp
| | M	src/shogun/features/SparseFeatures.cpp
| | M	src/shogun/features/StringFeatures.cpp
| |   
| * commit 8d1af609e9f0337ed9dfd9aa57bb87387ce884e9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:52:17 2012 +0100
| | 
| |     improved error messages
| | 
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit 201f8aa8efd0898601507084721cc04a3b5247b3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 18:52:04 2012 +0100
| | 
| |     added new object instruction
| | 
| | M	src/interfaces/modular/Features.i
| |   
| * commit c77c115bb1204493ffd66ca6ba3111016aba458b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 17:53:56 2012 +0100
| | 
| |     improved error message
| | 
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/multiclass/GMNPSVM.cpp
| |   
* | commit 46b4d2ce15c431cfa26f44fc7152e3fa1adcbc8e
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Wed Jul 18 14:31:26 2012 +0400
|   
|       Updated one more include
|   
|   M	examples/undocumented/libshogun/transfer_multitasklogisticregression.cpp
|   M	src/shogun/lib/slep/slep_solver.cpp
|  
* commit 5712c9afc96731057918b3e53085ee3d5b623612
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Wed Jul 18 13:49:52 2012 +0400
| 
|     Fixed includes in logistic regression classes
| 
| M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| M	src/shogun/classifier/L1LogisticRegression.cpp
|    
*   commit 1e888a0774c4b62add46b15d9c8630cee0603de1
|\  Merge: 7565032 bcb7e43
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 18 02:46:43 2012 -0700
| | 
| |     Merge pull request #649 from puffin444/master
| |     
| |     ARD and Gradient Search Vector Learning
| |     
| *   commit bcb7e43204e8c15f61040fcd59a8db8a3b445223
| |\  Merge: bd618ec c6470fb
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Tue Jul 17 16:18:17 2012 +0000
| | | 
| | |     Merge branch 'master' of https://github.com/puffin444/shogun
| | |     
| | |     Conflicts:
| | |     	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | |     	src/shogun/evaluation/GradientResult.h
| | |     	src/shogun/kernel/GaussianARDKernel.cpp
| | |     	src/shogun/kernel/GaussianARDKernel.h
| | |     	src/shogun/kernel/LinearARDKernel.cpp
| | |     	src/shogun/kernel/LinearARDKernel.h
| | |     	src/shogun/modelselection/GradientModelSelection.cpp
| | |      
| | *   commit c6470fb89fd18eafb1f37c3615052f21464ac0c1
| | |\  Merge: 144912a 9782e32
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Mon Jul 16 01:09:25 2012 +0000
| | | | 
| | | |     Merge branch 'master' of https://github.com/puffin444/shogun
| | | |     
| | | |     Conflicts:
| | | |     	src/shogun/evaluation/GradientResult.h
| | | |     	src/shogun/kernel/GaussianARDKernel.cpp
| | | |     	src/shogun/kernel/LinearARDKernel.cpp
| | | |     	src/shogun/kernel/LinearARDKernel.h
| | | |     	src/shogun/modelselection/GradientModelSelection.cpp
| | | |     	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | |     	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| | | * commit 9782e32019914db7abc53c95527fd16282b9195f
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sat Jul 14 16:48:26 2012 +0000
| | | | 
| | | |     Implemented ARD learning.
| | | | 
| | | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |     
| | * | commit 144912ae91d00edaaa5e997381a0069061b4d80f
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Mon Jul 16 00:57:28 2012 +0000
| | | | 
| | | |     ARD Learning added. Gradient search now supports vectors and SGVectors
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |     
| | * | commit 9fbd80358e11ae76c2dcae14dc9ab98c2b5ce6e4
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sat Jul 14 16:48:26 2012 +0000
| | | | 
| | | |     Implemented ARD learning.
| | | | 
| | | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |     
| * | | commit bd618ec087cbcd220f1e94fe7d76a063eb4793cf
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jul 17 15:57:37 2012 +0000
| | | | 
| | | |     Cleaned some stuff up.
| | | | 
| | | | M	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | | | M	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| | | | M	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| | | | M	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | |     
| * | | commit 7efc1bac3a3d65befbee771759549e84963d27d7
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Mon Jul 16 00:57:28 2012 +0000
| | | | 
| | | |     ARD Learning added. Gradient search now supports vectors and SGVectors
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/regression_gaussian_process_ard.cpp
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |     
| * | | commit 1d15c97b8940d0e0eb2d79e1ec08fe8af2e071d3
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sat Jul 14 16:48:26 2012 +0000
| | | | 
| | | |     Implemented ARD learning.
| | | | 
| | | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | | M	src/shogun/evaluation/GradientResult.h
| | | | M	src/shogun/kernel/GaussianARDKernel.cpp
| | | | M	src/shogun/kernel/GaussianARDKernel.h
| | | | M	src/shogun/kernel/LinearARDKernel.cpp
| | | | M	src/shogun/kernel/LinearARDKernel.h
| | | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | |     
* | | | commit 7565032a1065341b3f6c5e71c5105e68daee84e8
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 18 05:11:44 2012 +0400
| | | | 
| | | |     Merged all SLEP solvers into one
| | | | 
| | | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | | M	src/shogun/classifier/L1LogisticRegression.cpp
| | | | D	src/shogun/lib/slep/slep_accel_grad_mtl.cpp
| | | | D	src/shogun/lib/slep/slep_accel_grad_mtl.h
| | | | D	src/shogun/lib/slep/slep_logistic.cpp
| | | | D	src/shogun/lib/slep/slep_logistic.h
| | | | D	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | D	src/shogun/lib/slep/slep_mt_lsr.h
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | A	src/shogun/lib/slep/slep_solver.cpp
| | | | A	src/shogun/lib/slep/slep_solver.h
| | | | D	src/shogun/lib/slep/slep_tree_mt_lr.h
| | | | D	src/shogun/lib/slep/slep_tree_mt_lsr.h
| | | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | | D	src/shogun/transfer/multitask/TraceNormMultitaskLSRegression.cpp
| | | | D	src/shogun/transfer/multitask/TraceNormMultitaskLSRegression.h
| | | |     
* | | | commit 53e4cff6fff0dd0be93b167c0578b619bec988b5
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 18 02:24:32 2012 +0400
| | | | 
| | | |     Introduced L1 logistic regression
| | | | 
| | | | M	src/interfaces/modular/Classifier.i
| | | | M	src/interfaces/modular/Classifier_includes.i
| | | | A	src/shogun/classifier/L1LogisticRegression.cpp
| | | | A	src/shogun/classifier/L1LogisticRegression.h
| | | | M	src/shogun/lib/slep/slep_logistic.cpp
| | | | M	src/shogun/lib/slep/slep_options.h
| | | |     
* | | | commit f2bcaa9f613ac65938c153e1c477a5d689df07f7
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 18 01:40:32 2012 +0400
| | | | 
| | | |     Removed extra left paren
| | | | 
| | | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | |     
* | | | commit 077106704221eca1c80d9d62332776f01cb7b275
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 18 01:34:22 2012 +0400
| | | | 
| | | |     Fixes for eigen3 based multitask logistic regression classes
| | | | 
| | | | M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | |     
* | | | commit 154176c8dd5b28f7dca4a18e870b2521639af6fe
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 18 01:25:25 2012 +0400
| | | | 
| | | |     Made multitask eigen3 based algorithms safe
| | | | 
| | | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | | |     
* | | | commit 6f31244afd5663cef5ebece18d996893a35abea6
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 17 23:56:32 2012 +0400
| | | | 
| | | |     Removed unnecessary debug print
| | | | 
| | | | M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | | |     
* | | | commit 197ebdf427b449c742f226a1a3cd640e606ced8a
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 17 23:56:01 2012 +0400
| | | | 
| | | |     Added multitask python examples
| | | | 
| | | | D	examples/undocumented/python_modular/transfer_multitask_group_regression.py
| | | | A	examples/undocumented/python_modular/transfer_multitask_l1l2_logistic_regression.py
| | | | A	examples/undocumented/python_modular/transfer_multitask_leastsquares_regression.py
| | | | A	examples/undocumented/python_modular/transfer_multitask_logistic_regression.py
| | | | A	examples/undocumented/python_modular/transfer_multitask_trace_logistic_regression.py
| | | |     
* | | | commit dfb929e0730f690da65c57ebb21768060c278765
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 17 23:49:39 2012 +0400
| | | | 
| | | |     Eigen3 usage for dot in sgvector
| | | | 
| | | | M	src/shogun/lib/SGVector.cpp
| | | |       
* | | |   commit 48873ae63d0b431316c1856f7ec08c002d449c07
|\ \ \ \  Merge: 2e7e626 d7076c3
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Tue Jul 17 12:23:10 2012 -0700
| | | | | 
| | | | |     Merge pull request #652 from koenvandesande/master
| | | | |     
| | | | |     Use CBLAS optimized vector multiplication inside SGVector::vec1_plus_scalar_times_vec2
| | | | |      
| * | | | commit d7076c3b13dbb908ed0fa6a8d00d76e4bb4e9b3e
| | | | | Author: Koen van de Sande <koen@tibed.net>
| | | | | Date:   Tue Jul 17 00:34:38 2012 +0200
| | | | | 
| | | | |     Use cblas in SGVector::vec1_plus_scalar_times_vec2
| | | | |     
| | | | |     The function SGVector::vec1_plus_scalar_times_vec2 maps nicely onto
| | | | |     cblas_saxpy and cblas_daxpy, which are significantly faster. Had to
| | | | |     disable generic template for vec1_plus_scalar_times_vec2, but it is not
| | | | |     used anyway.
| | | | | 
| | | | | M	src/shogun/lib/SGVector.cpp
| | | | | M	src/shogun/lib/SGVector.h
| | | | |        
* | | | |   commit 2e7e626f1646c0cf27a0062ca6bf8929b6dcaf3a
|\ \ \ \ \  Merge: 989a7f7 15b5263
| | | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | | Date:   Tue Jul 17 12:15:12 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #657 from gsomix/buffer_protocol
| | | | | |     
| | | | | |     Minor fix for buffer protocol example
| | | | | |       
| * | | | | commit 15b52633ab5fc08981be4b5df17ddf1099021956
|/ / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | |   Date:   Tue Jul 17 23:12:43 2012 +0400
| | | | |   
| | | | |       minor fix
| | | | |   
| | | | |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | | |      
* | | | | commit 989a7f7c8c088cec5f8c9f5296d54a508119e0a0
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Tue Jul 17 23:12:29 2012 +0400
| | | | | 
| | | | |     Added larank libshogun example with multiple training call
| | | | | 
| | | | | A	examples/undocumented/libshogun/classifier_larank.cpp
| | | | |      
* | | | | commit 48a78587521fe038d801e72b15be39c8c27bb468
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Tue Jul 17 23:11:28 2012 +0400
| | | | | 
| | | | |     Made inner iterations of malsar ported code safe
| | | | | 
| | | | | M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | | | | M	src/shogun/lib/slep/malsar_low_rank.cpp
| | | | |        
* | | | |   commit b39de77fb163124535ed37c28758a128c4fdb538
|\ \ \ \ \  Merge: feee52c fc0116a
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Jul 17 11:33:54 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #656 from gsomix/buffer_protocol
| | | | | |     
| | | | | |     Fixed buffer protocol example
| | | | | |       
| * | | | | commit fc0116adfb489330150d798ca92ca6dab714ce83
|/ / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | |   Date:   Tue Jul 17 22:15:30 2012 +0400
| | | | |   
| | | | |       fixed buffer protocol example that needs numpy.version >= 1.5
| | | | |   
| | | | |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | | |        
* | | | |   commit feee52c7eb900f9a25b3121554c6672a5d8834f1
|\ \ \ \ \  Merge: 32e09ac 2251909
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Tue Jul 17 10:01:10 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #655 from karlnapf/master
| | | | | |     
| | | | | |     doxygen updates
| | | | | |       
| * | | | | commit 22519099d2616bb4a1ae425f7a3ee2ced879fcfc
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Tue Jul 17 17:59:52 2012 +0100
| | | | | | 
| | | | | |     added doc dir
| | | | | | 
| | | | | | M	.gitignore
| | | | | |       
| * | | | | commit 581c5f869e91599771c421658c5053cc83ec030d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Tue Jul 17 17:56:52 2012 +0100
| | | | | | 
| | | | | |     whitespace
| | | | | | 
| | | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | | |       
| * | | | | commit d19d98ad34bb428ec2bb9c4eb7743d4a2c96ddb3
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Tue Jul 17 17:53:04 2012 +0100
| | | | | | 
| | | | | |     documentation updates for doxygen
| | | | | | 
| | | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | | |         
* | | | | |   commit 32e09ac8e5c6c4bea0349151cb2ffb06baad1d60
|\ \ \ \ \ \  Merge: db4985d 76c6df3
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Tue Jul 17 09:30:24 2012 -0700
| | | | | |   
| | | | | |       Merge pull request #654 from karlnapf/master
| | | | | |       
| | | | | |       fixes error message
| | | | | |       
| * | | | | commit 76c6df3c78212cae73ca17f71c79cd6908b9ec9e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Tue Jul 17 17:29:42 2012 +0100
| | | | | | 
| | | | | |     fixed error message
| | | | | | 
| | | | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | | | |         
* | | | | |   commit db4985d826cb5833b6b4631e8eb834837f30e00b
|\ \ \ \ \ \  Merge: 98f4788 0d992a7
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | / / / /   Date:   Tue Jul 17 09:19:50 2012 -0700
| |/ / / /    
|/| | | |         Merge pull request #653 from karlnapf/master
| | | | |         
| | | | |         fixes cross-validation for multi-class kernel machines
| | | | |      
| * | | | commit 0d992a7e9d7811ac20c0b779fe886ec9d32e0236
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 17 17:16:45 2012 +0100
| | | | | 
| | | | |     code clean up and removing unnecesary sv commands
| | | | | 
| | | | | M	src/shogun/multiclass/MulticlassLibSVM.cpp
| | | | |      
| * | | | commit 8d97d0c2e5f1a8f8f7ab30c51822e8aa5b744d1e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 17 17:16:06 2012 +0100
| | | | | 
| | | | |     fixed store_model_features, which didnt work before, causing x-val on multi class kernel machines to fail badly
| | | | | 
| | | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | | |      
| * | | | commit 23dd339e22453ec746824c48de61bc25910addb1
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Tue Jul 17 15:35:46 2012 +0100
| | | |   
| | | |       added small comment
| | | |   
| | | |   M	src/shogun/multiclass/MulticlassSVM.h
| | | |     
* | | | commit 98f4788015fdf04e71cd0a93748707a52e52a6c3
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 16 22:46:08 2012 +0200
| | | | 
| | | |     call $MAKE from configure...
| | | | 
| | | | M	examples/undocumented/libshogun/check.sh
| | | | M	src/Makefile.template
| | | |     
* | | | commit 6b69c17be04bed164017f7d56563458229005b24
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 17 00:18:23 2012 +0400
| | | | 
| | | |     Fixed larank multiple training issue
| | | | 
| | | | M	src/shogun/multiclass/LaRank.cpp
| | | |       
* | | |   commit db85eb2147b7ed8616dccf2360ad677d099850c8
|\ \ \ \  Merge: 2f6ce63 b5127eb
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 16 13:12:59 2012 -0700
| | | | | 
| | | | |     Merge pull request #650 from gsomix/buffer_protocol
| | | | |     
| | | | |     Inplace arithmetic operators for DenseFeatures
| | | | |      
| * | | | commit b5127ebdedbd9cac6ff7c0e4c85d519a64f905a4
|/ / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | |   Date:   Mon Jul 16 23:02:59 2012 +0400
| | | |   
| | | |       inplace arithmetic operators for dense features
| | | |   
| | | |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | | |   M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
* | | | commit 2f6ce636214e4ec777cb3a084c218ac86d09da91
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 16 22:00:57 2012 +0200
| | | | 
| | | |     replace #!/bin/bash with #!/usr/bin/env bash
| | | | 
| | | | M	applications/asp/galaxy/asp.sh
| | | | M	examples/generate_documented.sh
| | | | M	examples/undocumented/cmdline_static/check.sh
| | | | M	examples/undocumented/csharp_modular/check.sh
| | | | M	examples/undocumented/java_modular/check.sh
| | | | M	examples/undocumented/libshogun/check.sh
| | | | M	examples/undocumented/lua_modular/check.sh
| | | | M	examples/undocumented/matlab_and_octave/check.sh
| | | | M	examples/undocumented/octave_modular/check.sh
| | | | M	examples/undocumented/python_modular/check.sh
| | | | M	examples/undocumented/python_static/check.sh
| | | | M	examples/undocumented/r_modular/check.sh
| | | | M	examples/undocumented/r_static/check.sh
| | | | M	examples/undocumented/ruby_modular/check.sh
| | | | M	src/.r-install.sh
| | | | M	src/shogun/base/class_list.cpp.py
| | | | M	testsuite/cmdline_static/test_all.sh
| | | | M	testsuite/libshogun/test_all.sh
| | | | M	testsuite/matlab_and_octave/test_all.sh
| | | | M	testsuite/matlab_and_octave/test_one.sh
| | | | M	testsuite/octave_modular/test_all.sh
| | | | M	testsuite/python_modular/test_all.sh
| | | | M	testsuite/python_static/test_all.sh
| | | | M	testsuite/r_modular/test_all.sh
| | | | M	testsuite/r_static/test_all.sh
| | | |     
* | | | commit 4f42e08e828445678c62047d2eb7c05f0b944557
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 16 16:25:20 2012 +0400
| | | | 
| | | |     Guarded eigen3 include
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
* | | | commit 7b9ac2551fb5a3e1914db8fd02a459661680c52f
|/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Mon Jul 16 16:24:26 2012 +0400
| | |   
| | |       Added Multitask Trace Logistic Regression
| | |   
| | |   M	src/interfaces/modular/Transfer.i
| | |   M	src/interfaces/modular/Transfer_includes.i
| | |   M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | |   A	src/shogun/lib/slep/malsar_low_rank.cpp
| | |   A	src/shogun/lib/slep/malsar_low_rank.h
| | |   M	src/shogun/mathematics/Math.h
| | |   A	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.cpp
| | |   A	src/shogun/transfer/multitask/MultitaskTraceLogisticRegression.h
| | |    
* | | commit f2051800880952cab6713f8641f6922d94634f43
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jul 16 01:22:31 2012 +0400
| | | 
| | |     Fixes for MALSAR's joint feature learning
| | | 
| | | M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | |    
* | | commit f146cab51b22aa7dc38a42e766e681fda3db9940
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 15 23:38:22 2012 +0400
| | | 
| | |     Fixed guard of L1/L2 logistic regression
| | | 
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | |    
* | | commit 7ecdf44cc013f1219db50b4e05f21a5832f7a390
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 15 23:30:20 2012 +0400
| | | 
| | |     Guarded new L1/L2 logistic regression in for eigen3
| | | 
| | | M	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| | | M	src/shogun/lib/slep/malsar_joint_feature_learning.h
| | | M	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| | |    
* | | commit 629358da2a195e6bf728ddd546d3754bac2e4eb9
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Sun Jul 15 23:05:35 2012 +0400
| |   
| |       Added Multitask L1/L2 logistic regression
| |   
| |   M	src/interfaces/modular/Transfer.i
| |   M	src/interfaces/modular/Transfer_includes.i
| |   A	src/shogun/lib/slep/malsar_joint_feature_learning.cpp
| |   A	src/shogun/lib/slep/malsar_joint_feature_learning.h
| |   A	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.cpp
| |   A	src/shogun/transfer/multitask/MultitaskL1L2LogisticRegression.h
| |   
* | commit fc2e96c5dfa7914e25159bf5d8188e4084030de6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 15 00:36:27 2012 +0400
| | 
| |     Introduced ModelSelectionOutput class
| | 
| | M	src/interfaces/modular/ModelSelection.i
| | M	src/interfaces/modular/ModelSelection_includes.i
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/evaluation/GradientEvaluation.cpp
| | M	src/shogun/evaluation/GradientEvaluation.h
| | M	src/shogun/evaluation/MachineEvaluation.h
| | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | M	src/shogun/modelselection/GridSearchModelSelection.h
| | M	src/shogun/modelselection/ModelSelection.cpp
| | M	src/shogun/modelselection/ModelSelection.h
| | A	src/shogun/modelselection/ModelSelectionOutput.cpp
| | A	src/shogun/modelselection/ModelSelectionOutput.h
| |     
* |   commit eb98b84eeaeb54e4d22bda933282a076f8e1af90
|\ \  Merge: 1ab1290 3385475
| |/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Sat Jul 14 12:52:56 2012 -0700
| |   
| |       Merge pull request #644 from puffin444/master
| |       
| |       ARD versions of Linear and Gaussian Kernels. Gradient Testing.
| |   
| * commit 338547592d145e71f9eb09c3f053ba92b0a1fca8
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Fri Jul 13 15:15:32 2012 +0000
| | 
| |     Cleaned up some ARD code.
| | 
| | M	src/shogun/kernel/GaussianARDKernel.cpp
| | M	src/shogun/kernel/GaussianARDKernel.h
| | M	src/shogun/kernel/LinearARDKernel.cpp
| | M	src/shogun/kernel/LinearARDKernel.h
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| |   
| * commit 8246e945eab9cdcc4f564583209835599ecd3d91
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Thu Jul 12 14:26:31 2012 +0000
| | 
| |     Added Gradient checking in the GradientModelSelection model. Added
| |     ARD versions of Linear and Gaussian Kernels
| | 
| | A	src/shogun/kernel/GaussianARDKernel.cpp
| | A	src/shogun/kernel/GaussianARDKernel.h
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | A	src/shogun/kernel/LinearARDKernel.cpp
| | A	src/shogun/kernel/LinearARDKernel.h
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| | M	src/shogun/modelselection/GradientModelSelection.h
| |     
* |   commit 1ab12903cc159fabcf12aeb11ca2a4f83dfc7717
|\ \  Merge: b3303c6 4ef2573
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 14 11:32:37 2012 -0700
| | | 
| | |     Merge pull request #648 from gsomix/buffer_protocol
| | |     
| | |     Minor fixes for buffer protocol
| | |    
| * | commit 4ef25739b1fa9727e0ee8cd3dfa46ccad47beaaa
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sat Jul 14 22:14:09 2012 +0400
| |   
| |       minor fixes for buffer protocol
| |   
| |   M	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| |   M	src/interfaces/modular/Features.i
| |   M	src/interfaces/python_modular/swig_typemaps.i
| |     
* |   commit b3303c678682ea58821d94b968eb511cb47c217a
|\ \  Merge: 3523a55 ccb9c80
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 14 04:20:41 2012 -0700
| | | 
| | |     Merge pull request #647 from gsomix/buffer_protocol
| | |     
| | |     Fixed compile error in buffer protocol
| | |    
| * | commit ccb9c804dfff8786c7d053d8d57dc6d854c05cef
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sat Jul 14 15:16:42 2012 +0400
| |   
| |       fixed compile error, buffer stuff now is in typemaps
| |   
| |   M	src/interfaces/modular/Features.i
| |   M	src/interfaces/modular/modshogun.i
| |   D	src/interfaces/python_modular/python_buffer_protocol.i
| |   M	src/interfaces/python_modular/swig_typemaps.i
| |   
* | commit 3523a551d47aca8279460529c9f91885f7cbc24a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sat Jul 14 14:36:43 2012 +0400
| | 
| |     Get rid of wrong SGReferencedData based assignment when using CMap
| | 
| | M	src/shogun/lib/Map.h
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| |     
* |   commit 5068d3ea29bdec594ff8e5fc48d582521a3d7e89
|\ \  Merge: a6d49a5 cc22b2c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 13 23:08:40 2012 -0700
| | | 
| | |     Merge pull request #646 from gsomix/buffer_protocol
| | |     
| | |     Fixes for buffer protocol
| | |    
| * | commit cc22b2cf7e5304842e3040bbedfe8fef7585225a
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sat Jul 14 02:21:06 2012 +0400
| | | 
| | |     added buffer protocol example
| | | 
| | | D	examples/undocumented/python_modular/features_dense_buffer_modular.py
| | | A	examples/undocumented/python_modular/features_dense_buffer_protocol_modular.py
| | |    
| * | commit d450473b9fd33c402b0916af1d47c11a02fc734e
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sat Jul 14 02:18:39 2012 +0400
| |   
| |       fixed warnings and bugs
| |   
| |   M	src/interfaces/modular/Features.i
| |   M	src/interfaces/modular/modshogun.i
| |   M	src/interfaces/python_modular/python_buffer_protocol.i
| |     
* |   commit a6d49a532b42af957a010f9f96f80b8fb2ca2f39
|\ \  Merge: fdd7763 caae3ab
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 13 13:23:43 2012 -0700
| | | 
| | |     Merge pull request #642 from gsomix/buffer_protocol
| | |     
| | |     [Check it!] Preliminary design of buffer protocol stuff.
| | |    
| * | commit caae3ab7b925f47211e57ba1382782750434150b
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sat Jul 14 00:22:40 2012 +0400
| | | 
| | |     renamed buffer helper module
| | | 
| | | M	src/interfaces/modular/modshogun.i
| | | D	src/interfaces/python_modular/buffer_helpers.i
| | | A	src/interfaces/python_modular/python_buffer_protocol.i
| | |    
| * | commit 40b12466ce3ad300ecbc98dd79724279c13dac13
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Jul 13 23:41:57 2012 +0400
| | | 
| | |     buffer protocol for DenseFeatures
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/modshogun.i
| | |    
| * | commit 08b1c6c7d663bc121da8a2e4987c3e668949db4b
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Jul 13 23:41:24 2012 +0400
| | | 
| | |     buffer stuff separated to file
| | | 
| | | A	src/interfaces/python_modular/buffer_helpers.i
| | |    
| * | commit a184880c06fae3c283a6bc24cbe79d6481b98ad4
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Thu Jul 12 21:57:00 2012 +0400
| |   
| |       preliminary design of buffer protocol stuff
| |   
| |   A	examples/undocumented/python_modular/features_dense_buffer_modular.py
| |   M	src/interfaces/modular/Features.i
| |   
* | commit fdd77636bfc6f1e968a1d3be5b90e18281326cdd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 13 11:23:08 2012 +0200
| | 
| |     Revert "fixes a compile error when LAPACK isnt installed"
| |     
| |     This reverts commit c464e7a041b57ab39d2581019959f1184a4d1717.
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |     
* |   commit 4d4855e7f91fd1114f3a73e2cd4c4077e49d25b1
|\ \  Merge: 20bc943 c464e7a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 13 01:04:47 2012 -0700
| | | 
| | |     Merge pull request #645 from karlnapf/master
| | |     
| | |     fix for compile error
| | |    
| * | commit c464e7a041b57ab39d2581019959f1184a4d1717
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 13 09:02:47 2012 +0100
| | | 
| | |     fixes a compile error when LAPACK isnt installed
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | |    
* | | commit 20bc943ca026ddda4c5bdb324c551abec28f1889
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 13 09:31:21 2012 +0200
| | | 
| | |     fix compile errors in slep and mmd when lapack is not available
| | | 
| | | M	src/shogun/lib/slep/slep_accel_grad_mtl.cpp
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |      
* | |   commit 2d27e44853dc23a9ce33b6859b23e07c8a8eff7e
|\ \ \  Merge: 5256b36 9368244
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 12 11:11:42 2012 -0700
| | |   
| | |       Merge pull request #643 from karlnapf/master
| | |       
| | |       latex class documentation :)
| | |    
| * | commit 9368244096fe57dd560b01246f1906d93c505879
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 12 19:08:55 2012 +0100
| | | 
| | |     played a bit around with doxygen latex
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |      
* | |   commit 5256b36724dbcb339ad5054d41428ae60a83a582
|\ \ \  Merge: cfb023b 02496a4
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 12 10:40:22 2012 -0700
| | |   
| | |       Merge pull request #641 from karlnapf/master
| | |       
| | |       python example and CCombinedFeatures::create_merged_copy
| | |    
| * | commit 02496a4dc91a3d207d811f0f99e9056d8b2e608a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 12 18:38:08 2012 +0100
| | | 
| | |     added some stuff to make things clearer
| | | 
| | | M	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| | |    
| * | commit 7118369c9af63722413940d6e8dbee4d387d5f4d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 12 18:37:26 2012 +0100
| | | 
| | |     -added methods for setting optimization parameters
| | |     -documentation updates
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |    
| * | commit d524ac1991a92a8d2bb4bff70f2f3d2a9115a662
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 11 15:05:04 2012 +0100
| | | 
| | |     initial work on a larger example
| | | 
| | | A	examples/undocumented/python_modular/statistics_linear_time_mmd_kernel_choice.py
| | |    
| * | commit cae9788f519c422dd615e0599d29c2629897b6b8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 11 14:42:40 2012 +0100
| | | 
| | |     added test for combined features
| | | 
| | | M	examples/undocumented/libshogun/features_create_merged_copy.cpp
| | |    
| * | commit e5a87d268db34441d653f87ea891e1c7eb6c2df3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 11 14:42:27 2012 +0100
| | | 
| | |     added create_merged_copy()
| | | 
| | | M	src/shogun/features/CombinedFeatures.cpp
| | | M	src/shogun/features/CombinedFeatures.h
| | |    
| * | commit 2735b0390d514f3a5ae8f40ba593d40e18a828bc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 11 14:09:27 2012 +0100
| | | 
| | |     added assertion against MATLAB results
| | | 
| | | M	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
| | |    
| * | commit a65d3363d66be5179da40c40f16e03d7ebc7037c
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jul 11 14:05:47 2012 +0100
| |   
| |       minor cleanups and removed inition regularization
| |   
| |   M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
* | commit cfb023b7f5dcd3d77e471891507e3c0195f53e83
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Thu Jul 12 18:35:12 2012 +0400
|   
|       Introduced trace norm multitask LS regression
|   
|   A	src/shogun/lib/slep/slep_accel_grad_mtl.cpp
|   A	src/shogun/lib/slep/slep_accel_grad_mtl.h
|   A	src/shogun/transfer/multitask/TraceNormMultitaskLSRegression.cpp
|   A	src/shogun/transfer/multitask/TraceNormMultitaskLSRegression.h
|  
* commit a46a5cfc4fe7b70bd9601e17b4c4a39df43564b0
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Jul 12 01:25:13 2012 +0400
| 
|     Removed unhandled case in switch warning cause
| 
| M	src/shogun/kernel/Kernel.cpp
|    
*   commit 7b220bf0ae5006ffb9c4c0aaa269320e33a9037b
|\  Merge: 179b38e 7a90611
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Jul 12 00:55:23 2012 +0400
| | 
| |     Merge branch 'master' of https://github.com/puffin444/shogun
| |   
| * commit 7a90611829e7dce0eb789aad69a395c3aab1a0af
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Wed Jul 11 16:11:49 2012 +0000
| | 
| |     Fixed update bug in InferenceMethod
| | 
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| |   
| * commit d5a2772ac25b6cb6a16d0927abc00d6d56846f6d
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Wed Jul 11 15:56:57 2012 +0000
| | 
| |     Fixed bug in Inference Method initialization.
| | 
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| |     
* |   commit 179b38ea23ba5a3e9bbea80383685af27dfe1418
|\ \  Merge: 90c4bca 4173e8b
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jul 11 11:43:47 2012 -0700
| |   
| |       Merge pull request #638 from puffin444/master
| |       
| |       Sum and Product Gradients
| |   
| * commit 4173e8b7521c1337e18b1aa5e7fb0edf081b71a9
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Wed Jul 11 13:25:03 2012 +0000
| | 
| |     Fixed some things with allocation.
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/evaluation/GradientCriterion.cpp
| | M	src/shogun/evaluation/GradientCriterion.h
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| | M	src/shogun/regression/gp/ZeroMean.cpp
| |     
| *   commit 6acd01c9a93cb1582a63e9359f2d814d7173579a
| |\  Merge: eff482b 90c4bca
| |/  Author: puffin444 <walke434@msu.edu>
|/|   Date:   Tue Jul 10 20:56:32 2012 +0000
| |   
| |       Merge remote branch 'upstream/master'
| |       
| |       Conflicts:
| |       	src/shogun/lib/Map.h
| |     
* |   commit 90c4bcaca31f30abb121694d5aa7c3d4568f5c96
|\ \  Merge: 2aba715 b8b8336
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 10 09:56:10 2012 -0700
| | | 
| | |     Merge pull request #637 from karlnapf/master
| | |     
| | |     optimization for kernel weights with libqp for linear time mmd
| | |    
| * | commit b8b8336d2d667cd490c1dd276e8ad2931f6a1bdb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 10 17:53:40 2012 +0100
| | | 
| | |     added example for combined kernel weights optimization
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/statistics_linear_time_mmd_kernel_choice.cpp
| | |    
| * | commit e1b4a402b69a39c1833a846eab1c93826057681a
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Jul 10 17:53:27 2012 +0100
| |   
| |       added optimization of combined kernel weights
| |   
| |   M	src/shogun/statistics/LinearTimeMMD.cpp
| |   M	src/shogun/statistics/LinearTimeMMD.h
| |   
* | commit 2aba7154239fee42cec4a8e411700e09e8da45c6
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Jul 10 16:33:29 2012 +0400
| | 
| |     Made feature block logistic regression outputs use sigmoid
| | 
| | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | M	src/shogun/classifier/FeatureBlockLogisticRegression.h
| | M	src/shogun/machine/LinearMachine.h
| |   
* | commit 80adbb417f57e90b8f057b7a5202057f90ae0192
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Jul 10 16:32:24 2012 +0400
| | 
| |     Fixed num steps computation of model selection
| | 
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| |     
* |   commit 731fafeabf592dc3ebdd758fe2e308353c12df90
|\ \  Merge: dceddcf 6aae77b
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 10 05:28:23 2012 -0700
| | | 
| | |     Merge pull request #636 from gsomix/trace_mallocs
| | |     
| | |     Fixed some bugs in CMap
| | |    
| * | commit 6aae77bdcfc9dc47002629ff32b62100cc4fb037
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue Jul 10 16:26:22 2012 +0400
| | | 
| | |     fixed some bugs
| | | 
| | | M	src/shogun/lib/Map.h
| | |    
* | | commit dceddcf8c8b06977b69067f5b1cbd64d471b1206
|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| |   Date:   Tue Jul 10 16:24:12 2012 +0400
| |   
| |       Fixed MKL training double free
| |   
| |   M	src/shogun/classifier/mkl/MKL.cpp
| |     
* |   commit fa071cbf3ab298b99a7e25e0b3dbe85fde41cdf2
|\ \  Merge: e10bc96 ab7ddc2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 10 02:19:54 2012 -0700
| | | 
| | |     Merge pull request #635 from karlnapf/master
| | |     
| | |     fix for LAPACK compile error
| | |    
| * | commit ab7ddc2e791b13cb06d6212f8bbe044768694e06
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 10 10:17:27 2012 +0100
| | | 
| | |     optimization only possible when lapack is there
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |    
| * | commit 45cb8f0ad7619bef48e49b6d308f65405f89463a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 10 10:16:12 2012 +0100
| | | 
| | |     fixed error
| | | 
| | | M	src/shogun/mathematics/Statistics.cpp
| | |    
| | * commit eff482b883a03408e680ae80eda6560cfe982ae0
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Tue Jul 10 20:53:51 2012 +0000
| | | 
| | |     Finalized code for sum and product kernel gradients. Examples have been added.
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | D	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | A	examples/undocumented/libshogun/regression_gaussian_process_gaussian.cpp
| | | A	examples/undocumented/libshogun/regression_gaussian_process_product.cpp
| | | A	examples/undocumented/libshogun/regression_gaussian_process_sum.cpp
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | M	src/shogun/evaluation/GradientEvaluation.h
| | | M	src/shogun/features/HashedWDFeatures.cpp
| | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | M	src/shogun/kernel/CombinedKernel.cpp
| | | M	src/shogun/kernel/CombinedKernel.h
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/kernel/GaussianKernel.h
| | | M	src/shogun/kernel/Kernel.h
| | | M	src/shogun/kernel/ProductKernel.cpp
| | | M	src/shogun/kernel/ProductKernel.h
| | | M	src/shogun/lib/List.h
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | M	src/shogun/regression/gp/MeanFunction.cpp
| | | M	src/shogun/regression/gp/MeanFunction.h
| | |      
| | *   commit 93be26c09a54e1ae41d6295d2683dec4685e8725
| | |\  Merge: 774c821 e10bc96
| |_|/  Author: puffin444 <walke434@msu.edu>
|/| |   Date:   Tue Jul 10 00:08:49 2012 +0000
| | |   
| | |       Merge remote branch 'upstream/master'
| | |      
* | |   commit e10bc966ca16b078451307411daa9447e2247430
|\ \ \  Merge: 371587b ed3c4b6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 9 15:23:10 2012 -0700
| | | | 
| | | |     Merge pull request #633 from gsomix/trace_mallocs
| | | |     
| | | |     Added pthreads support to CMap
| | | |     
| * | | commit ed3c4b66b0356076698a2cc304e469880d4ebe2b
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Jul 9 22:47:51 2012 +0400
| | | | 
| | | |     added support for threads
| | | | 
| | | | M	src/shogun/lib/Map.h
| | | |       
* | | |   commit 371587b2a4b3f549bcc81033d5e61b7d4edcc2e3
|\ \ \ \  Merge: da0a349 754f1c6
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| / /   Date:   Mon Jul 9 14:25:36 2012 -0700
| |/ /    
| | |         Merge pull request #634 from karlnapf/master
| | |         
| | |         stuff
| | |    
| * | commit 754f1c65859e0448b3d43f2d4e038fdbdd480d68
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 22:22:57 2012 +0100
| | | 
| | |     more work on kernel selection
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | |    
| * | commit 75355e370209572f36501acfc182e49a6178310f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 21:05:25 2012 +0100
| | | 
| | |     added comment about LAPACK
| | | 
| | | M	src/shogun/mathematics/Statistics.h
| | |    
| * | commit c3b666b22fd90b92cd311ee31941f70fbbd1d148
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 21:04:21 2012 +0100
| | | 
| | |     added test for covariance matrix method
| | | 
| | | M	examples/undocumented/libshogun/statistics.cpp
| | |    
| * | commit e6d020a8868f2d9d879a0ccd382929bd534b1db5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 21:03:58 2012 +0100
| | | 
| | |     initial add of (not yet working) optimize_kernel_weights method
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | |    
| * | commit 6e18467691f185f097521f41049fad123c92abdf
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 21:03:33 2012 +0100
| | | 
| | |     added covariance_matrix method
| | | 
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | |    
| * | commit 9899aad9e10be7eb7400ee43f63927be279ee4e2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 21:03:18 2012 +0100
| | | 
| | |     added remove_column_means method that removes the mean of each column from it
| | | 
| | | M	src/shogun/lib/SGMatrix.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | |    
| * | commit 88caceff537b29acb8ae00158adaada9d605de9c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 9 17:30:07 2012 +0100
| | | 
| | |     removed unnecessary include
| | | 
| | | M	src/shogun/evaluation/MachineEvaluation.h
| | |    
| * | commit ba7b2d6b6d5e7149bc1ca016c67510892d740ca4
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Jul 9 17:23:44 2012 +0100
| |   
| |       clean up
| |   
| |   M	examples/undocumented/libshogun/statistics_hsic.cpp
| |   
* | commit da0a3496f5e3a280e74bcabff8d5bbb0c9409efa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 9 19:56:09 2012 +0200
| | 
| |     Revert "Made lapack use mallocs instead of SG_MALLOCs"
| |     
| |     This reverts commit 47a429793820105419bc432369f2fee352ae6871. We have to
| |     find a better fix using SG_MALLOC here.
| | 
| | M	src/shogun/mathematics/lapack.cpp
| |   
* | commit 47a429793820105419bc432369f2fee352ae6871
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Jul 9 12:43:51 2012 +0400
| | 
| |     Made lapack use mallocs instead of SG_MALLOCs
| | 
| | M	src/shogun/mathematics/lapack.cpp
| |   
| * commit 774c821f74ee3452d91eea09edc434e5ed4e2512
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Mon Jul 9 00:06:16 2012 +0000
| | 
| |     Added support for product and combined kernel derivatives. Gradient
| |     Selection framework can now deal with nested and duplicate name
| |     parameters.
| | 
| | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/evaluation/DifferentiableFunction.h
| | M	src/shogun/evaluation/GradientEvaluation.cpp
| | M	src/shogun/evaluation/GradientResult.h
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.h
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.h
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/ProductKernel.cpp
| | M	src/shogun/kernel/ProductKernel.h
| | M	src/shogun/lib/List.h
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/modelselection/ParameterCombination.h
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/GaussianProcessRegression.h
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| | M	src/shogun/regression/gp/InferenceMethod.h
| |     
| *   commit 10be101f8dc5a92c0174389b0b9a16aa47083332
| |\  Merge: d091d20 3702954
| |/  Author: puffin444 <walke434@msu.edu>
|/|   Date:   Sun Jul 8 23:21:24 2012 +0000
| |   
| |       Merge remote branch 'upstream/master'
| |   
* | commit 3702954a9ef3a0418a7ce4103e2551206191d1fd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 8 21:41:21 2012 +0200
| | 
| |     init(lhs,data) even for combined kernel in apply()
| | 
| | M	src/shogun/machine/KernelMachine.cpp
| |   
* | commit c23a3c167b150ab6bd0922665e72b5d16fb4992f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 22:51:21 2012 +0400
| | 
| |     Made evaluation direction verbose
| | 
| | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| |   
* | commit f39aa5cb80d23744188634d098881456de6763f4
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 22:50:54 2012 +0400
| | 
| |     Commented out gradient and objective value debug prints
| | 
| | M	src/shogun/lib/slep/slep_logistic.cpp
| |   
* | commit 3da93b3ce0d4cec8552087c5c8b91c9426cfc06a
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 22:50:12 2012 +0400
| | 
| |     Removed root feature from G/ind
| | 
| | M	src/shogun/lib/IndexBlockTree.cpp
| |     
* |   commit c593061648fcc2f3b8908509074d0e8eb702211d
|\ \  Merge: 7cfd299 94a6183
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 11:46:27 2012 -0700
| | | 
| | |     Merge pull request #632 from karlnapf/master
| | |     
| | |     fix for an example and debug messages
| | |    
| * | commit 94a618324be3c5f4d6791372f849904a2e40edfa
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 19:45:03 2012 +0100
| | | 
| | |     removed /* */ to make locked evaluation example work again
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| * | commit 96f79427c669926dca226b44fba02559a67fac5b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 19:44:32 2012 +0100
| | | 
| | |     added some debug messages
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | |    
| * | commit 1bc6e550a01be7d531c422edf108dd7cb8236faa
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Jul 8 19:44:23 2012 +0100
| |   
| |       added a proper error message if number of labels are different
| |   
| |   M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| |   
* | commit 7cfd2994914132c032d2a729d9a3185657cb57d3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 8 19:58:40 2012 +0200
| | 
| |     fix unsigned / signed comparison warning
| | 
| | M	src/shogun/io/AsciiFile.cpp
| |     
* |   commit f842ad6f54c515880bf9e4c3b6ac387dc0d1dcb4
|\ \  Merge: 28c06ce 564e0bb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 10:43:25 2012 -0700
| | | 
| | |     Merge pull request #631 from karlnapf/master
| | |     
| | |     some fixes and a test for HSIC gamma
| | |    
| * | commit 564e0bbab9c410e51319c054b15ead0087e58793
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 18:41:57 2012 +0100
| | | 
| | |     added test for HSIC gamma based test
| | | 
| | | M	examples/undocumented/libshogun/statistics_hsic.cpp
| | |    
| * | commit 76ba56d9a2dc191cfbbcdb6534c62b1912c803e6
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 18:41:47 2012 +0100
| | | 
| | |     comment update
| | | 
| | | M	src/shogun/statistics/HSIC.h
| | |    
| * | commit 3e19962f1031075d3c4404d50d0b7a4ad36f465f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jul 8 18:41:39 2012 +0100
| | | 
| | |     fixes, gamma test should work now
| | | 
| | | M	src/shogun/statistics/HSIC.cpp
| | |    
| * | commit e1db78e59c60dc0111d049dca777eb19762d7e03
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sun Jul 8 18:41:20 2012 +0100
| |   
| |       removed compiler warning
| |   
| |   M	src/shogun/statistics/IndependenceTestStatistic.cpp
| |   M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| |     
* |   commit 28c06ce21772e79529bf3caa39f8b484bae0dcff
|\ \  Merge: ee792cd 643ee74
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 8 10:12:04 2012 -0700
| | | 
| | |     Merge pull request #629 from vigsterkr/fbsd
| | |     
| | |     Fixes for FreeBSD support
| | |    
| * | commit 643ee74dc7f43c93dc27c7be62c7349079dc17b5
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Jul 8 17:10:04 2012 +0000
| | | 
| | |     True fix for getline under FreeBSD
| | | 
| | | M	src/shogun/io/AsciiFile.cpp
| | |    
| * | commit 69d42744dff01bf9208151d829fa7e204926227d
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Jul 8 14:47:19 2012 +0200
| | | 
| | |     Fix getline function definition for FreeBSD
| | |     Check man 3 getline for details on a FreeBSD machine:
| | |     http://www.unix.com/man-page/freebsd/3/getline/
| | | 
| | | M	src/shogun/io/AsciiFile.cpp
| | |    
| * | commit 97763bbc134688dc412b6c735fa076d85e8448b9
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Jul 8 14:33:43 2012 +0200
| | | 
| | |     gcc compiler version check
| | |     Due to bug 23287 of gcc (see http://gcc.gnu.org/bugzilla/show_bug.cgi?id=23287)
| | |     SparseFeatures.cpp:95 will fail to compile with gcc version < 4.3.x
| | |     This bug will never be fixed in earlier branches of 4 thus i've
| | |     added the version check for it.
| | | 
| | | M	src/configure
| | |    
| * | commit 7b3ee5ae63d2dcde25cc70e4074d75ecd11b0f98
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sun Jul 8 00:20:33 2012 +0200
| | | 
| | |     Fix configure script for FreeBSD
| | |     the bash is usually not at /bin/bash on a BSD system
| | |     Atlas has different library naming
| | | 
| | | M	src/configure
| | |      
* | |   commit ee792cd1b55347ae3a36c1d5d8a6cf6c3f337596
|\ \ \  Merge: 0746d4a e2ce7e7
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Sun Jul 8 09:56:29 2012 -0700
| | |   
| | |       Merge pull request #630 from vigsterkr/latent
| | |       
| | |       Fix indentation to comply with shogun standard
| | |    
| * | commit e2ce7e783ee19cecfaabfc1e0262b2ad1fae9772
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Sun Jul 8 15:01:44 2012 +0000
| |   
| |       Fix indentation to comply with shogun standard
| |   
| |   M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| |   M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| |   M	src/shogun/classifier/svm/LatentLinearMachine.h
| |   M	src/shogun/features/LatentFeatures.cpp
| |   M	src/shogun/features/LatentFeatures.h
| |   M	src/shogun/labels/LatentLabels.cpp
| |   M	src/shogun/labels/LatentLabels.h
| |   
* | commit 0746d4a052bfb55fd339e37d20bbb7df628b2c49
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 8 03:36:05 2012 +0200
| | 
| |     ignore constructor with two SGVector arguments in csharp interface
| |     since it is currently causing build failures
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit a838aaa11a3cc989e453eb17aa57d7ce8bdd0da1
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 04:51:43 2012 +0400
| | 
| |     Made print result virtual and available in EvaluationResult
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/evaluation/EvaluationResult.h
| |   
* | commit f3871d06c0c06f3bfe5c9d8550110ec283038014
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 04:12:41 2012 +0400
| | 
| |     Made parameters work for SLEP FBLR
| | 
| | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | M	src/shogun/machine/SLEPMachine.cpp
| |   
* | commit be76f9993dfb8ae69582a02bfb3891ec917ad61f
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 03:00:27 2012 +0400
| | 
| |     Revert "Added PegasosSVM"
| |     
| |     This reverts commit 102ecb0d0114b41af4ab3c31b62cd753968f562d.
| |     
| |     Conflicts:
| |     
| |     	src/interfaces/modular/Classifier.i
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/interfaces/modular/Classifier_includes.i
| | D	src/shogun/classifier/svm/PegasosSVM.cpp
| | D	src/shogun/classifier/svm/PegasosSVM.h
| | D	src/shogun/optimization/pegasos/pegasos_optimize.cpp
| | D	src/shogun/optimization/pegasos/pegasos_optimize.h
| |   
* | commit bfa3239987a7831f96945aa69c158adbfff65609
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 02:59:25 2012 +0400
| | 
| |     Made OnlineLibLinear fields private
| | 
| | M	src/shogun/classifier/svm/OnlineLibLinear.h
| |   
* | commit b32d3e011bc5892f929166beb450aae09366f1a1
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 02:54:54 2012 +0400
| | 
| |     Fixed kernel and bmrm warnings
| | 
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/structure/libbmrm.cpp
| |   
* | commit 77ab1329c966b952c91e09c0c1bf7a48f29fa967
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 02:45:17 2012 +0400
| | 
| |     Fixed MKL libshogun example
| | 
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| |   
* | commit e510cf00af59d22dece9ce13030ccfadb1fb86d8
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Sun Jul 8 01:34:22 2012 +0400
| | 
| |     Fixed uninitialized result vector
| |     in kernel machine causing results to
| |     be incorrect in case of batch evaluation
| | 
| | M	src/shogun/machine/KernelMachine.cpp
| |     
* |   commit d8d1b438115a43a55224b51336eaee9b9765f7fc
|\ \  Merge: afbc2bc 864211e
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 7 23:52:14 2012 +0400
| | | 
| | |     Merge branch 'master' of git://github.com/puffin444/shogun
| | |      
| | *   commit d091d207259da13f4f2f631c0d53e6470210e469
| | |\  Merge: 864211e afbc2bc
| |/ /  Author: puffin444 <walke434@msu.edu>
| | /   Date:   Sat Jul 7 14:09:00 2012 +0000
| |/    
|/|         Merge remote branch 'upstream/master'
| |     
* |   commit afbc2bc5c218d813ef047138ac17f573c66c4221
|\ \  Merge: 3717f65 c5b989a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sat Jul 7 21:07:40 2012 +0400
| | | 
| | |     Merge branch 'latent' of git://github.com/vigsterkr/shogun
| | |    
| * | commit c5b989ae50df33a702823870a11e9a73ac40e9d7
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sat Jul 7 13:14:37 2012 +0000
| | | 
| | |     Change if/for/while() to if/for/while ()
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/labels/LatentLabels.cpp
| | |    
| * | commit b34194f10e3ae022c6d815b76c8dc38720a3b27d
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sat Jul 7 00:08:18 2012 +0000
| | | 
| | |     Little bit of commenting in LatentLinearMachine
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | |    
| * | commit 9510cbb63d8508e9cfa614bf431f04a41a8372ea
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Sat Jul 7 00:05:14 2012 +0000
| | | 
| | |     Change from foo () to foo() function definition and calls
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | M	src/shogun/classifier/svm/SVMOcas.h
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/features/LatentFeatures.h
| | | M	src/shogun/labels/LatentLabels.cpp
| | | M	src/shogun/labels/LatentLabels.h
| | |    
| * | commit c91cbea8609d4c048d28024888dc0885192a325d
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 23:47:24 2012 +0000
| | | 
| | |     Removing some commented debugging messages
| | |     And changing from printing to stderr to SG_SERROR
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | |    
| * | commit b2e8d9c28aae98bdb338f3706d4db7345bc0afc8
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 23:42:28 2012 +0000
| | | 
| | |     Remove the extra new line introduced in SVMOcas
| | | 
| | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | |    
| * | commit 7c03baf6c00b6dec72209a6b482d4f73b2f84c3f
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 23:38:55 2012 +0000
| | | 
| | |     Change from dynamic_cast to obtain_from_generic function
| | |     in order to check the type of the label and feature
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/features/LatentFeatures.h
| | | M	src/shogun/labels/LatentLabels.cpp
| | | M	src/shogun/labels/LatentLabels.h
| | |    
| * | commit 368a1cd4ff143044fb5d45980f893f1a8052dc5c
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 22:37:41 2012 +0000
| | | 
| | |     Add getter function for primal objective value
| | | 
| | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | |    
| * | commit d1489741340eb251bc955ad8940bb8feb9324fcc
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 22:12:06 2012 +0000
| | | 
| | |     Use the DenseLabels api for set/get labels
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | |    
| * | commit 2db68a1d1a04212c761ad77c3d46ab4747a9e66f
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 22:11:22 2012 +0000
| | | 
| | |     Change to get_array_size from get_num_elements in DynamicObjectArray
| | | 
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/labels/LatentLabels.cpp
| | | M	src/shogun/labels/LatentLabels.h
| | |    
| * | commit 19c473d4bbccb28fcf4a0e5a7a70b1f944236564
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 21:20:05 2012 +0000
| | | 
| | |     Consolidate latent classifier example with the new API
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | |    
| * | commit 3d11af42c19a27317d462535c7fe7d9762d28190
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 21:19:12 2012 +0000
| | | 
| | |     LatentFeatures fix for DynamicObjectArray
| | | 
| | | M	src/shogun/features/LatentFeatures.cpp
| | |    
| * | commit 825e0f6ff70f556badbbed760338b8b920f608c2
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 21:17:49 2012 +0000
| | | 
| | |     LatentLabels is derived from BinaryLabels
| | | 
| | | M	src/shogun/labels/LatentLabels.cpp
| | | M	src/shogun/labels/LatentLabels.h
| | |    
| * | commit 5b5ef0d83a5dc6ecead8bcd8573d25acedd97b52
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 21:17:14 2012 +0000
| | | 
| | |     Consolidate LatentLinearMachine with the new API
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | M	src/shogun/machine/Machine.h
| | |    
| * | commit 6314a238ed474ee8b35630a58b05535051f172d0
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 20:32:35 2012 +0000
| | | 
| | |     Consolidate LatentFeatures to the new API
| | | 
| | | M	src/shogun/features/FeatureTypes.h
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/features/LatentFeatures.h
| | |    
| * | commit 4dcd9db008d00d09abed04baaaa45f1f21b2f562
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 20:12:59 2012 +0000
| | | 
| | |     Change from SimpleFeatures to DenseFeatures
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit 89d1375604d87f75970aef1f6ea3bd5c06bc2178
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Jul 6 20:09:25 2012 +0000
| | | 
| | |     Consolidate LatentLabels to the new API
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | M	src/shogun/features/LatentFeatures.h
| | | D	src/shogun/features/LatentLabels.cpp
| | | D	src/shogun/features/LatentLabels.h
| | | M	src/shogun/labels/LabelTypes.h
| | | A	src/shogun/labels/LatentLabels.cpp
| | | A	src/shogun/labels/LatentLabels.h
| | |    
| * | commit ec0ebffdea64b392c6c60c3d0ea5198c17e9f2f9
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Wed Jun 6 01:55:48 2012 +0200
| | | 
| | |     Import basic hog based object detector example
| | | 
| | | M	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | |    
| * | commit 20a604e44d5a472fdf134529c2c017a0da4a9be8
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 23:31:15 2012 +0200
| | | 
| | |     Consolidate naming convenstions
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit a530bc94426ce4992103c6bc4dbd4615c0d00814
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 23:01:02 2012 +0200
| | | 
| | |     Consolidate LatentLinearMachine with the new changes * Change how the PSI is stored and calculated * add infer function * add classification logic
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit df087f20783819a85ee0361c145442dd5e5825c7
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 22:27:32 2012 +0200
| | | 
| | |     Change LatentFeatures that it can hold any sorts of input
| | | 
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/features/LatentFeatures.h
| | |    
| * | commit 33342d3614e403e89ff3e9010c44eb9f9d8078b6
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 22:12:54 2012 +0200
| | | 
| | |     Differentiate get/set for latent and simple label
| | | 
| | | M	src/shogun/features/LatentLabels.cpp
| | | M	src/shogun/features/LatentLabels.h
| | |    
| * | commit 7b4eefd84de098993933f77f3c79850434d8a4a2
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 21:44:21 2012 +0200
| | | 
| | |     LatentLabels implementation
| | | 
| | | M	src/shogun/features/LatentLabels.cpp
| | | M	src/shogun/features/LatentLabels.h
| | |    
| * | commit 7ebe42224b08e5bddbee8e769fa57d28b5b49b63
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 21:24:21 2012 +0200
| | | 
| | |     Fix idents
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | M	src/shogun/features/LatentFeatures.cpp
| | | M	src/shogun/features/LatentFeatures.h
| | | M	src/shogun/features/LatentLabels.cpp
| | | M	src/shogun/features/LatentLabels.h
| | |    
| * | commit a6a715cfe9151870d6b99974568d044f25773f04
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Jun 5 21:04:21 2012 +0200
| | | 
| | |     LatentLinearMachine train function and a basic example
| | | 
| | | A	examples/undocumented/libshogun/classifier_latent_svm.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | | M	src/shogun/classifier/svm/SVMOcas.h
| | | A	src/shogun/features/LatentFeatures.cpp
| | | A	src/shogun/features/LatentFeatures.h
| | |    
| * | commit a7f18bb90648e3d02e641475a71942db79e72484
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Apr 6 12:38:58 2012 +0200
| | | 
| | |     Remove functional header from LatentLinearMachine.h
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit 091285be4c44dca5fa73020688cce8cd29c36cb8
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Apr 6 11:31:58 2012 +0200
| | | 
| | |     changing to argMax function
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit 68378b41163d7f15eda0f6503fc44e8745e56de2
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Mar 27 15:38:37 2012 +0200
| | | 
| | |     Fix typos in latent API and define default constructor
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit e3a2ac684df06fcfadc9162ec3dcaa82a7daa89e
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Mar 27 15:24:41 2012 +0200
| | | 
| | |     Add support for user defined latent var handling
| | | 
| | | M	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | M	src/shogun/classifier/svm/LatentLinearMachine.h
| | |    
| * | commit 88be1739096e3c7b4d59e3465f97b5370bc16605
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue Mar 27 14:44:33 2012 +0200
| | | 
| | |     Initial API for latent svm classifier
| | | 
| | | A	src/shogun/classifier/svm/LatentLinearMachine.cpp
| | | A	src/shogun/classifier/svm/LatentLinearMachine.h
| | | A	src/shogun/features/LatentLabels.cpp
| | | A	src/shogun/features/LatentLabels.h
| | |      
* | |   commit 3717f6576a8bbdbe2b09731494d2005c66311b0f
|\ \ \  Merge: 6af57ce 25dc5ad
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sat Jul 7 21:06:27 2012 +0400
| | | | 
| | | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |     
| * | | commit 25dc5ade28a0e69fd6b827d7fe1856c370cd9e37
| |/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Sat Jul 7 21:06:10 2012 +0400
| | |   
| | |       Updated feature block logit regression
| | |   
| | |   M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | |   M	src/shogun/lib/IndexBlockTree.cpp
| | |   M	src/shogun/lib/IndexBlockTree.h
| | |   M	src/shogun/lib/slep/slep_logistic.cpp
| | |   M	src/shogun/lib/slep/tree/altra.cpp
| | |   M	src/shogun/lib/slep/tree/general_altra.cpp
| | |      
* | |   commit 6af57ce70c5c1eeb636fb7b6bee7dbf3cced42da
|\ \ \  Merge: 9d82c0b 658757d
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sat Jul 7 21:04:10 2012 +0400
| | | | 
| | | |     Merge branch 'multiclass' of git://github.com/pluskid/shogun
| | | |     
| * | | commit 658757de4fecf0e5435f5e45deab88cbcf2a3eec
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jul 7 20:13:02 2012 +0800
| | | | 
| | | |     remove unnecessary type casts.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | |     
| * | | commit f3e3c703d12cfc79f6948cf48d1aedaa84c29ac8
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jul 7 19:50:21 2012 +0800
| | | | 
| | | |     better use of CTime
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | |     
| * | | commit 132f7bd9abc69738cc62455fcf550c30c01b2236
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jul 7 17:19:55 2012 +0800
| | | | 
| | | |     use shogun CTime to measure run-time.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | |     
| * | | commit d66fc4accdce3dbe989590570c07f7d8d252032e
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Thu Jul 5 11:28:31 2012 +0800
| | | | 
| | | |     measure running time of each round in ShareBoost.
| | | | 
| | | | M	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | |       
* | | |   commit 9d82c0b21e2d7cd6ff4624a8cb684e3f5ecd6c76
|\ \ \ \  Merge: 05e12d2 3711463
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Sat Jul 7 21:01:05 2012 +0400
| | | | | 
| | | | |     Merge branch 'master' of git://github.com/puffin444/shogun
| | | | |        
* | | | |   commit 05e12d24ac0c75120f8a19f86c5edd9d8f1b9198
|\ \ \ \ \  Merge: 564295a 377658c
| |_|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Sat Jul 7 07:02:10 2012 -0700
| | | | |   
| | | | |       Merge pull request #627 from karlnapf/master
| | | | |       
| | | | |       little more work on hsic_gamma
| | | | |      
| * | | | commit 377658c556b16359f7901e3bbdf89ce369da3773
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jul 7 14:58:30 2012 +0100
| | | | | 
| | | | |     added test for hsic_gamma
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_hsic.cpp
| | | | |      
| * | | | commit 7051cc84c50f7e88e4fb39ab5b07b74f2c736d25
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jul 7 14:53:16 2012 +0100
| | | | | 
| | | | |     removed copy paste error which caused a strange bug
| | | | | 
| | | | | M	src/shogun/statistics/IndependenceTestStatistic.h
| | | | |      
| * | | | commit 290672e263c6ee2f71a7a1c369330e55f4d67673
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jul 7 14:53:00 2012 +0100
| | | | | 
| | | | |     loads of fixes and debug messages
| | | | | 
| | | | | M	src/shogun/statistics/HSIC.cpp
| | | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit aa97093a161aecfbe08b9318b8ad3a8ccc363e00
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Sat Jul 7 14:52:31 2012 +0100
| | | |   
| | | |       added proper errors message if kernel has no features
| | | |   
| | | |   M	src/shogun/kernel/Kernel.cpp
| | | |     
| | | * commit 864211e1b28b4cb5cd91456772d2d20083a52346
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sat Jul 7 14:08:04 2012 +0000
| | | | 
| | | |     Added checking for empty features in InferenceMethod and ExactInferenceMethod.
| | | | 
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | |       
| | | *   commit 79cfd562aef157e6b1859c27e0b2b80bd68d8455
| | | |\  Merge: 3711463 564295a
| | |/ /  Author: puffin444 <walke434@msu.edu>
| |/| /   Date:   Fri Jul 6 22:55:31 2012 +0000
| |_|/    
|/| |         Merge remote branch 'upstream/master'
| | |      
* | |   commit 564295ab9c61f31d38587cd64212cb7587772925
|\ \ \  Merge: 312d90a 5fa61fc
| |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Fri Jul 6 13:06:08 2012 -0700
| | |   
| | |       Merge pull request #619 from uricamic/BM_SOL_EXAMPLE
| | |       
| | |       Inactive cutting plane removal for libbmrm
| | |    
| * | commit 5fa61fca2fdc2357437fff223c3b2a76b0597be4
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Wed Jul 4 12:05:14 2012 +0200
| | | 
| | |     DualLibQPBMSOSVM get_result method added + libbmrm update
| | | 
| | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | | M	src/shogun/structure/libbmrm.cpp
| | | M	src/shogun/structure/libbmrm.h
| | |    
| * | commit 56632ab4ae0b4b00ce41e8faad36374ffaf76687
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Tue Jul 3 21:46:52 2012 +0200
| | | 
| | |     libbmrm inactive cutting plane removal
| | | 
| | | M	src/shogun/structure/libbmrm.cpp
| | | M	src/shogun/structure/libbmrm.h
| | |    
| * | commit a90777ee041ed943619d1d10428c2b73236e40a3
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Tue Jul 3 21:45:58 2012 +0200
| | | 
| | |     DualLibQPBMSOSVM BM parameters added.
| | | 
| | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | |    
* | | commit 312d90a08e82a5f1e18f457381fb633edab8b8a7
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Jul 6 04:34:33 2012 +0400
| | | 
| | |     Updated IndexBlockTree constructor routine
| | | 
| | | M	src/shogun/lib/IndexBlockTree.cpp
| | |    
| | * commit 3711463a7e8d7ed6ed4fc037e1be5e536bdf5532
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Fri Jul 6 22:51:45 2012 +0000
| | | 
| | |     Fixed memory read errors.
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	src/shogun/base/Parameter.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | |      
| | *   commit 009faf212d641da1e684520fe9b863523b7d4ed6
| | |\  Merge: 41bc0ef 991fbc7
| |_|/  Author: puffin444 <walke434@msu.edu>
|/| |   Date:   Thu Jul 5 19:55:32 2012 +0000
| | |   
| | |       Merge remote branch 'upstream/master'
| | |    
* | | commit 991fbc74a44f89c7ae2e0ae08bc1e6cf9341455a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Fri Jul 6 03:41:26 2012 +0400
| | | 
| | |     Added custom index block tree creation by adjacency matrix
| | | 
| | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | M	src/shogun/lib/IndexBlockTree.cpp
| | | M	src/shogun/lib/IndexBlockTree.h
| | |    
* | | commit 463293d2198c9a5d510bb95f39c7c555af2b4b4d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 6 00:09:32 2012 +0200
| | | 
| | |     enably apply() w/o arguments to work with custom kernels
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
* | | commit 2cf3002942ef891c9993959a8861878654018fae
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Jul 5 21:48:45 2012 +0400
| | | 
| | |     Fixed FeatureBlockLogisticRegression solver and added Task and TaskTree
| | | 
| | | M	src/interfaces/modular/Transfer.i
| | | M	src/interfaces/modular/Transfer_includes.i
| | | M	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | M	src/shogun/lib/IndexBlock.h
| | | M	src/shogun/lib/IndexBlockTree.cpp
| | | M	src/shogun/lib/IndexBlockTree.h
| | | M	src/shogun/lib/slep/slep_logistic.cpp
| | | A	src/shogun/transfer/multitask/Task.cpp
| | | A	src/shogun/transfer/multitask/Task.h
| | | A	src/shogun/transfer/multitask/TaskTree.cpp
| | | A	src/shogun/transfer/multitask/TaskTree.h
| | |    
* | | commit b20223ce963c643fe7c47edb2fd6596db65d7fb8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 5 19:47:33 2012 +0200
| | | 
| | |     fix typo -> distribution
| | | 
| | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | |      
* | |   commit 7e9684929e8506d4f4fab6b7969c6edc8c7ce5eb
|\ \ \  Merge: 50f3d0e e913b8a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 10:26:08 2012 -0700
| | | | 
| | | |     Merge pull request #625 from karlnapf/master
| | | |     
| | | |     gamma approximation for HSIC
| | | |     
| * | | commit e913b8ade1cad5654fd1c77470891ba45381f501
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:25:23 2012 +0100
| | | | 
| | | |     whitespace corrections
| | | | 
| | | | M	src/shogun/statistics/HSIC.cpp
| | | |     
| * | | commit 1b7374b4ec518307aad3c837a7e752fc3a40b6a3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:22:27 2012 +0100
| | | | 
| | | |     whitespace correction
| | | | 
| | | | M	src/shogun/statistics/HSIC.cpp
| | | |     
| * | | commit 6d9ce338d5bf1be8bce90a5a12324086294789a8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:20:59 2012 +0100
| | | | 
| | | |     added gamma method for approximating null-distribution for HSIC
| | | | 
| | | | M	src/shogun/statistics/HSIC.cpp
| | | | M	src/shogun/statistics/HSIC.h
| | | | M	src/shogun/statistics/TestStatistic.h
| | | |     
| * | | commit 4832dd40d53836b660bbd266566028b701552c97
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:20:40 2012 +0100
| | | | 
| | | |     made a method protected which whouldnt be used from outside
| | | | 
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit 2bb5cdfb3043a3dcaa7c4378098850a42cf06db6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:20:25 2012 +0100
| | | | 
| | | |     sorting
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| * | | commit ff91003d710f377a8707f41c1ec4c52ef814c4b0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 5 18:18:55 2012 +0100
| | | | 
| | | |     error message updates
| | | | 
| | | | M	src/shogun/statistics/IndependenceTestStatistic.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | |       
* | | |   commit 50f3d0ed93148e5b957d8a1a14d8bfb014aa50b7
|\ \ \ \  Merge: 9c4e1d8 7418b63
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Thu Jul 5 08:19:12 2012 -0700
| | | |   
| | | |       Merge pull request #624 from karlnapf/master
| | | |       
| | | |       removed some more asserts
| | | |     
| * | | commit 7418b6368ba7e6bb369c108a2c96c07cd686da7d
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 5 16:17:47 2012 +0100
| | |   
| | |       removed forgotten asserts to prevent fails
| | |   
| | |   M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | |    
* | | commit 9c4e1d826fa8fb2b193f4ce344d6116c1b3a8b00
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Thu Jul 5 18:53:54 2012 +0400
| | | 
| | |     Added FeatureBlockLogisticRegression
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Classifier_includes.i
| | | A	src/shogun/classifier/FeatureBlockLogisticRegression.cpp
| | | A	src/shogun/classifier/FeatureBlockLogisticRegression.h
| | |      
* | |   commit eea1b33dde2297ed53d2c35ab4f46183bd761fd8
|\ \ \  Merge: a75088e 0408912
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Thu Jul 5 17:12:52 2012 +0400
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into slep
| | | |     
| | | |     Conflicts:
| | | |     	examples/undocumented/libshogun/Makefile
| | | |     	src/shogun/transfer/multitask/TaskTree.cpp
| | | |     
| * | | commit 0408912230ce263a7cd2be4bf0f2a2959395256a
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jul 4 22:37:24 2012 +0200
| | | | 
| | | |     use varargs for require macro and add kernel example
| | | | 
| | | | M	src/shogun/io/SGIO.h
| | | | M	src/shogun/kernel/Kernel.h
| | | |       
| * | |   commit 2c53078dc4dd687366c075f841ecfb995b775dd6
| |\ \ \  Merge: caa554c 5bcd69f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 4 09:25:47 2012 -0700
| | | | | 
| | | | |     Merge pull request #622 from karlnapf/master
| | | | |     
| | | | |     fixes for HSIC and first test/example
| | | | |      
| | * | | commit 5bcd69fc65a873359537b947e2dce0dd50313dae
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 4 17:23:18 2012 +0100
| | | | | 
| | | | |     added first test for hsic
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/statistics_hsic.cpp
| | | | |      
| | * | | commit 3798a5b258a15f8b3112875059030b629e0cb35c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 4 17:20:50 2012 +0100
| | | | | 
| | | | |     documentation
| | | | | 
| | | | | M	src/shogun/statistics/IndependenceTestStatistic.h
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | | |      
| | * | | commit 064d34d6ba658a46902b6ab998e20b541f21383f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 4 17:20:32 2012 +0100
| | | | | 
| | | | |     fixed errors in computing statistic
| | | | | 
| | | | | M	src/shogun/statistics/HSIC.cpp
| | | | |      
| | * | | commit 83308865655b90546e2d390783f4e84dd9b60934
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 4 17:20:14 2012 +0100
| | | |   
| | | |       added comments/documentation
| | | |   
| | | |   M	src/shogun/lib/SGMatrix.cpp
| | | |   M	src/shogun/lib/SGMatrix.h
| | | |       
| * | |   commit caa554c624a008ae2dd312926ca18aad68b46ff5
| |\ \ \  Merge: af1733e 0fc3472
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Wed Jul 4 08:29:31 2012 -0700
| | | |   
| | | |       Merge pull request #621 from karlnapf/master
| | | |       
| | | |       HSIC statistic, fixes and new interfaces
| | | |     
| | * | commit 0fc3472e28c50fb7bf6ff39ff3201b0840d5ce11
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 4 16:25:03 2012 +0100
| | | | 
| | | |     corrected typos which made modular compile fail
| | | | 
| | | | M	src/interfaces/modular/Statistics_includes.i
| | | |     
| | * | commit acadf5e69e75bc55f8ee00033e464f32b8557ec2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 4 10:32:22 2012 +0100
| | | | 
| | | |     corrected an interface name
| | | | 
| | | | M	src/interfaces/modular/Statistics.i
| | | |     
| | * | commit 1c03079ee29cabeb188a31c6eaae98ab97743894
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 22:09:55 2012 +0100
| | | | 
| | | |     added forgotten heritance visibility
| | | | 
| | | | M	src/shogun/statistics/HSIC.h
| | | |     
| | * | commit 62d98e60625a08926792d459cf223c99fc52f037
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 22:05:59 2012 +0100
| | | | 
| | | |     added modular interfaces for new classes
| | | | 
| | | | M	src/interfaces/modular/Statistics.i
| | | | M	src/interfaces/modular/Statistics_includes.i
| | | |     
| | * | commit 0bd8eb2dbdaa3969de4b7e571d3e2279343a0666
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 3 22:03:26 2012 +0100
| | |   
| | |       first implementation of biased HSIC
| | |   
| | |   M	src/shogun/statistics/HSIC.cpp
| | |   M	src/shogun/statistics/HSIC.h
| | |    
| * | commit af1733e56fe3571b3cadfb82cf9abf046793ab27
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 4 10:32:34 2012 +0200
| | | 
| | |     add REQUIRE macro and an example how to use it in Kernel.h
| | | 
| | | M	src/shogun/io/SGIO.h
| | |      
| * |   commit c5f9390f936853985b712c14ee71f417b21b98fd
| |\ \  Merge: 1689ea9 e22c517
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Wed Jul 4 03:18:05 2012 +0400
| | | | 
| | | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |       
| * | |   commit 1689ea9f7fa101d4b14251ca2fea2cb197c1cf06
| |\ \ \  Merge: 56473ad 7447322
| | | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | | Date:   Wed Jul 4 01:59:09 2012 +0400
| | | | | 
| | | | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | | |      
* | | | | commit a75088e961e4e1cd8e6515a1653b0f852da6cfca
| |_|/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | |   Date:   Thu Jul 5 17:03:15 2012 +0400
| | | |   
| | | |       Moved task structures out of multitask submodule
| | | |   
| | | |   M	examples/undocumented/libshogun/Makefile
| | | |   M	examples/undocumented/libshogun/transfer_multitasklogisticregression.cpp
| | | |   M	examples/undocumented/libshogun/transfer_multitasklsregression.cpp
| | | |   M	examples/undocumented/python_modular/transfer_multitask_group_regression.py
| | | |   M	src/interfaces/modular/Library.i
| | | |   M	src/interfaces/modular/Library_includes.i
| | | |   M	src/interfaces/modular/Transfer.i
| | | |   M	src/interfaces/modular/Transfer_includes.i
| | | |   A	src/shogun/lib/IndexBlock.cpp
| | | |   A	src/shogun/lib/IndexBlock.h
| | | |   A	src/shogun/lib/IndexBlockGroup.cpp
| | | |   A	src/shogun/lib/IndexBlockGroup.h
| | | |   A	src/shogun/lib/IndexBlockRelation.cpp
| | | |   A	src/shogun/lib/IndexBlockRelation.h
| | | |   A	src/shogun/lib/IndexBlockTree.cpp
| | | |   A	src/shogun/lib/IndexBlockTree.h
| | | |   M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | |   M	src/shogun/transfer/multitask/MultitaskLSRegression.h
| | | |   M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | |   M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | | |   D	src/shogun/transfer/multitask/Task.cpp
| | | |   D	src/shogun/transfer/multitask/Task.h
| | | |   D	src/shogun/transfer/multitask/TaskGroup.cpp
| | | |   D	src/shogun/transfer/multitask/TaskGroup.h
| | | |   D	src/shogun/transfer/multitask/TaskRelation.cpp
| | | |   D	src/shogun/transfer/multitask/TaskRelation.h
| | | |   D	src/shogun/transfer/multitask/TaskTree.cpp
| | | |   D	src/shogun/transfer/multitask/TaskTree.h
| | | |     
* | | | commit e22c517b46406e6d662af68c5ff54e062fdaf547
| |/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| |   Date:   Wed Jul 4 03:17:14 2012 +0400
| | |   
| | |       Added feature tree support for logistic regression
| | |   
| | |   M	src/shogun/lib/slep/slep_logistic.cpp
| | |   M	src/shogun/lib/slep/slep_options.h
| | |    
* | | commit 7447322ffd3da18a7cef6fd64a0767518166c15c
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Jul 4 01:58:40 2012 +0400
| | | 
| | |     Further generalization of SLEP based logistic regression solver
| | | 
| | | M	src/shogun/lib/slep/q1/eppVector.h
| | | A	src/shogun/lib/slep/slep_logistic.cpp
| | | A	src/shogun/lib/slep/slep_logistic.h
| | | D	src/shogun/lib/slep/slep_mt_lr.cpp
| | | D	src/shogun/lib/slep/slep_mt_lr.h
| | | M	src/shogun/lib/slep/slep_options.h
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | |    
| | * commit 41bc0efc7cd01c385232bb45acca8a8fcb571799
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Thu Jul 5 19:54:52 2012 +0000
| | | 
| | |     Updated hashing function. Added interface to the Murmur3 hashing
| | |     algorithm.
| | | 
| | | M	examples/undocumented/libshogun/library_hash.cpp
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | | M	src/interfaces/modular/Evaluation.i
| | | M	src/interfaces/modular/ModelSelection.i
| | | M	src/shogun/base/Parameter.cpp
| | | M	src/shogun/base/Parameter.h
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/features/HashedWDFeatures.cpp
| | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | M	src/shogun/lib/Hash.cpp
| | | M	src/shogun/lib/Hash.h
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/lib/Set.h
| | | A	src/shogun/lib/external/PMurHash.c
| | | A	src/shogun/lib/external/PMurHash.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | |      
| | *   commit 1e4e7317838682cc0615212a71ea4133a11a87cf
| | |\  Merge: 06285a8 56473ad
| | |/  Author: puffin444 <walke434@msu.edu>
| |/|   Date:   Tue Jul 3 17:00:21 2012 +0000
| | |   
| | |       Merge remote branch 'upstream/master'
| | |       
| | |       Conflicts:
| | |       	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | |    
| * | commit 56473ad999ffdfcc6838ad76772775d01d0d4cce
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Wed Jul 4 00:53:13 2012 +0400
| | | 
| | |     Disabled KLTSA python example
| | | 
| | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | |      
| * |   commit 735d134603a0690ffe515e6e8fc5e76d7d7a0525
| |\ \  Merge: e8aa169 cf2d2cf
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 13:45:23 2012 -0700
| | | | 
| | | |     Merge pull request #620 from karlnapf/master
| | | |     
| | | |     first framework for independence testing
| | | |     
| | * | commit cf2d2cf2d7088558e60abd6404332fa0ef08b3f8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:38:57 2012 +0100
| | | | 
| | | |     Revert "Revert "-re-factoring as  preparation for independence tests""
| | | |     
| | | |     This reverts commit 729a96ec2040eeeeea034d74ea0c5237e4ea0b29.
| | | | 
| | | | A	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | | | A	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | A	src/shogun/statistics/TestStatistic.cpp
| | | | M	src/shogun/statistics/TestStatistic.h
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | |     
| | * | commit 128cba0e2b1928ba841d559d34fe82dca6a43523
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:38:42 2012 +0100
| | | | 
| | | |     Revert "Revert "temp commit""
| | | |     
| | | |     This reverts commit 679e73b11171c5b2535ba801c8769fb7b9526b3f.
| | | | 
| | | | A	src/shogun/statistics/HSIC.cpp
| | | | A	src/shogun/statistics/HSIC.h
| | | | A	src/shogun/statistics/IndependenceTestStatistic.cpp
| | | | A	src/shogun/statistics/IndependenceTestStatistic.h
| | | |     
| | * | commit 82864a675ec5503f13f1c2868104d21d00d77da5
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:38:00 2012 +0100
| | | | 
| | | |     Revert "temp commit"
| | | |     
| | | |     This reverts commit 27c7551c95ab35dc1a036b160873e52e24ac34ec.
| | | | 
| | | | D	src/shogun/statistics/HSIC.cpp
| | | | D	src/shogun/statistics/HSIC.h
| | | | D	src/shogun/statistics/IndependenceTestStatistic.cpp
| | | | D	src/shogun/statistics/IndependenceTestStatistic.h
| | | |     
| | * | commit 0b2e12f7e9379c12459d559b0a173737e80caaa6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:37:14 2012 +0100
| | | | 
| | | |     Revert "-re-factoring as  preparation for independence tests"
| | | |     
| | | |     This reverts commit f95b48d6b3ca2b6659b546d276bdcc071604c777.
| | | | 
| | | | D	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | | | D	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | D	src/shogun/statistics/TestStatistic.cpp
| | | | M	src/shogun/statistics/TestStatistic.h
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | |     
| | * | commit b4b42a4d2cbb8147009b032fb45a7756c934af12
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:37:09 2012 +0100
| | | | 
| | | |     temp commit
| | | | 
| | | | A	src/shogun/statistics/HSIC.cpp
| | | | A	src/shogun/statistics/HSIC.h
| | | | A	src/shogun/statistics/IndependenceTestStatistic.cpp
| | | | A	src/shogun/statistics/IndependenceTestStatistic.h
| | | |     
| | * | commit 73af297a82b5508b8202dd093f6a6cb8c3a2bb47
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 21:35:43 2012 +0100
| | | | 
| | | |     fixes an assertion error
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | |     
| | * | commit d49f2a0e00c0cf672bc56c867f4e3a93aac1259c
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 3 21:35:30 2012 +0100
| | |   
| | |       -re-factoring as  preparation for independence tests
| | |       -updated documentation
| | |   
| | |   A	src/shogun/statistics/KernelIndependenceTestStatistic.cpp
| | |   A	src/shogun/statistics/KernelIndependenceTestStatistic.h
| | |   M	src/shogun/statistics/LinearTimeMMD.cpp
| | |   M	src/shogun/statistics/LinearTimeMMD.h
| | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | |   A	src/shogun/statistics/TestStatistic.cpp
| | |   M	src/shogun/statistics/TestStatistic.h
| | |   M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | |   M	src/shogun/statistics/TwoSampleTestStatistic.h
| | |    
| * | commit e8aa1694523325d6a076c3bdc7bce02497ea79c8
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 3 22:26:43 2012 +0400
| | | 
| | |     Attempt to make KLTSA example more stable
| | | 
| | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | |      
| * |   commit 343650e088e0b83affd017ac38c56086c811ea36
| |\ \  Merge: 9bf4f00 cf13270
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 10:57:32 2012 -0700
| | | | 
| | | |     Merge pull request #618 from karlnapf/master
| | | |     
| | | |     make examples run faster
| | | |     
| | * | commit cf13270231c9521a83d3704417e1eb392bf4fa58
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 18:56:12 2012 +0100
| | | | 
| | | |     speed things up
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |     
| | * | commit 665be2b9c999231d2a45e5436a5d4175c9b548c2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 3 18:50:40 2012 +0100
| | | | 
| | | |     speed up examples
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit 9bf4f00df5d35af12bb52cec0ab25af2eb7ca271
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 3 19:36:32 2012 +0200
| | |   
| | |       add tests target to interfaces too
| | |   
| | |   M	src/Makefile.template
| | |    
| * | commit a73124b9c9cf02f0893b8405d81b29330aa94eec
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 3 19:19:25 2012 +0200
| | | 
| | |     examples is a dependency for install
| | | 
| | | M	src/Makefile
| | |    
| * | commit 5501c6b1eab769ef2e7bb823c7a1b09620fdb857
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 3 18:29:13 2012 +0200
| | | 
| | |     add shogun/Makefile to partdeps
| | | 
| | | M	src/Makefile
| | |    
| * | commit dbda54fd7cf3247fe52bd84f642755eb268b8b2a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 3 18:16:46 2012 +0200
| | | 
| | |     add partdeps target to ease buildbot scripts
| | | 
| | | M	src/Makefile
| | |    
| * | commit 7831cbd27bad9ee37e97a873458beac5d94ece7f
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 3 15:31:02 2012 +0400
| | | 
| | |     Temporary commented out GP python example
| | | 
| | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | |    
| * | commit 12d64bbb3254bb5268ec36b367a04ded0df7e0f6
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 3 14:41:05 2012 +0400
| | | 
| | |     Fixed GP python example
| | | 
| | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | |    
| * | commit cbde09035719b5c89f946457a591cfcfe35d8038
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 3 14:38:29 2012 +0400
| | | 
| | |     Update master
| | | 
| | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | |    
| * | commit 239e0c4cbe24d0d6ab5cded31e98deb971dda38d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 3 09:38:49 2012 +0200
| | | 
| | |     fail nicely when mosek is not available in so mc example
| | | 
| | | M	examples/undocumented/python_modular/so_multiclass.py
| | |    
| * | commit 06d9542c240db07d19ca47ce609c829e53c53a68
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jul 3 11:31:40 2012 +0400
| | | 
| | |     Fixed errors related to failing python examples
| | | 
| | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | | M	src/shogun/features/SparseFeatures.cpp
| | | M	src/shogun/io/BinaryFile.cpp
| | |    
| * | commit d01d58746c39c6c8643b1dc5fc209b0904a72007
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 3 08:51:52 2012 +0200
| | | 
| | |     fix various python modular examples
| | | 
| | | D	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | M	src/Makefile.template
| | |      
| * |   commit d4cb0525d708aa3cb0eaf3d89e367b36103c9d90
| |\ \  Merge: 966c8d3 00d8d13
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 2 16:21:01 2012 -0700
| | | | 
| | | |     Merge pull request #617 from cwidmer/master
| | | |     
| | | |     faster way of computing dual objective
| | | |     
| | * | commit 00d8d1355fefa77c469e73ecbd56a02f91a53bd6
| | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | Date:   Tue Jun 26 17:55:52 2012 +0200
| | | | 
| | | |     speed-up of computation of dual objective using primal variables (Vs)
| | | | 
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | |     
| * | | commit 966c8d375f5bc0874dd7622267288d44fb812f98
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 03:16:13 2012 +0400
| | | | 
| | | |     Another attempt to remove space backslash define warning
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | |       
| * | |   commit 6e1e928a0be58e88d2088d6e11f483d62a30339b
| |\ \ \  Merge: 17d476f 725d6ad
| |/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | |   Date:   Tue Jul 3 03:00:07 2012 +0400
| | | |   
| | | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |     
* | | | commit 725d6ada7bbdca38147a27317aa73719794214e3
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 02:59:19 2012 +0400
| | | | 
| | | |     Merged tree and group guided least squares SLEP solvers
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | D	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | |     
* | | | commit 0e836c4983e98b87715170dbe5e2a942a0b100ce
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 02:29:34 2012 +0400
| | | | 
| | | |     Merged multitask tree and group regression into one solver
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | D	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | | M	src/shogun/lib/slep/tree/altra.cpp
| | | | M	src/shogun/lib/slep/tree/altra.h
| | | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | | | M	src/shogun/lib/slep/tree/general_altra.h
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | |     
| * | | commit 17d476f1f1922bc2b714bb35393d73e5b7068bfa
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 02:59:19 2012 +0400
| | | | 
| | | |     Merged tree and group guided least squares SLEP solvers
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | D	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | |     
| * | | commit 3a4748d84e5b26e975007110eb4e6d2484043e2b
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 02:29:34 2012 +0400
| | | | 
| | | |     Merged multitask tree and group regression into one solver
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | D	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | | M	src/shogun/lib/slep/tree/altra.cpp
| | | | M	src/shogun/lib/slep/tree/altra.h
| | | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | | | M	src/shogun/lib/slep/tree/general_altra.h
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | |     
| * | | commit dc160653bd098907f0ec712193df07eb016c8421
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 3 00:52:19 2012 +0200
| | | | 
| | | |     add forgotten SAVERDS=$4
| | | | 
| | | | M	src/.r-install.sh
| | | |     
| * | | commit 39223926b624563e978e36455fc4d2350bca0075
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 3 00:42:43 2012 +0200
| | | | 
| | | |     Revert "Merged multitask tree and group regression into one solver"
| | | |     
| | | |     This reverts commit c2d61f9798b197eb383483d912df59dbd9278f54.
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | A	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | | M	src/shogun/lib/slep/tree/altra.cpp
| | | | M	src/shogun/lib/slep/tree/altra.h
| | | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | | | M	src/shogun/lib/slep/tree/general_altra.h
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | |     
| * | | commit 3dd2b747d0ea71031c93ec43e3ee81b66e2559d6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 3 00:33:03 2012 +0200
| | | | 
| | | |     really only require R 2.10
| | | | 
| | | | M	src/.r-install.sh
| | | | M	src/configure
| | | |     
| * | | commit c2d61f9798b197eb383483d912df59dbd9278f54
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 02:29:34 2012 +0400
| | | | 
| | | |     Merged multitask tree and group regression into one solver
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | D	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | | M	src/shogun/lib/slep/tree/altra.cpp
| | | | M	src/shogun/lib/slep/tree/altra.h
| | | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | | | M	src/shogun/lib/slep/tree/general_altra.h
| | | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | |     
| * | | commit df76374df01622cb077e27074b38eaa2d4a4d784
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 3 00:13:45 2012 +0200
| | | | 
| | | |     support R 2.10 and greater again
| | | | 
| | | | M	src/.r-install.sh
| | | | M	src/Makefile.template
| | | | M	src/configure
| | | |     
| * | | commit 053bdde484b5f277de9acc7482931ee2fecb25e6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 2 23:31:59 2012 +0200
| | | | 
| | | |     destroy lock on free and fix race condition
| | | | 
| | | | M	src/shogun/lib/SGReferencedData.h
| | | |     
| * | | commit 8bc0fdfbf8a21ffd83a772043a3bd187f31223ca
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Tue Jul 3 00:40:18 2012 +0400
| | | | 
| | | |     Updated references thread-safe handling
| | | | 
| | | | M	src/shogun/lib/SGReferencedData.h
| | | |     
| * | | commit f1a01b70ec1519a0d586f5588d55b9927df84fc7
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 2 23:47:31 2012 +0400
| | | | 
| | | |     Made refcounting in SGReferencedData thread-safe
| | | | 
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | M	src/shogun/features/SparseFeatures.cpp
| | | | M	src/shogun/lib/SGReferencedData.h
| | | |     
| * | | commit cf9d5deaa537aad24b403053e88aede97d6fad13
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 2 20:26:24 2012 +0200
| | | | 
| | | |     Revert "breaking configure (buildbot test)"
| | | |     
| | | |     This reverts commit ebfa8bf667745650d24afd845ccb239d8d43ffd6 and all
| | | |     back to good again.
| | | | 
| | | | M	src/configure
| | | |     
| * | | commit ebfa8bf667745650d24afd845ccb239d8d43ffd6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 2 20:20:55 2012 +0200
| | | | 
| | | |     breaking configure (buildbot test)
| | | | 
| | | | M	src/configure
| | | |       
| * | |   commit f72cc6d6bb058427d603f016ab9898c2ecf66f07
| |\ \ \  Merge: 8fb2bb1 fea2a1e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 2 09:40:52 2012 -0700
| | | | | 
| | | | |     Merge pull request #616 from karlnapf/master
| | | | |     
| | | | |     updated failing examples and added them again
| | | | |      
| | * | | commit fea2a1e8af7bc6d513d3550705ba5bfdc184ae11
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 2 17:39:06 2012 +0100
| | | | | 
| | | | |     added statistics examples again (hopefully work now)
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | |      
| | * | | commit e5b0dbeead7748f512a081d326cbb7e388c2b774
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jul 2 17:38:42 2012 +0100
| | | |   
| | | |       removed some of the asserts which might be too strong
| | | |   
| | | |   M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | |   M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |     
| * | | commit 8fb2bb18892999a00adbd5fafd61da52f075eb0c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 2 13:27:15 2012 +0200
| | | | 
| | | |     fix typo in configure HAVE_ARPACK -> HAVE_EIGEN3
| | | | 
| | | | M	src/configure
| | | |       
| * | |   commit 84b7803291d1d4119d0c5a22e0aa57c1954359ec
| |\ \ \  Merge: f482b5d 7765f01
| |/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| | |   Date:   Mon Jul 2 13:39:36 2012 +0400
| | | |   
| | | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |     
* | | | commit 7765f013712cd780e27bd77caadfda1c3de6cf68
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 2 03:48:18 2012 +0400
| | | | 
| | | |     Fixed tree guided multitask logistic regression
| | | | 
| | | | M	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | |     
* | | | commit 82caba42bbe913b23b2720eca2917f3fd76dd7f7
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 2 03:30:16 2012 +0400
| | | | 
| | | |     Fixes for multitask tree guided least squares
| | | | 
| | | | M	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | |     
| * | | commit f482b5d18242887fdcf60fd17551a844eba50745
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Mon Jul 2 01:19:26 2012 +0400
| | | | 
| | | |     Temporary commented out kernel_lik.m example
| | | | 
| | | | M	examples/undocumented/matlab_and_octave/kernel_lik.m
| | | |     
| * | | commit 6637f20161e276fc31c6b4a24caa4d6378e58b76
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 22:06:31 2012 +0400
| | | | 
| | | |     Fixed sparse matrix handling in octave interfaces
| | | | 
| | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | M	src/interfaces/octave_static/OctaveInterface.cpp
| | | |     
| * | | commit 7ef9212ea2db5b5ffe9345f254bcd85b6a8d5dfb
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 16:15:07 2012 +0400
| | | | 
| | | |     Disabled statistics tests and updated MT LR test
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | M	examples/undocumented/libshogun/transfer_multitasklogisticregression.cpp
| | | |     
| * | | commit 6857283f3809b3c97bdaaa03341978cfa0568769
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 16:10:04 2012 +0400
| | | | 
| | | |     Fixed things causing compilation warnings
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | | M	src/shogun/transfer/multitask/TaskTree.cpp
| | | |     
| * | | commit 88ff2862994791eff1895fa633fc98631f14d01c
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 16:02:39 2012 +0400
| | | | 
| | | |     Updated headers due to liblinear migration
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/regression/svr/LibLinearRegression.cpp
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | |     
| | | * commit 06285a899ac103df166be88d780a3e1def412494
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jul 3 16:52:34 2012 +0000
| | | | 
| | | |     Cleaned up parameter hashing code. Updated modular interface to work with
| | | |     GPs.
| | | | 
| | | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | | | M	src/interfaces/modular/Evaluation.i
| | | | M	src/interfaces/modular/Evaluation_includes.i
| | | | M	src/interfaces/modular/ModelSelection.i
| | | | M	src/interfaces/modular/ModelSelection_includes.i
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/shogun/base/Parameter.cpp
| | | | M	src/shogun/base/Parameter.h
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | M	src/shogun/regression/gp/ZeroMean.h
| | | |       
| | | *   commit 2b6ea8ffa360a14902736d73f7d607562a082d48
| | | |\  Merge: 323dd61 c586669
| | |_|/  Author: puffin444 <walke434@msu.edu>
| |/| |   Date:   Sun Jul 1 01:38:42 2012 +0000
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| * | | commit c586669aefcc6a9c2f4cb60ca119ef90cca840f2
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 08:38:24 2012 +0400
| | | | 
| | | |     Moved liblinear to optimization
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | | D	src/shogun/lib/external/shogun_liblinear.cpp
| | | | D	src/shogun/lib/external/shogun_liblinear.h
| | | | D	src/shogun/lib/external/tron.cpp
| | | | D	src/shogun/lib/external/tron.h
| | | | M	src/shogun/multiclass/MulticlassLibLinear.h
| | | | A	src/shogun/optimization/liblinear/shogun_liblinear.cpp
| | | | A	src/shogun/optimization/liblinear/shogun_liblinear.h
| | | | A	src/shogun/optimization/liblinear/tron.cpp
| | | | A	src/shogun/optimization/liblinear/tron.h
| | | | M	src/shogun/regression/svr/LibLinearRegression.h
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | |     
| * | | commit 102ecb0d0114b41af4ab3c31b62cd753968f562d
|/ / /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Sun Jul 1 08:29:43 2012 +0400
| | |   
| | |       Added PegasosSVM
| | |   
| | |   M	src/interfaces/modular/Classifier.i
| | |   M	src/interfaces/modular/Classifier_includes.i
| | |   A	src/shogun/classifier/svm/PegasosSVM.cpp
| | |   A	src/shogun/classifier/svm/PegasosSVM.h
| | |   A	src/shogun/optimization/pegasos/pegasos_optimize.cpp
| | |   A	src/shogun/optimization/pegasos/pegasos_optimize.h
| | |    
* | | commit df424fafdfe3acc9b515dc512d0a884e9329e839
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 1 06:55:08 2012 +0400
| | | 
| | |     Added tree regularized logistic regression and fixed least squares regressors support
| | | 
| | | A	examples/undocumented/libshogun/transfer_multitasklogisticregression.cpp
| | | A	src/shogun/lib/slep/slep_tree_mt_lr.cpp
| | | A	src/shogun/lib/slep/slep_tree_mt_lr.h
| | | M	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | M	src/shogun/transfer/multitask/Task.cpp
| | | M	src/shogun/transfer/multitask/Task.h
| | | M	src/shogun/transfer/multitask/TaskTree.cpp
| | | M	src/shogun/transfer/multitask/TaskTree.h
| | |    
* | | commit 5643f9a15feddc159fa7c3c951b4a0da8af327ad
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Sun Jul 1 04:54:16 2012 +0400
| | | 
| | |     Added a few doc lines for task group
| | | 
| | | M	src/shogun/transfer/multitask/TaskGroup.h
| | |      
* | |   commit f408929b1fabbcf97b67a4a5af45d1722afe4c16
|\ \ \  Merge: c86b318 6375108
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 04:32:03 2012 +0400
| | | | 
| | | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |     
| * | | commit 6375108ffc9e4a6488784d5ca2ea0c0d3a3ef6f7
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 04:31:34 2012 +0400
| | | | 
| | | |     Fixed least squares multitask L1/Lq regressor and made it fit with SLEPs analogous method
| | | | 
| | | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | | M	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | |     
* | | | commit c86b318d47997a327fb1831f0d6a5382b2c04ec7
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 03:31:01 2012 +0400
| | | | 
| | | |     Removed warning-causing empty backslashed line in AsciiFile
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | |     
* | | | commit 4bc90016d9b2ffd1e30f3729e8a8cf7278c5e3cb
| | | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | | Date:   Sun Jul 1 03:21:05 2012 +0400
| | | | 
| | | |     Added Eigen3 configure check
| | | | 
| | | | M	src/configure
| | | |     
* | | | commit a10eab1b5c6dfdab04183c5edb11cab19f78f57b
| |/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|/| |   Date:   Fri Jun 29 22:44:23 2012 +0400
| | |   
| | |       Fixed sparse matrix handling in static
| | |   
| | |   M	src/shogun/features/SparseFeatures.cpp
| | |   M	src/shogun/io/AsciiFile.cpp
| | |   M	src/shogun/ui/SGInterface.cpp
| | |      
* | |   commit 9962e1d85b0afdba4fb39aca92fcec02891e71a1
|\ \ \  Merge: e9b94ce 42dd334
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 11:06:53 2012 -0700
| | | | 
| | | |     Merge pull request #614 from karlnapf/master
| | | |     
| | | |     added check for lapack in python example
| | | |     
| * | | commit 42dd334825911519ff616d9c0df242ef6d57de7e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 19:06:11 2012 +0100
| | | | 
| | | |     added check for method availability to avoid errors when lapack isnt installed
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |       
* | | |   commit e9b94cee60f4844762ab6a1f1e098da898e621e1
|\ \ \ \  Merge: db38a5d 1de3fce
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jun 29 10:58:57 2012 -0700
| | | |   
| | | |       Merge pull request #613 from karlnapf/master
| | | |       
| | | |       a new python example and some fixes
| | | |     
| * | | commit 1de3fce143f152f578264596d258c49a69d45aa6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:57:46 2012 +0100
| | | | 
| | | |     initial commit. Shows all current methods for quadratic time mmd
| | | | 
| | | | A	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |     
| * | | commit 1d80f5a59c40acd90c5ee2c91bf29f6141d8cfee
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:57:29 2012 +0100
| | | | 
| | | |     added more stuff
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | |     
| * | | commit 40fb711200985a1abe9f2d716aa42c78c1388e3b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:57:15 2012 +0100
| | | | 
| | | |     comment update
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | |     
| * | | commit 9b4ed8b23a5fb3dcb12e7e44db04caa3adb9e4e7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:57:06 2012 +0100
| | | | 
| | | |     documentation updates
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit 4d5654900b9b6f58d15959e46e71ef54494df345
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jun 29 18:39:08 2012 +0100
| | |   
| | |       added a little comment to avoid confusion
| | |   
| | |   M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | |      
* | |   commit db38a5db2f99a142e37e6a608232585677cbb7e8
|\ \ \  Merge: 5e9cd50 166b510
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 10:28:13 2012 -0700
| | | | 
| | | |     Merge pull request #612 from karlnapf/master
| | | |     
| | | |     another example fix
| | | |     
| * | | commit 166b51017049375784760c4e84dd4126abba4602
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:27:36 2012 +0100
| | | | 
| | | |     Wrong file.
| | | |     Revert "corrected compile error"
| | | |     
| | | |     This reverts commit 11ba3d76efe83fec60aba65669c38727af9946ca.
| | | | 
| | | | D	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |     
| * | | commit 263031f48eb69f485b245e6fb642d3ecd51a17b0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:27:34 2012 +0100
| | | | 
| | | |     another example fix
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | |     
| * | | commit 11ba3d76efe83fec60aba65669c38727af9946ca
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:26:24 2012 +0100
| | | | 
| | | |     corrected compile error
| | | | 
| | | | A	examples/undocumented/python_modular/statistics_quadratic_time_mmd.py
| | | |       
* | | |   commit 5e9cd5092a39e0b27ab8e3ae8a812120fd44738f
|\ \ \ \  Merge: ccf6742 029a375
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jun 29 10:13:45 2012 -0700
| | | |   
| | | |       Merge pull request #611 from karlnapf/master
| | | |       
| | | |       fix compile error in test
| | | |     
| * | | commit 029a37514b1c6f30ac13ddb48614bf238549fdac
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:11:38 2012 +0100
| | | | 
| | | |     minor fixes
| | | | 
| | | | M	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | |     
| * | | commit c54c12466db99e626d7fef989ab17bf23ad4ae0a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:11:30 2012 +0100
| | | | 
| | | |     added compute threshold dummy
| | | | 
| | | | M	src/shogun/statistics/TestStatistic.h
| | | |     
| * | | commit 11c6ed7e906bfdae5fd1ac9050c8a9ebf30e046f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 18:11:17 2012 +0100
| | | | 
| | | |     corrected compile error
| | | | 
| | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |       
* | | |   commit ccf674272eb272b957e30728a492d60a195c8d82
|\ \ \ \  Merge: 047feef 680f6ca
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jun 29 09:36:12 2012 -0700
| | | |   
| | | |       Merge pull request #610 from karlnapf/master
| | | |       
| | | |       fixes, documentation and example
| | | |     
| * | | commit 680f6ca2d2f2f04df91b3bd51b361a92783e716c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 17:31:44 2012 +0100
| | | | 
| | | |     removed python_modular/tools
| | | | 
| | | | M	.gitignore
| | | |     
| * | | commit b1422b84f02176fdf66e264ff821cee8416312af
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 17:28:35 2012 +0100
| | | | 
| | | |     added little helper for two-sample test examples
| | | | 
| | | | A	examples/undocumented/python_modular/tools/two_distributions_data.py
| | | |     
| * | | commit 116f0713a2e8e58052cc578158582f4a39a09efc
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 17:25:25 2012 +0100
| | | | 
| | | |     python example for linear time mmd
| | | | 
| | | | A	examples/undocumented/python_modular/statistics_linear_time_mmd.py
| | | |     
| * | | commit 933f21d21931c760d26a8262dcf123b5c4a79180
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 17:24:50 2012 +0100
| | | | 
| | | |     added comments, in particular that for linear time mmd, training and test
| | | |     set have to be different
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit d8be96fdeb5e4a989b113c50cd7ec1ef77bf71ba
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 17:00:51 2012 +0100
| | | | 
| | | |     removed class StatisticalTest since this might lead to wrong usage of tests
| | | | 
| | | | M	src/interfaces/modular/Statistics.i
| | | | M	src/interfaces/modular/Statistics_includes.i
| | | | D	src/shogun/statistics/StatisticalTest.cpp
| | | | D	src/shogun/statistics/StatisticalTest.h
| | | |     
| * | | commit e3ec84aeeea06cb0fa88af91a63d8469b29d712a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jun 29 16:31:41 2012 +0100
| | | | 
| | | |     -added debug messages
| | | |     -renamed p_value_method to null_approximation_method
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | |     
| * | | commit 0a967ba3cfa6e48e18b1c9166cf46fce5880caa5
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jun 29 15:55:59 2012 +0100
| | |   
| | |       made create_merged_copy virtual
| | |   
| | |   M	src/shogun/features/Features.h
| | |    
| | * commit 323dd6117f8907b0c3a1c2ecdbe1478fa7fdf1d2
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Sun Jul 1 01:38:04 2012 +0000
| | | 
| | |     Finalized matrix storage schemes for Gaussian Process Regression.
| | |     Updated Example.
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	src/shogun/base/Parameter.cpp
| | | M	src/shogun/base/Parameter.h
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.h
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | |    
| | * commit 93caa1cd49b29c1d9e027f079d64455e3bdb28fd
| |/  Author: puffin444 <walke434@msu.edu>
|/|   Date:   Sat Jun 30 17:41:13 2012 +0000
| |   
| |       Added new inteface for Gaussian Process apply_regression. Added md5 sum
| |       to check for differences in model selection parameters. Made computatation
| |       in ExactInferenceMethod more efficient.
| |   
| |   M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| |   M	src/shogun/base/Parameter.cpp
| |   M	src/shogun/base/Parameter.h
| |   M	src/shogun/base/SGObject.cpp
| |   M	src/shogun/base/SGObject.h
| |   M	src/shogun/modelselection/GradientModelSelection.cpp
| |   M	src/shogun/regression/GaussianProcessRegression.cpp
| |   M	src/shogun/regression/GaussianProcessRegression.h
| |   M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   M	src/shogun/regression/gp/ExactInferenceMethod.h
| |   M	src/shogun/regression/gp/InferenceMethod.h
| |     
* |   commit 047feef991e9640546217e02210a4af80383cd02
|\ \  Merge: 2660a96 c1e2e27
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jun 29 03:18:13 2012 -0700
| | | 
| | |     Merge pull request #609 from puffin444/master
| | |     
| | |     Added Kernel Scaling to GPs. Fixed some warnings/math errors.
| | |    
| * | commit c1e2e276e2812138ec97a724255bbe801eed792c
| |/  Author: puffin444 <walke434@msu.edu>
| |   Date:   Thu Jun 28 15:48:06 2012 +0000
| |   
| |       Added Kernel Scaling in CInferenceMethod. Fixed some warnings. Fixed
| |       a subtle math error in the calculation of the likelihood gradient.
| |   
| |   M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| |   M	src/shogun/evaluation/DifferentiableFunction.h
| |   M	src/shogun/evaluation/GradientResult.h
| |   M	src/shogun/modelselection/GradientModelSelection.cpp
| |   M	src/shogun/modelselection/ParameterCombination.cpp
| |   M	src/shogun/modelselection/ParameterCombination.h
| |   M	src/shogun/regression/GaussianProcessRegression.cpp
| |   M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   M	src/shogun/regression/gp/ExactInferenceMethod.h
| |   M	src/shogun/regression/gp/InferenceMethod.cpp
| |   M	src/shogun/regression/gp/InferenceMethod.h
| |   
* | commit 2660a96ceb27313d4f22f852e385113a1c67976f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 29 09:39:31 2012 +0200
| | 
| |     fix compile error when lapack is not available
| | 
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.h
| |   
* | commit 11eba43fb702deea0115822733984e8c57c924b8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 29 00:16:55 2012 +0200
| | 
| |     drop doxygen mainpage from liblbfgs (clashes with shogun mainpage)
| | 
| | M	src/shogun/optimization/lbfgs/lbfgs.h
| |     
* |   commit d1ee0784f8103808c9f274f453d1cae1eaba84be
|\ \  Merge: b283832 3152cc8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 09:54:43 2012 -0700
| | | 
| | |     Merge pull request #608 from karlnapf/master
| | |     
| | |     convienience methods fot two-sample-tests
| | |    
| * | commit 3152cc878368f5cf0e5443fb6d99f8780c230b59
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:50:40 2012 +0100
| | | 
| | |     filled convienience constructor with content
| | | 
| | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | |    
| * | commit 10aed36fade4e4b5b8c6799bfbc38cd45ff6b5cd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:50:26 2012 +0100
| | | 
| | |     added convienience constructor for appending features
| | | 
| | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | |    
| * | commit 6628d4282c087ad5160a30a5afae29159fa7f7d5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:37:02 2012 +0100
| | | 
| | |     added newobject instruction for create_merged_copy
| | | 
| | | M	src/interfaces/modular/Features.i
| | |    
| * | commit 98155d7168fab2f1f23e9d64f56e1b1a1722e9e4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:34:47 2012 +0100
| | | 
| | |     added example/test for create_merged_features with case for dense features
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/features_create_merged_copy.cpp
| | |    
| * | commit ea9393e0916e63eb883ffa7557cb41f09ff5442a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:34:16 2012 +0100
| | | 
| | |     fixed a memory bug and added debug messages
| | | 
| | | M	src/shogun/features/DenseFeatures.cpp
| | |    
| * | commit 1cc705181c697555507d1c348012863b9a03ec05
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:18:52 2012 +0100
| | | 
| | |     initial implementation of create_merged_copy
| | | 
| | | M	src/shogun/features/DenseFeatures.cpp
| | | M	src/shogun/features/DenseFeatures.h
| | |    
| * | commit 69e929353722a0f87fb8a722fa82e3b94c5c4f63
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 17:18:26 2012 +0100
| | | 
| | |     updated documentation
| | | 
| | | M	src/shogun/features/Features.h
| | |    
| * | commit 95a0d0443dde4e47f969703630f9c70cea7d5e20
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 28 16:53:01 2012 +0100
| | | 
| | |     added create_merged_copy method
| | | 
| | | M	src/shogun/features/Features.h
| | |    
| * | commit c4b0eb6d862252eb81b948320b326c6ca9205c7e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 27 18:21:40 2012 +0100
| | | 
| | |     constructor documentation and work on convienience constructor that
| | |     appends features
| | | 
| | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | |    
| * | commit 5b718f5f35ab94edf7954b20e46728d1e0ebcb0a
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jun 27 17:56:54 2012 +0100
| |   
| |       first commit for ocnvienience method for constructor
| |   
| |   M	src/shogun/statistics/LinearTimeMMD.cpp
| |   M	src/shogun/statistics/LinearTimeMMD.h
| |   
* | commit b2838322b1fcb680684a5f98b667b7eb97702d1d
|/  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
|   Date:   Thu Jun 28 20:06:17 2012 +0400
|   
|       Fixed compilation warnings
|   
|   M	src/shogun/multiclass/tree/VwConditionalProbabilityTree.cpp
|   M	src/shogun/regression/svr/LibLinearRegression.cpp
|  
* commit a1b9e166615565e49b1c7cd6cfdd0361aeeb9f21
| Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| Date:   Thu Jun 28 19:30:44 2012 +0400
| 
|     Fixed task group SLEP ind manage routine
| 
| M	src/shogun/transfer/multitask/TaskGroup.cpp
|    
*   commit e80c6466f05d4547d4c4b7bf400350946635a6a2
|\  Merge: c9b592d 814db1d
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Jun 28 02:54:30 2012 +0400
| | 
| |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| |   
| * commit 814db1d85f2b8961eb5726f3f1ac5fcca2314f12
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Thu Jun 28 02:53:55 2012 +0400
| | 
| |     Implemented missed task tree handling
| | 
| | M	src/shogun/transfer/multitask/Task.cpp
| | M	src/shogun/transfer/multitask/TaskGroup.cpp
| | A	src/shogun/transfer/multitask/TaskRelation.cpp
| | M	src/shogun/transfer/multitask/TaskRelation.h
| | M	src/shogun/transfer/multitask/TaskTree.cpp
| | M	src/shogun/transfer/multitask/TaskTree.h
| |   
* | commit c9b592dfa7a5518c02a4786fb0087b7107bb93cc
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Wed Jun 27 23:11:44 2012 +0400
| | 
| |     Fixed get transposed in sparse features
| | 
| | M	src/shogun/features/SparseFeatures.cpp
| |     
* |   commit db17b2425589cbdf408bab934665350b17ab64b2
|\ \  Merge: 7bac16a c34d4bd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 27 10:27:21 2012 -0700
| | | 
| | |     Merge pull request #607 from puffin444/master
| | |     
| | |     Model Selection Parameter Name Fix.
| | |    
| * | commit c34d4bdc81a631d7c5d0c07d09ee16e58c8b329c
|/ /  Author: puffin444 <walke434@msu.edu>
| |   Date:   Wed Jun 27 13:24:38 2012 +0000
| |   
| |       Fixed some parameter names and examples.
| |   
| |   M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| |   M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| |   M	src/shogun/evaluation/GradientEvaluation.cpp
| |   M	src/shogun/modelselection/GradientModelSelection.cpp
| |   M	src/shogun/modelselection/ParameterCombination.cpp
| |   M	src/shogun/regression/GaussianProcessRegression.cpp
| |   M	src/shogun/regression/gp/InferenceMethod.cpp
| |   
* | commit 7bac16aa78eced5f7d53191a41e69c142a002e6a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 27 18:58:02 2012 +0200
| | 
| |     Revert "disable example when NLOPT is not available"
| |     
| |     This reverts commit cd63a592f56bfaef5fbee3f5045bdd1c4d37f6fe. puffin has
| |     a much better fix to this problem.
| | 
| | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| |     
* |   commit eade5bdda3768cf57dcb03af882661332bac52ca
|\ \  Merge: 6e9cc41 21fbe11
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 27 09:52:40 2012 -0700
| | | 
| | |     Merge pull request #605 from pluskid/multiclass
| | |     
| | |     ShareBoost py-modular interface
| | |    
| * | commit 21fbe11ebf9f2d5001fd86aa55a3d92f284a1d27
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Jun 27 21:21:48 2012 +0800
| | | 
| | |     slight improvements to some other MC py-modular examples
| | | 
| | | M	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| | | M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | |    
| * | commit f5ef5961628ad9e0eea3cb92646ceee7a628ca8a
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Wed Jun 27 21:07:57 2012 +0800
| | | 
| | |     Added ShareBoost python modular interface and example
| | | 
| | | A	examples/undocumented/python_modular/classifier_multiclass_shareboost.py
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/interfaces/modular/Multiclass_includes.i
| | |    
| * | commit 48af5bddc52f8d2e22d533070692ac44763402fa
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon Jun 25 20:00:56 2012 +0800
| | | 
| | |     added subset features to modular interface.
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/Features_includes.i
| | |      
* | |   commit 6e9cc41585253a9d09b0d43de9ed4255cc8fbc7c
|\ \ \  Merge: cd63a59 f4b4c8f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 27 09:50:56 2012 -0700
| | | | 
| | | |     Merge pull request #606 from puffin444/master
| | | |     
| | | |     Gaussian Process Example Fix.
| | | |     
| * | | commit f4b4c8f1319b5655c0675331490273d0ae57291d
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Wed Jun 27 12:46:38 2012 +0000
| | | | 
| | | |     Allowed the Gaussian Process Regression example to behave gracefully
| | | |     in the event NLOPT is not present.
| | | | 
| | | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | |     
* | | | commit cd63a592f56bfaef5fbee3f5045bdd1c4d37f6fe
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jun 27 18:47:27 2012 +0200
| | |   
| | |       disable example when NLOPT is not available
| | |   
| | |   M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | |    
* | | commit 9d3c1a102fe5bf6fca754aacba00eec03cb167f9
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 27 18:22:14 2012 +0200
| |   
| |       fix compile errors in java and csharp modular
| |   
| |   M	src/interfaces/modular/Library.i
| |   M	src/interfaces/modular/Library_includes.i
| |   M	src/interfaces/modular/Structure.i
| |   M	src/interfaces/modular/Structure_includes.i
| |   M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit d74ef698346ee651b73f8888b472f6b02cf3fdb2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 27 09:57:44 2012 +0200
| | 
| |     fix warnings in modular interfaces
| | 
| | M	src/interfaces/modular/Evaluation.i
| | M	src/interfaces/modular/Evaluation_includes.i
| | M	src/interfaces/modular/Machine.i
| |   
* | commit 4a337b818e08ca5dec7392b34aa4d468bf819db2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 27 09:57:27 2012 +0200
| | 
| |     fix typo
| | 
| | M	src/shogun/evaluation/MachineEvaluation.h
| |   
* | commit bd0fd924f2bcdfa7fb6ae4809ca3fff1ebba1d6c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 27 09:47:17 2012 +0200
| | 
| |     remove german umlaut from code -> ascii only
| | 
| | M	src/shogun/statistics/LinearTimeMMD.h
| | M	src/shogun/statistics/QuadraticTimeMMD.h
| |     
* |   commit 60e54eddbf796fbaf9b6bab9c3538e39a4aa4e68
|\ \  Merge: c9ae118 90d49c8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 27 00:01:43 2012 -0700
| | | 
| | |     Merge pull request #603 from puffin444/master
| | |     
| | |     Gradient Search Framework.
| | |      
| * |   commit 90d49c813e480505c190d02e5ee47ee9b1d5e877
| |\ \  Merge: 9e5863a c9ae118
| |/ /  Author: puffin444 <walke434@msu.edu>
|/| |   Date:   Wed Jun 27 02:53:04 2012 +0000
| | |   
| | |       Fixed conflicts with main branch
| | |       
| | |       Conflicts:
| | |       	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | |       	src/shogun/modelselection/ModelSelectionParameters.cpp
| | |       	src/shogun/modelselection/ParameterCombination.cpp
| | |    
* | | commit c9ae1181359c6d52b4582dfdf2a63bd8867d5c97
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 27 00:43:40 2012 +0200
| | | 
| | |     fix compile error on java modular
| | | 
| | | M	src/interfaces/modular/Transfer.i
| | |      
* | |   commit 062bc5f9e8caf3cc52b22b41df717a60515c0703
|\ \ \  Merge: b501667 e53fe46
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 26 13:59:53 2012 -0700
| | | | 
| | | |     Merge pull request #604 from karlnapf/master
| | | |     
| | | |     fix for wrong model selection parameter combinations
| | | |     
| * | | commit e53fe46419751e5835a607acdbc820fd77150792
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 26 21:56:23 2012 +0100
| | | | 
| | | |     corrected a wrongly named field
| | | | 
| | | | M	src/shogun/lib/Set.h
| | | |     
| * | | commit 8023b210ec57a7735d5882726a3ffaa2b47900ec
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jun 26 21:54:49 2012 +0100
| | |   
| | |       -fixed a problem where combinations of a model selection parameter tree
| | |       were generated wrong. This was quite a big deal - new methods for different
| | |       tree product types were added. Hopefully works now.
| | |       -Added many more tests and corrected old example
| | |   
| | |   M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |   M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | |   M	src/shogun/modelselection/ModelSelectionParameters.h
| | |   M	src/shogun/modelselection/ParameterCombination.cpp
| | |   M	src/shogun/modelselection/ParameterCombination.h
| | |    
* | | commit b501667ed43aab10f73dd31eaf9ed40fde9941af
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 26 22:00:07 2012 +0200
| | | 
| | |     remove zero width space causing errors
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | |    
* | | commit 3eb7bcddc22e17a9db5c923b6ebf1b9be576310a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Tue Jun 26 23:36:51 2012 +0400
| | | 
| | |     Got examples back to work
| | | 
| | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | |      
* | |   commit 7c20b8c868781408a78745375314725d6fc46436
|\ \ \  Merge: 3ee917a d3bb757
| |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Tue Jun 26 07:33:34 2012 -0700
| | |   
| | |       Merge pull request #602 from pluskid/fix-swig-segfault
| | |       
| | |       fix SO modular compile segfault.
| | |    
| * | commit d3bb757abd36980540a0f9bee473b6fedc585947
|/ /  Author: Chiyuan Zhang <pluskid@gmail.com>
| |   Date:   Tue Jun 26 19:50:53 2012 +0800
| |   
| |       fix SO modular compile segfault.
| |   
| |   M	src/interfaces/modular/Structure.i
| |   M	src/interfaces/modular/Structure_includes.i
| |   
| * commit 9e5863a27379cce08bd0ec75815e0791060090d7
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Wed Jun 27 02:47:04 2012 +0000
| | 
| |     Fixed some coding stylistic issues. Added enums for Evaluation Result.
| |     Added Evaluation Criterion for Gradient Search. Added new functions
| |     for generating, accessing, and modifying Parameter Combination Trees.
| | 
| | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_mkl.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/evaluation/DifferentiableFunction.h
| | M	src/shogun/evaluation/EvaluationResult.h
| | A	src/shogun/evaluation/GradientCriterion.cpp
| | A	src/shogun/evaluation/GradientCriterion.h
| | M	src/shogun/evaluation/GradientEvaluation.cpp
| | M	src/shogun/evaluation/GradientEvaluation.h
| | M	src/shogun/evaluation/GradientResult.cpp
| | M	src/shogun/evaluation/GradientResult.h
| | M	src/shogun/evaluation/MachineEvaluation.cpp
| | M	src/shogun/evaluation/MachineEvaluation.h
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/lib/Map.h
| | M	src/shogun/lib/SGString.h
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| | M	src/shogun/modelselection/GradientModelSelection.h
| | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | M	src/shogun/modelselection/ModelSelection.cpp
| | M	src/shogun/modelselection/ModelSelection.h
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/modelselection/ParameterCombination.h
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/GaussianProcessRegression.h
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | M	src/shogun/regression/gp/InferenceMethod.cpp
| | M	src/shogun/regression/gp/InferenceMethod.h
| | M	src/shogun/regression/gp/LikelihoodModel.h
| | M	src/shogun/regression/gp/MeanFunction.h
| | M	src/shogun/regression/gp/ZeroMean.cpp
| | M	src/shogun/regression/gp/ZeroMean.h
| |   
| * commit f6b432dd73b1062fb7e80ef722b89d7fc7dc5a32
| | Author: puffin444 <walke434@msu.edu>
| | Date:   Tue Jun 26 08:56:43 2012 +0000
| | 
| |     Fixed conflicts with main branch.
| | 
| | M	src/shogun/modelselection/GradientModelSelection.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | M	src/shogun/regression/gp/GaussianLikelihood.h
| |     
| *   commit a915783b0271f72112010ec8a107f35347113032
| |\  Merge: 10c1217 3ee917a
| |/  Author: puffin444 <walke434@msu.edu>
|/|   Date:   Tue Jun 26 08:55:36 2012 +0000
| |   
| |       Merge remote branch 'upstream/master'
| |       
| |       Conflicts:
| |       	src/shogun/regression/gp/GaussianLikelihood.cpp
| |       	src/shogun/regression/gp/InferenceMethod.cpp
| |   
* | commit 3ee917a718f73354b21f0ffc0f3b2ba3c43eba5c
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Tue Jun 26 05:06:59 2012 +0400
| | 
| |     Fixed a bunch of bugs in multitask logistic regression
| | 
| | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| |   
* | commit a9375870d4f38ba6146940d7e51ab4aa192360bd
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Jun 25 23:33:49 2012 +0400
| | 
| |     Updated multitask logistic regression
| | 
| | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | M	src/shogun/lib/slep/slep_mt_lr.h
| | M	src/shogun/lib/slep/slep_options.h
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| |   
* | commit 19a6e350ff494d53390912a9720b1c9f335821b5
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Jun 25 21:18:28 2012 +0400
| | 
| |     Removed useless nulling
| | 
| | M	src/shogun/lib/SGSparseMatrix.h
| |   
* | commit 845c6c5df5dee3653f58e62360ea32d6aec6b574
| | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | Date:   Mon Jun 25 21:12:41 2012 +0400
| | 
| |     Added dummy task doc
| | 
| | M	src/shogun/transfer/multitask/Task.h
| |     
* |   commit 6e86d28d55827d66c66741e9055625bbcb0c6509
|\ \  Merge: d3db2a6 9264c84
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 21:05:22 2012 +0400
| | | 
| | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | |    
| * | commit 9264c84d255c008d62b5391149df138987cfa6ff
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 21:04:41 2012 +0400
| | | 
| | |     Updated multitask logistic regression
| | | 
| | | M	src/shogun/lib/slep/slep_mt_lr.cpp
| | | M	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | |    
* | | commit d3db2a6faaab425a40208d7efc104e32594f6d20
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 15:13:49 2012 +0400
| | | 
| | |     Removed warning in OnlineLibLinear
| | | 
| | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | |    
* | | commit a45e3705a2fc6e574bab96ff9fa1d1ea375c5ac8
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 15:07:41 2012 +0400
| | | 
| | |     Rearranged initialization in CTask
| | | 
| | | M	src/shogun/transfer/multitask/Task.cpp
| | |    
* | | commit cf577de4b17e998d5ff96dad890e1f91270d40a1
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 15:02:26 2012 +0400
| | | 
| | |     Removed warning in kernel
| | | 
| | | M	src/shogun/kernel/Kernel.cpp
| | |    
* | | commit f7651177d8b83ff9edb3ea7d9c68fe49923f278a
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 15:02:01 2012 +0400
| | | 
| | |     A bunch of fixes for tree part of SLEP
| | | 
| | | M	src/shogun/lib/slep/slep_options.h
| | | M	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | M	src/shogun/lib/slep/tree/altra.cpp
| | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | |      
* | |   commit 43fe9aa6e602f37e79615300705dd15d0b210d55
|\ \ \  Merge: 0587779 1381692
| |/ /  Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | |   Date:   Mon Jun 25 04:06:45 2012 +0400
| | |   
| | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | |    
| * | commit 13816926ef70f0041e2d754e577a3e4cd72aef9c
| | | Author: Sergey Lisitsyn <lisitsyn.s.o@gmail.com>
| | | Date:   Mon Jun 25 04:06:13 2012 +0400
| | | 
| | |     Added Multitask Logistic Regression
| | | 
| | | M	src/interfaces/modular/Transfer.i
| | | M	src/interfaces/modular/Transfer_includes.i
| | | A	src/shogun/lib/slep/q1/eppMatrix.cpp
| | | M	src/shogun/lib/slep/q1/eppMatrix.h
| | | A	src/shogun/lib/slep/q1/epph.cpp
| | | M	src/shogun/lib/slep/q1/epph.h
| | | A	src/shogun/lib/slep/slep_mt_lr.cpp
| | | A	src/shogun/lib/slep/slep_mt_lr.h
| | | A	src/shogun/transfer/multitask/MultitaskLogisticRegression.cpp
| | | A	src/shogun/transfer/multitask/MultitaskLogisticRegression.h
| | |      
* | |   commit 05877796c55bd5757d133ddff9e5e1cfa72e9dea
|\ \ \  Merge: ddad7f3 e0731f6
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 24 16:49:52 2012 -0700
| | | | 
| | | |     Merge pull request #597 from pluskid/multiclass
| | | |     
| | | |     ShareBoost
| | | |     
| * | | commit e0731f68fc8fa7520019412191f8821861326fcf
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:41:36 2012 +0800
| | | | 
| | | |     completely eliminate arithmetic_ansi in lbfgs.
| | | | 
| | | | D	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit 21dc9b2b283e6deaef48026b3d881be71ce7b641
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:31:39 2012 +0800
| | | | 
| | | |     replace vecdiff with SGVector::add
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit 5537eb8f81f13fb307b3891d689fa53f3ace8923
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:30:00 2012 +0800
| | | | 
| | | |     replace vecadd with SGVector::add
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit fbe3b9f4cd572b760774f02387b30d3b221f10d7
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:23:26 2012 +0800
| | | | 
| | | |     replace negative vector copy with std::copy and SGVec::scale_vector
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit 335bf588043e4a3aaa06576ceafdf9ae0a5c236d
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:19:10 2012 +0800
| | | | 
| | | |     replace veccpy with std::copy
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit 02a6d4d49526d49f5316d527de0b4c9a1f4f97c4
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:14:52 2012 +0800
| | | | 
| | | |     replace lbfgs_malloc with SG_CALLOC
| | | | 
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | | M	src/shogun/optimization/lbfgs/lbfgs.h
| | | |     
| * | | commit ac4e4b5c016debdc92411aec1c46e4882a43d6fa
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:13:03 2012 +0800
| | | | 
| | | |     replace vecfree with SG_FREE
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit a42acf4fc38567487730bc8bcf7445138c867a7f
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:12:03 2012 +0800
| | | | 
| | | |     refactor: remove lbfgs_vecalloc
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | |     
| * | | commit b958efb0eeafec4ed0d1b1d362052ac5a19d314b
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 22:07:53 2012 +0800
| | | | 
| | | |     First step of refactoring lbfgs.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | M	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | | M	src/shogun/optimization/lbfgs/lbfgs.h
| | | |     
| * | | commit 3fb0da1d89b6381121699eaab5dfc658fd796afc
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat Jun 23 20:57:18 2012 +0800
| | | | 
| | | |     try to refactor lbfgs.
| | | | 
| | | | M	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | D	src/shogun/optimization/lbfgs/arithmetic_sse_double.h
| | | | D	src/shogun/optimization/lbfgs/arithmetic_sse_float.h
| | | | D	src/shogun/optimization/lbfgs/lbfgs.c
| | | | A	src/shogun/optimization/lbfgs/lbfgs.cpp
| | | | M	src/shogun/optimization/lbfgs/lbfgs.h
| | | |     
| * | | commit 7ca5f26bd8605ea7d16eab173bd5a03b80b5fefa
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 22:45:46 2012 +0800
| | | | 
| | | |     improve shareboost libshogun example.
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_multiclass_shareboost.cpp
| | | |     
| * | | commit 5265d9a47428aefc38b3447ec548ee3b0d108616
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 22:38:39 2012 +0800
| | | | 
| | | |     fix gradient computing bug.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | |     
| * | | commit e2627afce24345ff9f2a84de124c5a4ed175d2a7
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 22:25:32 2012 +0800
| | | | 
| | | |     fix SG_UNREF hanging bug.
| | | | 
| | | | M	src/shogun/features/DenseSubsetFeatures.h
| | | | M	src/shogun/machine/LinearMachine.h
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | |     
| * | | commit e53dd8bc159e875a19136c586e94702a3b3c9afd
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 19:07:45 2012 +0800
| | | | 
| | | |     Added trace log to ShareBoost optimization.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.h
| | | |     
| * | | commit 789bd1132f9c486d6aedcd9876a337a02dc6e814
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 19:00:56 2012 +0800
| | | | 
| | | |     fix shareboost example of reading labels.
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_multiclass_shareboost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | |     
| * | | commit 86f4c8ec733486aecb6b8c04c3d6d8b9802751d5
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri Jun 22 18:48:28 2012 +0800
| | | | 
| | | |     Added an libshogun example for shareboost.
| | | | 
| | | | A	examples/undocumented/libshogun/classifier_multiclass_shareboost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | |     
| * | | commit 0b71271c748b640bf0eb2e5d9014e1e1b37c600b
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Thu Jun 21 22:48:58 2012 +0800
| | | | 
| | | |     ShareBoost algorithm: now it compiles.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | | M	src/shogun/multiclass/ShareBoostOptimizer.h
| | | |     
| * | | commit 157ef006e7c9b947f21824779de985de8b7f3c6e
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Wed Jun 20 22:53:46 2012 +0800
| | | | 
| | | |     Added an optimizer to solve for ShareBoost.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | | A	src/shogun/multiclass/ShareBoostOptimizer.cpp
| | | | A	src/shogun/multiclass/ShareBoostOptimizer.h
| | | |     
| * | | commit fa01a70c9ee94dc1102c49a2a6da220ef0592106
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Mon Jun 18 22:34:14 2012 +0800
| | | | 
| | | |     Added SubsetFeatures to handle Feature Selection in Learning.
| | | | 
| | | | A	src/shogun/features/DenseSubsetFeatures.cpp
| | | | A	src/shogun/features/DenseSubsetFeatures.h
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | |     
| * | | commit d14bfd8912483f2f684442b2351c29eabe723565
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sun Jun 17 19:36:37 2012 +0800
| | | | 
| | | |     Basic shape of the ShareBoost algorithm.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | |     
| * | | commit 1ef213aac16a34023d19e4aa1bd10e58a41c7f32
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sun Jun 17 19:11:57 2012 +0800
| | | | 
| | | |     fix compile errors.
| | | | 
| | | | M	src/shogun/multiclass/ShareBoost.cpp
| | | | M	src/shogun/multiclass/ShareBoost.h
| | | |     
| * | | commit b4aa70efd678083ee50435cf3050c50c2e2b4f98
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sun Jun 17 19:04:23 2012 +0800
| | | | 
| | | |     Added ShareBoost skeleton.
| | | | 
| | | | A	src/shogun/multiclass/ShareBoost.cpp
| | | | A	src/shogun/multiclass/ShareBoost.h
| | | |     
| * | | commit 16cb37f8da58a2231495e314a62584a22a976a97
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Wed Jun 20 20:47:36 2012 +0800
| | | | 
| | | |     port lib-lbfgs example code into libshogun.
| | | | 
| | | | A	examples/undocumented/libshogun/optimization_lbfgs.cpp
| | | |     
| * | | commit 1d56f628f06da3003e4390076f859d6bdc8bb21b
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Wed Jun 20 20:39:36 2012 +0800
| | | | 
| | | |     Added lib-lbfgs in shogun.
| | | | 
| | | | A	src/shogun/optimization/lbfgs/arithmetic_ansi.h
| | | | A	src/shogun/optimization/lbfgs/arithmetic_sse_double.h
| | | | A	src/shogun/optimization/lbfgs/arithmetic_sse_float.h
| | | | A	src/shogun/optimization/lbfgs/lbfgs.c
| | | | A	src/shogun/optimization/lbfgs/lbfgs.h
| | | |     
* | | | commit ddad7f3dd22411d7a42a7cf3b363258eb1770896
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 24 17:38:20 2012 +0400
| | | | 
| | | |     Got sparse features to work
| | | | 
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | M	src/shogun/features/SparseFeatures.cpp
| | | | M	src/shogun/lib/SGSparseMatrix.h
| | | |     
* | | | commit a55f5004f439b6577c8566f5fb65fb674291c25b
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 24 16:50:23 2012 +0400
| | | | 
| | | |     Updated gitignore
| | | | 
| | | | M	.gitignore
| | | |     
* | | | commit 57064fac88442e1b4dbb42029b4d18f9d2f7f83d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 24 16:49:33 2012 +0400
| | | | 
| | | |     Fixed dense matrix handling in sparse features
| | | | 
| | | | M	src/shogun/features/SparseFeatures.cpp
| | | | M	src/shogun/features/SparseFeatures.h
| | | |     
* | | | commit 916983daf9830d0f398c2ccb41ae1c04a97b270f
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 24 14:55:36 2012 +0400
| | | | 
| | | |     Made SGSparseVector inherited from SGReferencedData
| | | | 
| | | | M	src/shogun/features/SparseFeatures.cpp
| | | | M	src/shogun/features/SparseFeatures.h
| | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | M	src/shogun/lib/SGSparseVector.h
| | | |       
* | | |   commit d456ac567823f1c9fe532005f915a9355de4b0db
|\ \ \ \  Merge: 75ced4d 2a0b3c4
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jun 23 14:26:52 2012 -0700
| | | | | 
| | | | |     Merge pull request #601 from karlnapf/master
| | | | |     
| | | | |     some parameter registrations to make Jacobs GP example run
| | | | |      
| * | | | commit 2a0b3c49ebf6b0ba4936b6ebd970e9eacdb09af5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jun 23 22:25:24 2012 +0100
| | | | | 
| | | | |     added an init method and registered some parameters to make Jacobs example run
| | | | | 
| | | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | | |        
* | | | |   commit 75ced4dc6bda21bb1a5f62d9271527462a1b2326
|\ \ \ \ \  Merge: 63eb741 7801544
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Sat Jun 23 14:25:41 2012 -0700
| | | | |   
| | | | |       Merge pull request #600 from karlnapf/master
| | | | |       
| | | | |       work of the week for MMD
| | | | |      
| * | | | commit 7801544381e1240b700a64f2162f43d7544a4a2f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Jun 23 21:20:32 2012 +0100
| | | | | 
| | | | |     added statistics module to modular interfaces
| | | | | 
| | | | | M	src/Makefile.template
| | | | | M	src/shogun/CMakeLists.txt
| | | | |      
| * | | | commit b3a9bfbb59f22afde6f31dd2225390cebddf5a21
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 19:33:23 2012 +0100
| | | | | 
| | | | |     added Statistics to modshogun.i
| | | | | 
| | | | | M	src/interfaces/modular/modshogun.i
| | | | |      
| * | | | commit ea5b8193031309b9b89dbf4b4c4e8593b7033e81
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 19:22:01 2012 +0100
| | | | | 
| | | | |     initial add
| | | | | 
| | | | | A	src/interfaces/modular/Statistics_includes.i
| | | | |      
| * | | | commit e15631f093ece9efded5c3080b982228b30e20b6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 19:18:01 2012 +0100
| | | | | 
| | | | |     initial add of statistical tests for modular interfaces
| | | | | 
| | | | | A	src/interfaces/modular/Statistics.i
| | | | |      
| * | | | commit 4a95994d8a511173f5e4a645378f6525a35ce5eb
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 19:17:38 2012 +0100
| | | | | 
| | | | |     renamed binary test method to reduce compiler confusion
| | | | | 
| | | | | M	src/shogun/statistics/StatisticalTest.cpp
| | | | | M	src/shogun/statistics/StatisticalTest.h
| | | | |      
| * | | | commit eec1cb7cc9111f6f9e53807192ccf932d78a1cac
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 19:12:35 2012 +0100
| | | | | 
| | | | |     -moved perform_test to StatisticalTest class
| | | | |     -added documentation
| | | | | 
| | | | | M	src/shogun/statistics/StatisticalTest.cpp
| | | | | M	src/shogun/statistics/StatisticalTest.h
| | | | | M	src/shogun/statistics/TestStatistic.h
| | | | |      
| * | | | commit c3d7a15a34baae7ac6780129d345cc0376e28d24
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 18:57:32 2012 +0100
| | | | | 
| | | | |     added documentation
| | | | | 
| | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | |      
| * | | | commit a66575baf06f229e0bbbe626c8c85edee8132ff7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 18:05:50 2012 +0100
| | | | | 
| | | | |     fix and a test for type2 error computation
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | | |      
| * | | | commit 0cfcd32ea293edc43912acbf28ff858678302335
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 18:05:26 2012 +0100
| | | | | 
| | | | |     small fix
| | | | | 
| | | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | |      
| * | | | commit 3546ade5c2fdd38475edcad39ee7557565f905f7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 17:12:25 2012 +0100
| | | | | 
| | | | |     added some tests for the variance estimate for Gaussian approximation
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | | |      
| * | | | commit 3e71e3636d10d1c2e6e7e333fbc8bb8304899346
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 21 17:12:03 2012 +0100
| | | | | 
| | | | |     little fixes
| | | | | 
| | | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | |      
| * | | | commit 5e318cb47d72d7b11c3a2ef79edf3f6cc5c99f62
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 23:09:33 2012 +0100
| | | | | 
| | | | |     added gaussian approximation to compute p-value to linear time mmd
| | | | | 
| | | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | | |      
| * | | | commit 35510087f510157e7502e0cc126038a95e1c20c5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 23:09:09 2012 +0100
| | | | | 
| | | | |     added custom standard deviation to normal_cdf
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| * | | | commit 81c09277b7f6e297307a2cc07946ad99daebc1b7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 22:30:03 2012 +0100
| | | | | 
| | | | |     added example/test for normal_cdf, error_function, error_function_complement
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics.cpp
| | | | |      
| * | | | commit 475ec7716e226393edf7cfde5bfd9be3c87ccadd
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 22:29:43 2012 +0100
| | | | | 
| | | | |     renamed normal_distribution to normal_cdf which is more descriptive
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| * | | | commit fccd8aa739f4fed1445bcf39ecb9c76e2560ddda
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 21:45:19 2012 +0100
| | | | | 
| | | | |     added normal distribution, error function and complement
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| * | | | commit 814325aec2f4e5f4608d150be1dba921b354cb15
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 11:37:20 2012 +0100
| | | | | 
| | | | |     added example/test for linear time mmd
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/statistics_linear_time_mmd.cpp
| | | | |      
| * | | | commit 3e478684156c9e94c07f65e88693d3dc9821c8e7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 20 11:37:11 2012 +0100
| | | | | 
| | | | |     finished linear time statistic basics
| | | | | 
| | | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | | M	src/shogun/statistics/LinearTimeMMD.h
| | | | |      
| * | | | commit 119c45cca83966b09ab12141b3c359aa9a199394
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 19 22:22:38 2012 +0100
| | | | | 
| | | | |     added documentation
| | | | | 
| | | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | |      
| * | | | commit 9e1385365a4cd466599c7ba2263baeacd057d7ff
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 19 22:20:10 2012 +0100
| | | | | 
| | | | |     -moved perform_test to CTestStatistic
| | | | |     -added lots of documentation
| | | | | 
| | | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.h
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | | M	src/shogun/statistics/TestStatistic.h
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | | |      
| * | | | commit 30adb03e266620500cd6a7b6f80b5c2164e9992b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 19 21:56:46 2012 +0100
| | | | | 
| | | | |     parameter selection for quadratic time mmd class
| | | | | 
| | | | | M	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | |      
| * | | | commit 093450ae51f90d262439bb9c43906dc6a30cb8cd
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 19 21:44:48 2012 +0100
| | | | | 
| | | | |     added a perform_test method to perform test automatically
| | | | | 
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | | |      
| * | | | commit ee55adccc77c997ffdd041e9149a25439f730e06
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Tue Jun 19 21:35:35 2012 +0100
| | | |   
| | | |       -added distinction between biased/unbiased quadratic MMD
| | | |       -added a small test
| | | |       -some documentation
| | | |   
| | | |   M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
* | | | commit 63eb7415072bf1a2d8eff565e975cf529e247d09
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 23 23:36:25 2012 +0400
| | | | 
| | | |     Removed unused variable in SVRLight
| | | | 
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | |       
* | | |   commit 89934f50a7db7bce2fc1acd6477fcda5ff3b6583
|\ \ \ \  Merge: a3904fe cb90bb9
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jun 22 11:32:28 2012 -0700
| | | | | 
| | | | |     Merge pull request #596 from iglesias/so
| | | | |     
| | | | |     Modular SO and python example
| | | | |      
| * | | | commit cb90bb9f30a92563d1f2c7f32adf6b9339b61b42
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Thu Jun 21 16:06:35 2012 +0200
| | | | | 
| | | | |     - use bias in mc-so and less print info
| | | | | 
| | | | | M	examples/undocumented/libshogun/so_multiclass.cpp
| | | | |      
| * | | | commit 67c592b0f5d7c752d02bae50e24f46343c349d2d
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Thu Jun 21 14:54:02 2012 +0200
| | | | | 
| | | | |     + so for modular interfaces + python example
| | | | | 
| | | | | A	examples/undocumented/python_modular/so_multiclass.py
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/Machine.i
| | | | | M	src/interfaces/modular/ModelSelection.i
| | | | | M	src/interfaces/modular/ModelSelection_includes.i
| | | | | M	src/interfaces/modular/Structure.i
| | | | |      
| * | | | commit 3dd7a60ae2888ce0fe7c56145b0b686adc0ea9d9
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Thu Jun 21 13:56:18 2012 +0200
| | | | | 
| | | | |     + CRealNumber::obtain_from_generic and * small doc fix
| | | | | 
| | | | | M	src/shogun/labels/StructuredLabels.cpp
| | | | | M	src/shogun/labels/StructuredLabels.h
| | | | | M	src/shogun/lib/StructuredData.cpp
| | | | | M	src/shogun/lib/StructuredData.h
| | | | | A	src/shogun/lib/StructuredDataTypes.h
| | | | | M	src/shogun/structure/MulticlassSOLabels.h
| | | | |      
| * | | | commit 242af6ab1d58eda71f53bc943de02be70ca645f0
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Tue Jun 19 15:46:32 2012 +0200
| | | | | 
| | | | |     + show classification results
| | | | | 
| | | | | M	examples/undocumented/libshogun/so_multiclass.cpp
| | | | |      
| * | | | commit d46b0e094c9270c9fc832ede7305bb11c1af215d
| | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | Date:   Tue Jun 19 15:40:24 2012 +0200
| | | | | 
| | | | |     - dead code
| | | | | 
| | | | | M	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | |      
| * | | | commit d2eec4120b43a67332bf083ad27526756e552269
| |/ / /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | | |   Date:   Tue Jun 19 15:39:57 2012 +0200
| | | |   
| | | |       ~ hinge loss adapted to sosvm requirements
| | | |   
| | | |   M	src/shogun/loss/HingeLoss.cpp
| | | |   M	src/shogun/loss/HingeLoss.h
| | | |       
* | | |   commit a3904fef1ec49daaaf9bb80ebbd77b15d17d6f80
|\ \ \ \  Merge: a65580a cc344dc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jun 22 11:05:47 2012 -0700
| | | | | 
| | | | |     Merge pull request #599 from cwidmer/master
| | | | |     
| | | | |     missing remove
| | | | |      
| * | | | commit cc344dcbbae41019d11e9f1696e0ad14c8e4ebf3
|/ / / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | |   Date:   Fri Jun 22 19:41:56 2012 +0200
| | | |   
| | | |       commit missing change
| | | |   
| | | |   M	src/shogun/lib/SGSparseVector.h
| | | |       
* | | |   commit a65580ae34a94b5bbcbbfe214f9582f9d8930ac6
|\ \ \ \  Merge: 9c2be58 4e514bf
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Fri Jun 22 10:25:38 2012 -0700
| | | |   
| | | |       Merge pull request #598 from cwidmer/master
| | | |       
| | | |       moved MappedSparseVector
| | | |     
| * | | commit 4e514bf58184af1649bceb903b178e0f4d91e3ed
| | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | Date:   Thu Jun 21 23:33:03 2012 +0200
| | | | 
| | | |     some clean-ups
| | | | 
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | |     
| * | | commit 0d8b83b9280800fef2ad481401bcb8500fa75c87
| | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | Date:   Thu Jun 21 23:22:08 2012 +0200
| | | | 
| | | |     removed operator[] from SGSparseVector, as functionality was moved
| | | | 
| | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | M	src/shogun/lib/SGSparseVector.h
| | | |     
| * | | commit cda9755a8395bf503944987849d6e1ddba92c5ad
| | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | Date:   Thu Jun 21 23:19:46 2012 +0200
| | | | 
| | | |     implemented pseudo-random accessible sparse matrix prototype
| | | | 
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | |     
| * | | commit 71fe7a56567c197cf1a0474a4ef44446410d4c53
|/ / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | |   Date:   Thu Jun 21 06:45:14 2012 +0200
| | |   
| | |       temporary work around
| | |   
| | |   M	src/interfaces/python_modular/swig_typemaps.i
| | |    
| | * commit 10c1217323e547db2378075be3862cd9796ab83a
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Tue Jun 26 08:38:16 2012 +0000
| | | 
| | |     Fixed some memory leaks/errors.
| | | 
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/ZeroMean.cpp
| | |    
| | * commit 2d9b30d61bd9982927e3195f2b5ad7cadcbb2ac4
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Tue Jun 26 03:31:41 2012 +0000
| | | 
| | |     added example
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | |    
| | * commit 3dc555ea12c7c915a1835d6e8652444e4eefc844
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Tue Jun 26 03:29:12 2012 +0000
| | | 
| | |     Finalized Gradient Search Model Selection
| | | 
| | | M	src/shogun/evaluation/DifferentiableFunction.cpp
| | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | M	src/shogun/evaluation/EvaluationResult.cpp
| | | M	src/shogun/evaluation/EvaluationResult.h
| | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | M	src/shogun/evaluation/GradientEvaluation.h
| | | M	src/shogun/evaluation/MachineEvaluation.h
| | | M	src/shogun/kernel/GaussianKernel.cpp
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/GradientModelSelection.h
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.h
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | M	src/shogun/regression/gp/InferenceMethod.h
| | | M	src/shogun/regression/gp/LikelihoodModel.cpp
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | M	src/shogun/regression/gp/MeanFunction.cpp
| | | M	src/shogun/regression/gp/MeanFunction.h
| | | M	src/shogun/regression/gp/ZeroMean.cpp
| | | M	src/shogun/regression/gp/ZeroMean.h
| | |    
| | * commit 6ca3f4c9c0848700122f1416242cd848d398f832
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Mon Jun 25 02:19:40 2012 +0000
| | | 
| | |     Cleaned up a lot of code.
| | | 
| | | M	src/shogun/evaluation/CrossValidation.h
| | | M	src/shogun/evaluation/DifferentiableFunction.cpp
| | | M	src/shogun/evaluation/DifferentiableFunction.h
| | | M	src/shogun/evaluation/EvaluationResult.cpp
| | | M	src/shogun/evaluation/EvaluationResult.h
| | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | M	src/shogun/evaluation/GradientEvaluation.h
| | | M	src/shogun/evaluation/GradientResult.cpp
| | | M	src/shogun/evaluation/GradientResult.h
| | | M	src/shogun/evaluation/MachineEvaluation.cpp
| | | M	src/shogun/evaluation/MachineEvaluation.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/GradientModelSelection.h
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | |    
| | * commit ceb62def4080165d18280816823a6beaa97c3122
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Sun Jun 24 01:05:14 2012 +0000
| | | 
| | |     Gradient Search for hyperparameter learning now fully implement.
| | |     Code needs to be tested and cleaned up.
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	src/shogun/evaluation/GradientEvaluation.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | |    
| | * commit 0aef6a85f91ae8da5cc776bd9eb113d1966df5eb
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Fri Jun 22 23:46:53 2012 +0000
| | | 
| | |     Model selections parameters can now be manipulated flawlessly.
| | |     Added assignment operator for CMap. Still some prototype code lurking around.
| | | 
| | | M	src/shogun/evaluation/GradientEvaluation.cpp
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/modelselection/GradientModelSelection.cpp
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | |    
| | * commit c651438c670e84e28b6e0ff1936cc1632c761b14
| |/  Author: puffin444 <walke434@msu.edu>
|/|   Date:   Thu Jun 21 22:28:36 2012 +0000
| |   
| |       Added new modelselection framework. I need to add a few details for the
| |       gradient search.
| |   
| |   M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| |   M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| |   M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   M	src/shogun/evaluation/CrossValidation.cpp
| |   M	src/shogun/evaluation/CrossValidation.h
| |   A	src/shogun/evaluation/DifferentiableFunction.cpp
| |   A	src/shogun/evaluation/DifferentiableFunction.h
| |   A	src/shogun/evaluation/EvaluationResult.cpp
| |   A	src/shogun/evaluation/EvaluationResult.h
| |   A	src/shogun/evaluation/GradientEvaluation.cpp
| |   A	src/shogun/evaluation/GradientEvaluation.h
| |   A	src/shogun/evaluation/GradientResult.cpp
| |   A	src/shogun/evaluation/GradientResult.h
| |   A	src/shogun/evaluation/MachineEvaluation.cpp
| |   A	src/shogun/evaluation/MachineEvaluation.h
| |   M	src/shogun/lib/SGString.h
| |   A	src/shogun/modelselection/GradientModelSelection.cpp
| |   A	src/shogun/modelselection/GradientModelSelection.h
| |   M	src/shogun/modelselection/GridSearchModelSelection.cpp
| |   M	src/shogun/modelselection/GridSearchModelSelection.h
| |   M	src/shogun/modelselection/ModelSelection.cpp
| |   M	src/shogun/modelselection/ModelSelection.h
| |   M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   M	src/shogun/modelselection/ModelSelectionParameters.h
| |   M	src/shogun/modelselection/ParameterCombination.cpp
| |   M	src/shogun/modelselection/ParameterCombination.h
| |   M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   M	src/shogun/regression/gp/ExactInferenceMethod.h
| |   M	src/shogun/regression/gp/InferenceMethod.h
| |     
* |   commit 9c2be581d55d9feb7568f4acbec080f496cff578
|\ \  Merge: a53beb2 a5c9046
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jun 21 10:08:31 2012 -0700
| | | 
| | |     Merge pull request #595 from uricamic/BM_SOL_EXAMPLE
| | |     
| | |     BMRM SOL Multiclass example
| | |    
| * | commit a5c90462f4a772bd38debd6f2d6c340c0b50d26b
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Thu Jun 21 14:27:29 2012 +0200
| | | 
| | |     BMRM SOL Multiclass example
| | | 
| | | A	examples/undocumented/libshogun/so_multiclass_BMRM.cpp
| | |      
* | |   commit a53beb2d57dc689b2d7541441f9cc18fc5425fa5
|\ \ \  Merge: cf381d6 d8c48bf
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jun 21 05:04:03 2012 -0700
| | |   
| | |       Merge pull request #594 from uricamic/BM_SOL2
| | |       
| | |       Bundle method solver - Example
| | |    
| * | commit d8c48bf249c8bd986006045c095f31013d95e7ff
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Thu Jun 21 13:57:54 2012 +0200
| | | 
| | |     DualLibQPBMSOSVM fixes due to changes in libbmrm and RiskFunction
| | | 
| | | M	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | M	src/shogun/structure/DualLibQPBMSOSVM.h
| | |    
| * | commit 6e12559b06c0262b096cca6b527eb6da673d4f68
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Thu Jun 21 13:50:35 2012 +0200
| | | 
| | |     minor RiskFunction change + MulticlassRiskFunction implementation
| | | 
| | | A	src/shogun/structure/MulticlassRiskFunction.cpp
| | | A	src/shogun/structure/MulticlassRiskFunction.h
| | | M	src/shogun/structure/RiskFunction.h
| | |    
| * | commit 2cbb2163b673f797df12141d08cbb3a07b6c8b6a
|/ /  Author: Michal Uricar <uricar.michal@gmail.com>
| |   Date:   Thu Jun 21 13:48:29 2012 +0200
| |   
| |       libbmrm fixes
| |   
| |   M	src/shogun/structure/libbmrm.cpp
| |   M	src/shogun/structure/libbmrm.h
| |     
* |   commit cf381d6262f925a446d29980c133459176fcf933
|\ \  Merge: f4d348f 0051549
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 20 12:55:57 2012 -0700
| | | 
| | |     Merge pull request #591 from puffin444/master
| | |     
| | |     Some fixes in GPR framework.
| | |    
| * | commit 005154954a552d09d157d0269c534d41b690e8ec
|/ /  Author: puffin444 <walke434@msu.edu>
| |   Date:   Wed Jun 20 15:51:27 2012 +0000
| |   
| |       Updated Gaussian Process Regression example.
| |       
| |       Removed references to iostream.
| |   
| |   M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| |   M	src/shogun/regression/GaussianProcessRegression.cpp
| |   M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| |   M	src/shogun/regression/gp/InferenceMethod.cpp
| |   
* | commit f4d348f4aa8f4b488c24c5a93718206f76616167
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 20 20:14:37 2012 +0200
| | 
| |     move kernel normalizers to shogun/kernel/normalizer
| | 
| | M	src/interfaces/modular/Kernel.i
| | M	src/interfaces/modular/Kernel_includes.i
| | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PolyKernel.cpp
| | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | M	src/shogun/kernel/SNPStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | D	src/shogun/kernel/normalize/AvgDiagKernelNormalizer.h
| | D	src/shogun/kernel/normalize/DiceKernelNormalizer.h
| | D	src/shogun/kernel/normalize/FirstElementKernelNormalizer.h
| | D	src/shogun/kernel/normalize/IdentityKernelNormalizer.h
| | D	src/shogun/kernel/normalize/KernelNormalizer.h
| | D	src/shogun/kernel/normalize/RidgeKernelNormalizer.h
| | D	src/shogun/kernel/normalize/ScatterKernelNormalizer.h
| | D	src/shogun/kernel/normalize/SqrtDiagKernelNormalizer.h
| | D	src/shogun/kernel/normalize/TanimotoKernelNormalizer.h
| | D	src/shogun/kernel/normalize/VarianceKernelNormalizer.h
| | D	src/shogun/kernel/normalize/ZeroMeanCenterKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/AvgDiagKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/DiceKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/FirstElementKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/IdentityKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/KernelNormalizer.h
| | A	src/shogun/kernel/normalizer/RidgeKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/ScatterKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/SqrtDiagKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/TanimotoKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/VarianceKernelNormalizer.h
| | A	src/shogun/kernel/normalizer/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/multiclass/ScatterSVM.cpp
| | M	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
| | M	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
| | M	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
| | M	src/shogun/ui/GUIKernel.cpp
| |   
* | commit 140515f139e1dd9605d96ea28a80d1bfd8e92a2d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 20 20:08:01 2012 +0200
| | 
| |     revert patch deactivating apply magic
| | 
| | M	src/interfaces/modular/Machine.i
| |     
* |   commit 5609bab55a56225ebab897728cbb865c4654f055
|\ \  Merge: c000355 694d9c8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 20 10:29:44 2012 -0700
| | | 
| | |     Merge pull request #585 from puffin444/master
| | |     
| | |     Gaussian Process Regression Framework.
| | |    
| * | commit 694d9c8a28a8592c893c1dda3e6f122ecf30fa7c
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Mon Jun 18 02:11:44 2012 +0000
| | | 
| | |     Added type system for likelihood models.
| | | 
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | M	src/shogun/regression/gp/LikelihoodModel.h
| | |    
| * | commit 06ee211613a33b0e3bf429b2d5cfebe4a6c16aeb
| | | Author: puffin444 <walke434@msu.edu>
| | | Date:   Thu Jun 14 12:02:38 2012 +0000
| | | 
| | |     Finalized Merge
| | | 
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | |      
| * |   commit a2aa079d6929f504068fe1f6bbd5734106d59564
| |\ \  Merge: c72bbd1 09518d6
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Thu Jun 14 11:35:19 2012 +0000
| | | | 
| | | |     Merge remote branch 'upstream/master'
| | | |     
| | | |     Conflicts:
| | | |     	src/shogun/regression/GaussianProcessRegression.cpp
| | | |     
| * | | commit c72bbd1eecf6dd24799a839a6ff3c84fddc82cbe
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Thu Jun 14 02:16:19 2012 +0000
| | | | 
| | | |     Viciously exterminated memory bugs.
| | | | 
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.cpp
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | | M	src/shogun/regression/gp/MeanFunction.cpp
| | | | M	src/shogun/regression/gp/MeanFunction.h
| | | | M	src/shogun/regression/gp/ZeroMean.cpp
| | | | M	src/shogun/regression/gp/ZeroMean.h
| | | |     
| * | | commit d44dfccc4ba4ef340eb6d786a18c8a30c45d21ce
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jun 12 15:59:51 2012 +0000
| | | | 
| | | |     Fixed yet more bugs. All functions fully mathematically accurate.
| | | |     Still needs to memory testing.
| | | | 
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | |     
| * | | commit 45446d2cb99cb105657a33523c234c01b91eab17
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jun 12 06:46:31 2012 +0000
| | | | 
| | | |     Lots of bug fixes and added comments
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/MeanFunction.cpp
| | | | M	src/shogun/regression/gp/MeanFunction.h
| | | | M	src/shogun/regression/gp/ZeroMean.h
| | | |     
| * | | commit 854a54c8554ba185185bc9fc077f2977b2f7645f
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Sun Jun 10 21:32:42 2012 +0000
| | | | 
| | | |     Added final touches. Full design, including mean functions, now
| | | |     integrated into shogun. Needs more testing.
| | | | 
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | M	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | M	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | M	src/shogun/regression/gp/GaussianLikelihood.h
| | | | M	src/shogun/regression/gp/InferenceMethod.cpp
| | | | M	src/shogun/regression/gp/InferenceMethod.h
| | | | M	src/shogun/regression/gp/LikelihoodModel.h
| | | | A	src/shogun/regression/gp/MeanFunction.cpp
| | | | A	src/shogun/regression/gp/MeanFunction.h
| | | | A	src/shogun/regression/gp/ZeroMean.cpp
| | | | A	src/shogun/regression/gp/ZeroMean.h
| | | |     
| * | | commit 271ec48c1b1f7f74701be9b21a40304d7457e8c5
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Thu Jun 7 05:00:31 2012 +0000
| | | | 
| | | |     Generalized design of Gaussian Process Regression
| | | | 
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | A	src/shogun/regression/gp/ExactInferenceMethod.cpp
| | | | A	src/shogun/regression/gp/ExactInferenceMethod.h
| | | | A	src/shogun/regression/gp/GaussianLikelihood.cpp
| | | | A	src/shogun/regression/gp/GaussianLikelihood.h
| | | | A	src/shogun/regression/gp/InferenceMethod.cpp
| | | | A	src/shogun/regression/gp/InferenceMethod.h
| | | | A	src/shogun/regression/gp/LikelihoodModel.cpp
| | | | A	src/shogun/regression/gp/LikelihoodModel.h
| | | |     
| * | | commit 1e5872a1485835b935da65191d427f910770303c
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jun 5 03:32:54 2012 +0000
| | | | 
| | | |     Implemented General Interface to Kernel Derivatives
| | | |     Implemented Derivative Calculation with respect to width
| | | |     for Gaussian Kernel
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | |     
| * | | commit 32b6850fe7d5429dcb8f5cb655a188aa29681819
| | | | Author: puffin444 <walke434@msu.edu>
| | | | Date:   Tue Jun 5 03:22:35 2012 +0000
| | | | 
| | | |     Revert "Implemented General Interface to Obtain Kernel Derivatives"
| | | |     
| | | |     This reverts commit 38fc46a564c3ea74b5c884c8ad9ab293d654fb60.
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | |     
| * | | commit 38fc46a564c3ea74b5c884c8ad9ab293d654fb60
| | | | Author: Live session user <ubuntu@ubuntu.(none)>
| | | | Date:   Tue Jun 5 03:08:23 2012 +0000
| | | | 
| | | |     Implemented General Interface to Obtain Kernel Derivatives
| | | |     with respect to parameters
| | | |     Implemented GaussianKernel derivative with respect to width.
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | |     
* | | | commit c000355ed225ed156a9ae00491d99267c9469edd
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jun 19 20:00:50 2012 +0200
| | | | 
| | | |     fix compile error due to so -> structure rename
| | | | 
| | | | D	src/shogun/so/DualLibQPBMSOSVM.cpp
| | | | D	src/shogun/so/DualLibQPBMSOSVM.h
| | | | D	src/shogun/so/RiskFunction.cpp
| | | | D	src/shogun/so/RiskFunction.h
| | | | D	src/shogun/so/libbmrm.cpp
| | | | D	src/shogun/so/libbmrm.h
| | | | A	src/shogun/structure/DualLibQPBMSOSVM.cpp
| | | | A	src/shogun/structure/DualLibQPBMSOSVM.h
| | | | A	src/shogun/structure/RiskFunction.cpp
| | | | A	src/shogun/structure/RiskFunction.h
| | | | A	src/shogun/structure/libbmrm.cpp
| | | | A	src/shogun/structure/libbmrm.h
| | | |       
* | | |   commit c16fde65065849e100e91171d1d9a315aa0c0386
|\ \ \ \  Merge: 24aad4d 4c424e4
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jun 19 10:36:10 2012 -0700
| | | | | 
| | | | |     Merge pull request #582 from uricamic/BM_SOL
| | | | |     
| | | | |     Bundle method solver for structured output learning [Work in progress]
| | | | |      
| * | | | commit 4c424e4a2a9817316d05795f7e17e6234ef28cb9
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Wed Jun 13 11:30:17 2012 +0200
| | | | | 
| | | | |     Indentation fixed + getter/setter for bmrm parameters in CDualLibQPBMSOSVM
| | | | | 
| | | | | M	src/shogun/so/DualLibQPBMSOSVM.cpp
| | | | | M	src/shogun/so/DualLibQPBMSOSVM.h
| | | | | M	src/shogun/so/RiskFunction.h
| | | | | M	src/shogun/so/libbmrm.cpp
| | | | |      
| * | | | commit c504412ee5486650addf710afcb226e6ace0dab5
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Wed Jun 13 09:11:07 2012 +0200
| | | | | 
| | | | |     Function get_dim removed from RiskFunction (will be available in StructuredModel)
| | | | | 
| | | | | M	src/shogun/so/DualLibQPBMSOSVM.cpp
| | | | | M	src/shogun/so/RiskFunction.h
| | | | | M	src/shogun/so/libbmrm.cpp
| | | | | M	src/shogun/so/libbmrm.h
| | | | |      
| * | | | commit d6c26967e14abdd4d32f9070200ce0753bb6332d
| | | | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | | | Date:   Thu Jun 7 17:02:55 2012 +0200
| | | | | 
| | | | |     DualLibQPBMSOSVM interface for libbmrm
| | | | | 
| | | | | A	src/shogun/so/DualLibQPBMSOSVM.cpp
| | | | | A	src/shogun/so/DualLibQPBMSOSVM.h
| | | | | A	src/shogun/so/RiskFunction.cpp
| | | | | A	src/shogun/so/RiskFunction.h
| | | | | A	src/shogun/so/libbmrm.cpp
| | | | | A	src/shogun/so/libbmrm.h
| | | | |        
* | | | |   commit 24aad4da08425620b551e68a27bf0af13a6e96dd
|\ \ \ \ \  Merge: 43ea7ab b1dd170
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Jun 19 10:31:29 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #580 from iglesias/so
| | | | | |     
| | | | | |     Refactored SO framework
| | | | | |       
| * | | | | commit b1dd170e556cff6be001b6687316dd609e594459
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 18 08:47:47 2012 +0200
| | | | | | 
| | | | | |     ~ move files from so to structure
| | | | | | 
| | | | | | M	.gitignore
| | | | | | D	src/interfaces/modular/SO.i
| | | | | | D	src/interfaces/modular/SO_includes.i
| | | | | | M	src/interfaces/modular/Structure.i
| | | | | | M	src/interfaces/modular/Structure_includes.i
| | | | | | M	src/interfaces/modular/modshogun.i
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | | | | | M	src/shogun/machine/StructuredOutputMachine.h
| | | | | | D	src/shogun/so/MulticlassModel.cpp
| | | | | | D	src/shogun/so/MulticlassModel.h
| | | | | | D	src/shogun/so/MulticlassSOLabels.cpp
| | | | | | D	src/shogun/so/MulticlassSOLabels.h
| | | | | | D	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | D	src/shogun/so/PrimalMosekSOSVM.h
| | | | | | D	src/shogun/so/StructuredModel.cpp
| | | | | | D	src/shogun/so/StructuredModel.h
| | | | | | A	src/shogun/structure/MulticlassModel.cpp
| | | | | | A	src/shogun/structure/MulticlassModel.h
| | | | | | A	src/shogun/structure/MulticlassSOLabels.cpp
| | | | | | A	src/shogun/structure/MulticlassSOLabels.h
| | | | | | A	src/shogun/structure/PrimalMosekSOSVM.cpp
| | | | | | A	src/shogun/structure/PrimalMosekSOSVM.h
| | | | | | A	src/shogun/structure/StructuredModel.cpp
| | | | | | A	src/shogun/structure/StructuredModel.h
| | | | | |       
| * | | | | commit 5e562ebf82251370fa2fa35e85118bfa98d77f9d
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 18 07:24:33 2012 +0200
| | | | | | 
| | | | | |     ~ minor fixes in CMosek
| | | | | | 
| | | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | | |       
| * | | | | commit 39cdd19f16371a851c4f56bece6eba56a19667ab
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 18 07:22:28 2012 +0200
| | | | | | 
| | | | | |     ~ to stop using hinge loss improve results in multiclass example
| | | | | | 
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | |       
| * | | | | commit 07655b9f36ed88f60164f42f2aa44e3d346e2656
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 15 15:40:47 2012 +0200
| | | | | | 
| | | | | |     + SO multiclass classification libshogun example
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/so_multiclass.cpp
| | | | | |       
| * | | | | commit d3abf5ec1d3b006df327d9a99a169e272036b784
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 15 15:38:55 2012 +0200
| | | | | | 
| | | | | |     + add slacks member to PrimalMosekSOSVM
| | | | | | 
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.h
| | | | | |       
| * | | | | commit a851b0bce7d8558fdb8ae94da1af0598f977265c
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 15 15:03:09 2012 +0200
| | | | | | 
| | | | | |     * minor bug fix saving the max score
| | | | | | 
| | | | | | M	src/shogun/so/MulticlassModel.cpp
| | | | | |       
| * | | | | commit 568d7aa7acb654709edb3a20432e207dfe99ba1e
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 15 15:00:41 2012 +0200
| | | | | | 
| | | | | |     * minor doc fix
| | | | | | 
| | | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | | |       
| * | | | | commit 90d602e51f476bd9024300c76324467425b71402
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 15 14:59:18 2012 +0200
| | | | | | 
| | | | | |     + getter for weight vector in LinearSOMachine
| | | | | | 
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | | | | |       
| * | | | | commit 98597b3e517abf6314409a7b810a972cc16b371b
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 19:46:09 2012 +0200
| | | | | | 
| | | | | |     + class declaration for modular interfaces
| | | | | | 
| | | | | | M	src/shogun/machine/StructuredOutputMachine.h
| | | | | |       
| * | | | | commit 497a4194ece3a14dd60811580f44f0d98c731d5b
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 19:23:52 2012 +0200
| | | | | | 
| | | | | |     * fixes due to changes in Math methods
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | | | M	src/shogun/so/MulticlassModel.cpp
| | | | | | M	src/shogun/so/MulticlassSOLabels.cpp
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | |       
| * | | | | commit 1d5e0bae37c5575630c81ff2ab5e9b85aa618202
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:31:14 2012 +0200
| | | | | | 
| | | | | |     + additions in SWIG files to use SO in modular
| | | | | | 
| | | | | | M	.gitignore
| | | | | | M	src/interfaces/modular/Features.i
| | | | | | M	src/interfaces/modular/Features_includes.i
| | | | | | M	src/interfaces/modular/Library.i
| | | | | | M	src/interfaces/modular/Library_includes.i
| | | | | | A	src/interfaces/modular/Loss.i
| | | | | | A	src/interfaces/modular/Loss_includes.i
| | | | | | M	src/interfaces/modular/SO.i
| | | | | | M	src/interfaces/modular/SO_includes.i
| | | | | | M	src/interfaces/modular/modshogun.i
| | | | | |       
| * | | | | commit f3605edfcc2fe12a13fdbde87699d081d671cc15
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:27:55 2012 +0200
| | | | | | 
| | | | | |     ~ minor changes in multiclass model and labels
| | | | | | 
| | | | | | M	src/shogun/so/MulticlassModel.cpp
| | | | | | M	src/shogun/so/MulticlassModel.h
| | | | | | M	src/shogun/so/MulticlassSOLabels.cpp
| | | | | |       
| * | | | | commit b8561ea68738eb25209b83f04474e1a283719012
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:23:25 2012 +0200
| | | | | | 
| | | | | |     * bug fixes in variables' bounds and + display problem method
| | | | | | 
| | | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | | | M	src/shogun/mathematics/Mosek.h
| | | | | |       
| * | | | | commit 6fb10208757574a5fae98681151db589ce5ed42d
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:18:59 2012 +0200
| | | | | | 
| | | | | |     + setters and - apply methods in SOMachine
| | | | | | 
| | | | | | M	src/shogun/machine/StructuredOutputMachine.cpp
| | | | | | M	src/shogun/machine/StructuredOutputMachine.h
| | | | | |       
| * | | | | commit ce834f323bc239cbe6979b4160cccd1949472082
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:17:59 2012 +0200
| | | | | | 
| | | | | |     + problem type structured and + apply_structured in Machine
| | | | | | 
| | | | | | M	src/shogun/machine/Machine.cpp
| | | | | | M	src/shogun/machine/Machine.h
| | | | | |       
| * | | | | commit 3ba16d87005645140c2f92d268b11a0a2d319150
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 18:17:04 2012 +0200
| | | | | | 
| | | | | |     ~ DotFeatures instead of Features and + apply in LinearSOMachine
| | | | | | 
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.h
| | | | | |       
| * | | | | commit c4e3d6e1803281a5708df66d5269e00ec75d205d
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 11 17:45:21 2012 +0200
| | | | | | 
| | | | | |     + new methods in SO labels and minor changes in SO model
| | | | | | 
| | | | | | M	src/shogun/labels/StructuredLabels.cpp
| | | | | | M	src/shogun/labels/StructuredLabels.h
| | | | | | M	src/shogun/so/StructuredModel.cpp
| | | | | | M	src/shogun/so/StructuredModel.h
| | | | | |       
| * | | | | commit f7fa38264cc93615218099c184e87c66656cdf43
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 8 03:16:18 2012 +0200
| | | | | | 
| | | | | |     + multiclass classification SO case of use
| | | | | | 
| | | | | | A	src/shogun/so/MulticlassModel.cpp
| | | | | | A	src/shogun/so/MulticlassModel.h
| | | | | | A	src/shogun/so/MulticlassSOLabels.cpp
| | | | | | A	src/shogun/so/MulticlassSOLabels.h
| | | | | |       
| * | | | | commit b5510c4fe9ed7e90bedc55cc1d6faed40a5d204e
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 8 03:15:30 2012 +0200
| | | | | | 
| | | | | |     ~ minor updates in StructuredLabels and StructuredData
| | | | | | 
| | | | | | M	src/shogun/labels/StructuredLabels.cpp
| | | | | | M	src/shogun/labels/StructuredLabels.h
| | | | | | M	src/shogun/lib/StructuredData.cpp
| | | | | | M	src/shogun/lib/StructuredData.h
| | | | | |       
| * | | | | commit fd4066daa68ab19a1acbebee3b633d341987bfa6
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 8 03:14:43 2012 +0200
| | | | | | 
| | | | | |     ~ new design for structured model
| | | | | | 
| | | | | | M	src/interfaces/modular/SO.i
| | | | | | M	src/interfaces/modular/SO_includes.i
| | | | | | D	src/shogun/so/ArgMaxFunction.cpp
| | | | | | D	src/shogun/so/ArgMaxFunction.h
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | D	src/shogun/so/StructuredLossFunction.cpp
| | | | | | D	src/shogun/so/StructuredLossFunction.h
| | | | | | M	src/shogun/so/StructuredModel.cpp
| | | | | | M	src/shogun/so/StructuredModel.h
| | | | | |       
| * | | | | commit 29ec867cb09b1916539c4a82eee735cce076d410
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Wed Jun 6 17:50:13 2012 +0200
| | | | | | 
| | | | | |     + complete implementation of the SO-SVM training algorithm, UNTESTED
| | | | | | 
| | | | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | | | M	src/shogun/mathematics/Mosek.cpp
| | | | | | M	src/shogun/mathematics/Mosek.h
| | | | | | M	src/shogun/so/ArgMaxFunction.h
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.h
| | | | | |       
| * | | | | commit c90be5b2583decefeddd045487d18625d89de7e7
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 4 14:24:30 2012 +0200
| | | | | | 
| | | | | |     + Mosek integration and ~ updates in PrimalMosekSOSVM algorithm
| | | | | | 
| | | | | | A	src/shogun/mathematics/Mosek.cpp
| | | | | | A	src/shogun/mathematics/Mosek.h
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | M	src/shogun/so/PrimalMosekSOSVM.h
| | | | | |       
| * | | | | commit f4b9ea2e97f363c3951c9af5bccbfffe1cfd34df
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 4 14:23:06 2012 +0200
| | | | | | 
| | | | | |     ~ minor changes in StructuredModel and rename ArgMaxFunction
| | | | | | 
| | | | | | D	src/shogun/so/ArgMaxFuncion.cpp
| | | | | | A	src/shogun/so/ArgMaxFunction.cpp
| | | | | | M	src/shogun/so/ArgMaxFunction.h
| | | | | | M	src/shogun/so/StructuredModel.cpp
| | | | | | M	src/shogun/so/StructuredModel.h
| | | | | |       
| * | | | | commit fb017ab9c25ea6b1bce96c84392fbdbe970debdf
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Mon Jun 4 14:20:37 2012 +0200
| | | | | | 
| | | | | |     + count non-zero elements method in Math
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | |       
| * | | | | commit eb5443fbb8557562923ea6f6053f8e1108942ed2
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 1 13:27:06 2012 +0200
| | | | | | 
| | | | | |     + PrimalMosekSOSVM
| | | | | | 
| | | | | | M	src/shogun/base/class_list.cpp.py
| | | | | | A	src/shogun/so/PrimalMosekSOSVM.cpp
| | | | | | A	src/shogun/so/PrimalMosekSOSVM.h
| | | | | |       
| * | | | | commit 76a7076506cc568ff9b08d8532e06ff95b591dae
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 1 13:23:11 2012 +0200
| | | | | | 
| | | | | |     + SWIG for SO in modular
| | | | | | 
| | | | | | M	.gitignore
| | | | | | A	src/interfaces/modular/SO.i
| | | | | | A	src/interfaces/modular/SO_includes.i
| | | | | | M	src/interfaces/modular/modshogun.i
| | | | | |       
| * | | | | commit aab71a2bf078c429241e47576769266025c576c1
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 1 13:18:52 2012 +0200
| | | | | | 
| | | | | |     + new structure in StructuredModel with classes and no pointer functions
| | | | | | 
| | | | | | A	src/shogun/so/ArgMaxFuncion.cpp
| | | | | | A	src/shogun/so/ArgMaxFunction.h
| | | | | | A	src/shogun/so/StructuredLossFunction.cpp
| | | | | | A	src/shogun/so/StructuredLossFunction.h
| | | | | | M	src/shogun/so/StructuredModel.cpp
| | | | | | M	src/shogun/so/StructuredModel.h
| | | | | |       
| * | | | | commit 26dfa967fa6bad00a941fc706421366089570369
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 1 13:17:39 2012 +0200
| | | | | | 
| | | | | |     - VanillaSOMachine due to renaming
| | | | | | 
| | | | | | D	src/shogun/so/VanillaStructuredOutputMachine.cpp
| | | | | | D	src/shogun/so/VanillaStructuredOutputMachine.h
| | | | | |       
| * | | | | commit 49f6903120a4ca6c16bb91c77008abd89bfb3b1b
| | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | Date:   Fri Jun 1 13:15:53 2012 +0200
| | | | | | 
| | | | | |     + weight vector member in LinearSOMachine
| | | | | | 
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | | | | | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | | | | |         
* | | | | |   commit 43ea7ab966a4a457752c9ca2f37077feaa3358fc
|\ \ \ \ \ \  Merge: aa9ad6a b89a58b
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Tue Jun 19 06:49:02 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #588 from cwidmer/master
| | | | | | |     
| | | | | | |     syntactic sugar for SGSparseVector
| | | | | | |        
| * | | | | | commit b89a58b36a0d74ab3a5eb70423832528848c33a6
| | | | | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | | | Date:   Tue Jun 19 04:12:36 2012 +0200
| | | | | | | 
| | | | | | |     some clean-up
| | | | | | | 
| | | | | | | M	src/shogun/lib/SGSparseVector.h
| | | | | | | M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | | | |        
| * | | | | | commit b5c22d69b9ffa0402b1b2386007bc12dbd55bbec
| | | | | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | | | Date:   Tue Jun 19 04:07:20 2012 +0200
| | | | | | | 
| | | | | | |     updated type map for octave to use new index map
| | | | | | | 
| | | | | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | | | |        
| * | | | | | commit 59068d620c29a44bcff2894fd1e7e772aa7265e1
|/ / / / / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | |   Date:   Mon Jun 18 21:36:39 2012 +0200
| | | | | |   
| | | | | |       extended SGSparseVector to make items accessible with operator[]
| | | | | |       at the cost of increased memory requirements. Adapted typemap for python_modular.
| | | | | |       Made use of this extension in MTL DCD solver.
| | | | | |   
| | | | | |   M	src/interfaces/python_modular/swig_typemaps.i
| | | | | |   M	src/shogun/lib/SGSparseVector.h
| | | | | |   M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | | |   M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | | | |         
* | | | | |   commit aa9ad6a30c9e4cb08aec27bdf00c39e4332834be
|\ \ \ \ \ \  Merge: ccfeb3a 0159ce6
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Jun 18 12:45:56 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #587 from kmcquisten/master
| | | | | | |     
| | | | | | |     Kernel normalizer references fix
| | | | | | |        
| * | | | | | commit 0159ce6ed5c5d3c998dd857c698924ccbf698f30
|/ / / / / /  Author: Kyle <kmcquisten@gmail.com>
| | | | | |   Date:   Mon Jun 18 14:39:48 2012 -0500
| | | | | |   
| | | | | |       Fixed broken references to kernel normalizer headers, which have been moved
| | | | | |       to kernel/normalize
| | | | | |   
| | | | | |   M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | |   M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | |   M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | |   M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | |   M	src/shogun/kernel/Kernel.cpp
| | | | | |   M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | |   M	src/shogun/kernel/OligoStringKernel.cpp
| | | | | |   M	src/shogun/kernel/PolyKernel.cpp
| | | | | |   M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | |   M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | |   M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | |   M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | |   M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | |   M	src/shogun/multiclass/ScatterSVM.cpp
| | | | | |   M	src/shogun/ui/GUIKernel.cpp
| | | | | |       
* | | | | | commit ccfeb3a5f5777df31e8608b29913678aba59d8ec
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Jun 18 20:51:49 2012 +0400
| | | | | | 
| | | | | |     Added NLOPT detection
| | | | | | 
| | | | | | M	src/configure
| | | | | |       
* | | | | | commit 4ce351474a2a180174716d82cb50b8b51c2546a8
|/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Mon Jun 18 20:40:32 2012 +0400
| | | | |   
| | | | |       Added CSignal handling to MulticlassLibLinear
| | | | |   
| | | | |   M	src/shogun/lib/external/shogun_liblinear.cpp
| | | | |   M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | | | |      
* | | | | commit 9a1b7ae3ef98d5349f91d129bc3b0f31b385b473
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 18 04:30:15 2012 +0400
| | | | | 
| | | | |     Fixed octave compilation
| | | | | 
| | | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | |      
* | | | | commit 1b86df60e6e68f5cb76a4022d66c3700b1b8a6dc
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 18 04:20:03 2012 +0400
| | | | | 
| | | | |     Enforced parallel to use one thread in case of directors
| | | | | 
| | | | | M	src/shogun/distance/DirectorDistance.h
| | | | | M	src/shogun/kernel/DirectorKernel.h
| | | | |      
* | | | | commit 70d625965d25a921425ab56a9688ff61a7d3fd50
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 18 04:02:27 2012 +0400
| | | | | 
| | | | |     Moved normalizers to special directory in kernels
| | | | | 
| | | | | M	src/interfaces/modular/Kernel.i
| | | | | M	src/interfaces/modular/Kernel_includes.i
| | | | | M	src/interfaces/modular/Machine.i
| | | | | D	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | | | | D	src/shogun/kernel/DiceKernelNormalizer.h
| | | | | D	src/shogun/kernel/FirstElementKernelNormalizer.h
| | | | | D	src/shogun/kernel/IdentityKernelNormalizer.h
| | | | | M	src/shogun/kernel/Kernel.h
| | | | | D	src/shogun/kernel/KernelNormalizer.h
| | | | | D	src/shogun/kernel/RidgeKernelNormalizer.h
| | | | | D	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | D	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | | | D	src/shogun/kernel/TanimotoKernelNormalizer.h
| | | | | D	src/shogun/kernel/VarianceKernelNormalizer.h
| | | | | D	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/AvgDiagKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/DiceKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/FirstElementKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/IdentityKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/KernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/RidgeKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/ScatterKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/SqrtDiagKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/TanimotoKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/VarianceKernelNormalizer.h
| | | | | A	src/shogun/kernel/normalize/ZeroMeanCenterKernelNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelMklNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelPlifNormalizer.h
| | | | | M	src/shogun/transfer/multitask/MultitaskKernelTreeNormalizer.h
| | | | |        
* | | | |   commit c3bfbbe6d23b42a15429cf4864fe0be87473a9d3
|\ \ \ \ \  Merge: afe730c d48a682
| | |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Mon Jun 18 02:03:10 2012 +0400
| | | | |   
| | | | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | | |      
| * | | | commit d48a6827a1dd35ea0709643ad5d3cb3ad708feb8
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 18 01:57:37 2012 +0400
| | | | | 
| | | | |     Added multitask group regression example
| | | | | 
| | | | | A	examples/undocumented/python_modular/transfer_multitask_group_regression.py
| | | | |      
| * | | | commit 058cc0806bf5b3fe89e79ba106c53b6caa313b68
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 18 01:48:21 2012 +0400
| | | | | 
| | | | |     Few fixes for SLEPs MT LS
| | | | | 
| | | | | M	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | |        
* | | | |   commit afe730c78f4f9218666400bebb32e99d00f87ac3
|\ \ \ \ \  Merge: 740c2c5 f621fdf
| |/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Sun Jun 17 02:06:56 2012 +0400
| | | | |   
| | | | |       Merged SLEP updates
| | | | |      
| * | | | commit f621fdfd24ce26b2cc05e5254c3e00ca28673ad2
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Jun 17 02:04:04 2012 +0400
| | | | | 
| | | | |     Updated TaskGroup, added train routines for MultitaskLS regression and fixed some bugs in SLEP ported code
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/transfer_multitasklsregression.cpp
| | | | | M	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | | M	src/shogun/lib/slep/slep_options.h
| | | | | D	src/shogun/lib/slep/slep_tree_lsr.cpp
| | | | | D	src/shogun/lib/slep/slep_tree_lsr.h
| | | | | M	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | | | M	src/shogun/machine/SLEPMachine.cpp
| | | | | M	src/shogun/machine/SLEPMachine.h
| | | | | M	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | | | M	src/shogun/transfer/multitask/TaskGroup.cpp
| | | | | M	src/shogun/transfer/multitask/TaskGroup.h
| | | | | M	src/shogun/transfer/multitask/TaskRelation.h
| | | | | M	src/shogun/transfer/multitask/TaskTree.h
| | | | |      
* | | | | commit 740c2c5a51ce3bafc6b388c109cd8df30fcdca49
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Jun 16 02:20:40 2012 +0200
| | | | | 
| | | | |     include amsmath etc when building latex doxygen doc
| | | | | 
| | | | | M	doc/Doxyfile
| | | | | M	doc/Doxyfile_cn
| | | | |        
* | | | |   commit f3eb34d9626c69c502052a4edd67abc8563f6792
|\ \ \ \ \  Merge: 8d374f1 30c471d
| |/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Sat Jun 16 04:03:54 2012 +0400
| | | | |   
| | | | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | | |      
| * | | | commit 30c471db771306dfbf678d168fa6837d96d1e09d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Jun 16 03:55:50 2012 +0400
| | | | | 
| | | | |     Added task weighting
| | | | | 
| | | | | M	src/shogun/transfer/multitask/Task.cpp
| | | | | M	src/shogun/transfer/multitask/Task.h
| | | | | M	src/shogun/transfer/multitask/TaskTree.cpp
| | | | | M	src/shogun/transfer/multitask/TaskTree.h
| | | | |        
* | | | |   commit 8d374f18a141c74c9097a27b19d643b5b966f257
|\ \ \ \ \  Merge: 6b605bf a1cbb5a
| |/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Sat Jun 16 03:23:24 2012 +0400
| | | | |   
| | | | |       Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | | |      
| * | | | commit a1cbb5a15ebe239efaa3849a9ffe3ec87b1cc964
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Jun 16 03:20:39 2012 +0400
| | | | | 
| | | | |     Refactored SLEP multitask
| | | | | 
| | | | | M	src/interfaces/modular/Regression.i
| | | | | M	src/interfaces/modular/Regression_includes.i
| | | | | M	src/interfaces/modular/Transfer.i
| | | | | M	src/interfaces/modular/Transfer_includes.i
| | | | | D	src/shogun/lib/IndicesTree.cpp
| | | | | D	src/shogun/lib/IndicesTree.h
| | | | | A	src/shogun/lib/slep/slep_mt_lsr.cpp
| | | | | A	src/shogun/lib/slep/slep_mt_lsr.h
| | | | | M	src/shogun/lib/slep/slep_options.h
| | | | | D	src/shogun/regression/FeatureTreeLeastSquaresRegression.cpp
| | | | | D	src/shogun/regression/FeatureTreeLeastSquaresRegression.h
| | | | | A	src/shogun/transfer/multitask/MultitaskLSRegression.cpp
| | | | | A	src/shogun/transfer/multitask/MultitaskLSRegression.h
| | | | | D	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | | | D	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| | | | | A	src/shogun/transfer/multitask/Task.cpp
| | | | | A	src/shogun/transfer/multitask/Task.h
| | | | | A	src/shogun/transfer/multitask/TaskGroup.cpp
| | | | | A	src/shogun/transfer/multitask/TaskGroup.h
| | | | | A	src/shogun/transfer/multitask/TaskRelation.h
| | | | | A	src/shogun/transfer/multitask/TaskTree.cpp
| | | | | A	src/shogun/transfer/multitask/TaskTree.h
| | | | |      
* | | | | commit 6b605bffb93c8d02621aeab5cf3f1df8a928d1be
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Jun 16 00:15:01 2012 +0400
| | | | | 
| | | | |     Made SparseMatrix SGReferencedData
| | | | | 
| | | | | M	src/shogun/features/SparseFeatures.cpp
| | | | | M	src/shogun/lib/SGSparseMatrix.h
| | | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |        
* | | | |   commit 861c682c9519eea632effcdf9f205406dbbdd575
|\ \ \ \ \  Merge: 5477eb7 6b71ab4
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Fri Jun 15 11:43:27 2012 -0700
| | | | | | 
| | | | | |     Merge pull request #586 from cwidmer/master
| | | | | |     
| | | | | |     sparsify MTL_DCD solver
| | | | | |       
| * | | | | commit 6b71ab49a779605a1416b69d55bbfe43c70dcc6d
| | | | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | | Date:   Fri Jun 15 20:33:33 2012 +0200
| | | | | | 
| | | | | |     replaced SGMatrix with SGSparseMatrix to handle the case of sparse task similarities
| | | | | | 
| | | | | | M	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | | | M	src/shogun/transfer/multitask/LibLinearMTL.h
| | | | | |       
| * | | | | commit 5423ead4de9a0304087112c027b7795fb0c0fa14
|/ / / / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | |   Date:   Fri Jun 15 17:29:53 2012 +0200
| | | | |   
| | | | |       included std_vector typemap while avoiding java compile error
| | | | |   
| | | | |   M	src/.generate_link_dependencies.py
| | | | |   M	src/interfaces/modular/SGBase.i
| | | | |        
* | | | |   commit 5477eb70b6bd2d8edd5e5bb09c40934629776bda
|\ \ \ \ \  Merge: 09518d6 33a2582
| |_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Thu Jun 14 09:45:27 2012 -0700
| | | | |   
| | | | |       Merge pull request #584 from cwidmer/master
| | | | |       
| | | | |       a few fixes towards getting shogun to compile again with cplex enabled
| | | | |      
| * | | | commit 33a2582f246a64d1544914777ec7f64e561fce74
|/ / / /  Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | |   Date:   Thu Jun 14 17:12:00 2012 +0200
| | | |   
| | | |       fixed a few problems with the new label architecture in CPLEX dependent classes
| | | |   
| | | |   M	src/shogun/classifier/LPM.cpp
| | | |   M	src/shogun/classifier/SubGradientLPM.cpp
| | | |   M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | |       
* | | |   commit 09518d6f3a24d352ec9f6148ff9f475b36dc55f9
|\ \ \ \  Merge: 86919c0 7113d94
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 10:03:11 2012 -0700
| | | | | 
| | | | |     Merge pull request #583 from karlnapf/master
| | | | |     
| | | | |     buxfixes and new tests
| | | | |      
| * | | | commit 7113d9476695fa0abb22c2859a34c595afe2947d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:58:45 2012 +0100
| | | | | 
| | | | |     added test for gamma threshold method
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | |      
| * | | | commit 055ac5454bd008a0172130da4cfe79535f7c57a3
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:58:32 2012 +0100
| | | | | 
| | | | |     removed comments that imply false security (now we got tests)
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit 3073875367f37b1a5b20ac8dcbcd1f975d4d36b6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:24:59 2012 +0100
| | | | | 
| | | | |     typo
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | |      
| * | | | commit a074f4dbd5d071cd490d5598fa7e3084f1fb6016
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:23:50 2012 +0100
| | | | | 
| | | | |     added a test for the spectrum based threshold computation
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | |      
| * | | | commit 41556b4564eec75168a47199bd1a879e5019b430
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:23:33 2012 +0100
| | | | | 
| | | | |     fixed a cast error
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit 306e645d2b1a6dde6386dd51ad891fa15fbdf7c0
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 17:23:18 2012 +0100
| | | | | 
| | | | |     bugfix- method returned wrong values
| | | | | 
| | | | | M	src/shogun/mathematics/Math.h
| | | | |      
| * | | | commit f588d737036292b645faa79fcb29b799f525c03d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 13 16:37:31 2012 +0100
| | | | | 
| | | | |     finished test for bootstrapping
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | |      
| * | | | commit 8ab162e61b55b4021ffe12f9e8c9d4a8350a3770
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jun 13 16:36:41 2012 +0100
| | | |   
| | | |       code beauty
| | | |   
| | | |   M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | |       
* | | |   commit 86919c0477ab76c2b799413a348c133477b2f148
|\ \ \ \  Merge: df58c63 6585589
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 12 10:33:33 2012 -0700
| | | | | 
| | | | |     Merge pull request #581 from karlnapf/master
| | | | |     
| | | | |     bugfixes and new tests for quadratic mmd
| | | | |      
| * | | | commit 6585589a6a2be950ba41b69aa4b1e1d19a027f21
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 12 18:30:14 2012 +0100
| | | | | 
| | | | |     first set of tests/examples for quadratic time mmd (to be expanded)
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/statistics_quadratic_time_mmd.cpp
| | | | |      
| * | | | commit 8040b986046de6b408bd032a9506f18b9d24e434
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 12 18:29:49 2012 +0100
| | | | | 
| | | | |     bugfixes
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit 938e0d60e70563b25630e3a8581c7adfed360817
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 12 18:29:34 2012 +0100
| | | | | 
| | | | |     moved some code outside loop to gain performance
| | | | | 
| | | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | |      
| * | | | commit 9148cab944bdefe12e7b08c5c866567939d3fdf7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 12 18:29:08 2012 +0100
| | | | | 
| | | | |     removed debug print
| | | | | 
| | | | | M	src/shogun/features/SubsetStack.cpp
| | | | |      
| * | | | commit f29bf71f495946109237a621f5c01359014d11d1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 11 17:30:57 2012 +0100
| | | | | 
| | | | |     little code cleanup
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit f73c25170d12b10988bd518f7ec7de57c2f00a96
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 11 17:29:45 2012 +0100
| | | | | 
| | | | |     -gamma test is now done in constant space costs
| | | | |     -added comments on wheather kernel matrices have to be stored in memory
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | |      
| * | | | commit 6e3f593a20d9299959de0575157eb1f3f75174ac
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 11 16:44:24 2012 +0100
| | | | | 
| | | | |     and another LAPACK based fix/check
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit f9c13730cf11c49bbc5032b4f41d12988a1c8bda
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 11 16:41:54 2012 +0100
| | | |   
| | | |       fixed a copyright typo
| | | |   
| | | |   M	src/shogun/mathematics/Statistics.h
| | | |     
* | | | commit df58c633e473c80e63812671db27a089e86a4591
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 11 22:09:24 2012 +0400
| | | | 
| | | |     Dropped linadd mkl test example
| | | | 
| | | | D	examples/undocumented/python_modular/mkl_linadd_regression.py
| | | |     
* | | | commit 7cd89645cd0b0a40f449bb8fdb61d2612b7a5f2f
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 11 22:06:46 2012 +0400
| | | | 
| | | |     Added Sparse Inverse Covariance example
| | | | 
| | | | A	examples/undocumented/python_modular/mathematics_sparseinversecovariance_modular.py
| | | |     
* | | | commit 90641c61b7ac0a61dad50a4abfeb7d99d5cf1616
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 11 21:48:19 2012 +0400
| | | | 
| | | |     Made sparse inverse covariance not that verbose
| | | | 
| | | | M	src/shogun/lib/slep/SpInvCoVa/invCov.cpp
| | | |       
* | | |   commit f5163e8bf8f77dfaa1295b7cc2353e5130300985
|\ \ \ \  Merge: 1532e15 c3a67a6
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 11 21:45:28 2012 +0400
| | | | | 
| | | | |     Merge branch 'multiclass' of git://github.com/pluskid/shogun
| | | | |      
| * | | | commit c3a67a6a504e7cf219f916526cf430d8ce83dc38
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 11 15:59:43 2012 +0800
| | | | | 
| | | | |     use SG_SPRINT instead of printf
| | | | | 
| | | | | M	examples/undocumented/libshogun/balanced_conditional_probability_tree.cpp
| | | | | M	examples/undocumented/libshogun/random_conditional_probability_tree.cpp
| | | | | M	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit 8d65eba5fa31a66c9fa9ef3bcb96d42d7f32fd8e
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 10 20:39:52 2012 +0800
| | | | | 
| | | | |     Added comments for paper reference.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit b8e865ec950f88f5dfea721bedb27c85a58a417d
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 10 20:37:20 2012 +0800
| | | | | 
| | | | |     remove debug code.
| | | | | 
| | | | | M	examples/undocumented/libshogun/balanced_conditional_probability_tree.cpp
| | | | | M	examples/undocumented/libshogun/random_conditional_probability_tree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit b8e6ddf5a3876eab1de26b3dd4765b09f3cb9d5b
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 10 20:20:11 2012 +0800
| | | | | 
| | | | |     Added example for balanced CPT construction.
| | | | | 
| | | | | A	examples/undocumented/libshogun/balanced_conditional_probability_tree.cpp
| | | | | M	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.h
| | | | |      
| * | | | commit 8f891b2c286d00c3c688d6c4aa2ea3494565fae7
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 10 20:13:43 2012 +0800
| | | | | 
| | | | |     Balanced CPT construction.
| | | | | 
| | | | | A	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.cpp
| | | | | A	src/shogun/multiclass/tree/BalancedConditionalProbabilityTree.h
| | | | |        
* | | | |   commit 1532e15cc4491d764e071bc9de00f25336a008d0
|\ \ \ \ \  Merge: 51c3b36 0e9be8c
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Mon Jun 11 06:24:11 2012 -0700
| | | | |   
| | | | |       Merge pull request #579 from karlnapf/master
| | | | |       
| | | | |       quickfix
| | | | |      
| * | | | commit 0e9be8c71e2f2f8579bee38da9888c8f239fa434
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 11 14:23:13 2012 +0100
| | | | | 
| | | | |     another check for LAPACK
| | | | | 
| | | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | |      
| * | | | commit 27f5fd101a69f28bb2db44bf679877a0dad21aad
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 11 14:19:27 2012 +0100
| | | |   
| | | |       added lapack check for eigenspectrum based test to solve compile error
| | | |       when not having LAPACK installed
| | | |   
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |       
* | | |   commit 51c3b36c869b59ed056f213dc3c3a0ffba32a86c
|\ \ \ \  Merge: bc2cf3e 60a7f70
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Sun Jun 10 12:49:03 2012 -0700
| | | |   
| | | |       Merge pull request #578 from gsomix/director_classes
| | | |       
| | | |       Preliminary design of DirectorKernelMachine and DirectorLinearMachine
| | | |     
| * | | commit 60a7f702c7c7b013b9bd74876c50ee34405cc056
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sun Jun 10 23:44:29 2012 +0400
| | | | 
| | | |     fixed returns in train_function
| | | | 
| | | | M	src/shogun/machine/DirectorKernelMachine.h
| | | | M	src/shogun/machine/DirectorLinearMachine.h
| | | |     
| * | | commit 1914e8697e4fdd01a2af49bdd380cdb91af61efe
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sun Jun 10 22:27:36 2012 +0400
| | | | 
| | | |     new classes added to modular
| | | | 
| | | | M	src/interfaces/modular/Classifier.i
| | | | M	src/interfaces/modular/Classifier_includes.i
| | | | M	src/shogun/machine/Machine.h
| | | |     
| * | | commit 0df5d4d6076cba372ea030266ddd0c3ee30f82e9
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sun Jun 10 22:26:51 2012 +0400
| | | | 
| | | |     added DirectorLinearMachine
| | | | 
| | | | A	src/shogun/machine/DirectorLinearMachine.h
| | | |     
| * | | commit b01c399dd0fa0745840d5fe40b7c930447f82b3a
|/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | |   Date:   Sun Jun 10 22:26:39 2012 +0400
| | |   
| | |       added DirectorKernelMachine
| | |   
| | |   A	src/shogun/machine/DirectorKernelMachine.h
| | |    
* | | commit bc2cf3e82c0416c3a2334398d401a5655e015a83
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 10 06:31:08 2012 +0400
| | | 
| | |     Added sparse inverse covariance estimator
| | | 
| | | M	src/interfaces/modular/Mathematics.i
| | | M	src/interfaces/modular/Mathematics_includes.i
| | | M	src/shogun/lib/slep/SpInvCoVa/invCov.cpp
| | | M	src/shogun/lib/slep/SpInvCoVa/invCov.h
| | | A	src/shogun/mathematics/SparseInverseCovariance.cpp
| | | A	src/shogun/mathematics/SparseInverseCovariance.h
| | |    
* | | commit b979aaeca4c9b74de0b323a9ae6a11c5b8261ab3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 9 23:11:50 2012 +0200
| | | 
| | |     fix fisher2x3 example and include statistics in maths module
| | | 
| | | M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | | M	src/interfaces/modular/Mathematics.i
| | | M	src/interfaces/modular/Mathematics_includes.i
| | |    
* | | commit 068eef5f0bc1ba84b39d415ef1fa50361f5b2100
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 9 23:06:06 2012 +0200
| | | 
| | |     add missing include to fix multiclass machine swig interfaces
| | | 
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/interfaces/modular/Multiclass_includes.i
| | |    
* | | commit 89d623eb3d21e48778255031223d91b9e3ff43d5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 9 22:59:15 2012 +0200
| | | 
| | |     fix dynprog example
| | | 
| | | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| | |    
* | | commit 1f37d997fad13a75fd5b381ca2b07a689ef5171c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 9 22:20:59 2012 +0200
| | | 
| | |     another attempt to fix linadd + mkl + svr
| | | 
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | |    
* | | commit 062b1f4e8595716260355154b2edfafb6908b4b0
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 9 21:36:02 2012 +0200
| | | 
| | |     convert examples to use new CMath/SGVector/SGMatrix split
| | | 
| | | M	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| | | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| | | M	examples/undocumented/libshogun/base_map_parameters.cpp
| | | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | M	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
| | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | M	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | | M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | | M	examples/undocumented/libshogun/mathematics_lapack.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	examples/undocumented/libshogun/serialization_basic_tests.cpp
| | | M	examples/undocumented/libshogun/splitting_standard_crossvalidation.cpp
| | | M	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| | |      
* | |   commit bac8cc020b5ffd32734ded796c3d7cf799ea07fe
|\ \ \  Merge: 06aee69 cc95465
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 23:32:19 2012 +0400
| | | | 
| | | |     Merge branch 'slep' of git://github.com/lisitsyn/shogun
| | | |     
| * | | commit cc954653510a916a77f5884a08948e647da798d1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 23:31:25 2012 +0400
| | | | 
| | | |     Added num of nodes counting in indices tree
| | | | 
| | | | M	src/shogun/lib/IndicesTree.h
| | | | M	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | |     
| * | | commit 92cd89abd1f965a815159d8c2ca4a69317b79733
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 00:33:15 2012 +0400
| | | | 
| | | |     Updated IndicesTree
| | | | 
| | | | M	src/shogun/lib/IndicesTree.cpp
| | | | M	src/shogun/lib/IndicesTree.h
| | | | M	src/shogun/regression/FeatureTreeLeastSquaresRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | | M	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| | | |     
| * | | commit f209569cb02649f4bdaea4edd663ac0ca6d9d06e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 3 04:33:11 2012 +0400
| | | | 
| | | |     Added SLEP machines
| | | | 
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/interfaces/modular/Transfer.i
| | | | M	src/interfaces/modular/Transfer_includes.i
| | | | A	src/shogun/lib/IndicesTree.cpp
| | | | A	src/shogun/lib/IndicesTree.h
| | | | M	src/shogun/lib/slep/slep_options.h
| | | | M	src/shogun/lib/slep/slep_tree_lsr.cpp
| | | | M	src/shogun/lib/slep/slep_tree_lsr.h
| | | | A	src/shogun/lib/slep/slep_tree_mt_lsr.cpp
| | | | A	src/shogun/lib/slep/slep_tree_mt_lsr.h
| | | | M	src/shogun/lib/slep/tree/altra.cpp
| | | | M	src/shogun/lib/slep/tree/altra.h
| | | | M	src/shogun/lib/slep/tree/general_altra.cpp
| | | | M	src/shogun/lib/slep/tree/general_altra.h
| | | | A	src/shogun/machine/SLEPMachine.cpp
| | | | A	src/shogun/machine/SLEPMachine.h
| | | | A	src/shogun/regression/FeatureTreeLeastSquaresRegression.cpp
| | | | A	src/shogun/regression/FeatureTreeLeastSquaresRegression.h
| | | | A	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.cpp
| | | | A	src/shogun/transfer/multitask/MultitaskLeastSquaresRegression.h
| | | |     
* | | | commit 06aee69247cd9c31037507abf71dc03738195365
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 18:24:04 2012 +0400
| | | | 
| | | |     Added missed close paren to Cplex
| | | | 
| | | | M	src/shogun/mathematics/Cplex.cpp
| | | |     
* | | | commit 7b35a82fe27c12f1adf1e3e04be69efdb7d119d5
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 18:09:31 2012 +0400
| | | | 
| | | |     Some fixes for Cplex
| | | | 
| | | | M	src/shogun/mathematics/Cplex.cpp
| | | | M	src/shogun/mathematics/Cplex.h
| | | |       
* | | |   commit 765d0dd59a7b6ce53449441bad3e7a1947b453bc
|\ \ \ \  Merge: c660f04 2ca6e43
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Jun 9 17:21:36 2012 +0400
| | | | | 
| | | | |     Merge branch 'multiclass' of git://github.com/pluskid/shogun
| | | | |      
| * | | | commit 2ca6e43ad7053600b4f2baf32d54bb6a1ed679f5
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 19:38:35 2012 +0800
| | | | | 
| | | | |     fix random-cpt libshogun example.
| | | | | 
| | | | | M	examples/undocumented/libshogun/random_conditional_probability_tree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit ca2bca9e23779996e932fb6ad9efe372f5253321
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 18:59:28 2012 +0800
| | | | | 
| | | | |     Added debug_print function for tree.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit b22e3bf350680195f1cd1cfb7f56405119f20e5f
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 18:39:26 2012 +0800
| | | | | 
| | | | |     use sigmoid to turn dicision value into probability
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | |      
| * | | | commit 2853b9fa79603e97a2eade879f5859fd0985ce19
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 18:34:36 2012 +0800
| | | | | 
| | | | |     Modify the cpt example code for the new interface.
| | | | | 
| | | | | M	examples/undocumented/libshogun/random_conditional_probability_tree.cpp
| | | | |      
| * | | | commit 57bcf5b3348923f8099db8bf0f17a1ecc494a3d6
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 18:08:53 2012 +0800
| | | | | 
| | | | |     Call stop_train after training.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | |      
| * | | | commit f2fb797a4fa5eb4a7c4d4eea6ba8c594b14436e4
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 17:59:29 2012 +0800
| | | | | 
| | | | |     backup the original Vw CPT.
| | | | | 
| | | | | A	src/shogun/multiclass/tree/VwConditionalProbabilityTree.cpp
| | | | | A	src/shogun/multiclass/tree/VwConditionalProbabilityTree.h
| | | | |      
| * | | | commit 6d3ac21535e88e08bdb94dd53826168135bbc9c9
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 17:59:05 2012 +0800
| | | | | 
| | | | |     change interface of sub-tree deciding in CPT.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.h
| | | | |      
| * | | | commit 7b986e9f487be2a13167ce076182f910816f7450
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 17:58:25 2012 +0800
| | | | | 
| | | | |     use onlineliblinear instead of vw for CPT
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit 248e60b7eb4535daf010f8a99d62b1a3838ecb08
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 17:57:46 2012 +0800
| | | | | 
| | | | |     Added copy constructor for onlineliblinear
| | | | | 
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | | |      
| * | | | commit d07e97d4899fae7c7b5b9c727b4ad97cdd8d8155
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sat Jun 9 11:05:01 2012 +0800
| | | | | 
| | | | |     rename CPT to VwCPT and start working on a CPT with generic linear
| | | | |     machine.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | |      
| * | | | commit 6d666f9d30840dced15b7246c17fe9577a527bcd
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 13:56:58 2012 +0800
| | | | | 
| | | | |     fix vw learning in cpt.
| | | | | 
| | | | | M	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| | | | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | |      
| * | | | commit 2f4ffbc6fa60bbf89afb9d574c62e2f9bf14c76e
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 4 22:47:17 2012 +0800
| | | | | 
| | | | |     Added libshogun example of random CPT.
| | | | | 
| | | | | A	examples/undocumented/libshogun/random_conditional_probability_tree.cpp
| | | | |      
| * | | | commit bbb6ce74baca4e8621801acdd6e836f4db0e79a4
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 4 22:46:58 2012 +0800
| | | | | 
| | | | |     fix bug in CPT predicting.
| | | | | 
| | | | | M	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit 5a6bacff72a9a7a5f157ad03105a7266883c10c9
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 4 21:14:50 2012 +0800
| | | | | 
| | | | |     let CPT being able to traing without set_labels
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit 6bf09ce6ee3eb89cb76d877ab66c086a692becc5
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 4 21:05:41 2012 +0800
| | | | | 
| | | | |     fix compiling warnings of const char*
| | | | | 
| | | | | M	src/shogun/io/StreamingVwFile.cpp
| | | | | M	src/shogun/io/StreamingVwFile.h
| | | | |      
| * | | | commit 9234df6ec10d98ef6b18731b7d53f8bae52314e5
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Mon Jun 4 20:54:03 2012 +0800
| | | | | 
| | | | |     Prediction for CPT.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit ba47a23ba9e5f1541e2fc06cfa3801e5b51d5b29
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 21:20:51 2012 +0800
| | | | | 
| | | | |     Random tree construction for CPT.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | |      
| * | | | commit 52e7b5cc40abac6329e9d9527e679f76c46627bf
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 20:43:12 2012 +0800
| | | | | 
| | | | |     complete CPT skeleton.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | D	src/shogun/multiclass/tree/TreeMachine.cpp
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | | D	src/shogun/multiclass/tree/TreeMachineNode.cpp
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit 66635a12f3a2ca877d5d869f71bc63558401665a
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 20:13:12 2012 +0800
| | | | | 
| | | | |     Added copy constructor for VowpalWabbit
| | | | | 
| | | | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | |      
| * | | | commit 500bf10b400b65b0b624f4cd50bb44361c3056ee
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 15:23:27 2012 +0800
| | | | | 
| | | | |     Skeleton for Conditional Probability Tree.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | | | A	src/shogun/multiclass/tree/ConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | A	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.cpp
| | | | | M	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.cpp
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit bd82ca3c68f9d57dd9a50b6ad446c2540e3a3af2
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 12:02:54 2012 +0800
| | | | | 
| | | | |     derive tree-machine from base-multiclassmachine
| | | | | 
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | |      
| * | | | commit e8f8a95b7a51ba3fef7da170e559b7efaac7d5f5
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 12:02:09 2012 +0800
| | | | | 
| | | | |     Added a simple base class for multiclass machine.
| | | | | 
| | | | | A	src/shogun/machine/BaseMulticlassMachine.cpp
| | | | | A	src/shogun/machine/BaseMulticlassMachine.h
| | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | M	src/shogun/machine/MulticlassMachine.h
| | | | | A	src/shogun/multiclass/tree/RandomConditionalProbabilityTree.h
| | | | |      
| * | | | commit d2f768e4d0e52599f356952d21e1e9b591473922
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 11:46:47 2012 +0800
| | | | | 
| | | | |     fix compile errors.
| | | | | 
| | | | | M	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | M	src/shogun/multiclass/tree/TreeMachine.h
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.cpp
| | | | | M	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit 96e26b9c855c26c5b567ea780983ad1ab868ef23
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Sun Jun 3 11:27:01 2012 +0800
| | | | | 
| | | | |     Added basic stuffs for tree-style classifier.
| | | | | 
| | | | | A	src/shogun/multiclass/tree/ConditionalProbabilityTree.h
| | | | | A	src/shogun/multiclass/tree/TreeMachine.cpp
| | | | | A	src/shogun/multiclass/tree/TreeMachine.h
| | | | | A	src/shogun/multiclass/tree/TreeMachineNode.cpp
| | | | | A	src/shogun/multiclass/tree/TreeMachineNode.h
| | | | |      
| * | | | commit 2876c84735c0d459848e94e87a86b5f19dbffc32
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 17:11:11 2012 +0800
| | | | | 
| | | | |     remove comments.
| | | | | 
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | |      
| * | | | commit 8d1bf3f8d040bb1f1b29e21d9e09c1c4014167e6
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 17:09:48 2012 +0800
| | | | | 
| | | | |     make online-liblinear able to train example-by-example.
| | | | | 
| | | | | M	examples/undocumented/libshogun/streaming_onlineliblinear.cpp
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | | |      
| * | | | commit dd11498df8e0598ed96c33c115c4ca3648b1840f
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 16:45:10 2012 +0800
| | | | | 
| | | | |     Added online liblinear example
| | | | | 
| | | | | A	examples/undocumented/libshogun/streaming_onlineliblinear.cpp
| | | | |      
| * | | | commit c935d22322a006da8604abf2d08e7cd28431f548
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 15:20:26 2012 +0800
| | | | | 
| | | | |     fix compiling warning
| | | | | 
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | | M	src/shogun/io/StreamingAsciiFile.h
| | | | | M	src/shogun/io/StreamingFile.cpp
| | | | | M	src/shogun/io/StreamingFile.h
| | | | |      
| * | | | commit 99c1e587a94b8bc4d7a8ad5fade1dc33ce23b87e
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Thu Jun 7 15:02:21 2012 +0800
| | | | | 
| | | | |     Added more fine-detail interface for onlinelinearmachine
| | | | | 
| | | | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | | | M	src/shogun/machine/OnlineLinearMachine.h
| | | | |      
* | | | | commit c660f04448cfa1fc7fad482065dae912f4aeb646
|/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Sat Jun 9 17:06:10 2012 +0400
| | | |   
| | | |       Updated data
| | | |   
| | | |   M	data
| | | |     
* | | | commit edcd31c4b62070c1dd5b2ec304c4c01d1360f88c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 9 00:38:22 2012 +0200
| | | | 
| | | |     fix compile error in csharp modular
| | | | 
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | |       
* | | |   commit c15f5a5df6b13ed6e41e0f146408fc570dd22b8d
|\ \ \ \  Merge: a85ee05 c983a2d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Jun 9 02:35:51 2012 +0400
| | | | | 
| | | | |     Merge branch 'director_classes' of git://github.com/gsomix/shogun
| | | | |      
| * | | | commit c983a2de4c223d9f6ac78d4a0a3e14a6b6a90756
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Sat Jun 9 00:48:12 2012 +0400
| | | | | 
| | | | |     fix in DirectorDistance example
| | | | | 
| | | | | M	examples/undocumented/python_modular/distance_director_euclidian_modular.py
| | | | |      
| * | | | commit 6d93987ef86c8c9e49e7c67a59323b7ab8d3cb53
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Sat Jun 9 00:45:15 2012 +0400
| | | | | 
| | | | |     added missed methods to DirectorKernel
| | | | | 
| | | | | M	src/shogun/kernel/DirectorKernel.h
| | | | |      
| * | | | commit c9dcf7196301e169a3a8d6f5e3b001d5bb40a547
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Sat Jun 9 00:34:32 2012 +0400
| | | | | 
| | | | |     polymorphic return for shogun::CFeatures*
| | | | | 
| | | | | M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| | | | | D	examples/undocumented/python_modular/kernel_director_modular.py
| | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | |      
| * | | | commit 350d1762fbdf4560d44554b23c457ab0f251127a
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Thu Jun 7 01:09:35 2012 +0400
| | | | | 
| | | | |     added external_features flag for DirectorKernel
| | | | | 
| | | | | M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| | | | | M	src/shogun/kernel/DirectorKernel.h
| | | | |      
| * | | | commit 7ac7b83502dab426195b9c92f2a547f1359f7245
| | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | Date:   Thu Jun 7 01:08:36 2012 +0400
| | | | | 
| | | | |     enabled director for DirectorDistance
| | | | | 
| | | | | A	examples/undocumented/python_modular/distance_director_euclidian_modular.py
| | | | | M	src/interfaces/modular/Distance.i
| | | | | M	src/interfaces/modular/Distance_includes.i
| | | | |      
| * | | | commit 7ce8fc543ec6615b6b93432533a6a3bdcc872ee4
| |/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | |   Date:   Thu Jun 7 01:07:36 2012 +0400
| | | |   
| | | |       added DirectorDistance
| | | |   
| | | |   A	src/shogun/distance/DirectorDistance.h
| | | |   M	src/shogun/distance/Distance.cpp
| | | |   M	src/shogun/distance/Distance.h
| | | |     
* | | | commit a85ee05065eb173453c2bd3f5f7523e16e42d577
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 9 02:31:54 2012 +0400
| | | | 
| | | |     Moved liblinear MTL to transfer folder and undo unnecessary stl includes
| | | | 
| | | | M	src/.generate_link_dependencies.py
| | | | M	src/interfaces/modular/Classifier.i
| | | | M	src/interfaces/modular/Classifier_includes.i
| | | | M	src/interfaces/modular/Transfer.i
| | | | M	src/interfaces/modular/Transfer_includes.i
| | | | D	src/shogun/classifier/svm/LibLinearMTL.cpp
| | | | D	src/shogun/classifier/svm/LibLinearMTL.h
| | | | A	src/shogun/transfer/multitask/LibLinearMTL.cpp
| | | | A	src/shogun/transfer/multitask/LibLinearMTL.h
| | | |     
* | | | commit c29a9b21e3c8f9165fe71084f8662d71a1ef0072
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Jun 9 00:31:18 2012 +0200
| | |   
| | |       fix compile error in java modular
| | |   
| | |   M	src/interfaces/modular/SGBase.i
| | |   M	src/shogun/lib/SGVector.cpp
| | |   M	src/shogun/lib/SGVector.h
| | |    
* | | commit 25d754943716c6539747379b11d572a83311c010
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 8 21:08:55 2012 +0200
| | | 
| | |     hopefully fix b0rken merge attempt in statistics
| | | 
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | |    
* | | commit abe2a85981b5a2416d146bd778a87583c853ce14
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 8 20:48:38 2012 +0200
| | | 
| | |     Clean up CMath: move respective functions to CStatistics, SGVector and SGMatrix
| | | 
| | | M	src/shogun/base/Parameter.h
| | | M	src/shogun/classifier/LDA.cpp
| | | M	src/shogun/classifier/NearestCentroid.cpp
| | | M	src/shogun/classifier/mkl/MKL.cpp
| | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | M	src/shogun/classifier/svm/NewtonSVM.cpp
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | M	src/shogun/clustering/Hierarchical.cpp
| | | M	src/shogun/converter/Isomap.cpp
| | | M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | M	src/shogun/distance/MahalanobisDistance.cpp
| | | M	src/shogun/distributions/Gaussian.cpp
| | | M	src/shogun/distributions/PositionalPWM.cpp
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | M	src/shogun/features/DenseFeatures.cpp
| | | M	src/shogun/features/DotFeatures.cpp
| | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | M	src/shogun/features/HashedWDFeatures.cpp
| | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | M	src/shogun/features/StreamingDenseFeatures.cpp
| | | M	src/shogun/features/StringFeatures.cpp
| | | M	src/shogun/features/StringFileFeatures.cpp
| | | M	src/shogun/features/SubsetStack.cpp
| | | M	src/shogun/features/WDFeatures.cpp
| | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/shogun/labels/MulticlassLabels.cpp
| | | M	src/shogun/lib/BitString.h
| | | M	src/shogun/lib/Compressor.cpp
| | | A	src/shogun/lib/SGMatrix.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | | M	src/shogun/lib/SGVector.cpp
| | | M	src/shogun/lib/SGVector.h
| | | M	src/shogun/lib/external/shogun_liblinear.cpp
| | | M	src/shogun/lib/external/shogun_libsvm.cpp
| | | M	src/shogun/lib/slep/slep_tree_lsr.cpp
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | M	src/shogun/mathematics/Math.cpp
| | | M	src/shogun/mathematics/Math.h
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/multiclass/ConjugateIndex.cpp
| | | M	src/shogun/multiclass/KNN.cpp
| | | M	src/shogun/multiclass/LaRank.cpp
| | | M	src/shogun/multiclass/LaRank.h
| | | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | | M	src/shogun/multiclass/QDA.cpp
| | | M	src/shogun/multiclass/ScatterSVM.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCIHDDecoder.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCSimpleDecoder.cpp
| | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | M	src/shogun/preprocessor/NormOne.cpp
| | | M	src/shogun/preprocessor/PCA.cpp
| | | M	src/shogun/preprocessor/PNorm.cpp
| | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | M	src/shogun/preprocessor/SumOne.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/LeastAngleRegression.cpp
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | | M	src/shogun/so/VanillaStructuredOutputMachine.cpp
| | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | M	src/shogun/ui/GUIHMM.cpp
| | | M	src/shogun/ui/GUILabels.cpp
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
* | | commit f54eb89dd3d808f48bf77255ccebcd7f1b507cb5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jun 8 19:33:09 2012 +0400
| | | 
| | |     Merged code of LibLinearMTL by Chris Widmer
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/AUTHORS
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Classifier_includes.i
| | | M	src/interfaces/modular/SGBase.i
| | | A	src/shogun/classifier/svm/LibLinearMTL.cpp
| | | A	src/shogun/classifier/svm/LibLinearMTL.h
| | | M	src/shogun/classifier/svm/SVMLight.cpp
| | |    
* | | commit ec4f3ef4d277077f21b3b67bf769afc116930e04
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 7 21:14:01 2012 +0400
| | | 
| | |     Updated data
| | | 
| | | M	data
| | |      
* | |   commit 053c114803cae63021549edf1b003c88bd6ba49b
|\ \ \  Merge: 631c3e7 3d309de
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 07:05:32 2012 -0700
| | | | 
| | | |     Merge pull request #575 from karlnapf/master
| | | |     
| | | |     more work on integrating p-value computations for quadratic MMD
| | | |     
| * | | commit 3d309debd5a2f2ec14f05509c474cc40b81a9f0f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 15:03:34 2012 +0100
| | | | 
| | | |     -integrated all p-value methods for quadratic time MMD
| | | |     -documentation updates
| | | |     -changed std values to force user to choose
| | | |     -refactored a bit
| | | | 
| | | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | | |     
| * | | commit b6e2afd9c1e47db8744e033519428b0a5ba5ba27
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jun 7 15:01:47 2012 +0100
| | |   
| | |       added SGVector method for qsort
| | |       added a method to find index where to insert element into sorted vector
| | |   
| | |   M	src/shogun/mathematics/Math.h
| | |      
* | |   commit 631c3e70f6a1900d2761f81ec54221b866973f0d
|\ \ \  Merge: 3abbb99 887d699
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 06:12:03 2012 -0700
| | | | 
| | | |     Merge pull request #574 from karlnapf/master
| | | |     
| | | |     Finished Gamma-based computation of p-value for quadratic time MMD
| | | |     
| * | | commit 887d699c5f4340c08a1e243f7bf224b761bacf39
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jun 7 14:09:49 2012 +0100
| | |   
| | |       finished gamma-based computation of p-value for quadratic MMD
| | |   
| | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | |      
* | |   commit 3abbb992bc53c9150f429291b0db348c934af8ca
|\ \ \  Merge: 45d89d9 13dc395
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 04:20:56 2012 -0700
| | | | 
| | | |     Merge pull request #573 from karlnapf/master
| | | |     
| | | |     updated algolib routines and added new distributions...
| | | |     
| * | | commit 13dc395dedc436fe1ba39617a57f1c2acd9031d0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 12:19:07 2012 +0100
| | | | 
| | | |     added tests for gamma cdf and minor changes
| | | | 
| | | | M	examples/undocumented/libshogun/statistics.cpp
| | | |     
| * | | commit cdc59d5e51691825c576833e0d12f795dbac789e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 7 12:18:00 2012 +0100
| | | | 
| | | |     added gamma cdf and minor changes
| | | | 
| | | | M	src/shogun/mathematics/Statistics.cpp
| | | | M	src/shogun/mathematics/Statistics.h
| | | |     
| * | | commit 4f3c76e8142574c75fd5f726ec82530c1fcb0a10
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 6 19:41:51 2012 +0100
| | | | 
| | | |     initial work on computing p value using gamma distribution for quadratic MMD
| | | | 
| | | | M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | | M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit 9e5ef911762f5912dd1af1e550a8e01aa25af27d
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Wed Jun 6 19:41:09 2012 +0100
| | |   
| | |       re-integrated algolib functions due to an error somewhere :(
| | |   
| | |   M	src/shogun/mathematics/Statistics.cpp
| | |   M	src/shogun/mathematics/Statistics.h
| | |    
* | | commit 45d89d971e7323f88bcbd7356f4102021738db50
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 7 03:12:34 2012 +0400
| | | 
| | |     Attempt to fix LPBoost
| | | 
| | | M	src/shogun/classifier/LPBoost.cpp
| | | M	src/shogun/mathematics/Cplex.cpp
| | | M	src/shogun/mathematics/Cplex.h
| | |      
* | |   commit 84fbbe6e3a448641aa22c2e3df6823a01e20951b
|\ \ \  Merge: c8e0a66 724eb3b
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jun 7 03:09:37 2012 +0400
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 724eb3baefa6d410f64400da12c7c24da1ce4992
| |\ \ \  Merge: c699c87 daeea81
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jun 6 09:26:47 2012 -0700
| | | | | 
| | | | |     Merge pull request #570 from karlnapf/master
| | | | |     
| | | | |     updated inverse gamma cdf tests
| | | | |      
| | * | | commit daeea81b97122231645c82953454d9530fd43d83
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jun 6 17:25:08 2012 +0100
| | | |   
| | | |       put different values to examples
| | | |   
| | | |   M	examples/undocumented/libshogun/statistics.cpp
| | | |       
| * | |   commit c699c87206b7cdbdab2de083f3ec2aab475169bc
| |\ \ \  Merge: 3177332 2b1ff82
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 5 03:01:41 2012 -0700
| | | | | 
| | | | |     Merge pull request #569 from karlnapf/master
| | | | |     
| | | | |     removed test for now
| | | | |      
| | * | | commit 2b1ff82c1f760c67027ece68e8ebb9d1ddb5dc69
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 5 11:00:41 2012 +0100
| | | | | 
| | | | |     temprary fix for the test (there is somethign wrong with the ALGOLIB routines)
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics.cpp
| | | | |      
| * | | | commit 3177332a309378498618f0ca793c237b567e8fff
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jun 5 11:56:10 2012 +0200
| | | | | 
| | | | |     fix compile error in dynint example and reduce array size to speed it up
| | | | | 
| | | | | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | | | |        
| * | | |   commit 90df188645470baf29ca736589a2878fcf737ec2
| |\ \ \ \  Merge: c4402d5 62ab975
| | |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Tue Jun 5 02:55:50 2012 -0700
| | | | |   
| | | | |       Merge pull request #568 from karlnapf/master
| | | | |       
| | | | |       fixes problem with non-terminating test
| | | | |      
| | * | | commit 62ab975d9bf9c489d9af8022cce9b74ca8e8ceef
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Tue Jun 5 10:54:52 2012 +0100
| | | |   
| | | |       fixed a non-terminating test case
| | | |   
| | | |   M	examples/undocumented/libshogun/statistics.cpp
| | | |     
| * | | commit c4402d505bf327e7f0103a47b2feb4c4d07b5121
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jun 5 11:53:05 2012 +0200
| | | | 
| | | |     don't use SGVector in modsel example (fixes compile error)
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | |       
| * | |   commit 0d707d86d40dccd2b47b1ac9bcb97b039a142d2a
| |\ \ \  Merge: 8836c0a 816d12d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 4 14:24:51 2012 -0700
| | | | | 
| | | | |     Merge pull request #567 from karlnapf/master
| | | | |     
| | | | |     more statistics functions
| | | | |      
| | * | | commit 816d12d689fdb0f72cb77a59b3d750dce6a2fd71
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 4 22:22:28 2012 +0100
| | | | | 
| | | | |     added test to ensure high-quality results for new alglib routines
| | | | | 
| | | | | M	examples/undocumented/libshogun/statistics.cpp
| | | | |      
| | * | | commit 2fbbd7a399acd1de2a76a4430497c93c2f4cba89
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 4 22:21:53 2012 +0100
| | | | | 
| | | | |     added inverse_incomplete_gamma for computing the CDF of the
| | | | |     inverse gamma distribution. taken from alglib under gpl2+
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| | * | | commit 4400786d2fe196aca496f9fa5e6e9001a2578cf4
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 4 22:21:03 2012 +0100
| | | |   
| | | |       added comment
| | | |   
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |       
| * | |   commit 8836c0afd2086adfb68ea4a3d5437bb0d6521781
| |\ \ \  Merge: ef62fca f6951d0
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 4 12:56:20 2012 -0700
| | | | | 
| | | | |     Merge pull request #566 from karlnapf/master
| | | | |     
| | | | |     finishing touches to spectrum based sampling for quadratic MMD
| | | | |      
| | * | | commit f6951d06a3cc889a43f1e6be70bd4a35320aaec1
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 4 20:53:33 2012 +0100
| | | |   
| | | |       -finishing touches to the spectrum based null-distribution sampling
| | | |       (tested against MATLAB implementation)
| | | |   
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | | |     
| * | | commit ef62fcaf0276c199ed8384804b426edc8b98097a
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 4 21:27:47 2012 +0200
| | | | 
| | | |     split up SGVector into .cpp / .h file and only enable it for numerical types
| | | | 
| | | | A	src/shogun/lib/SGVector.cpp
| | | | M	src/shogun/lib/SGVector.h
| | | |     
| * | | commit eac52492afee835922c942673de8c3adb23e801b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 4 21:27:06 2012 +0200
| | | | 
| | | |     drop GMM - it abuses SGVector to store Gaussians
| | | | 
| | | | M	src/interfaces/modular/Distribution.i
| | | | M	src/interfaces/modular/Distribution_includes.i
| | | | D	src/shogun/clustering/GMM.cpp
| | | | D	src/shogun/clustering/GMM.h
| | | |     
| * | | commit ba6bb44342263e3527cfe8623aadc796ef28ca8d
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 4 21:26:30 2012 +0200
| | | | 
| | | |     fix error in formula
| | | | 
| | | | M	src/shogun/so/StructuredModel.h
| | | |     
| * | | commit fc9099cf9fc8931c8c8cbe0db8d171e12ebb5c8a
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 4 21:26:03 2012 +0200
| | | | 
| | | |     fix documentation error
| | | | 
| | | | M	src/shogun/labels/Labels.h
| | | |       
| * | |   commit 2b27934f53ee393df981ed33d6961a493fe4d32a
| |\ \ \  Merge: 7830e2e 95228e9
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jun 3 16:29:20 2012 -0700
| | | | | 
| | | | |     Merge pull request #565 from karlnapf/master
| | | | |     
| | | | |     kernel spectrum based sampling of null distribution
| | | | |      
| | * | | commit 95228e97265b595310250dcbd28d8b73e656243e
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 4 00:27:34 2012 +0100
| | | |   
| | | |       -added SGVector method for sum
| | | |       -implemented sample_sull_spectrum for MMD^2
| | | |   
| | | |   M	src/shogun/mathematics/Math.h
| | | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | | |       
| * | |   commit 7830e2eee6969073fa679826c9b94f63d2d41ce4
| |\ \ \  Merge: 71ddf75 be0a1f5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jun 3 15:33:16 2012 -0700
| | | | | 
| | | | |     Merge pull request #564 from karlnapf/master
| | | | |     
| | | | |     added create_centering_matrix
| | | | |      
| | * | | commit be0a1f59523c80aad576a9c7c6a36a2e3c0ddcbb
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Sun Jun 3 23:27:31 2012 +0100
| | | |   
| | | |       -added create_centering_matrix which returns a matrix that can be used
| | | |       to center data matrices
| | | |   
| | | |   M	src/shogun/mathematics/Math.cpp
| | | |   M	src/shogun/mathematics/Math.h
| | | |     
* | | | commit c8e0a665f2de6adf61f473c4ba8c2805ddfad5e1
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Thu Jun 7 03:09:26 2012 +0400
| | |   
| | |       Added new data
| | |   
| | |   M	data
| | |    
* | | commit 71ddf75e0c27ccefd4e9bd7be0e9cbffa5a50f93
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jun 4 01:39:16 2012 +0400
| | | 
| | |     Fixed get subkernel weights in CombinedKernel
| | | 
| | | M	src/shogun/kernel/CombinedKernel.cpp
| | |      
* | |   commit f91331ab028e5395598fd6af6614fdba664ff99d
|\ \ \  Merge: 9b380e8 525eb66
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jun 3 14:27:29 2012 -0700
| | | | 
| | | |     Merge pull request #563 from karlnapf/master
| | | |     
| | | |     some CMath convienience methods
| | | |     
| * | | commit 525eb66c776cbe146dee46c35efb896f0a511be8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jun 3 22:04:21 2012 +0100
| | | | 
| | | |     usage of create_identity_matrix
| | | | 
| | | | M	examples/undocumented/libshogun/mathematics_lapack.cpp
| | | |     
| * | | commit 96dc4186ea9e5f05be30fc57f7c2f4f4558c0b3f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jun 3 22:03:41 2012 +0100
| | | | 
| | | |     -added create_identity_matrix based on SGMatrix
| | | | 
| | | | M	src/shogun/mathematics/Math.cpp
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit e04a0e69c9827f2b7bfb3afa22ab46dedcb1d297
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jun 3 21:56:44 2012 +0100
| | | | 
| | | |     -added convienience methods for display_matrix/vector based on SGVector
| | | |     -added matrix_multiply based on LAPACK
| | | | 
| | | | M	examples/undocumented/libshogun/mathematics_lapack.cpp
| | | | M	src/shogun/mathematics/Math.cpp
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 4343cf87512d9c4d0a54cda181189c2ac82ba9b6
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Sun Jun 3 20:11:14 2012 +0100
| | |   
| | |       some initial work on Gram-Eigen-Spectrum based Threshold for MMD^2
| | |   
| | |   M	src/shogun/statistics/QuadraticTimeMMD.cpp
| | |   M	src/shogun/statistics/QuadraticTimeMMD.h
| | |    
* | | commit 9b380e806128ab22fdab0dcc0b610841902ab3fd
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jun 3 22:30:35 2012 +0200
| | | 
| | |     Integrate liblinears SVR
| | |     
| | |     - use double* for labels in liblinear (following upstream change)
| | |     - convert liblinear ops to use DotFeatures
| | | 
| | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | M	src/shogun/kernel/Kernel.cpp
| | | M	src/shogun/lib/external/shogun_liblinear.cpp
| | | M	src/shogun/lib/external/shogun_liblinear.h
| | | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | | M	src/shogun/regression/svr/LibLinearRegression.cpp
| | | M	src/shogun/regression/svr/LibLinearRegression.h
| | |    
* | | commit 7fb034c8df0b50ba21fc045b25d01def9b117195
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 22:14:30 2012 +0200
| | | 
| | |     add liblinear's L2R_LR
| | | 
| | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | M	src/shogun/classifier/svm/LibLinear.h
| | | M	src/shogun/lib/external/shogun_liblinear.cpp
| | | M	src/shogun/lib/external/shogun_liblinear.h
| | |    
* | | commit 17a13062736a3413e8db03b1ad26e910f8030062
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 3 05:24:19 2012 +0400
| | | 
| | |     Commented MKL breaker in example to make test work
| | | 
| | | M	examples/undocumented/python_modular/mkl_linadd_regression.py
| | |    
* | | commit 4b8c7d08c661f58c9744ee8d13ef4316f84d6a3a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 3 03:17:36 2012 +0400
| | | 
| | |     Hopefully fixed MKL linadd in SVRLight
| | | 
| | | A	examples/undocumented/python_modular/mkl_linadd_regression.py
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | |    
* | | commit 3e1dc474d386c008e4900b5928c463b62df9c0d7
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 3 01:37:03 2012 +0400
| | | 
| | |     Fixed wrong free in SVRLight
| | | 
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | |    
* | | commit f0a2a129f3bc79336aa66b49f2709a545d4871d7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 20:21:40 2012 +0200
| | | 
| | |     add empty liblinear regressor
| | | 
| | | M	src/interfaces/modular/Regression.i
| | | M	src/interfaces/modular/Regression_includes.i
| | | M	src/shogun/classifier/svm/LibLinear.h
| | | A	src/shogun/regression/svr/LibLinearRegression.cpp
| | | A	src/shogun/regression/svr/LibLinearRegression.h
| | |    
* | | commit 80b80137880e3b7900442808efe38ee1520ba17e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 20:19:05 2012 +0200
| | | 
| | |     fix compile warning in md5sum
| | | 
| | | M	src/shogun/lib/Hash.cpp
| | | M	src/shogun/lib/Hash.h
| | |    
* | | commit b921a7d765af3e0fecbd77ffd207707ed7e5b04b
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 20:18:39 2012 +0200
| | | 
| | |     add proper copyrights in Director* stuff
| | | 
| | | M	src/shogun/features/DirectorDotFeatures.h
| | | M	src/shogun/kernel/DirectorKernel.h
| | |    
* | | commit 7344caadf7882fefb5f8449bf50e5a5d25f660a5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 06:42:48 2012 +0200
| | | 
| | |     add empty define for ignore in class list
| | | 
| | | M	src/shogun/features/DirectorDotFeatures.h
| | | M	src/shogun/kernel/DirectorKernel.h
| | |    
* | | commit 8a150883ba15e8e755b41d47db87b5c3720630e5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 2 06:42:07 2012 +0200
| | | 
| | |     fix ruby detection in configure
| | | 
| | | M	src/configure
| | |    
* | | commit 78f9ac6428a977f5fc6a4bbf1f9619d07886c0b7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 1 20:47:54 2012 +0200
| | | 
| | |     fix octave detection for octave 3.6.x (Closes issue #383)
| | |     
| | |     thanks andyknownasabu for the fix
| | | 
| | | M	src/configure
| | |    
* | | commit e915d01e37dda7c48849be60781beaee93742044
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jun 2 01:37:11 2012 +0400
| | | 
| | |     Fixed GNB zero variance handling
| | | 
| | | M	src/shogun/multiclass/GaussianNaiveBayes.cpp
| | | M	src/shogun/multiclass/GaussianNaiveBayes.h
| | |    
* | | commit f100cae8a7420478c3d0968bf9dff730bd2ba00e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jun 2 00:51:44 2012 +0400
| | | 
| | |     Added debug error instead of assert in StringFeatures
| | | 
| | | M	src/shogun/features/StringFeatures.cpp
| | |    
* | | commit 13789b0e73964a6cb664c2d8a5185a8327cedec2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jun 1 00:28:57 2012 +0400
| | | 
| | |     Fixed bug reported in #561
| | | 
| | | M	src/shogun/features/DirectorDotFeatures.h
| | |    
* | | commit 018e4534264d3645340428b9bc217ca3cf5a0da3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 31 21:02:35 2012 +0200
| | | 
| | |     get minimal director dot features example to work
| | | 
| | | A	examples/undocumented/python_modular/features_director_dot__modular.py
| | | M	src/shogun/features/DirectorDotFeatures.h
| | | M	src/shogun/lib/SGVector.h
| | |    
* | | commit ea40ed50656192e243b01cf71371497228ce7185
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 31 19:19:11 2012 +0200
| | | 
| | |     enable director for directordotfeatures
| | | 
| | | M	src/interfaces/modular/Features.i
| | |    
* | | commit 86c3eaad8dd671be6fd214063bd64234a2beb73e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 31 19:18:53 2012 +0200
| | | 
| | |     whitespace fixes
| | | 
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | |    
* | | commit 9a34a7e86d923b1a7c266c6fdc7f5dafef8a7003
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 31 08:34:04 2012 +0200
| | | 
| | |     first draft of director dot features
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/Features_includes.i
| | | A	src/shogun/features/DirectorDotFeatures.h
| | | M	src/shogun/features/DotFeatures.cpp
| | | M	src/shogun/features/DotFeatures.h
| | | M	src/shogun/features/FeatureTypes.h
| | |      
* | |   commit 4b6f6f9f162cbd34c4664250dfc9ed807980316d
|\ \ \  Merge: fb4d081 4c20d8a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue May 29 12:58:31 2012 -0700
| | | | 
| | | |     Merge pull request #558 from karlnapf/master
| | | |     
| | | |     convienience method for eigenvalues and check for correct results in example
| | | |     
| * | | commit 4c20d8aeddb864eb4a31749cbf160f6f58cb7e45
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue May 29 18:37:33 2012 +0100
| | | | 
| | | |     added  SGVector/SGMatrix based eigenvalue routine wrapper for the existing
| | | |     eigenvalue function
| | | | 
| | | | M	src/shogun/mathematics/Math.cpp
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit bea615a17f16991f6f8c08173408a40ae400b043
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue May 29 18:37:10 2012 +0100
| | | | 
| | | |     added test for new SGVector/SGMatrix based eigenvalue routine and a
| | | |     check for correct results for a simple example.
| | | | 
| | | | M	examples/undocumented/libshogun/mathematics_lapack.cpp
| | | |     
* | | | commit fb4d081d5672a599f9c3cbd0bbbd47238f4b0e1c
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Tue May 29 23:37:59 2012 +0400
| | |   
| | |       Updated python graphical examples
| | |   
| | |   M	.gitignore
| | |   M	examples/undocumented/python_modular/graphical/interactive_clustering_demo.py
| | |   M	examples/undocumented/python_modular/graphical/interactive_svm_demo.py
| | |   M	examples/undocumented/python_modular/graphical/interactive_svr_demo.py
| | |   M	examples/undocumented/python_modular/graphical/kernel_ridge_regression.py
| | |   M	examples/undocumented/python_modular/graphical/kernel_ridge_regression_sinc.py
| | |   M	examples/undocumented/python_modular/graphical/multiclass_qda.py
| | |   M	examples/undocumented/python_modular/graphical/qda.py
| | |   M	examples/undocumented/python_modular/graphical/regression_lars.py
| | |   M	examples/undocumented/python_modular/graphical/svr_sinc.py
| | |   M	examples/undocumented/python_modular/graphical/util.py
| | |    
* | | commit 80e75c893f1ac9f3b717f48877d4bc13446002d8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 28 21:50:59 2012 +0200
| | | 
| | |     let example exit sanely when shogun wasn't compiled with directors
| | |     enabled
| | | 
| | | M	examples/undocumented/python_modular/kernel_director_linear_modular.py
| | |      
* | |   commit 2dc985cbe3e6e84ec7899989e15a3cf07d4c5c9f
|\ \ \  Merge: d8a7270 92b1eec
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Mon May 28 10:41:40 2012 -0700
| | |   
| | |       Merge pull request #557 from gsomix/director_kernel
| | |       
| | |       preliminary version of DirectorKernel
| | |    
| * | commit 92b1eec6455289d317e312554c2dfe9f3b101a33
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Mon May 28 21:13:41 2012 +0400
| | | 
| | |     deleted spaces
| | | 
| | | M	src/shogun/kernel/Kernel.h
| | |    
| * | commit 1a1a30c42ae90b564246c2584b1c7802dfe60136
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Mon May 28 21:12:59 2012 +0400
| |   
| |       added missing virtual function to DirectorKernel
| |   
| |   A	examples/undocumented/python_modular/kernel_director_linear_modular.py
| |   M	src/shogun/kernel/DirectorKernel.h
| |   
* | commit d8a72704705b337e9627a0a23ade29a3324d1404
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 27 00:27:58 2012 +0200
| | 
| |     add some helper functions for director kernel
| | 
| | M	src/shogun/kernel/DirectorKernel.h
| | M	src/shogun/kernel/Kernel.h
| |   
* | commit 676b94262d9a1eb51ae097348e87f5ffc99bc782
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun May 27 00:25:20 2012 +0400
| | 
| |     Removed a few doc warnings
| | 
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.h
| |   
* | commit 817fb76d264d29766d0aaa1f3d7a6ed48b9df2cd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 26 21:32:43 2012 +0200
| | 
| |     create *public* kernel_function method to be overidden in directorkernel
| | 
| | M	src/shogun/kernel/DirectorKernel.h
| |   
* | commit 216b6584732a1c47e587e99519a36988878b4a04
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 26 20:09:19 2012 +0200
| | 
| |     fix ruby example
| | 
| | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| |   
* | commit 156a436794f93027c97979014281ad1697306155
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 26 09:28:44 2012 +0200
| | 
| |     use appropriate label types for ruby modular
| | 
| | M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| |     
* |   commit f29facf62d1e59cc2d359785220d59129aa3fce1
|\ \  Merge: a077bd5 349d66c
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sat May 26 00:25:22 2012 -0700
| |   
| |       Merge pull request #555 from puffin444/master
| |       
| |       ProductKernel
| |   
| * commit 349d66c7487f206fb72867394f8600ed525d605a
|/  Author: Jacob Walker <walke434@msu.edu>
|   Date:   Sat May 26 02:00:42 2012 +0000
|   
|       Added Element-wise Product Kernel. This Kernel is based heavily on
|       Combined Kernel
|   
|   M	src/interfaces/modular/Kernel.i
|   M	src/interfaces/modular/Kernel_includes.i
|   M	src/shogun/kernel/Kernel.h
|   A	src/shogun/kernel/ProductKernel.cpp
|   A	src/shogun/kernel/ProductKernel.h
|  
* commit a077bd58571e85d4762ce5123a90494a42684d69
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 25 23:34:24 2012 +0400
| 
|     Fixes for Qtest rejection strategy
| 
| M	src/shogun/multiclass/RejectionStrategy.h
|  
* commit eac2e3c0229d41713abe43f8bf558c76f2635264
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 25 23:03:04 2012 +0400
| 
|     Added rejection strategy handling to multiclass machine
| 
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| M	src/shogun/multiclass/MulticlassStrategy.cpp
| M	src/shogun/multiclass/MulticlassStrategy.h
|  
* commit f96fdfa4f43dfa16b69e8bd044b0c68dede471ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 19:46:35 2012 +0200
| 
|     fix c# and ruby example to work with new SGVector
| 
| M	examples/undocumented/csharp_modular/VectorTest.cs
| M	examples/undocumented/csharp_modular/classifier_averaged_perceptron_modular.cs
| M	examples/undocumented/csharp_modular/classifier_gaussiannaivebayes_modular.cs
| M	examples/undocumented/csharp_modular/classifier_gmnpsvm_modular.cs
| M	examples/undocumented/csharp_modular/classifier_gpbtsvm_modular.cs
| M	examples/undocumented/csharp_modular/classifier_knn_modular.cs
| M	examples/undocumented/csharp_modular/classifier_larank_modular.cs
| M	examples/undocumented/csharp_modular/classifier_lda_modular.cs
| M	examples/undocumented/csharp_modular/classifier_liblinear_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvm_modular.cs
| M	examples/undocumented/csharp_modular/classifier_libsvmoneclass_modular.cs
| D	examples/undocumented/csharp_modular/classifier_libsvn_modular.cs
| M	examples/undocumented/csharp_modular/classifier_mpdsvm_modular.cs
| M	examples/undocumented/csharp_modular/classifier_multiclasslibsvm_modular.cs
| M	examples/undocumented/csharp_modular/classifier_perceptron_modular.cs
| M	examples/undocumented/csharp_modular/evaluation_contingencytableevaluation_modular.cs
| M	examples/undocumented/csharp_modular/kernel_auc_modular.cs
| M	examples/undocumented/csharp_modular/kernel_salzberg_word_string_modular.cs
| M	examples/undocumented/csharp_modular/mkl_binclass_modular.cs
| M	examples/undocumented/csharp_modular/mkl_multiclass_modular.cs
| M	examples/undocumented/csharp_modular/regression_krr_modular.cs
| M	examples/undocumented/csharp_modular/regression_libsvr_modular.cs
| M	examples/undocumented/csharp_modular/regression_svrlight_modular.cs
| M	examples/undocumented/ruby_modular/regression_krr_modular.rb
|  
* commit 1de9b14aa1632fa466b3be393339aed7380b74bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 17:18:47 2012 +0200
| 
|     fix java modular examples
| 
| M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| M	examples/undocumented/java_modular/classifier_domainadaptationsvm_modular.java
| M	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| M	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| M	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| M	examples/undocumented/java_modular/classifier_knn_modular.java
| M	examples/undocumented/java_modular/classifier_larank_modular.java
| M	examples/undocumented/java_modular/classifier_lda_modular.java
| M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| M	examples/undocumented/java_modular/classifier_libsvm_modular.java
| M	examples/undocumented/java_modular/classifier_libsvmoneclass_modular.java
| M	examples/undocumented/java_modular/classifier_mpdsvm_modular.java
| M	examples/undocumented/java_modular/classifier_multiclasslibsvm_modular.java
| M	examples/undocumented/java_modular/classifier_perceptron_modular.java
| M	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| M	examples/undocumented/java_modular/classifier_svmlight_modular.java
| M	examples/undocumented/java_modular/evaluation_contingencytableevaluation_modular.java
| M	examples/undocumented/java_modular/evaluation_meansquarederror_modular.java
| M	examples/undocumented/java_modular/evaluation_multiclassaccuracy_modular.java
| M	examples/undocumented/java_modular/evaluation_prcevaluation_modular.java
| M	examples/undocumented/java_modular/evaluation_rocevaluation_modular.java
| M	examples/undocumented/java_modular/kernel_auc_modular.java
| M	examples/undocumented/java_modular/kernel_combined_custom_poly_modular.java
| M	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| M	examples/undocumented/java_modular/mkl_binclass_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/java_modular/regression_krr_modular.java
| M	examples/undocumented/java_modular/regression_libsvr_modular.java
| M	examples/undocumented/java_modular/regression_svrlight_modular.java
| M	examples/undocumented/java_modular/serialization_complex_example.java
| M	examples/undocumented/java_modular/serialization_svmlight_modular.java
|    
*   commit 43b5b5ed52433225af50c4e6e4bb9f049dceb6bd
|\  Merge: a4fd65a 07554b5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri May 25 07:12:44 2012 -0700
| | 
| |     Merge pull request #554 from karlnapf/master
| |     
| |     minor fix
| |   
| * commit 07554b5767878d0c8c81c91519e661196c261eb5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri May 25 15:11:59 2012 +0100
| | 
| |     corrected debug message
| | 
| | M	src/shogun/evaluation/CrossValidation.cpp
| |     
* |   commit a4fd65a7ff2c24b1d6ed22b3587c6bb7d0878c80
|\ \  Merge: 19ddc93 f377998
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri May 25 05:38:39 2012 -0700
| |   
| |       Merge pull request #553 from karlnapf/master
| |       
| |       debug messages for x-val
| |   
| * commit f3779987f96b5174dbf4bef6704519fcd54f14b4
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri May 25 13:37:30 2012 +0100
|   
|       added debug messages for x-val
|       removed debug messages of ~TParameter (spamming)
|   
|   M	src/shogun/base/Parameter.cpp
|   M	src/shogun/evaluation/CrossValidation.cpp
|  
* commit 19ddc93400228d7f69640205834143bb6c9fc2ce
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 25 14:47:53 2012 +0400
| 
|     Fixed wrong handling of submachines array in multiclass machine
| 
| M	src/shogun/machine/LinearMulticlassMachine.h
| M	src/shogun/machine/MulticlassMachine.cpp
|    
*   commit 6c4cdd51209072cf4be109a41bbd4f4863ff9518
|\  Merge: 37f1841 93b9050
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 25 03:43:08 2012 -0700
| | 
| |     Merge pull request #552 from pluskid/multiclass
| |     
| |     Fix missing doc warnings and correct some label types in MC Strategies.
| |   
| * commit 93b9050dfc3d7d6378fd7ad298457e917fe15a7d
|/  Author: Chiyuan Zhang <pluskid@gmail.com>
|   Date:   Fri May 25 18:33:04 2012 +0800
|   
|       Fix missing doc warnings and correct some label types in MC Strategies.
|   
|   M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
|   M	src/shogun/machine/MulticlassMachine.cpp
|   M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|   M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
|   M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
|   M	src/shogun/multiclass/MulticlassStrategy.cpp
|   M	src/shogun/multiclass/MulticlassStrategy.h
|   M	src/shogun/multiclass/ecoc/ECOCDecoder.h
|   M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
|   M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.h
|   M	src/shogun/multiclass/ecoc/ECOCSimpleDecoder.h
|   M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
|   M	src/shogun/multiclass/ecoc/ECOCStrategy.h
|   M	src/shogun/multiclass/ecoc/ECOCUtil.h
|  
* commit 37f18415062f0fd297e4fd0c817a072d1294d3ab
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 25 03:52:08 2012 +0400
| 
|     Removed a few warnings
| 
| M	src/shogun/lib/external/shogun_liblinear.cpp
| M	src/shogun/machine/MulticlassMachine.cpp
|  
* commit ede11ce84199fba3844ab1bb929e510e1eb54ebe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 25 03:51:43 2012 +0400
| 
|     Made SVMOcas support subsets
| 
| M	src/shogun/classifier/svm/SVMOcas.cpp
|  
* commit 78661581cd9b0c02911d42cba69d355cd70c8fc5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 22:51:12 2012 +0200
| 
|     forgot .dat suffix
| 
| M	examples/undocumented/r_static/regression_krr.R
| M	examples/undocumented/r_static/regression_libsvr.R
|  
* commit 23dfd86125d34eefe45d11f4c95a7311c3bca0db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 22:44:13 2012 +0200
| 
|     add new data
| 
| M	data
|  
* commit 99a35be008004c6a7e11380baee3ac37c389b8d5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 22:32:30 2012 +0200
| 
|     fix static interfaces
| 
| M	data
| M	examples/undocumented/cmdline_static/classifier_gmnpsvm.sg
| M	examples/undocumented/cmdline_static/regression_krr.sg
| M	examples/undocumented/cmdline_static/regression_libsvr.sg
| M	examples/undocumented/matlab_and_octave/regression_krr.m
| M	examples/undocumented/matlab_and_octave/regression_libsvr.m
| M	examples/undocumented/python_static/regression_krr.py
| M	examples/undocumented/python_static/regression_libsvr.py
| M	examples/undocumented/r_static/regression_krr.R
| M	examples/undocumented/r_static/regression_libsvr.R
| M	src/shogun/ui/GUILabels.cpp
| M	src/shogun/ui/GUILabels.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 168604a54c8c0f6a56ff13929f723d0fdafdbb8e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 20:12:23 2012 +0200
| 
|     fix %renames to not remove %extend'ed applies
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 2be463b1d4a47b8fc9c80b816ba89594318dfe2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:11:53 2012 +0200
| 
|     fix label get_name()
| 
| M	src/shogun/labels/BinaryLabels.h
| M	src/shogun/labels/DenseLabels.h
| M	src/shogun/labels/MulticlassLabels.h
| M	src/shogun/labels/RegressionLabels.h
|  
* commit 1ff38240d9f2c058666359ddc567e9a25fe0372c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:06:58 2012 +0200
| 
|     fix minimal libsvm csharp example
| 
| M	examples/undocumented/csharp_modular/classifier_libsvm_minimal_modular.cs
|  
* commit 29b76132b2305c11f72bce2da76993436a475be2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:05:30 2012 +0200
| 
|     fix minimal libsvm java_modular example
| 
| M	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
|  
* commit d4a6596e0ff319a8b61b3ce9b39fde340c4b7dda
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:00:01 2012 +0200
| 
|     fix lua examples
| 
| M	examples/undocumented/lua_modular/check.sh
| M	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| M	examples/undocumented/lua_modular/classifier_libsvm_minimal_modular.lua
| M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| M	examples/undocumented/lua_modular/regression_krr_modular.lua
| M	examples/undocumented/lua_modular/serialization_complex_example.lua
|    
*   commit 8b0279c8ae9eb5ce267fbd4ccd31934ac87575c7
|\  Merge: 95c124d 0f4e4c7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 24 05:59:22 2012 -0700
| | 
| |     Merge pull request #551 from iglesias/so
| |     
| |     SO Initiation
| |   
| * commit 0f4e4c778f45cc7842ec0af9593da7cc2e93ee77
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Wed May 23 12:41:04 2012 +0200
| | 
| |     + Structured labels adapted to new labels structure
| | 
| | D	src/shogun/features/StructuredLabels.cpp
| | D	src/shogun/features/StructuredLabels.h
| | M	src/shogun/labels/LabelTypes.h
| | A	src/shogun/labels/StructuredLabels.cpp
| | A	src/shogun/labels/StructuredLabels.h
| | M	src/shogun/machine/KernelStructuredOutputMachine.h
| | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | M	src/shogun/machine/StructuredOutputMachine.h
| | M	src/shogun/so/StructuredModel.cpp
| | M	src/shogun/so/StructuredModel.h
| | M	src/shogun/so/VanillaStructuredOutputMachine.cpp
| |   
| * commit 93d75a4cccfc1e1b305ac69dacbcd03d24384010
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 21 08:48:31 2012 +0200
| | 
| |     + added empty initialize optimization method
| | 
| | M	src/shogun/so/StructuredModel.cpp
| | M	src/shogun/so/StructuredModel.h
| |   
| * commit 4d2e00d8ec85429ea22e05e5c463c0c80daf2460
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 21 08:46:43 2012 +0200
| | 
| |     + variables used in optimization
| | 
| | M	src/shogun/so/VanillaStructuredOutputMachine.cpp
| |   
| * commit 02d42cba9af0d4d88313186c6b56dc450c63b3cf
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 15:52:58 2012 +0200
| | 
| |     + more small changes in StructuredModel
| | 
| | M	src/shogun/so/StructuredModel.cpp
| |   
| * commit aa8c234ab05cfbb0d04683c2c9ccf42d068c7528
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 15:39:53 2012 +0200
| | 
| |     + set features and labels in StructuredModel
| | 
| | M	src/shogun/so/StructuredModel.cpp
| | M	src/shogun/so/StructuredModel.h
| |   
| * commit a6434f31edeab314be7f49268e8d140176e2a74b
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 15:24:16 2012 +0200
| | 
| |     + TODOS in SO Machine, must wait until labels hierarchy is decided
| | 
| | M	src/shogun/machine/StructuredOutputMachine.cpp
| | M	src/shogun/machine/StructuredOutputMachine.h
| |   
| * commit f0bc03126b48f9b94bc94e0a9d9e82363657a3f2
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 11:58:04 2012 +0200
| | 
| |     * fix bug introduced in last commit
| | 
| | M	src/shogun/loss/SquaredLoss.cpp
| |   
| * commit 32b83e517d339f7ed9ffbde6e26aed1d6c986941
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 11:53:15 2012 +0200
| | 
| |     - redundant code in loss functions
| | 
| | M	src/shogun/loss/LogLoss.cpp
| | M	src/shogun/loss/LogLoss.h
| | M	src/shogun/loss/LogLossMargin.cpp
| | M	src/shogun/loss/LogLossMargin.h
| | M	src/shogun/loss/LossFunction.h
| | M	src/shogun/loss/SmoothHingeLoss.cpp
| | M	src/shogun/loss/SmoothHingeLoss.h
| | M	src/shogun/loss/SquaredHingeLoss.cpp
| | M	src/shogun/loss/SquaredHingeLoss.h
| | M	src/shogun/loss/SquaredLoss.h
| |   
| * commit 5dab80c6b0e5ace5098552a8e6acdafdee1cd645
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 11:40:30 2012 +0200
| | 
| |     - StructuredLoss and + extensions in shogun/loss to support SO
| | 
| | M	src/shogun/loss/HingeLoss.cpp
| | M	src/shogun/loss/HingeLoss.h
| | M	src/shogun/loss/LogLoss.cpp
| | M	src/shogun/loss/LogLoss.h
| | M	src/shogun/loss/LogLossMargin.cpp
| | M	src/shogun/loss/LogLossMargin.h
| | M	src/shogun/loss/LossFunction.h
| | M	src/shogun/loss/SmoothHingeLoss.cpp
| | M	src/shogun/loss/SmoothHingeLoss.h
| | M	src/shogun/loss/SquaredHingeLoss.cpp
| | M	src/shogun/loss/SquaredHingeLoss.h
| | M	src/shogun/loss/SquaredLoss.cpp
| | M	src/shogun/loss/SquaredLoss.h
| | M	src/shogun/machine/KernelStructuredOutputMachine.cpp
| | M	src/shogun/machine/KernelStructuredOutputMachine.h
| | M	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | M	src/shogun/machine/StructuredOutputMachine.cpp
| | M	src/shogun/machine/StructuredOutputMachine.h
| | D	src/shogun/so/StructuredLoss.cpp
| | D	src/shogun/so/StructuredLoss.h
| | M	src/shogun/so/VanillaStructuredOutputMachine.cpp
| | M	src/shogun/so/VanillaStructuredOutputMachine.h
| |   
| * commit 33e81f804ab12514125250c5493bf04c4561e0e0
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu May 17 19:06:30 2012 +0200
| | 
| |     + train machine in Vanilla SO machine, call to QP solver missing
| | 
| | M	src/shogun/machine/KernelStructuredOutputMachine.h
| | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | M	src/shogun/machine/StructuredOutputMachine.h
| | M	src/shogun/so/StructuredLoss.h
| | M	src/shogun/so/StructuredModel.h
| | M	src/shogun/so/VanillaStructuredOutputMachine.cpp
| | M	src/shogun/so/VanillaStructuredOutputMachine.h
| |   
| * commit e64633cc2a9201df1bb1e683745c6e929d6c6ee2
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu May 17 14:15:02 2012 +0200
| | 
| |     + skeleton for Vanilla SO machine
| | 
| | A	src/shogun/so/VanillaStructuredOutputMachine.cpp
| | A	src/shogun/so/VanillaStructuredOutputMachine.h
| |   
| * commit 9cf6403198c9b4c9bcf20c62eb4186dc98463f2c
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu May 17 12:19:58 2012 +0200
| | 
| |     * fix some documentation compile warnings
| | 
| | M	src/shogun/machine/KernelStructuredOutputMachine.h
| | M	src/shogun/machine/LinearStructuredOutputMachine.h
| | M	src/shogun/machine/StructuredOutputMachine.h
| | M	src/shogun/so/StructuredLoss.h
| |   
| * commit ec3aee837ff44d368e15df4c4f1b076cd52a2191
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Tue May 15 23:24:17 2012 +0200
| | 
| |     ~ naming in macros StructuredLoss
| | 
| | M	src/shogun/so/StructuredLoss.h
| |   
| * commit 4977761123970bce69cea49f232e0a691a2d091a
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Tue May 15 23:22:47 2012 +0200
| | 
| |     - trailing spaces
| | 
| | M	src/shogun/machine/KernelStructuredOutputMachine.cpp
| |   
| * commit 59427d91a58b469555e402ec4b6c2e609051a17a
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 14 16:01:04 2012 +0200
| | 
| |     + hierarchy for SOMachines and preliminary implementations
| | 
| | A	src/shogun/machine/KernelStructuredOutputMachine.cpp
| | A	src/shogun/machine/KernelStructuredOutputMachine.h
| | A	src/shogun/machine/LinearStructuredOutputMachine.cpp
| | A	src/shogun/machine/LinearStructuredOutputMachine.h
| | A	src/shogun/machine/StructuredOutputMachine.cpp
| | M	src/shogun/machine/StructuredOutputMachine.h
| |   
| * commit e5b363ec21612d15743d99a41919d5e75f80f7ce
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 14 15:58:53 2012 +0200
| | 
| |     ~ inheritance to public
| | 
| | M	src/shogun/so/StructuredLoss.h
| | M	src/shogun/so/StructuredModel.h
| |   
| * commit ad013b5632fc9485716fb84f7daf313456d9ca32
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 14 14:38:01 2012 +0200
| | 
| |     + CResultSet and changes in return types
| | 
| | M	src/shogun/so/StructuredModel.cpp
| | M	src/shogun/so/StructuredModel.h
| |   
| * commit e85812ba16dec21dfce0a9c5ea20a08a014f9217
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Mon May 14 13:52:39 2012 +0200
|   
|       + initial SO interface
|   
|   A	src/shogun/features/StructuredLabels.cpp
|   A	src/shogun/features/StructuredLabels.h
|   A	src/shogun/lib/StructuredData.cpp
|   A	src/shogun/lib/StructuredData.h
|   A	src/shogun/machine/StructuredOutputMachine.h
|   A	src/shogun/so/StructuredLoss.cpp
|   A	src/shogun/so/StructuredLoss.h
|   A	src/shogun/so/StructuredModel.cpp
|   A	src/shogun/so/StructuredModel.h
|  
* commit 95c124dea8ee6fbf613f8905d53c28344e2ecfb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 08:19:30 2012 +0200
| 
|     fix most of octave_modular examples for new labels
| 
| M	examples/undocumented/octave_modular/classifier_domainadaptationsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_gmnpsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_gpbtsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_knn_modular.m
| M	examples/undocumented/octave_modular/classifier_lda_modular.m
| M	examples/undocumented/octave_modular/classifier_liblinear_modular.m
| M	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| M	examples/undocumented/octave_modular/classifier_libsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_mpdsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_multiclasslibsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_newtonsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_perceptron_modular.m
| M	examples/undocumented/octave_modular/classifier_subgradientsvm_modular.m
| M	examples/undocumented/octave_modular/classifier_svm_serialize_modular.m
| M	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| M	examples/undocumented/octave_modular/classifier_svmlin_modular.m
| M	examples/undocumented/octave_modular/classifier_svmocas_modular.m
| M	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| M	examples/undocumented/octave_modular/kernel_auc_modular.m
| M	examples/undocumented/octave_modular/kernel_histogramword_modular.m
| M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| M	examples/undocumented/octave_modular/regression_kernel_ridge_modular.m
| M	examples/undocumented/octave_modular/regression_libsvr_modular.m
| M	examples/undocumented/octave_modular/regression_svrlight_modular.m
|  
* commit 495a859900ecd90acbe6e8845d8322538d785f86
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed May 23 21:00:17 2012 +0400
| 
|     Moved train to train_machine in AveragedPerceptron and OnlineLibLinear
| 
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/AveragedPerceptron.h
| M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| M	src/shogun/classifier/svm/OnlineLibLinear.h
|  
* commit 7bbda1c818a242b14a088427c7caee54fa4999be
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed May 23 20:14:55 2012 +0400
| 
|     Fixed length of w vector in multiclass liblinaer
| 
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
|    
*   commit 4b848b45cae47519a029f36f27fbb68a9b481b39
|\  Merge: ba81d43 9725b6d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed May 23 07:33:59 2012 -0700
| | 
| |     Merge pull request #550 from karlnapf/master
| |     
| |     New two sample test: Quadratic time MMD
| |   
| * commit 9725b6df17e200b9aa2141504b10c665e299169b
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed May 23 15:31:31 2012 +0100
|   
|       Introduced CQuadraticTimeMMD and another level in the class hierarchy:
|       CKernelTwoSampleTestStatistic.
|       Minor fixes
|   
|   A	src/shogun/statistics/KernelTwoSampleTestStatistic.cpp
|   A	src/shogun/statistics/KernelTwoSampleTestStatistic.h
|   M	src/shogun/statistics/LinearTimeMMD.cpp
|   M	src/shogun/statistics/LinearTimeMMD.h
|   A	src/shogun/statistics/QuadraticTimeMMD.cpp
|   A	src/shogun/statistics/QuadraticTimeMMD.h
|   M	src/shogun/statistics/StatisticalTest.cpp
|   M	src/shogun/statistics/StatisticalTest.h
|   M	src/shogun/statistics/TwoSampleTestStatistic.cpp
|   M	src/shogun/statistics/TwoSampleTestStatistic.h
|  
* commit ba81d43b937d787081ff1ac321df3d412be59c4a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed May 23 15:01:18 2012 +0400
| 
|     Ignored {=,*,(),[]}operators in modular
| 
| M	src/interfaces/modular/modshogun.i
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit e59e42f176b4fef2b25603ad0fc9b7beaeabf7d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 09:40:23 2012 +0200
| 
|     %rename apply of any type and include Makefile in gitignore
| 
| M	.gitignore
| M	src/interfaces/modular/Machine.i
|    
*   commit 3f6197876d7ed7aa8714ddb477bd2cb3c1d95cae
|\  Merge: d126d99 1983da0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 22 23:14:40 2012 -0700
| | 
| |     Merge pull request #549 from pluskid/multiclass
| |     
| |     various fixes
| |   
| * commit 1983da023c666993fcd9cf2358dbf993018420d2
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Wed May 23 12:04:37 2012 +0800
| | 
| |     Fix evaluation_clustering error.
| | 
| | M	examples/undocumented/python_modular/evaluation_clustering.py
| |   
| * commit 2c0ea33f8be5942882153c6f3f9de9dad7081274
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Wed May 23 11:45:06 2012 +0800
| | 
| |     exclude abstract class from testing.
| | 
| | M	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| |   
| * commit d3e4418280e70fe75650d8fdfbaab07cd896f8b2
|/  Author: Chiyuan Zhang <pluskid@gmail.com>
|   Date:   Wed May 23 11:10:56 2012 +0800
|   
|       added temp files generated when running python_modular examples to gitignore
|   
|   M	.gitignore
|  
* commit d126d99cf9ba92114c4be48d3c0252095bcdebba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 23:40:09 2012 +0200
| 
|     only use %rename for non-type aware interfaces
| 
| M	src/interfaces/modular/Machine.i
|  
* commit f575c12609474527db891dadef1899150e77226f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 22:59:03 2012 +0400
| 
|     Revert "Splitted methods in apply macro in Machine.i."
|     
|     This reverts commit 40e4ea3fc603d90903274dac0e005a927fd88e3a.
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 5b12cea6fc48e01001e1cf1e34ef7b712e71e5a3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 22:41:38 2012 +0400
| 
|     Splitted methods in apply macro in Machine.i.
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 91829c9900db26c5f6b68da2dd2c907e1b6f754a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 22:59:03 2012 +0400
| 
|     Revert "Splitted methods in apply macro in Machine.i."
|     
|     This reverts commit 40e4ea3fc603d90903274dac0e005a927fd88e3a.
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 04b1e763252d9e98451f6ec288d767cfb21ec7ad
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 22:41:38 2012 +0400
| 
|     Splitted methods in apply macro in Machine.i.
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 6ad53e767ccd51718261f800310e3fcdb682abbf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 19:30:35 2012 +0200
| 
|     remove unneeded casts
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 58220efc548f599999b95564ab2c227f4a2b642f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 21:10:22 2012 +0400
| 
|     Changed C type of multiclass OCAS to proper float64_t
| 
| M	src/shogun/multiclass/MulticlassOCAS.h
|    
*   commit 1ac493d3a5c5dc0941a294c83aa7abbd61bed920
|\  Merge: fd99302 0287e1c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue May 22 09:23:02 2012 -0700
| | 
| |     Merge pull request #548 from karlnapf/master
| |     
| |     fixes failure of modsel examples
| |   
| * commit 0287e1cdf9859dc93bfee9ecc7c07e0a914c11dd
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue May 22 17:19:23 2012 +0100
|   
|       bugfix: removed valid check since this case has to be allowed
|   
|   M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
|  
* commit fd99302ff36db75d9a716d1be5de115b74eb8007
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 19:56:18 2012 +0400
| 
|     Made LibSVMOneClass do not require labels
| 
| M	src/shogun/classifier/svm/LibSVMOneClass.h
|  
* commit 46dd47feed9de3014622bfc4f9925f98ec979b3c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 19:38:32 2012 +0400
| 
|     Added problem type to clustering
| 
| M	src/shogun/clustering/Hierarchical.h
| M	src/shogun/clustering/KMeans.h
|  
* commit 60d83a2a3cfce9317dff248c92e010871591b678
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 17:23:04 2012 +0200
| 
|     check for equality
| 
| M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
|  
* commit 3ed97f5610477da1da39103f86e0a767d0628b13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 17:19:57 2012 +0200
| 
|     use get_label() in contingencytableeval
| 
| M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
|  
* commit 2939a88b120bdd0473874b5e82bb03308a167ea7
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Tue May 22 22:22:30 2012 +0800
| 
|     Now the equivalence of OVR and ECOCOVR+LLBDecoding validated
| 
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
|  
* commit 36c21e5359ffa66530d223a624d1511285c166f8
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Tue May 22 22:22:07 2012 +0800
| 
|     Make LLBDecoder non-abstract
| 
| M	src/interfaces/modular/Multiclass.i
| M	src/shogun/multiclass/ecoc/ECOCLLBDecoder.h
|    
*   commit 8ae55cdbf2a2e3918c4005b63677b60a14799745
|\  Merge: 910ae87 58aad86
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue May 22 07:39:14 2012 -0700
| | 
| |     Merge pull request #547 from karlnapf/master
| |     
| |     apply_locked label case distinctions
| |   
| * commit 58aad86bd3e42b025d18c821c6036ddac1a2e93c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue May 22 15:30:51 2012 +0100
| | 
| |     removed unnecessary check
| | 
| | M	src/shogun/machine/KernelMachine.cpp
| |   
| * commit 6cc41e5176b3f87cf7a92ea27b2a36fae5b025c6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue May 22 15:30:37 2012 +0100
| | 
| |     some more output messages revealed an error in CEvaluation
| | 
| | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| |   
| * commit cb9c048da2b09dcca4fff2d3a094947122667092
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue May 22 14:43:41 2012 +0100
| | 
| |     extended example to use locked and unlocked x-validation
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| |   
| * commit e13b7dd93339708b69a090bcd5bb7dd1d292abf4
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue May 22 14:42:42 2012 +0100
|   
|       added label distinctions for apply_locked
|   
|   M	src/shogun/machine/KernelMachine.cpp
|   M	src/shogun/machine/KernelMachine.h
|   M	src/shogun/machine/Machine.cpp
|   M	src/shogun/machine/Machine.h
|  
* commit 910ae8769127a93e0b74d72e5ca51f7585e300c9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 18:16:21 2012 +0400
| 
|     Fixes for WDSVMOcas
| 
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
|  
* commit f2d36d12765e935cd1bd723d8d6ceed79e8fd3bc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 18:04:42 2012 +0400
| 
|     Fixes for PluginEstimate
| 
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/PluginEstimate.h
|  
* commit bc5bd970670841424b72fadbcb8db7868913b739
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 17:56:59 2012 +0400
| 
|     Fixes for OnlineLinearMachine
| 
| M	src/shogun/machine/OnlineLinearMachine.cpp
| M	src/shogun/machine/OnlineLinearMachine.h
|  
* commit 57f6f02dc465b44c4a4c70f3200208ef28605041
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 17:31:33 2012 +0400
| 
|     Added virtual method indicating whether machine requires labels for training,
|     made clustering algorithms do not require labels
| 
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/Hierarchical.h
| M	src/shogun/clustering/KMeans.h
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
|    
*   commit d5a821647dc1f4b4b44a8375974e6ebea3d5b521
|\  Merge: dfeb9f2 86c4cc1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 22 06:09:03 2012 -0700
| | 
| |     Merge pull request #545 from pluskid/multiclass-ecoc
| |     
| |     Ensure related kernels call labels->ensure_valid
| |   
| * commit 86c4cc1cc6db22705e24d612bfd36efe71185dbd
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 22 21:07:28 2012 +0800
| | 
| |     fixed more indent conventions
| | 
| | M	src/shogun/kernel/ScatterKernelNormalizer.h
| |   
| * commit 242f0f7c9389e5e732cb7040ca8d6e347c3505a4
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 22 20:54:33 2012 +0800
| | 
| |     Fix indentation convention
| | 
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/ScatterKernelNormalizer.h
| |   
| * commit 83a3931fa170cff138722763ea65064efb8cef6c
|/  Author: Chiyuan Zhang <pluskid@gmail.com>
|   Date:   Tue May 22 20:41:28 2012 +0800
|   
|       Ensure related kernels call labels->ensure_valid
|   
|   M	src/shogun/kernel/AUCKernel.cpp
|   M	src/shogun/kernel/SalzbergWordStringKernel.cpp
|   M	src/shogun/kernel/ScatterKernelNormalizer.h
|  
* commit dfeb9f24d33d94a5424cb75e5a66ead84d255a5a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 16:30:01 2012 +0400
| 
|     Added ensure_valid to ROC, PRC and ContingencyTableEvaluation
| 
| M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.cpp
|    
*   commit 38d4eb6a2cf0dcc8ff0366a9e90e9f4bef62827d
|\  Merge: 47970c8 6207b02
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue May 22 16:10:09 2012 +0400
| | 
| |     Merge branch 'multiclass-ecoc' of https://github.com/pluskid/shogun
| |   
| * commit 6207b0259b2275387fabf54b0875006a67860b51
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 22 20:05:01 2012 +0800
| | 
| |     CLabels::is_valid should only be called at proper situation.
| |     
| |     It is not proper to call this in constructor. For example,
| |     the return value from apply() might be an "invalid" BinaryLabels
| |     because not both positive and negative labels presented.
| | 
| | M	src/shogun/labels/BinaryLabels.cpp
| | M	src/shogun/labels/BinaryLabels.h
| | M	src/shogun/labels/DenseLabels.cpp
| | M	src/shogun/labels/DenseLabels.h
| | M	src/shogun/labels/Labels.h
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| | M	src/shogun/labels/RegressionLabels.cpp
| | M	src/shogun/labels/RegressionLabels.h
| | M	src/shogun/machine/Machine.cpp
| |   
| * commit 987937eff6019671029539fc46325683b56269c4
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 22 17:56:11 2012 +0800
| | 
| |     An interface for checking label type
| | 
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/Machine.cpp
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| |     
* |   commit 47970c889e9b977a86c6ccb7123487e5252048ed
|\ \  Merge: 988e24f 8d2ca1a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue May 22 16:05:07 2012 +0400
| | | 
| | |     Merge branch 'Arrays' of https://github.com/gsomix/shogun
| | |    
| * | commit 8d2ca1aa91cc08e8cf5b1e58b2edbe11292f6c0a
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue May 22 09:32:46 2012 +0400
| | | 
| | |     fixes warnings and potential bugs
| | | 
| | | M	src/shogun/base/DynArray.h
| | | M	src/shogun/lib/DynamicArray.h
| | |    
* | | commit 988e24fa82ecdb22c0a4d4f9dfa42c08b43ff6c3
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/|   Date:   Tue May 22 14:11:05 2012 +0400
| |   
| |       Fixed DomainAdaptation binary svm
| |   
| |   M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| |   M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| |   M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| |   
* | commit 213f704a512bbb2e367c7c07601a1d41d8e90d1a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue May 22 13:42:39 2012 +0400
| | 
| |     Proper multiclass labels handling in KNN
| | 
| | M	src/shogun/multiclass/KNN.cpp
| | M	src/shogun/multiclass/KNN.h
| |     
* |   commit de7751b239506d3bc9d979204e23b916155033d3
|\ \  Merge: fc91f69 a048499
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue May 22 13:30:00 2012 +0400
| | | 
| | |     Merge branch 'multiclass-ecoc' of https://github.com/pluskid/shogun
| | |    
| * | commit a048499d14da8a92a3bababc2f3b6e6a9de3f81a
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue May 22 17:25:02 2012 +0800
| | | 
| | |     Simple fix for mkl_multiclass crasher
| | | 
| | | M	src/shogun/machine/MulticlassMachine.cpp
| | |      
* | |   commit fc91f69e86c07ee8cadaebf686b2b1408a3e0c9c
|\ \ \  Merge: e89b240 c7ba201
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 22 13:23:41 2012 +0400
| | | | 
| | | |     Merge branch 'const_methods' of https://github.com/gsomix/shogun
| | | |     
| * | | commit c7ba201c01186ac5cf223148faba09e345a0f2f5
| | |/  Author: Evgeniy Andreev <gsomix@gmail.com>
| |/|   Date:   Tue May 22 10:56:37 2012 +0400
| | |   
| | |       const methods in Features
| | |   
| | |   M	src/shogun/features/BinnedDotFeatures.cpp
| | |   M	src/shogun/features/BinnedDotFeatures.h
| | |   M	src/shogun/features/CombinedDotFeatures.h
| | |   M	src/shogun/features/CombinedFeatures.cpp
| | |   M	src/shogun/features/CombinedFeatures.h
| | |   M	src/shogun/features/DenseFeatures.cpp
| | |   M	src/shogun/features/DenseFeatures.h
| | |   M	src/shogun/features/DummyFeatures.cpp
| | |   M	src/shogun/features/DummyFeatures.h
| | |   M	src/shogun/features/ExplicitSpecFeatures.cpp
| | |   M	src/shogun/features/ExplicitSpecFeatures.h
| | |   M	src/shogun/features/Features.cpp
| | |   M	src/shogun/features/Features.h
| | |   M	src/shogun/features/HashedWDFeatures.h
| | |   M	src/shogun/features/HashedWDFeaturesTransposed.h
| | |   M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | |   M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | |   M	src/shogun/features/LBPPyrDotFeatures.cpp
| | |   M	src/shogun/features/LBPPyrDotFeatures.h
| | |   M	src/shogun/features/PolyFeatures.cpp
| | |   M	src/shogun/features/PolyFeatures.h
| | |   M	src/shogun/features/SNPFeatures.cpp
| | |   M	src/shogun/features/SNPFeatures.h
| | |   M	src/shogun/features/SparseFeatures.cpp
| | |   M	src/shogun/features/SparseFeatures.h
| | |   M	src/shogun/features/SparsePolyFeatures.cpp
| | |   M	src/shogun/features/SparsePolyFeatures.h
| | |   M	src/shogun/features/StreamingDenseFeatures.cpp
| | |   M	src/shogun/features/StreamingDenseFeatures.h
| | |   M	src/shogun/features/StreamingSparseFeatures.cpp
| | |   M	src/shogun/features/StreamingSparseFeatures.h
| | |   M	src/shogun/features/StreamingStringFeatures.cpp
| | |   M	src/shogun/features/StreamingStringFeatures.h
| | |   M	src/shogun/features/StreamingVwFeatures.cpp
| | |   M	src/shogun/features/StreamingVwFeatures.h
| | |   M	src/shogun/features/StringFeatures.cpp
| | |   M	src/shogun/features/StringFeatures.h
| | |   M	src/shogun/features/WDFeatures.cpp
| | |   M	src/shogun/features/WDFeatures.h
| | |      
* | |   commit e89b2408335d1703ab4999099e1a093fa1539738
|\ \ \  Merge: a557557 9060899
| | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/|   Date:   Tue May 22 13:20:52 2012 +0400
| | |   
| | |       Merge branch 'multiclass-ecoc' of https://github.com/pluskid/shogun
| | |    
| * | commit 9060899d67b71499dd153c133aba28b47bcd50de
| |/  Author: Chiyuan Zhang <pluskid@gmail.com>
| |   Date:   Tue May 22 17:10:38 2012 +0800
| |   
| |       Fixed multiclass problem-type.
| |   
| |   M	src/shogun/machine/Machine.h
| |   M	src/shogun/machine/MulticlassMachine.h
| |   
* | commit a55755709a6d85fd42fc3cd3611ebb90aea78580
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue May 22 13:19:42 2012 +0400
| | 
| |     Fixed ConjugateIndex
| | 
| | M	src/shogun/multiclass/ConjugateIndex.cpp
| | M	src/shogun/multiclass/ConjugateIndex.h
| |   
* | commit 6f792e24f82a3621a57c0f37555cdb05966f794e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue May 22 13:05:35 2012 +0400
| | 
| |     Fixed GaussianProcessRegression
| | 
| | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/GaussianProcessRegression.h
| |   
* | commit 548f14c2bc36952f0b8b5b1bb6293a62744eff41
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Tue May 22 13:05:09 2012 +0400
|   
|       Fixed serialization_matrix_modular example
|   
|   M	examples/undocumented/python_modular/serialization_matrix_modular.py
|  
* commit 3aff7a1587a34d7e291f426bdb2eb50ba3d56d43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 11:00:26 2012 +0200
| 
|     make get_label_type pure virtual again
| 
| M	src/shogun/labels/DenseLabels.h
| M	src/shogun/labels/Labels.h
|  
* commit 631f65b9955490a5bd1b7c862581839c08956456
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 12:54:49 2012 +0400
| 
|     Some fixes for multiclass machine
| 
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.h
|  
* commit eac048420a565a73f50d4bd8cfa4eee8b705a887
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 10:46:48 2012 +0200
| 
|     Label fix for missing examples
| 
| M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| M	examples/undocumented/python_modular/serialization_matrix_modular.py
| M	src/interfaces/modular/Machine.i
|  
* commit 1c1e4db0dd8848d0709fe611b00f369e707775e6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 12:40:38 2012 +0400
| 
|     Restored explicit measure classes
| 
| M	src/shogun/evaluation/ContingencyTableEvaluation.h
|    
*   commit 7baaf9c82761116fbb7c78b290ed15f4a446d2ad
|\  Merge: b420b40 4a2a017
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 22 01:18:15 2012 -0700
| | 
| |     Merge pull request #538 from iglesias/problem_type
| |     
| |     Add problem types to machines.
| |   
| * commit 4a2a017f36517b8175180b3c1cd9abb963c4e222
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Tue May 22 09:31:32 2012 +0200
| | 
| |     + return problem type in regression machines
| | 
| | M	src/shogun/regression/GaussianProcessRegression.h
| | M	src/shogun/regression/KernelRidgeRegression.h
| | M	src/shogun/regression/LeastAngleRegression.h
| | M	src/shogun/regression/LeastSquaresRegression.h
| | M	src/shogun/regression/LinearRidgeRegression.h
| | M	src/shogun/regression/svr/LibSVR.h
| | M	src/shogun/regression/svr/MKLRegression.h
| | M	src/shogun/regression/svr/SVRLight.h
| |   
| * commit 5f05396437f5036db319ebe2355d2f1b1d25ba66
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Tue May 22 09:22:56 2012 +0200
| | 
| |     * fix CRegressionLabels* to CBinaryLabels* in apply
| | 
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| |   
| * commit 87383f4a93723c22a67a2caf145d5931c416cc9f
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 21 23:34:46 2012 +0200
| | 
| |     + return problem type in more classifiers
| | 
| | M	src/shogun/classifier/AveragedPerceptron.h
| | M	src/shogun/classifier/LDA.h
| | M	src/shogun/classifier/LPBoost.h
| | M	src/shogun/classifier/LPM.h
| | M	src/shogun/classifier/NearestCentroid.h
| | M	src/shogun/classifier/Perceptron.h
| | M	src/shogun/classifier/PluginEstimate.h
| | M	src/shogun/classifier/SubGradientLPM.h
| | M	src/shogun/classifier/svm/LibLinear.h
| | M	src/shogun/classifier/svm/NewtonSVM.h
| | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | M	src/shogun/classifier/svm/SGDQN.h
| | M	src/shogun/classifier/svm/SVM.h
| | M	src/shogun/classifier/svm/SVMLin.h
| | M	src/shogun/classifier/svm/SVMOcas.h
| | M	src/shogun/classifier/svm/SVMSGD.h
| | M	src/shogun/classifier/svm/SubGradientSVM.h
| | M	src/shogun/classifier/svm/WDSVMOcas.h
| | M	src/shogun/classifier/vw/VowpalWabbit.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/multiclass/ConjugateIndex.h
| | M	src/shogun/multiclass/GaussianNaiveBayes.h
| | M	src/shogun/multiclass/KNN.h
| | M	src/shogun/multiclass/MulticlassLibLinear.h
| | M	src/shogun/multiclass/MulticlassOCAS.h
| | M	src/shogun/multiclass/MulticlassSVM.h
| |   
| * commit 1c2a8d68654fc0d1bebc000cc25dc039f7de33f1
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Mon May 21 23:11:37 2012 +0200
|   
|       + problem type macro in Machine and + return PT in QDA
|   
|   M	src/shogun/machine/Machine.h
|   M	src/shogun/multiclass/QDA.h
|  
* commit b420b4050b22c2f2eb5728426ab97370e33c6906
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 08:14:44 2012 +0200
| 
|     use more fine grained %rename of apply() to get converters back to work
| 
| M	src/interfaces/modular/Machine.i
|  
* commit 97ca1754b574a5ee32d90fa541bde31ecf0439a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 08:02:51 2012 +0200
| 
|     fix python modular example for new label system
| 
| M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| M	examples/undocumented/python_modular/classifier_qda_modular.py
| M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| M	examples/undocumented/python_modular/evaluation_clustering.py
| M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| M	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| M	examples/undocumented/python_modular/kernel_director_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| M	examples/undocumented/python_modular/modelselection_grid_search_krr_modular.py
| M	examples/undocumented/python_modular/modelselection_grid_search_liblinear_modular.py
| M	examples/undocumented/python_modular/modelselection_grid_search_libsvr_modular.py
| M	examples/undocumented/python_modular/regression_kernel_ridge_modular.py
| M	examples/undocumented/python_modular/regression_least_squares_modular.py
| M	examples/undocumented/python_modular/regression_libsvr_modular.py
| M	examples/undocumented/python_modular/regression_linear_ridge_modular.py
| M	examples/undocumented/python_modular/regression_svrlight_modular.py
| M	examples/undocumented/python_modular/serialization_complex_example.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
|  
* commit 3fc4ec52399bc4e136bebf74018cdd914b5fda3f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 03:54:12 2012 +0400
| 
|     Removed junk methods from DistanceMachine
| 
| M	src/shogun/machine/DistanceMachine.h
|  
* commit 6f44838f6ed52c91632ea3f7b7e145b56c6c215d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 03:46:17 2012 +0400
| 
|     Renamed LT_REAL to LT_REGRESSIONw
| 
| M	src/shogun/evaluation/MeanAbsoluteError.cpp
| M	src/shogun/evaluation/MeanSquaredError.cpp
| M	src/shogun/evaluation/MeanSquaredLogError.cpp
| M	src/shogun/labels/LabelTypes.h
| M	src/shogun/labels/Labels.h
| M	src/shogun/labels/RegressionLabels.cpp
| M	src/shogun/regression/KernelRidgeRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/regression/svr/LibSVR.cpp
|  
* commit 650df096f3f6ed2322b997e2a41208c1ff747f7a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 03:42:51 2012 +0400
| 
|     Fixes for binary evaluations
| 
| M	src/shogun/evaluation/BinaryClassEvaluation.h
| M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| M	src/shogun/evaluation/ContingencyTableEvaluation.h
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/PRCEvaluation.h
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.h
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/BinaryLabels.h
|  
* commit ee2e5c3ed7254642c371b4ef9771435452a8a618
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 23:34:23 2012 +0200
| 
|     fix a few MC examples
| 
| M	examples/undocumented/libshogun/classifier_conjugateindex.cpp
| M	examples/undocumented/libshogun/classifier_gaussiannaivebayes.cpp
| M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| M	examples/undocumented/libshogun/classifier_qda.cpp
|  
* commit 6d21091b791f29b75bc99d7a96a177ede0336c54
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 01:25:20 2012 +0400
| 
|     Restored apply_one method of multiclass machine
| 
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
|  
* commit 18e1c36692d36abd21c43100ce591c4076151e53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 23:16:54 2012 +0200
| 
|     fix various python examples
| 
| M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| M	examples/undocumented/python_modular/classifier_conjugateindex_modular.py
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| M	examples/undocumented/python_modular/classifier_knn_modular.py
| M	examples/undocumented/python_modular/classifier_larank_modular.py
| M	examples/undocumented/python_modular/classifier_lda_modular.py
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
|  
* commit eb10996455cd9994f65cdf7dc9b753f57caeac20
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 23:16:25 2012 +0200
| 
|     rename apply(idx) -> apply_one(idx)
| 
| M	src/shogun/multiclass/ConjugateIndex.cpp
| M	src/shogun/multiclass/ConjugateIndex.h
| M	src/shogun/multiclass/KNN.h
|  
* commit 582339ae13415eaf22213a1dbd2278e720d58556
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 23:07:19 2012 +0200
| 
|     fix remaining libshogun examples for new label system
| 
| M	examples/undocumented/libshogun/classifier_libsvm.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| M	examples/undocumented/libshogun/features_subset_labels.cpp
| M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
|  
* commit 0135ad13f2d80cdbee45d44b295934beb0abe940
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 22:51:34 2012 +0200
| 
|     various fixes for libshogun examples
| 
| M	examples/undocumented/libshogun/classifier_conjugateindex.cpp
| M	examples/undocumented/libshogun/classifier_gaussiannaivebayes.cpp
| M	examples/undocumented/libshogun/classifier_libsvm.cpp
| M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
| M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| M	examples/undocumented/libshogun/classifier_qda.cpp
| M	examples/undocumented/libshogun/clustering_kmeans.cpp
| M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| M	examples/undocumented/libshogun/splitting_standard_crossvalidation.cpp
| M	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
|  
* commit 3ebb29fb67b6a2354c317e1a415d2caeb4a34448
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 22 00:35:04 2012 +0400
| 
|     Rebased QDA
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| D	src/shogun/classifier/QDA.cpp
| D	src/shogun/classifier/QDA.h
| A	src/shogun/multiclass/QDA.cpp
| A	src/shogun/multiclass/QDA.h
|  
* commit a58f1ba12acfd513cb15d02c280c8707c42e231d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 22:19:06 2012 +0200
| 
|     introduce macros to easy apply renaming
| 
| M	src/interfaces/modular/Machine.i
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/PluginEstimate.h
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/GaussianProcessRegression.h
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/ui/GUIPluginEstimate.cpp
| M	src/shogun/ui/GUIPluginEstimate.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit ea8b245c907081d6e3255b403f54e2e091af3199
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 23:36:28 2012 +0400
| 
|     Made GaussianNaiveBayes a multiclass machine
|     
|     - Added NativeMulticlassMachine for classifiers without submachines
| 
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| A	src/shogun/machine/NativeMulticlassMachine.h
| M	src/shogun/multiclass/GaussianNaiveBayes.cpp
| M	src/shogun/multiclass/GaussianNaiveBayes.h
|  
* commit 3c632445ef5e8f611c25d242afbc4be6987e6fc3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 23:13:16 2012 +0400
| 
|     Renamed RealLabels to RegressionLabels
| 
| M	src/interfaces/modular/Evaluation_includes.i
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/Features_includes.i
| M	src/interfaces/modular/Machine.i
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/evaluation/MeanAbsoluteError.cpp
| M	src/shogun/evaluation/MeanSquaredError.cpp
| M	src/shogun/evaluation/MeanSquaredLogError.cpp
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparseFeatures.h
| D	src/shogun/labels/RealLabels.cpp
| D	src/shogun/labels/RealLabels.h
| A	src/shogun/labels/RegressionLabels.cpp
| A	src/shogun/labels/RegressionLabels.h
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/machine/OnlineLinearMachine.cpp
| M	src/shogun/machine/OnlineLinearMachine.h
| M	src/shogun/multiclass/GaussianNaiveBayes.cpp
| M	src/shogun/multiclass/KNN.cpp
| M	src/shogun/multiclass/ScatterSVM.cpp
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/KernelRidgeRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/regression/LinearRidgeRegression.cpp
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.h
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| M	src/shogun/ui/GUIHMM.cpp
| M	src/shogun/ui/GUIHMM.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 5ebbde4d442d45a119ba91e2c022397e044fc9e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:58:17 2012 +0200
| 
|     fix libsvm py example
| 
| M	examples/undocumented/python_modular/classifier_libsvm_modular.py
|  
* commit 6b26c7a42e4c0f517f9e590310a6ac98ea6ea7f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:57:30 2012 +0200
| 
|     output some more reasonable error messages in CMachine::apply_* methods
| 
| M	src/shogun/machine/Machine.cpp
|  
* commit 518d2dca36ae2afa10bc820e85f6a9b3c66a7992
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 22:56:27 2012 +0400
| 
|     Removed junk methods from multiclass machine
| 
| M	src/shogun/machine/MulticlassMachine.h
|  
* commit d07511b21c3cffcd3b44c2dc477d54ad2e996371
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 22:54:36 2012 +0400
| 
|     Renamed EClassifierType to EMachineType
| 
| M	src/shogun/classifier/AveragedPerceptron.h
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/LPBoost.h
| M	src/shogun/classifier/LPM.h
| M	src/shogun/classifier/Perceptron.h
| M	src/shogun/classifier/QDA.h
| M	src/shogun/classifier/SubGradientLPM.h
| M	src/shogun/classifier/mkl/MKLClassification.h
| M	src/shogun/classifier/mkl/MKLMulticlass.h
| M	src/shogun/classifier/mkl/MKLOneClass.h
| M	src/shogun/classifier/svm/CPLEXSVM.h
| M	src/shogun/classifier/svm/GNPPSVM.h
| M	src/shogun/classifier/svm/GPBTSVM.h
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/classifier/svm/LibSVM.h
| M	src/shogun/classifier/svm/LibSVMOneClass.h
| M	src/shogun/classifier/svm/MPDSVM.h
| M	src/shogun/classifier/svm/NewtonSVM.h
| M	src/shogun/classifier/svm/OnlineSVMSGD.h
| M	src/shogun/classifier/svm/SGDQN.h
| M	src/shogun/classifier/svm/SVMLight.h
| M	src/shogun/classifier/svm/SVMLightOneClass.h
| M	src/shogun/classifier/svm/SVMLin.h
| M	src/shogun/classifier/svm/SVMOcas.h
| M	src/shogun/classifier/svm/SVMSGD.h
| M	src/shogun/classifier/svm/SubGradientSVM.h
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/Hierarchical.h
| M	src/shogun/clustering/KMeans.h
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
| M	src/shogun/multiclass/ConjugateIndex.h
| M	src/shogun/multiclass/GMNPSVM.h
| M	src/shogun/multiclass/GaussianNaiveBayes.h
| M	src/shogun/multiclass/KNN.h
| M	src/shogun/multiclass/LaRank.h
| M	src/shogun/multiclass/MulticlassLibSVM.h
| M	src/shogun/multiclass/ScatterSVM.h
| M	src/shogun/regression/GaussianProcessRegression.h
| M	src/shogun/regression/KernelRidgeRegression.h
| M	src/shogun/regression/LeastAngleRegression.h
| M	src/shogun/regression/LeastSquaresRegression.h
| M	src/shogun/regression/LinearRidgeRegression.h
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/LibSVR.h
| M	src/shogun/regression/svr/MKLRegression.h
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/regression/svr/SVRLight.h
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.h
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.h
| M	src/shogun/ui/GUIClassifier.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit dfa602ed36bec563f0f8e04804116ff6335b62c6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 22:39:09 2012 +0400
| 
|     Replaced apply with apply_one in distance machine
| 
| M	src/shogun/machine/DistanceMachine.h
|  
* commit f09a2effdc6eaf27b4d91f0730df244029d361a9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 22:38:53 2012 +0400
| 
|     Updated gitignore
| 
| M	.gitignore
|  
* commit 71c89a43d54f5a38510dd989d89168a2775c1bf7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:36:34 2012 +0200
| 
|     rename apply -> apply_one
| 
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/DistanceMachine.h
|  
* commit 0681fe0a1b7edd0fc2dc2dbb07e77939a9e4f8a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:04:59 2012 +0200
| 
|     do apply() renames in typemaps + misc fixes in labels
| 
| A	src/interfaces/modular/Machine.i
| M	src/interfaces/modular/modshogun.i
| M	src/shogun/labels/BinaryLabels.cpp
| M	src/shogun/labels/BinaryLabels.h
| M	src/shogun/labels/MulticlassLabels.cpp
| M	src/shogun/labels/MulticlassLabels.h
| M	src/shogun/labels/RealLabels.cpp
| M	src/shogun/labels/RealLabels.h
| M	src/shogun/machine/DistanceMachine.h
|  
* commit a3e7ebd9bc43ea0c22744edffb0bc7b0c4079375
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 19:47:07 2012 +0200
| 
|     apply -> apply_one
| 
| M	src/shogun/machine/MulticlassMachine.cpp
|  
* commit 1c696c45e0c9076f7ebfd8530bf7971e60e1c441
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 21:34:04 2012 +0400
| 
|     Refactoring of apply() methods
|     
|     - apply() of CMachine now calls
|       one of appropriate apply_binary(), apply_regression() or apply_multiclass()
|     - apply(int32_t) renamed to apply_one(int32_t)
| 
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/Perceptron.cpp
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/multiclass/ScatterSVM.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.h
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.h
| M	src/shogun/ui/GUIClassifier.cpp
|    
*   commit 35f262c50fc3450662b8abf2902b691df4869b89
|\  Merge: f1869d9 81a9c3b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 21 02:41:27 2012 -0700
| | 
| |     Merge pull request #537 from iglesias/fix-labels
| |     
| |     add type casting functions that enable CLabel -> CMulticlassLabel etc conversion
| |   
| * commit 81a9c3bdadd2b09cd7f73460a2e049b1f8dccf21
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 21 11:27:43 2012 +0200
| | 
| |     + obtain from generic Labels in sub-label classes
| | 
| | M	src/shogun/labels/BinaryLabels.cpp
| | M	src/shogun/labels/BinaryLabels.h
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| | M	src/shogun/labels/RealLabels.cpp
| | M	src/shogun/labels/RealLabels.h
| |   
| * commit ecc1f4a1a8c6ac73c7e0819d1f9fe8b00bb60616
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Mon May 21 11:16:51 2012 +0200
| | 
| |     + helper function to obtain MulticlassLabels from Labels, - previous constructor
| | 
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/MulticlassLabels.h
| |   
| * commit 9f5165d510638fd6477185fd07f1fcda18f6bba8
|/  Author: iglesias <fernando.iglesiasg@gmail.com>
|   Date:   Mon May 21 10:36:39 2012 +0200
|   
|       + constructor from base class in multiclass labels
|   
|   M	src/shogun/labels/MulticlassLabels.cpp
|   M	src/shogun/labels/MulticlassLabels.h
|  
* commit f1869d9f5fa90294f744d2d73415bf4652126e42
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 04:59:12 2012 +0400
| 
|     Moved GNB to multiclass folder
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| D	src/shogun/classifier/GaussianNaiveBayes.cpp
| D	src/shogun/classifier/GaussianNaiveBayes.h
| A	src/shogun/multiclass/GaussianNaiveBayes.cpp
| A	src/shogun/multiclass/GaussianNaiveBayes.h
|  
* commit 28a4e75a5ae6590e43f2cbdb3201386aede31a6a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 21 04:46:23 2012 +0400
| 
|     Merged apply() and apply(CFeatures* data) into apply(CFeatures* data=NULL)
| 
| M	src/shogun/classifier/GaussianNaiveBayes.cpp
| M	src/shogun/classifier/GaussianNaiveBayes.h
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/PluginEstimate.h
| M	src/shogun/classifier/QDA.cpp
| M	src/shogun/classifier/QDA.h
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/Hierarchical.h
| M	src/shogun/lib/external/shogun_liblinear.cpp
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/machine/Machine.h
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
| M	src/shogun/machine/OnlineLinearMachine.cpp
| M	src/shogun/machine/OnlineLinearMachine.h
| M	src/shogun/multiclass/ConjugateIndex.cpp
| M	src/shogun/multiclass/ConjugateIndex.h
| M	src/shogun/multiclass/KNN.cpp
| M	src/shogun/multiclass/KNN.h
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/GaussianProcessRegression.h
|  
* commit 02a85da599e63fb663e4ff6a7af85f41b8be1df1
| Author: iglesias <fernando.iglesiasg@gmail.com>
| Date:   Mon May 21 02:01:39 2012 +0200
| 
|     ~ RealLabels to MulticlassLabels in QDA
| 
| M	src/shogun/classifier/QDA.cpp
|    
*   commit 7360212f9228c69008d02ef286145a6412dce634
|\  Merge: 1174967 42c072b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon May 21 02:20:17 2012 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 42c072b2b01f7757b7bdf0b6affdc46175afe88f
| |\  Merge: 98d986a 3b98f46
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun May 20 11:41:40 2012 -0700
| | | 
| | |     Merge pull request #535 from pluskid/multiclass-ecoc
| | |     
| | |     Fix compile warning.
| | |    
| | * commit 3b98f4607bdce067fbcd84422e15c109ee4527ae
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun May 20 23:05:36 2012 +0800
| | | 
| | |     Use size_t instead of index_t for std::vector
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | |    
| | * commit 70ec3785154948ff52bfd375eaf78f6be8d82df1
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Sun May 20 22:48:11 2012 +0800
| | | 
| | |     Fix compile error.
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | |    
| * | commit 98d986a4dcec2019a94e83bc6e2fd9e36b020c89
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun May 20 20:25:45 2012 +0200
| | | 
| | |     fix doc of reallabels
| | | 
| | | M	src/shogun/labels/RealLabels.h
| | |    
* | | commit 1174967667c0ec323ef0bd0c0cfd6484d8566dff
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Mon May 21 02:20:02 2012 +0400
| |   
| |       Some labels refactoring
| |   
| |   M	src/shogun/labels/BinaryLabels.cpp
| |   M	src/shogun/labels/BinaryLabels.h
| |   M	src/shogun/labels/DenseLabels.cpp
| |   M	src/shogun/labels/DenseLabels.h
| |   M	src/shogun/labels/MulticlassLabels.cpp
| |   M	src/shogun/labels/MulticlassLabels.h
| |   M	src/shogun/labels/RealLabels.cpp
| |   
* | commit 23dd287991843c6cf9014c2ce5adbdf61c95708b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 20 20:13:47 2012 +0200
| | 
| |     fix libsvm example and don't call pure virtual method (indirectly in constructor)
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	src/shogun/labels/BinaryLabels.cpp
| | M	src/shogun/labels/DenseLabels.cpp
| | M	src/shogun/labels/DenseLabels.h
| | M	src/shogun/labels/MulticlassLabels.cpp
| | M	src/shogun/labels/RealLabels.cpp
| |     
* |   commit babacd0cf062cb8e007cd6db160ad6955f067a7d
|\ \  Merge: 7be351c c559d00
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun May 20 07:45:13 2012 -0700
| |   
| |       Merge pull request #534 from pluskid/multiclass-ecoc
| |       
| |       Multiclass ecoc
| |   
| * commit c559d008a383f3792597f73a93fe2d0810c9a4db
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun May 20 21:38:42 2012 +0800
| | 
| |     Added modular interface for LLB Decoder
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| |   
| * commit 869399d001b766085fea72e1f560d0e0ec4217b7
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun May 20 21:13:01 2012 +0800
| | 
| |     Added Margin Loss Decoder
| | 
| | A	src/shogun/multiclass/ecoc/ECOCLLBDecoder.cpp
| | A	src/shogun/multiclass/ecoc/ECOCLLBDecoder.h
| |     
* |   commit 7be351c1ca33857a82f0f04ad9c05c6300708e20
|\ \  Merge: a3eef1a d27553f
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Sun May 20 07:44:36 2012 -0700
| |   
| |       Merge pull request #533 from iglesias/qda
| |       
| |       Minor changes in QDA
| |   
| * commit d27553f5b7294196f50d90dc38a9275591c5c5c9
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Fri May 18 18:18:04 2012 +0200
| | 
| |     ~ change qda parameters->add to SG_ADD
| | 
| | M	src/shogun/classifier/QDA.cpp
| |   
| * commit 0300a6953d96c3a48c8797f102d554d903996271
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Apr 7 21:36:02 2012 +0200
| | 
| |     + little doc QDA #418
| | 
| | M	src/shogun/classifier/QDA.h
| |   
* | commit a3eef1a1313235d9111ab4a26d36f8de3a38f698
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun May 20 17:12:33 2012 +0400
| | 
| |     Fixed compilation of DA MC Liblinear
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.h
| |   
* | commit 4410fdddba046c2653537063d734f3c525673ac6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 18 19:55:00 2012 +0200
| | 
| |     Split up CLabels into various classes:
| |     
| |     CLabels -> CDenseLabels -> CRealLabels
| |     						-> CBinaryLabels
| |     						-> CMulticlassLabels
| |     						-> CRealLabels
| |     
| |     - put labels under shogun/labels/
| |     - change include paths in all files
| |     - CMachine still returns a generic CLabels object in its apply()
| |     	function - but submachines create customized CRealLabels,
| |     	CMulticlassLabels etc objects.
| |     - all machines now check if their train function is called with matching
| |     label type
| |     - type of label object can be determined via label->get_label_type()
| |     - introduce confidences in labels
| |     - introduce set_to_const function in labels
| | 
| | M	src/README.developer
| | M	src/interfaces/modular/Evaluation_includes.i
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Features_includes.i
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/NearestCentroid.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/PluginEstimate.h
| | M	src/shogun/classifier/QDA.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/SubGradientLPM.h
| | M	src/shogun/classifier/mkl/MKLClassification.cpp
| | M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MPDSVM.h
| | M	src/shogun/classifier/svm/NewtonSVM.cpp
| | M	src/shogun/classifier/svm/NewtonSVM.h
| | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SGDQN.h
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMLin.h
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMOcas.h
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVMSGD.h
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.h
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.h
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distributions/LinearHMM.h
| | M	src/shogun/evaluation/BinaryClassEvaluation.h
| | M	src/shogun/evaluation/ClusteringAccuracy.cpp
| | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | M	src/shogun/evaluation/ClusteringEvaluation.h
| | M	src/shogun/evaluation/ClusteringMutualInformation.cpp
| | M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | M	src/shogun/evaluation/CrossValidationSplitting.cpp
| | M	src/shogun/evaluation/Evaluation.h
| | M	src/shogun/evaluation/MeanAbsoluteError.cpp
| | M	src/shogun/evaluation/MeanAbsoluteError.h
| | M	src/shogun/evaluation/MeanSquaredError.cpp
| | M	src/shogun/evaluation/MeanSquaredError.h
| | M	src/shogun/evaluation/MeanSquaredLogError.cpp
| | M	src/shogun/evaluation/MeanSquaredLogError.h
| | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | M	src/shogun/evaluation/MulticlassAccuracy.h
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/evaluation/SplittingStrategy.cpp
| | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/Features.h
| | D	src/shogun/features/Labels.cpp
| | D	src/shogun/features/Labels.h
| | M	src/shogun/features/SparseFeatures.cpp
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/AUCKernel.h
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | A	src/shogun/labels/BinaryLabels.cpp
| | A	src/shogun/labels/BinaryLabels.h
| | A	src/shogun/labels/DenseLabels.cpp
| | A	src/shogun/labels/DenseLabels.h
| | A	src/shogun/labels/LabelTypes.h
| | A	src/shogun/labels/Labels.cpp
| | A	src/shogun/labels/Labels.h
| | A	src/shogun/labels/MulticlassLabels.cpp
| | A	src/shogun/labels/MulticlassLabels.h
| | A	src/shogun/labels/RealLabels.cpp
| | A	src/shogun/labels/RealLabels.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/DistanceMachine.h
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/Machine.cpp
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.cpp
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.h
| | M	src/shogun/multiclass/ConjugateIndex.cpp
| | M	src/shogun/multiclass/GMNPSVM.cpp
| | M	src/shogun/multiclass/KNN.cpp
| | M	src/shogun/multiclass/LaRank.cpp
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassLibSVM.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| | M	src/shogun/multiclass/ScatterSVM.cpp
| | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
| | M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
| | M	src/shogun/regression/GaussianProcessRegression.cpp
| | M	src/shogun/regression/KernelRidgeRegression.cpp
| | M	src/shogun/regression/KernelRidgeRegression.h
| | M	src/shogun/regression/LeastAngleRegression.cpp
| | M	src/shogun/regression/LinearRidgeRegression.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| | M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIFeatures.h
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIHMM.h
| | M	src/shogun/ui/GUILabels.cpp
| | M	src/shogun/ui/GUILabels.h
| | M	src/shogun/ui/GUIPluginEstimate.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit a09eab4b7756bfdcaf58874d083ede3c5d19ada7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu May 10 23:10:49 2012 +0400
| | 
| |     Added DomainAdaptationMulticlassLibLinear
| | 
| | M	src/interfaces/modular/Transfer.i
| | M	src/interfaces/modular/Transfer_includes.i
| | M	src/shogun/lib/external/shogun_liblinear.cpp
| | M	src/shogun/lib/external/shogun_liblinear.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassLibLinear.h
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.cpp
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationMulticlassLibLinear.h
| |   
* | commit 29d17e8f3597ca3f90c9ff5f6ed73b36041c6f7c
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri May 18 19:39:23 2012 +0200
|   
|       remove vec_index
|   
|   M	src/interfaces/matlab_static/MatlabInterface.cpp
|   M	src/interfaces/octave_static/OctaveInterface.cpp
|   M	src/interfaces/python_static/PythonInterface.cpp
|  
* commit 95352a2e679c095150552b8910c3cb46c16a1c1e
| Author: iglesias <fernando.iglesiasg@gmail.com>
| Date:   Fri May 18 01:33:01 2012 +0200
| 
|     * minor indent fix in SGMatrix
| 
| M	src/shogun/lib/SGMatrix.h
|  
* commit 649368627306cf6def74df5e487ae31fac50e4f9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri May 18 01:13:04 2012 +0400
| 
|     Removed SKLTSA algorithm
| 
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| D	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.cpp
| D	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.h
|  
* commit 6627f5e1fbd8a34b67436168e2026b13f4c35ba9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu May 17 02:18:38 2012 +0400
| 
|     Fixed function introduced in the last commit
| 
| M	src/shogun/features/Labels.cpp
|  
* commit d368750b8564ed9787217a4c35e1554a9268c3cb
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu May 17 01:59:04 2012 +0400
| 
|     Added get_binary_for_class method that presents multiclass labels as binary subtask
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
|  
* commit 553582d04986d3914e2e8a2caa921f94ae2f4f72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 16 21:40:02 2012 +0200
| 
|     just use i for vector index in examples
|     
|     NOTE: does not correspond to real vector index in sparse fm
| 
| M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
|  
* commit edbc89fb2360e8eee929817015cd6c1c988028c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 16 20:58:22 2012 +0200
| 
|     drop vec_index from SGSparseVector
|     
|     - drop it from file formats
|     - typemaps
|     - parameters
| 
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/python_modular/swig_typemaps.i
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparseFeatures.h
| M	src/shogun/features/StreamingSparseFeatures.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/SerializableAsciiFile.cpp
| M	src/shogun/io/SerializableAsciiFile.h
| M	src/shogun/io/SerializableAsciiReader00.cpp
| M	src/shogun/io/SerializableAsciiReader00.h
| M	src/shogun/io/SerializableFile.cpp
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/io/SerializableHdf5File.cpp
| M	src/shogun/io/SerializableHdf5File.h
| M	src/shogun/io/SerializableHdf5Reader00.cpp
| M	src/shogun/io/SerializableHdf5Reader00.h
| M	src/shogun/io/SerializableJsonFile.cpp
| M	src/shogun/io/SerializableJsonFile.h
| M	src/shogun/io/SerializableJsonReader00.cpp
| M	src/shogun/io/SerializableJsonReader00.h
| M	src/shogun/io/SerializableXmlFile.cpp
| M	src/shogun/io/SerializableXmlFile.h
| M	src/shogun/io/SerializableXmlReader00.cpp
| M	src/shogun/io/SerializableXmlReader00.h
| M	src/shogun/lib/SGSparseVector.h
|    
*   commit b936490afe8e3ab5e2ab0f59628d5c3da44db499
|\  Merge: 0cb00b7 e59a334
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 16 06:38:19 2012 -0700
| | 
| |     Merge pull request #527 from pluskid/multiclass-ecoc
| |     
| |     Multiclass ecoc
| |   
| * commit e59a334fefd35ca10e4887a55245832b4e856d19
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Wed May 16 21:29:41 2012 +0800
| | 
| |     use SG_ADD instead of m_parameters->add
| | 
| | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | M	src/shogun/multiclass/ecoc/ECOCForestEncoder.cpp
| |   
| * commit 7220b43cb5ecbd9c6dbb1d35ede8ac07a0daf729
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 15 23:25:27 2012 +0800
| | 
| |     Added test case that covers all ecoc encoder/decoder pairs
| | 
| | A	examples/undocumented/python_modular/classifier_multiclass_ecoc.py
| |   
| * commit 62a253c9c2585ebff09b1f4fd4b6004870488f94
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 15 23:25:11 2012 +0800
| | 
| |     Fixed bug in ECOCRandomDense Encoder
| | 
| | M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.cpp
| |   
| * commit 4bdc5c46948f685c9d1bef7500571915aad76bfd
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 15 23:10:14 2012 +0800
| | 
| |     Fix bug in ECOC OvO encoder
| | 
| | M	src/shogun/multiclass/ecoc/ECOCOVOEncoder.cpp
| |   
| * commit 72b968d9fabb8c1c63a5ede50dd9b52ad54a4a2d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue May 15 22:26:16 2012 +0800
| | 
| |     Added ForestECOCEncoder
| | 
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
| | A	src/shogun/multiclass/ecoc/ECOCForestEncoder.cpp
| | A	src/shogun/multiclass/ecoc/ECOCForestEncoder.h
| |   
* | commit 0cb00b7bfd13443c9c3941282db7919543cbbb5b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed May 16 11:45:47 2012 +0400
| | 
| |     Restored data in ASP
| | 
| | A	applications/asp/data
| |     
* |   commit 8e313156c95aedb422163de055f3f56ddca57388
|\ \  Merge: 91865b3 500eca5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed May 16 11:44:55 2012 +0400
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit 500eca56c1561331c57fc8370860dde0abea40ac
| |\ \  Merge: 73417ed 2288c22
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 15 20:33:35 2012 -0700
| | | | 
| | | |     Merge pull request #530 from iglesias/fix-indent
| | | |     
| | | |     Minor fixes isolated
| | | |     
| | * | commit 2288c22dcb51ff906bc84953949ba5c2529dafa3
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Mon May 14 16:00:15 2012 +0200
| | | | 
| | | |     * minor fixes
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | |     
| | * | commit 07062d691c6e30099eac39c88d0592c3792db5a5
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Mon May 14 15:59:28 2012 +0200
| | | | 
| | | |     * minor indent fixes
| | | | 
| | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | M	src/shogun/machine/MulticlassMachine.h
| | | |     
| | * | commit cec4b328d25d453b39892b21424e99437c2a76f0
| |/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |   Date:   Tue May 15 21:59:46 2012 +0200
| | |   
| | |       * minor indent fix in DotFeatures
| | |   
| | |   M	src/shogun/features/DotFeatures.cpp
| | |      
| * |   commit 73417ed0626f112b982a24e4d8f18bd24b1680c8
| |\ \  Merge: 4f13a1e 31017dc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 15 12:42:38 2012 -0700
| | | | 
| | | |     Merge pull request #528 from gsomix/Arrays
| | | |     
| | | |     Fixed codestyle and doc's for DynamicArrays
| | | |     
| | * | commit 31017dc80ec75ccf09be15df73ed2ff5aac976f0
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Tue May 15 20:56:10 2012 +0400
| | | | 
| | | |     fixed codestyle and doc's
| | | | 
| | | | M	src/shogun/base/DynArray.h
| | | | M	src/shogun/lib/DynamicArray.h
| | | | M	src/shogun/lib/DynamicObjectArray.h
| | | | M	src/shogun/structure/DynProg.cpp
| | | |     
| * | | commit 4f13a1e963b84804da6e588d4814df0f9272b2dc
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue May 15 21:33:28 2012 +0200
| | |   
| | |       unconditionally use refcounting for SGVector/Matrix
| | |   
| | |   M	src/shogun/lib/SGReferencedData.h
| | |      
| * |   commit d57715da5688e1b93b38f2131d6af70fa578442e
| |\ \  Merge: ccf1a65 88ce66e
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue May 15 08:05:10 2012 -0700
| | |   
| | |       Merge pull request #524 from pluskid/multiclass-ecoc
| | |       
| | |       Multiclass ecoc
| | |    
| | * commit 88ce66e36167bebc59075ed20eab26d433357a59
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue May 15 21:03:26 2012 +0800
| | | 
| | |     refactor data preparation of multiclass python_modular.
| | | 
| | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| | | A	examples/undocumented/python_modular/classifier_multiclass_shared.py
| | | M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| | | M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| | |    
| | * commit 95301f43e8e3813d7964435bc8fc0b1a3c2a074e
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Tue May 15 20:52:57 2012 +0800
| | | 
| | |     Revert changes in Array{2,3} as they are dying in shogun
| | | 
| | | M	src/shogun/lib/Array2.h
| | | M	src/shogun/lib/Array3.h
| | |    
| | * commit fafe078b4222dcaae8663e9d9010b4ff29f0900b
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:57:02 2012 +0800
| | | 
| | |     Added python_modular interface for ECOC Decoding
| | | 
| | | M	src/interfaces/modular/Multiclass.i
| | | M	src/interfaces/modular/Multiclass_includes.i
| | |    
| | * commit 9aad5be42b0ed64a8e4ea05e77bdf92e9466e096
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:56:45 2012 +0800
| | | 
| | |     Fix bug of AEDDecoding (ecoclib gives wrong description)
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCAEDDecoder.h
| | |    
| | * commit 53657b72d064524b057af0974f3d65f961bacec8
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:28:33 2012 +0800
| | | 
| | |     Added Attenuated Euclidean decoder
| | | 
| | | A	src/shogun/multiclass/ecoc/ECOCAEDDecoder.h
| | | M	src/shogun/multiclass/ecoc/ECOCEDDecoder.h
| | | M	src/shogun/multiclass/ecoc/ECOCHDDecoder.h
| | |    
| | * commit b678b8a3be807be874b0a51b6787c2d17b79b8ea
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:21:43 2012 +0800
| | | 
| | |     Added Euclidean Distance Decoder.
| | | 
| | | A	src/shogun/multiclass/ecoc/ECOCEDDecoder.h
| | |    
| | * commit f24b769bc042193c89a7b980393db585a611c977
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:17:15 2012 +0800
| | | 
| | |     IHD is available only when lapack is presented.
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCIHDDecoder.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCIHDDecoder.h
| | |    
| | * commit 5546ad164acc269650b51e34b444b1ee8b2d149f
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:14:56 2012 +0800
| | | 
| | |     Added Inverse Hamming Decoding.
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCDecoder.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCDecoder.h
| | | M	src/shogun/multiclass/ecoc/ECOCHDDecoder.h
| | | A	src/shogun/multiclass/ecoc/ECOCIHDDecoder.cpp
| | | A	src/shogun/multiclass/ecoc/ECOCIHDDecoder.h
| | | A	src/shogun/multiclass/ecoc/ECOCSimpleDecoder.cpp
| | | A	src/shogun/multiclass/ecoc/ECOCSimpleDecoder.h
| | |    
| | * commit 2b0a0b62a7b8d2702e0184f629855f277d3f01b3
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 12:14:35 2012 +0800
| | | 
| | |     Fix clang compiling warning
| | | 
| | | M	src/shogun/lib/Array2.h
| | | M	src/shogun/lib/Array3.h
| | |    
| | * commit 5c80965c54c1a5ebaba4c60aacd61bcdc6e968bc
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Mon May 14 10:08:33 2012 +0800
| | | 
| | |     Ordinary hamming distance should not ignore 0 entries.
| | | 
| | | M	src/shogun/multiclass/ecoc/ECOCUtil.h
| | |      
| * |   commit ccf1a652273f12f651dff37dde56a4030e3a4b84
| |\ \  Merge: 1ed8aa6 03efa04
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Tue May 15 08:01:03 2012 -0700
| | |   
| | |       Merge pull request #523 from gsomix/Arrays
| | |       
| | |       CArray* to CDynamicArray conversion
| | |    
| | * commit 03efa0421bd912d3e2a1deb9bac5f7da440a8cd0
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue May 15 11:56:35 2012 +0400
| | | 
| | |     minor fixes
| | | 
| | | M	src/interfaces/modular/Library.i
| | | M	src/interfaces/modular/Library_includes.i
| | | M	src/shogun/lib/DynamicArray.h
| | |    
| | * commit ef8f1f0945532324503b31e7e611165caccbac29
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue May 15 11:55:57 2012 +0400
| | | 
| | |     CArray#<SG> -> DynamicObjectArray
| | | 
| | | M	src/shogun/lib/DynamicObjectArray.h
| | | M	src/shogun/structure/DynProg.cpp
| | | M	src/shogun/structure/DynProg.h
| | |    
| | * commit 35fa046a2893eed6bb7d7b522891d78a4b3d49e1
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sun May 13 19:56:07 2012 +0400
| | | 
| | |     removed CArray#
| | | 
| | | D	src/shogun/lib/Array.h
| | | D	src/shogun/lib/Array2.h
| | | D	src/shogun/lib/Array3.h
| | |    
| | * commit 4cbcbf9686d69982299600872b4c786f3752285c
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sun May 13 19:55:43 2012 +0400
| | | 
| | |     CArray# -> DynamicArray in kernel and ui
| | | 
| | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
| | * commit 90101c474706ac29c8cb2a0f1e3c20cafa417781
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Sun May 13 19:54:54 2012 +0400
| | | 
| | |     CArray# -> DynamicArray
| | | 
| | | M	src/shogun/structure/DynProg.cpp
| | | M	src/shogun/structure/DynProg.h
| | | M	src/shogun/structure/PlifMatrix.cpp
| | | M	src/shogun/structure/PlifMatrix.h
| | | M	src/shogun/structure/SegmentLoss.cpp
| | | M	src/shogun/structure/SegmentLoss.h
| | |    
| | * commit cd587fafa67d8c42975805e2f2fb10c124815b5e
| |/  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sun May 13 19:54:02 2012 +0400
| |   
| |       added new methods in DynamicArray
| |   
| |   M	src/shogun/base/DynArray.h
| |   M	src/shogun/lib/DynamicArray.h
| |   
| * commit 1ed8aa62584f215a2cacfcf904ba7339cac4b80b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 14 20:58:50 2012 +0200
| | 
| |     simplify lua typemaps (use sgvector & co)
| | 
| | M	src/interfaces/lua_modular/swig_typemaps.i
| |   
| * commit 14606dac0b725a121c015ea29b93736ec052f977
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 14 20:57:51 2012 +0200
| | 
| |     disable set_feature_vector from lua for now
| |     
| |     it causes a null ptr exception - swig/lua seem not to be able to convert
| |     the table into a CStringFeatures<char> object but 0x0 ...
| | 
| | M	examples/undocumented/lua_modular/features_string_char_modular.lua
| |     
| *   commit a1f7b948887dcf00b6602f7b8470656c1533f291
| |\  Merge: 6a053ed d5ce0f3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 14 10:26:10 2012 -0700
| | | 
| | |     Merge pull request #526 from karlnapf/master
| | |     
| | |     some design updates
| | |    
| | * commit d5ce0f35aedce918c3c9e9c8790b792630ac0d56
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 14 18:21:22 2012 +0100
| | | 
| | |     -some interface changes after talked to Arthur
| | |     -instead confidence parameter, test now computes p-value
| | |     -moved bootstrapping to two-sample-test-statistic to have it available for
| | |     two-sample based tests
| | |     -some minor changes and documentation updates
| | | 
| | | M	src/shogun/statistics/LinearTimeMMD.cpp
| | | M	src/shogun/statistics/LinearTimeMMD.h
| | | M	src/shogun/statistics/StatisticalTest.cpp
| | | M	src/shogun/statistics/StatisticalTest.h
| | | M	src/shogun/statistics/TestStatistic.h
| | | M	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | | M	src/shogun/statistics/TwoSampleTestStatistic.h
| | |    
| | * commit 6944d773a144c4d6eefb7d7103e17ca5ca0bbefd
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu May 10 21:48:14 2012 +0100
| |   
| |       code cleanups
| |   
| |   M	src/shogun/evaluation/CrossValidation.cpp
| |     
* |   commit 91865b38b88552e800933765167cd26e150b3f91
|\ \  Merge: 6a053ed 39d5cd2
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/|   Date:   Wed May 16 11:43:40 2012 +0400
| |   
| |       Merge branch 'master' of git://github.com/vipints/shogun
| |   
| * commit 39d5cd2e53bdbfd6265d782cd442fde181a15c6a
| | Author: vipints <vipin@cbio.mskcc.org>
| | Date:   Tue May 8 15:04:28 2012 -0400
| | 
| |     Code cleanup and updating to version 0.3
| | 
| | M	applications/asp/asp
| | D	applications/asp/dna.fa
| | M	applications/asp/genomic.py
| | M	applications/asp/model.py
| |   
| * commit c0905ab7704d45ffd71ec6b5ef70678cdef3a955
| | Author: vipints <vipin@cbio.mskcc.org>
| | Date:   Tue May 8 11:45:10 2012 -0400
| | 
| |     Updated ASP release version 0.3
| | 
| | D	applications/asp/Makefile
| | M	applications/asp/NEWS
| | M	applications/asp/README
| | D	applications/asp/convert_mat.m
| | D	applications/asp/data
| | M	applications/asp/genomic.py
| | M	applications/asp/model.py
| | M	applications/asp/seqdict.py
| | M	applications/asp/signal_detectors.py
| |   
| * commit 20cdaed38ce725e0896b3a5eb6351972d68e2e84
| | Author: vipints <vipin@cbio.mskcc.org>
| | Date:   Mon May 7 17:30:37 2012 -0400
| | 
| |     Version v0.3
| | 
| | M	applications/asp/asp
| |     
| *   commit bc57a90cbf4d03405098fc772c6658d81fe5960a
| |\  Merge: 093844a 06df04e
| | | Author: vipints <vipin@cbio.mskcc.org>
| | | Date:   Mon May 7 17:10:53 2012 -0400
| | | 
| | |     Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |     
| | |     * 'master' of git://github.com/shogun-toolbox/shogun:
| | |       added debug messages
| | |       code whitespace
| | |       fix a memory error
| | |       retun *this on self assignment
| | |       derive SGVector from SGReferencedData to avoid code duplication
| | |       Add vanilla store_model_features for LinearMulticlassMachine So one can actually do a cross-validation with multiclass linear machines
| | |       Correct the equations in comment.
| | |    
| * | commit 093844a5865395b029942b3ec5366ce86c565d15
| | | Author: Vipin <vipin@cbio.mskcc.org>
| | | Date:   Mon May 7 15:22:12 2012 -0400
| | | 
| | |     Galaxy wrapper added to ASP.
| | | 
| | | A	applications/asp/galaxy/asp.sh
| | | A	applications/asp/galaxy/asp.xml
| | |    
* | | commit 6a053ed5ebb85d7cea344c18563049a1b010cdb4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 14 17:20:51 2012 +0200
| | | 
| | |     fix valgrind error in lua typemap
| | | 
| | | M	src/interfaces/lua_modular/swig_typemaps.i
| | |    
* | | commit 5a411ffc108b30efbe351401e9d98c8d8fca719f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 14 13:21:59 2012 +0200
| | | 
| | |     remove C prefix from CSVMLightOneClass in modular interfaces
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | |    
* | | commit 3bbdf640f9632ef76fe8c499cd3daa9dcdf4e2c8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 14 09:21:39 2012 +0200
| | | 
| | |     remove left over %enddef
| | | 
| | | M	src/interfaces/lua_modular/swig_typemaps.i
| | |    
* | | commit b9918d0317a9eb33085adb60eb814554145dd14b
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun May 13 22:54:06 2012 +0200
| | | 
| | |     - replace delete[] w/ SG_FREE
| | |     - drop SGVector& typemaps
| | |     - whitespace fixes
| | | 
| | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | M	src/interfaces/java_modular/swig_typemaps.i
| | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | | M	src/interfaces/r_modular/swig_typemaps.i
| | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | | M	src/shogun/classifier/NearestCentroid.cpp
| | | M	src/shogun/classifier/mkl/MKL.cpp
| | | M	src/shogun/lib/external/ssl.cpp
| | | M	src/shogun/mathematics/Math.cpp
| | | M	src/shogun/mathematics/munkres.cpp
| | | M	src/shogun/multiclass/KNN.cpp
| | |    
* | | commit 4580054b654bff91f12558c1ed0274ac94ef85af
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun May 13 19:49:07 2012 +0200
| | | 
| | |     fix csharp compile error
| | | 
| | | M	src/interfaces/modular/modshogun_ignores.i
| | |      
* | |   commit e203911ac59c2789c2572142519a6f409278141e
|\ \ \  Merge: a9b170f 0311c17
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun May 13 14:25:38 2012 +0400
| | | | 
| | | |     Merge branch 'multiclass-ecoc' of https://github.com/pluskid/shogun
| | | |     
| * | | commit 0311c172025ae232fe09157d3b57e7d3c6b877b0
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Sat May 12 11:25:23 2012 +0800
| | | | 
| | | |     Added interface to change sffs_iterations.
| | | | 
| | | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| | | | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
| | | |     
| * | | commit 871fe413364397155c63205e8bb126d6d4d5921a
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 23:17:34 2012 +0800
| | | | 
| | | |     Also tested OVR and ECOCOVR on the digit dataset
| | | |     
| | | |     OVR    : 0.9452
| | | |     ECOCOVR: 0.8911
| | | | 
| | | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| | | |     
| * | | commit 555bbe21ff4d5336abba77baccf05096b2274072
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 23:04:48 2012 +0800
| | | | 
| | | |     Test example of ECOC on uci-20070111 optdigits
| | | |     
| | | |     MC Accuracy, some reference results (liblinear as base classifier):
| | | |      * DiscriminantECOC: 0.8206
| | | |      * RandomDense:      0.9043
| | | |      * RandomSparse:     0.9274
| | | |     
| | | |     and some reference number from mldata site:
| | | |      * KNN (k=1)         0.9800
| | | |      * KNN (k=5)         0.9789
| | | |      * KNN (k=10)        0.9755
| | | | 
| | | | A	examples/undocumented/python_modular/classifier_multiclass_ecoc_discriminant.py
| | | | M	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| | | |     
| * | | commit d6fe6b0e46dc1f02387310eb0b5cc4317eac566f
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 23:04:24 2012 +0800
| | | | 
| | | |     Fixed bug in Discriminant ECOC.
| | | | 
| | | | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | | |     
| * | | commit 1464dc6fc6e9c1ab24a2035dca1a9473c0cff10e
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 23:03:48 2012 +0800
| | | | 
| | | |     Added python_modular interface for DiscriminantECOC
| | | | 
| | | | M	src/interfaces/modular/Multiclass.i
| | | | M	src/interfaces/modular/Multiclass_includes.i
| | | |     
| * | | commit ead3157df89ef69d8027e03baf22e669acf21178
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 21:50:34 2012 +0800
| | | | 
| | | |     Fix libshogun examples with new SGMatrix interface.
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_discriminant.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| | | |     
| * | | commit 23ba088efb90cb6fa85da633903339842517379c
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 21:35:20 2012 +0800
| | | | 
| | | |     Added doc for DECOC Encoder.
| | | | 
| | | | M	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
| | | |     
| * | | commit db74e66bfa90020e6bd2227ad5ae4e0da9c0a2f5
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Fri May 11 21:30:29 2012 +0800
| | | | 
| | | |     Discriminant ECOC Encoder.
| | | | 
| | | | A	examples/undocumented/libshogun/classifier_multiclass_ecoc_discriminant.cpp
| | | | A	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.cpp
| | | | A	src/shogun/multiclass/ecoc/ECOCDiscriminantEncoder.h
| | | |     
* | | | commit a9b170f18803a278e7247244d89bdf291993c442
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun May 13 01:15:00 2012 +0400
| | | | 
| | | |     Removed a bunch of warnings at Set, Covertree and SubsetStack
| | | | 
| | | | M	src/shogun/features/SubsetStack.h
| | | | M	src/shogun/lib/JLCoverTreePoint.h
| | | | M	src/shogun/lib/Set.h
| | | |     
* | | | commit d9297bb29a3747439cb59b2cb1fd3df59b628bab
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat May 12 23:33:11 2012 +0400
| | | | 
| | | |     Made get_w() const
| | | | 
| | | | M	src/shogun/machine/LinearMachine.h
| | | |     
* | | | commit 9ed89dfeef885cd98c88dff3f6d1b18c14016cc1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat May 12 23:32:34 2012 +0400
| | | | 
| | | |     Updated handling of internal vectors and matrices in PositionalPWM
| | | | 
| | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | M	src/shogun/distributions/PositionalPWM.h
| | | |     
* | | | commit 44639e5ab6408fc107311b481fc95f91c346f3a7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat May 12 22:53:36 2012 +0400
| | | | 
| | | |     Fixed crasher in WDStringKernel
| | | | 
| | | | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | | |     
* | | | commit f74347db617b3e7c812b9237f04ebb5453a9f286
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat May 12 22:42:19 2012 +0400
| | | | 
| | | |     Fixed crasher in KernelPCA
| | | | 
| | | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | |     
* | | | commit 7799ace92fcecb8e2e54b6732bc701582ee3d657
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat May 12 20:29:48 2012 +0200
| | | | 
| | | |     fix double free upon save_kernel()
| | | | 
| | | | M	src/shogun/kernel/Kernel.cpp
| | | |     
* | | | commit f74425fdcf0515e043a49e31e93250075b7e8775
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat May 12 20:25:40 2012 +0200
| | | | 
| | | |     compile fix - remove free_{vector,matrix} from csharp/r modular
| | | |     interfaces
| | | | 
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | | M	src/interfaces/r_modular/swig_typemaps.i
| | | |     
* | | | commit 499919b68d1f6912e640e125bc6dcb72d51a1038
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat May 12 19:16:02 2012 +0200
| | | | 
| | | |     fix get_classifier in static interface for linear machines
| | | | 
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | |     
* | | | commit 23989b1dfe47fb234bdd40d64f576ea79d1bad1f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat May 12 18:08:58 2012 +0200
| | | | 
| | | |     fix renaming simple -> dense features in examples
| | | | 
| | | | A	examples/undocumented/csharp_modular/features_dense_real_modular.cs
| | | | D	examples/undocumented/csharp_modular/features_simple_real_modular.cs
| | | | A	examples/undocumented/java_modular/features_dense_modular.java
| | | | D	examples/undocumented/java_modular/features_simple_modular.java
| | | | A	examples/undocumented/lua_modular/features_dense_real_modular.lua
| | | | D	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | | | M	examples/undocumented/python_modular/features_dense_modular.py
| | | |     
* | | | commit 030956d8ab8259e6ce86b82fc9ad12043d5f516b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri May 11 21:06:11 2012 +0200
| | | | 
| | | |     use SG_FREE instead of delete[]
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | |     
* | | | commit 8389736b6d5ac1e98257dab38a6d2feff5336f03
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri May 11 19:23:13 2012 +0200
| | | | 
| | | |     initialize empty SGVector/matrix
| | | | 
| | | | M	src/shogun/preprocessor/PCA.cpp
| | | |     
* | | | commit 27be2c25af53584f450f8daa02fee9d985f92604
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri May 11 19:23:02 2012 +0200
| | |   
| | |       fix compile error in java modular
| | |   
| | |   M	src/interfaces/modular/Library.i
| | |    
* | | commit a3c78dc9a7f6a38a9ffbfeccad4928458d0f49d7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 10 21:47:06 2012 +0200
| | | 
| | |     fix crasher in mkl / svmlight
| | | 
| | | M	src/shogun/classifier/svm/SVMLight.cpp
| | |    
* | | commit 761d82f7b9dc947d29058ab899c85ce934de2882
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 10 21:41:57 2012 +0200
| | | 
| | |     remove free_{vector,matrix} from typemaps
| | | 
| | | M	src/interfaces/java_modular/swig_typemaps.i
| | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | |    
* | | commit ba7b58e23d31ccac7b6dc017ec389dcbe8f2573f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 10 20:46:11 2012 +0200
| | | 
| | |     fix various crashers in static interface
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/shogun/ui/GUIKernel.cpp
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
* | | commit 157b9cf4cfada49fb2de9e936e7d183d733197c5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 21:46:36 2012 +0400
| | | 
| | |     Removed a few SLEP warnings
| | | 
| | | M	src/shogun/lib/slep/SpInvCoVa/invCov.cpp
| | | M	src/shogun/lib/slep/flsa/flsa.h
| | | M	src/shogun/lib/slep/slep_tree_lsr.cpp
| | |      
* | |   commit cb05dcfa049edb92050615cd29088ade9e5569f9
|\ \ \  Merge: b3a5789 43a4960
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu May 10 10:38:27 2012 -0700
| | | | 
| | | |     Merge pull request #519 from vigsterkr/master
| | | |     
| | | |     HKM: fix warning and pass vector by reference
| | | |     
| * | | commit 43a4960ea41a324942161bf61e6c264808553a10
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Thu May 10 19:25:30 2012 +0200
| | | | 
| | | |     HKM: fix warning and pass vector by reference
| | | |     No need for copying the vector on the stack it's enough to
| | | |     pass a const reference to it as we are only reading from it.
| | | | 
| | | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| | | |     
* | | | commit b3a57895fdab706fe96e1a91acaab034b2dc1760
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu May 10 19:29:16 2012 +0200
| | |   
| | |       initialize indices with NULL - this should fix the null ptr exception
| | |   
| | |   M	src/shogun/machine/KernelMachine.cpp
| | |    
* | | commit 82d5c586ba9d00c944abe0d06b2ca29c4bcef74f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 10 16:40:41 2012 +0200
| | | 
| | |     use idx
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
* | | commit 655f613bfb6a83987429f226a3324e14c933c811
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 10 16:36:31 2012 +0200
| | | 
| | |     fix subset & kernel machines
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |      
* | |   commit b31925ca478f3c8659481745070a18a2e3114ab3
|\ \ \  Merge: 0b789d0 a7c3896
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu May 10 02:31:56 2012 -0700
| | | | 
| | | |     Merge pull request #518 from vigsterkr/master
| | | |     
| | | |     Minor fixes for evaluation_cross_validation_multiclass
| | | |     
| * | | commit a7c389694646290160f20b19ce9ec69a3efa8d9e
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Thu May 10 11:28:12 2012 +0200
| | | | 
| | | |     Minor fixes for evaluation_cross_validation_multiclass
| | | |     Add the example to the Makefile and fix a typo in the example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| | | |     
* | | | commit 0b789d0cfc358ecab02e4cc09e476393cb2b3d82
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Thu May 10 11:38:06 2012 +0400
| | |   
| | |       Revert "Exposed Subset in modular #445"
| | |       
| | |       Closes #445
| | |       
| | |       This reverts commit ba71ded3a8895e5d67251aa88666af69cdac5e44.
| | |   
| | |   M	src/interfaces/modular/Features.i
| | |   M	src/interfaces/modular/Features_includes.i
| | |    
* | | commit 08d2a817ede1b2b4eb0aa97c5567f28ced6bea25
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 03:43:45 2012 +0400
| | | 
| | |     Got HKM to work
| | |     
| | |     - fixed wrong vector length in Homogeneous Kernel Map
| | |       preprocessor
| | | 
| | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | |    
* | | commit 7150b7fac68775fae1f4ee09cb824e30004fcb37
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 03:23:16 2012 +0400
| | | 
| | |     Fixed crasher in HomogeneousKernelMap
| | | 
| | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| | |    
* | | commit 0476ee757294ef14566831d5fd9bb95bc38db870
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 01:24:08 2012 +0400
| | | 
| | |     Integrated SLEP (SparseLEarningPackage) core code
| | |     
| | |     - Added simplified ported tree_leastR feature tree guided lasso
| | |     - The code is licensed by GPLv3 license accepted by the authors of the SLEP.
| | | 
| | | A	src/shogun/lib/slep/SpInvCoVa/invCov.cpp
| | | A	src/shogun/lib/slep/SpInvCoVa/invCov.h
| | | A	src/shogun/lib/slep/flsa/flsa.h
| | | A	src/shogun/lib/slep/flsa/sfa.h
| | | A	src/shogun/lib/slep/flsa/tesla_proj.cpp
| | | A	src/shogun/lib/slep/order/orderTree.h
| | | A	src/shogun/lib/slep/order/sequence.h
| | | A	src/shogun/lib/slep/overlapping/overlapping.cpp
| | | A	src/shogun/lib/slep/overlapping/overlapping.h
| | | A	src/shogun/lib/slep/q1/ep1R.h
| | | A	src/shogun/lib/slep/q1/ep21R.h
| | | A	src/shogun/lib/slep/q1/ep21d.h
| | | A	src/shogun/lib/slep/q1/eppMatrix.h
| | | A	src/shogun/lib/slep/q1/eppVector.h
| | | A	src/shogun/lib/slep/q1/eppVectorR.h
| | | A	src/shogun/lib/slep/q1/epph.h
| | | A	src/shogun/lib/slep/q1/epsgLasso.h
| | | A	src/shogun/lib/slep/q1/epsp.h
| | | A	src/shogun/lib/slep/slep_options.h
| | | A	src/shogun/lib/slep/slep_tree_lsr.cpp
| | | A	src/shogun/lib/slep/slep_tree_lsr.h
| | | A	src/shogun/lib/slep/tree/altra.cpp
| | | A	src/shogun/lib/slep/tree/altra.h
| | | A	src/shogun/lib/slep/tree/general_altra.cpp
| | | A	src/shogun/lib/slep/tree/general_altra.h
| | |    
* | | commit dadc783f51285128a8ab67a68ad1861e96ee197c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 00:34:48 2012 +0400
| | | 
| | |     Fixed bug in last commit
| | | 
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | |    
* | | commit fd6155bb23d3bcf97cb0f037d2b7148b38982959
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu May 10 00:29:27 2012 +0400
| | | 
| | |     Used () matrix element access in the MDS
| | | 
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | |    
* | | commit 62d04550fd336faa2f5d79a8b2dcb6bf5a0a9fd0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed May 9 22:52:08 2012 +0400
| | | 
| | |     Fixed Plif and PlifMatrix SGVectors handling routines
| | | 
| | | M	src/shogun/structure/Plif.cpp
| | | M	src/shogun/structure/Plif.h
| | | M	src/shogun/structure/PlifMatrix.cpp
| | |    
* | | commit 12dee975a47d6097f54316aae62d5dde17b8d246
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed May 9 20:45:49 2012 +0200
| | | 
| | |     make unref() protected
| | | 
| | | M	src/shogun/classifier/QDA.cpp
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/features/DenseFeatures.cpp
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/TOPFeatures.cpp
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | | M	src/shogun/lib/SGReferencedData.h
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | M	src/shogun/multiclass/ConjugateIndex.cpp
| | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | M	src/shogun/preprocessor/PCA.cpp
| | | M	src/shogun/ui/GUIClassifier.cpp
| | |    
* | | commit f4da908abe9515763f6863fdc43e196e26cb3d18
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed May 9 19:46:24 2012 +0400
| | | 
| | |     Fixed KRR crasher
| | | 
| | | M	src/shogun/regression/KernelRidgeRegression.cpp
| | |      
* | |   commit b9f3daf8a960739cb55411254e123d3d1e790cc5
|\ \ \  Merge: 64dd5fa bc3348b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed May 9 06:20:53 2012 -0700
| | | | 
| | | |     Merge pull request #516 from gsomix/CSet
| | | |     
| | | |     CSet and CMap improvements
| | | |     
| * | | commit bc3348bfcc786ddd68b5547349a2217a0131be64
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 17:06:50 2012 +0400
| | | | 
| | | |     another fixes in default constructors
| | | | 
| | | | M	src/shogun/lib/Map.h
| | | | M	src/shogun/lib/Set.h
| | | |     
| * | | commit 911a1e15fbc1973de3d40e2989b22bb8cefc63a8
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 17:05:05 2012 +0400
| | | | 
| | | |     fixes in default constructors
| | | | 
| | | | M	src/shogun/lib/Map.h
| | | | M	src/shogun/lib/Set.h
| | | |       
* | | |   commit 64dd5fa85553a8928d182892469580d3f4dc6720
|\ \ \ \  Merge: 734c055 1e60145
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed May 9 05:36:56 2012 -0700
| | | |   
| | | |       Merge pull request #515 from gsomix/CSet
| | | |       
| | | |       CSet and CMap
| | | |     
| * | | commit 1e60145a7da364ad8e697024dfafc7f2a4cbb17b
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 16:33:18 2012 +0400
| | | | 
| | | |     codestyle fixes
| | | | 
| | | | M	src/shogun/lib/Map.h
| | | | M	src/shogun/lib/Set.h
| | | |     
| * | | commit 642eaca38ee5ca817188421552474e68a060e97b
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 16:30:42 2012 +0400
| | | | 
| | | |     Makefile for examples
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| * | | commit 87acc7c54e85f1d45ee4cdef0f941aa12e94ab06
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 16:30:03 2012 +0400
| | | | 
| | | |     comments, example and fixes for CMap
| | | | 
| | | | A	examples/undocumented/libshogun/library_map.cpp
| | | | M	src/shogun/lib/Map.h
| | | | M	src/shogun/lib/memory.cpp
| | | |     
| * | | commit 33c094558e379d9468a459ca366ecc771b40f182
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed May 9 16:29:08 2012 +0400
| | | | 
| | | |     added CSet
| | | | 
| | | | A	examples/undocumented/libshogun/library_set.cpp
| | | | M	src/shogun/lib/Set.h
| | | |     
| * | | commit a1e4f02a0424602637efb4c4e315a405a2c1553b
|/ / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | |   Date:   Wed May 9 10:15:32 2012 +0400
| | |   
| | |       added CSet
| | |   
| | |   A	src/shogun/lib/Set.h
| | |      
* | |   commit 734c05559f8a994d7c1ca241afe8ef94851491a5
|\ \ \  Merge: b2c03ba 1c8d892
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed May 9 04:24:33 2012 -0700
| | | | 
| | | |     Merge pull request #514 from pluskid/kernelmc-store-model
| | | |     
| | | |     Use index_t instead of int32_t for index type.
| | | |     
| * | | commit 1c8d8924ecf5016e122609caac92fba7f51aac63
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Wed May 9 19:15:41 2012 +0800
| | | | 
| | | |     Use index_t instead of int32_t for index type.
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |       
* | | |   commit b2c03bace875adac3a8d3ab31365d96cceffd728
|\ \ \ \  Merge: f36b6b4 b1e962a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed May 9 01:51:28 2012 -0700
| | | |   
| | | |       Merge pull request #509 from pluskid/kernelmc-store-model
| | | |       
| | | |       store_model_features for KernelMulticlassMachine.
| | | |     
| * | | commit b1e962aec4371c4e22e53fc679cd2ab08fc72efa
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Wed May 9 14:26:04 2012 +0800
| | | | 
| | | |     Use CMap instead of STL.
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |     
| * | | commit f92b94f1f18bf35081261bc4702aa773fcbe124d
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Tue May 8 22:42:00 2012 +0800
| | | | 
| | | |     fix bug in store_model of KernelMulticlassMachine
| | | | 
| | | | M	.gitignore
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |     
| * | | commit d1690e938316e824e2d9935259c0608584f3f316
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Tue May 8 22:05:23 2012 +0800
| | | | 
| | | |     Clean unused includes.
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |     
| * | | commit cce4ae29fa317be13ed3f00f3fea23cc8e35c5ba
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Tue May 8 22:03:46 2012 +0800
| | | | 
| | | |     Move checks to the begining of the function.
| | | | 
| | | | M	src/shogun/machine/KernelMulticlassMachine.cpp
| | | |     
| * | | commit 32e66baa2c34829ad17c6b5219b8f2fc2d0148d4
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Tue May 8 21:52:07 2012 +0800
| | | | 
| | | |     store_model_features for KernelMulticlassMachine.
| | | | 
| | | | A	src/shogun/machine/KernelMulticlassMachine.cpp
| | | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | |     
* | | | commit f36b6b474dd1537ef039cc50f058df2f5962d96b
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed May 9 03:00:57 2012 +0400
| | | | 
| | | |     Fixed sizes of ROC and PRC graphs
| | | | 
| | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | |     
* | | | commit a1cf8adebc8bb9af3a763af60359e9ea85b74f1c
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed May 9 02:50:02 2012 +0400
| | | | 
| | | |     Fixed crashers in PRC/ROC
| | | | 
| | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | M	src/shogun/evaluation/PRCEvaluation.h
| | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | | M	src/shogun/evaluation/ROCEvaluation.h
| | | |     
* | | | commit bee50c205dd409b07f32ee95b91e76086ed316ab
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed May 9 02:13:12 2012 +0400
| | | | 
| | | |     Fix crasher in Isomap
| | | | 
| | | | M	src/shogun/converter/Isomap.cpp
| | | |     
* | | | commit cacd6412c1595daaffacc68da31ea1d9bfb6ddbd
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Wed May 9 00:03:54 2012 +0200
| | | | 
| | | |     Fix classifier_qda example
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_qda.cpp
| | | |     
* | | | commit b379fccee7ca4cd69d6584e8519a803aacce5e2c
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Tue May 8 23:39:51 2012 +0200
| | | | 
| | | |     Override get_name in MKLMulticlass
| | | | 
| | | | M	src/shogun/classifier/mkl/MKLMulticlass.h
| | | |     
* | | | commit a6298589ba1a7eaf8ff30bd17594d05855e6689a
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Tue May 8 23:06:10 2012 +0200
| | | | 
| | | |     Add Multiclass cross-validation example to libshogun
| | | | 
| | | | A	examples/undocumented/libshogun/evaluation_cross_validation_multiclass.cpp
| | | |     
* | | | commit aa8c23fc36fe796a866820ef16ac5cc26ed961a1
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Tue May 8 22:35:32 2012 +0200
| | | | 
| | | |     Fix the number of vectors in the matrix
| | | |     in the multiclasslinearmachine example
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | |     
* | | | commit 0f31345ae92c5370e53f513ac1281eeda68eb34b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 22:21:25 2012 +0200
| | | | 
| | | |     fix double free in example
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | |     
* | | | commit 8d20b9137825a993585ebdf122d3463ee4999e32
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 21:47:46 2012 +0200
| | | | 
| | | |     unref'ing SGReferenced data twice is OK now
| | | |     
| | | |     - make ref() function protected: when assigning SGVector/Matrix objects
| | | |     they will automagically call ref() so an extra ref() is not necessary
| | | |     - ensure that when calling unref() the ptr to the refcount and the data
| | | |     is set to NULL - this is OK since there must be one object that still
| | | |     exists that will then later free the data. this enables calling unref()
| | | |     	twice w/o getting double free errors
| | | | 
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | | | M	src/shogun/lib/SGReferencedData.h
| | | | M	src/shogun/ui/SGInterface.cpp
| | | |     
* | | | commit f271507547836661fa1a2b85bb5b144a744b3a67
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 8 23:40:48 2012 +0400
| | | | 
| | | |     Fixed LLE/HLLE/LTSA crashers
| | | | 
| | | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | |     
* | | | commit c6fff9c906235e9dbe499fa643775d906bd7439f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 21:10:40 2012 +0200
| | | | 
| | | |     fix compilation of libshogun examples
| | | |     
| | | |     use SGMatrix mat(dims, nvec) whereever possible
| | | | 
| | | | M	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| | | | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| | | | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| | | | M	examples/undocumented/libshogun/classifier_conjugateindex.cpp
| | | | M	examples/undocumented/libshogun/classifier_gaussiannaivebayes.cpp
| | | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | M	examples/undocumented/libshogun/classifier_qda.cpp
| | | | M	examples/undocumented/libshogun/converter_stochasticproximityembedding.cpp
| | | | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | | | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | | M	examples/undocumented/libshogun/serialization_basic_tests.cpp
| | | |     
* | | | commit e821c9a4c75764522543a744e1618599a8c594be
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 20:49:21 2012 +0200
| | | | 
| | | |     various sgmatrix compile fixes
| | | | 
| | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | M	src/shogun/features/DenseFeatures.cpp
| | | | M	src/shogun/features/FKFeatures.cpp
| | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | |     
* | | | commit f1f6b10d136324cd536846e882023c6f60e72919
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 20:28:55 2012 +0200
| | | | 
| | | |     add clone() method to SGMatrix
| | | | 
| | | | M	src/shogun/lib/SGMatrix.h
| | | |     
* | | | commit 2a2f68e37d1635f730e24ac83b2fee16d85bca6e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 8 21:52:14 2012 +0400
| | | | 
| | | |     Proper matrix handling in SGInterface - now clones matrices and frees given ones
| | | | 
| | | | M	src/shogun/ui/SGInterface.cpp
| | | |     
* | | | commit 64e9084656c3daf50456ea686f49e04948c1925a
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 8 21:46:11 2012 +0400
| | | | 
| | | |     A bunch of fastfixes
| | | | 
| | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | | | M	src/shogun/features/TOPFeatures.cpp
| | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | M	src/shogun/ui/SGInterface.cpp
| | | |     
* | | | commit 46100fcafd2b54747cdfaa5a35cba81d06c6af49
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 18:47:35 2012 +0200
| | | | 
| | | |     WIP: use SGMatrix inside of SimpleFeatures
| | | | 
| | | | M	src/shogun/features/DenseFeatures.cpp
| | | | M	src/shogun/features/DenseFeatures.h
| | | |     
* | | | commit ea76cdeaf21a30b08e4ace537cfd726251ea121e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 8 19:30:57 2012 +0400
| | | | 
| | | |     Restored gp example
| | | | 
| | | | A	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | |     
* | | | commit 3ba1652a8256021c06bf1c2bf6168f5560b64eff
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue May 8 19:28:06 2012 +0400
| | | | 
| | | |     Simple to Dense renaming
| | | | 
| | | | M	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| | | | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| | | | M	examples/undocumented/libshogun/base_map_parameters.cpp
| | | | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| | | | M	examples/undocumented/libshogun/classifier_conjugateindex.cpp
| | | | M	examples/undocumented/libshogun/classifier_gaussiannaivebayes.cpp
| | | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
| | | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | | M	examples/undocumented/libshogun/classifier_nearest_centroid.cpp
| | | | M	examples/undocumented/libshogun/classifier_newtontest.cpp
| | | | M	examples/undocumented/libshogun/classifier_qda.cpp
| | | | M	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | | M	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| | | | M	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| | | | M	examples/undocumented/libshogun/converter_isomap.cpp
| | | | M	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| | | | M	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| | | | M	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| | | | M	examples/undocumented/libshogun/converter_linearlocaltangentspacealignment.cpp
| | | | M	examples/undocumented/libshogun/converter_localitypreservingprojections.cpp
| | | | M	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| | | | M	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| | | | M	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| | | | M	examples/undocumented/libshogun/converter_neighborhoodpreservingembedding.cpp
| | | | M	examples/undocumented/libshogun/converter_stochasticproximityembedding.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | | | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | | | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_mkl.cpp
| | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | M	examples/undocumented/libshogun/preprocessor_randomfouriergauss.cpp
| | | | D	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | | M	examples/undocumented/libshogun/serialization_basic_tests.cpp
| | | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | | A	examples/undocumented/python_modular/features_dense_byte_modular.py
| | | | A	examples/undocumented/python_modular/features_dense_longint_modular.py
| | | | A	examples/undocumented/python_modular/features_dense_modular.py
| | | | A	examples/undocumented/python_modular/features_dense_real_modular.py
| | | | D	examples/undocumented/python_modular/features_simple_byte_modular.py
| | | | D	examples/undocumented/python_modular/features_simple_longint_modular.py
| | | | D	examples/undocumented/python_modular/features_simple_modular.py
| | | | D	examples/undocumented/python_modular/features_simple_real_modular.py
| | | | M	src/README.developer
| | | | M	src/interfaces/modular/Distance.i
| | | | M	src/interfaces/modular/Distance_includes.i
| | | | M	src/interfaces/modular/Features.i
| | | | M	src/interfaces/modular/Features_includes.i
| | | | M	src/interfaces/modular/IO.i
| | | | M	src/interfaces/modular/IO_includes.i
| | | | M	src/interfaces/modular/Preprocessor.i
| | | | M	src/interfaces/modular/Preprocessor_includes.i
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/classifier/LDA.cpp
| | | | M	src/shogun/classifier/LDA.h
| | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | M	src/shogun/classifier/NearestCentroid.h
| | | | M	src/shogun/classifier/QDA.cpp
| | | | M	src/shogun/classifier/QDA.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | | M	src/shogun/converter/DiffusionMaps.cpp
| | | | M	src/shogun/converter/DiffusionMaps.h
| | | | M	src/shogun/converter/EmbeddingConverter.cpp
| | | | M	src/shogun/converter/EmbeddingConverter.h
| | | | M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| | | | M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| | | | M	src/shogun/converter/Isomap.h
| | | | M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| | | | M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| | | | M	src/shogun/converter/LaplacianEigenmaps.cpp
| | | | M	src/shogun/converter/LaplacianEigenmaps.h
| | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| | | | M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| | | | M	src/shogun/converter/LocalTangentSpaceAlignment.h
| | | | M	src/shogun/converter/LocalityPreservingProjections.cpp
| | | | M	src/shogun/converter/LocalityPreservingProjections.h
| | | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/converter/LocallyLinearEmbedding.h
| | | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | | M	src/shogun/converter/MultidimensionalScaling.h
| | | | M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| | | | M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
| | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.h
| | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | M	src/shogun/distance/BrayCurtisDistance.h
| | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | M	src/shogun/distance/CanberraMetric.h
| | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | M	src/shogun/distance/ChebyshewMetric.h
| | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | M	src/shogun/distance/ChiSquareDistance.h
| | | | M	src/shogun/distance/CosineDistance.cpp
| | | | M	src/shogun/distance/CosineDistance.h
| | | | A	src/shogun/distance/DenseDistance.h
| | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | M	src/shogun/distance/EuclidianDistance.h
| | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | M	src/shogun/distance/GeodesicMetric.h
| | | | M	src/shogun/distance/JensenMetric.cpp
| | | | M	src/shogun/distance/JensenMetric.h
| | | | M	src/shogun/distance/KernelDistance.cpp
| | | | M	src/shogun/distance/MahalanobisDistance.cpp
| | | | M	src/shogun/distance/MahalanobisDistance.h
| | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | M	src/shogun/distance/ManhattanMetric.h
| | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | M	src/shogun/distance/MinkowskiMetric.h
| | | | M	src/shogun/distance/RealDistance.h
| | | | D	src/shogun/distance/SimpleDistance.h
| | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | M	src/shogun/distance/TanimotoDistance.h
| | | | M	src/shogun/features/BinnedDotFeatures.cpp
| | | | M	src/shogun/features/BinnedDotFeatures.h
| | | | A	src/shogun/features/DenseFeatures.cpp
| | | | A	src/shogun/features/DenseFeatures.h
| | | | M	src/shogun/features/FKFeatures.cpp
| | | | M	src/shogun/features/FKFeatures.h
| | | | M	src/shogun/features/FeatureTypes.h
| | | | M	src/shogun/features/Features.cpp
| | | | M	src/shogun/features/Features.h
| | | | M	src/shogun/features/LBPPyrDotFeatures.cpp
| | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | M	src/shogun/features/PolyFeatures.cpp
| | | | M	src/shogun/features/PolyFeatures.h
| | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | M	src/shogun/features/RealFileFeatures.h
| | | | D	src/shogun/features/SimpleFeatures.cpp
| | | | D	src/shogun/features/SimpleFeatures.h
| | | | M	src/shogun/features/SparseFeatures.cpp
| | | | M	src/shogun/features/SparseFeatures.h
| | | | A	src/shogun/features/StreamingDenseFeatures.cpp
| | | | A	src/shogun/features/StreamingDenseFeatures.h
| | | | M	src/shogun/features/StreamingFeatures.h
| | | | D	src/shogun/features/StreamingSimpleFeatures.cpp
| | | | D	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StringFeatures.h
| | | | M	src/shogun/features/TOPFeatures.cpp
| | | | M	src/shogun/features/TOPFeatures.h
| | | | A	src/shogun/io/StreamingFileFromDenseFeatures.h
| | | | M	src/shogun/io/StreamingFileFromFeatures.h
| | | | D	src/shogun/io/StreamingFileFromSimpleFeatures.h
| | | | M	src/shogun/io/StreamingFileFromStringFeatures.h
| | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | M	src/shogun/kernel/ANOVAKernel.h
| | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | M	src/shogun/kernel/AUCKernel.h
| | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | M	src/shogun/kernel/Chi2Kernel.h
| | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | M	src/shogun/kernel/GaussianShiftKernel.h
| | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | M	src/shogun/kernel/GaussianShortRealKernel.h
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.h
| | | | M	src/shogun/kernel/JensenShannonKernel.cpp
| | | | M	src/shogun/kernel/JensenShannonKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/OligoStringKernel.h
| | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | M	src/shogun/kernel/PyramidChi2.h
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | M	src/shogun/kernel/TensorProductPairKernel.h
| | | | M	src/shogun/kernel/WaveletKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | | | M	src/shogun/multiclass/ConjugateIndex.cpp
| | | | M	src/shogun/multiclass/ConjugateIndex.h
| | | | A	src/shogun/preprocessor/DensePreprocessor.cpp
| | | | A	src/shogun/preprocessor/DensePreprocessor.h
| | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| | | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | | M	src/shogun/preprocessor/KernelPCA.h
| | | | M	src/shogun/preprocessor/LogPlusOne.cpp
| | | | M	src/shogun/preprocessor/LogPlusOne.h
| | | | M	src/shogun/preprocessor/NormOne.cpp
| | | | M	src/shogun/preprocessor/NormOne.h
| | | | M	src/shogun/preprocessor/PCA.cpp
| | | | M	src/shogun/preprocessor/PNorm.cpp
| | | | M	src/shogun/preprocessor/PNorm.h
| | | | M	src/shogun/preprocessor/Preprocessor.h
| | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | M	src/shogun/preprocessor/PruneVarSubMean.h
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | | | D	src/shogun/preprocessor/SimplePreprocessor.cpp
| | | | D	src/shogun/preprocessor/SimplePreprocessor.h
| | | | M	src/shogun/preprocessor/SumOne.cpp
| | | | M	src/shogun/preprocessor/SumOne.h
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | | M	src/shogun/regression/LeastAngleRegression.cpp
| | | | M	src/shogun/regression/LeastSquaresRegression.cpp
| | | | M	src/shogun/regression/LeastSquaresRegression.h
| | | | M	src/shogun/regression/LinearRidgeRegression.cpp
| | | | M	src/shogun/regression/LinearRidgeRegression.h
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | M	src/shogun/ui/GUIConverter.cpp
| | | | M	src/shogun/ui/GUIConverter.h
| | | | M	src/shogun/ui/GUIDistance.cpp
| | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | M	src/shogun/ui/GUIFeatures.h
| | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | M	src/shogun/ui/SGInterface.cpp
| | | | M	src/shogun/ui/SGInterface.h
| | | |     
* | | | commit b629d17e09df77fb90187d7f66e68416a0a2aece
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 17:05:34 2012 +0200
| | | | 
| | | |     don't call destroy_matrix() - SGMatrix cleans up itself
| | | | 
| | | | M	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | |     
* | | | commit a103cc4cac3cf75ca8ffd9842778ef97def1d6c0
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 08:24:38 2012 +0200
| | | | 
| | | |     fix crasher in conjugate index
| | | | 
| | | | M	src/shogun/multiclass/ConjugateIndex.cpp
| | | |     
* | | | commit 203d6a7b23dd8fe2bce51a434f43bd45919ea49b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue May 8 08:10:19 2012 +0200
| | | | 
| | | |     minor whitespace changes
| | | | 
| | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | |     
* | | | commit cba9c48db2b22331227c91639fdc87a3b09549e3
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Tue May 8 16:52:31 2012 +0400
| | |   
| | |       Removed vunref
| | |   
| | |   M	src/shogun/features/SimpleFeatures.cpp
| | |   M	src/shogun/lib/DataType.h
| | |    
* | | commit dcfdb8cd16de0612a61fe9835a69af4d85994442
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 7 23:51:03 2012 +0200
| | | 
| | |     introduce ref counted SGMatrix
| | | 
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | M	src/shogun/classifier/QDA.cpp
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/clustering/KMeans.cpp
| | | M	src/shogun/converter/DiffusionMaps.cpp
| | | M	src/shogun/converter/Isomap.cpp
| | | M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| | | M	src/shogun/converter/LaplacianEigenmaps.cpp
| | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | M	src/shogun/distributions/Gaussian.cpp
| | | M	src/shogun/distributions/Gaussian.h
| | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | M	src/shogun/evaluation/ClusteringMutualInformation.cpp
| | | M	src/shogun/features/BinnedDotFeatures.cpp
| | | M	src/shogun/features/DotFeatures.cpp
| | | M	src/shogun/features/SparseFeatures.cpp
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/shogun/lib/SGMatrix.h
| | | M	src/shogun/lib/SGReferencedData.h
| | | M	src/shogun/mathematics/munkres.h
| | | M	src/shogun/multiclass/ConjugateIndex.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| | | M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
| | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | M	src/shogun/preprocessor/PCA.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/LeastAngleRegression.cpp
| | | M	src/shogun/regression/LinearRidgeRegression.cpp
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
* | | commit 9cc33b7059e13c2a5578f2104919a2e034f51488
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Tue May 8 00:00:03 2012 +0200
| | | 
| | |     Fix mem-leak in MulticlassMachine
| | |     apply() had an extra SG_REF on the returned CLables
| | | 
| | | M	src/shogun/machine/MulticlassMachine.cpp
| | |    
* | | commit ff4d3f7d3eb3865441e11b0eb45e6fcb98cc84c3
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
|/|   Date:   Mon May 7 23:13:43 2012 +0200
| |   
| |       Remove unused shogun/lib/Set.h includes
| |   
| |   M	src/shogun/evaluation/CrossValidationSplitting.cpp
| |   M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| |     
* |   commit 06df04e734569740b91fbe99d3d942b5f0646a39
|\ \  Merge: 1408a99 8d71421
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 7 14:05:58 2012 -0700
| | | 
| | |     Merge pull request #506 from karlnapf/master
| | |     
| | |     fixes a memory error in one example
| | |    
| * | commit 8d71421cdf168d3c063963ba6c16904290b1b0ae
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 7 22:03:41 2012 +0100
| | | 
| | |     added debug messages
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | |    
| * | commit e217279d28b034b125bc751e2bb5865f15d42a28
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 7 22:03:21 2012 +0100
| | | 
| | |     code whitespace
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | |    
| * | commit a6fc785b90762b02dd44648f39aff3f9340c1440
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon May 7 22:03:08 2012 +0100
| |   
| |       fix a memory error
| |   
| |   M	examples/undocumented/libshogun/base_map_parameters.cpp
| |   
* | commit 1408a998efdd3649431452d6cd1bfd7da0abb196
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 7 22:28:52 2012 +0200
| | 
| |     retun *this on self assignment
| | 
| | M	src/shogun/lib/SGReferencedData.h
| |   
* | commit accdccf92608f54440da6cee2fadd46d94874620
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 7 22:15:12 2012 +0200
| | 
| |     derive SGVector from SGReferencedData to avoid code duplication
| |     
| |     - later SGMatrix/SGStringList/SGNDArray/SGSparseMatrix will all use
| |     this
| | 
| | M	src/interfaces/modular/Library.i
| | M	src/interfaces/modular/Library_includes.i
| | A	src/shogun/lib/SGReferencedData.h
| | M	src/shogun/lib/SGVector.h
| |     
* |   commit 0f8e30f1bf4e938cbbb369a46bdcd458fbca8204
|\ \  Merge: fa9d193 4bb0290
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 7 13:11:22 2012 -0700
| | | 
| | |     Merge pull request #505 from vigsterkr/master
| | |     
| | |     Add vanilla store_model_features for LinearMulticlassMachine
| | |    
| * | commit 4bb02909cc9d5d3648a3bd244af86b2c83fb033c
|/ /  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Mon May 7 22:07:29 2012 +0200
| |   
| |       Add vanilla store_model_features for LinearMulticlassMachine
| |       So one can actually do a cross-validation with multiclass linear
| |       machines
| |   
| |   M	src/shogun/machine/LinearMulticlassMachine.h
| |     
* |   commit fa9d1938a0a03ac4d0e8690fbae121fe4b85a386
|\ \  Merge: c2d6fbf 16b68ec
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Mon May 7 12:22:42 2012 -0700
| |   
| |       Merge pull request #502 from pluskid/ecoc-random-sparse
| |       
| |       Correct the equations in comment.
| |   
| * commit 16b68ec0550420ef231b3e9763e5b90f91b5a98c
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon May 7 23:12:12 2012 +0800
| | 
| |     Correct the equations in comment.
| | 
| | M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
| |   
* | commit c2d6fbff4086a7a94ab4990afd23fadfd266ffc1
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon May 7 22:39:54 2012 +0400
| | 
| |     Removed wrong include
| | 
| | M	src/shogun/features/Labels.cpp
| |     
* |   commit abf3fe5ef29501736dec6a125516b2e7b0298cec
|\ \  Merge: 8e62f3c 6ba4e35
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon May 7 11:31:01 2012 -0700
| | | 
| | |     Merge pull request #504 from gsomix/CSet
| | |     
| | |     СMap for mallocs tracing
| | |    
| * | commit 6ba4e35e589126be97716b687e88a52829d9d716
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Mon May 7 22:23:44 2012 +0400
| | | 
| | |     fixes for tracing mallocs
| | | 
| | | M	src/shogun/lib/Map.h
| | | M	src/shogun/lib/memory.cpp
| | |    
| * | commit 1b3b119049e1295ef8f0dcde9bb951dee4004d0a
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Mon May 7 21:16:29 2012 +0400
| | | 
| | |     CSet<MemoryBlock> to CMap<void*, MemoryBlock>
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/init.cpp
| | | M	src/shogun/lib/memory.cpp
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
| * | commit f9cd2d9f920b75d641f43e7ff3bb8d9901fa8068
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Mon May 7 21:15:14 2012 +0400
| |   
| |       deleted CSet, added CMap
| |   
| |   M	examples/undocumented/libshogun/Makefile
| |   D	examples/undocumented/libshogun/library_hashset.cpp
| |   A	src/shogun/lib/Map.h
| |   D	src/shogun/lib/Set.h
| |     
* |   commit 8e62f3c80335e8dde78cf7318c04bdde06dc802e
|\ \  Merge: 43a8610 32e6c93
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 7 08:26:46 2012 -0700
| | | 
| | |     Merge pull request #503 from karlnapf/master
| | |     
| | |     get rid of SGVector<void/char>
| | |    
| * | commit 32e6c934f288a60f877ff6b8d50e9f157f5e363d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon May 7 16:25:02 2012 +0100
| | | 
| | |     serialization is now forbidden
| | | 
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | |    
| * | commit d2ec93cd60ae2422b9ad249bd4acc631189b297f
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Sat May 5 19:38:30 2012 +0100
| |   
| |       m_values variable is now split to array/length instead of SGVector due to messy
| |       problems. Parameter registration removed
| |   
| |   M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   M	src/shogun/modelselection/ModelSelectionParameters.h
| |     
* |   commit 43a8610a1b9af37e1c5ceee5e7ce490f2ef659a9
|\ \  Merge: 8d98d45 136f4e3
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Mon May 7 18:14:42 2012 +0400
| |   
| |       Merge branch 'ecoc-random-sparse' of https://github.com/pluskid/shogun
| |   
| * commit 136f4e3f377d88743c0b9fae172d207c2fc457db
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon May 7 22:07:25 2012 +0800
| | 
| |     get_default_code_length no longer needed to be virtual
| | 
| | M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
| |   
| * commit 263905114acc670dde415787db2e4389f2e04109
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon May 7 21:58:56 2012 +0800
| | 
| |     A new method for ECOC Random Sparse to avoid invalid code
| | 
| | A	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.cpp
| | M	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.h
| | M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| | M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
| |   
* | commit 8d98d45e9c05a6ca5275128d27d937a1a016aae7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon May 7 15:54:49 2012 +0400
| | 
| |     Fixed multiclass linearmachine example
| | 
| | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| |   
* | commit 81f9fada433064d8c4654725859b6c0d423ab076
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon May 7 15:50:20 2012 +0400
|   
|       Checks for multiclass svms
|   
|   M	src/shogun/multiclass/MulticlassLibLinear.cpp
|   M	src/shogun/multiclass/MulticlassOCAS.cpp
|  
* commit 401ab302d40e5330b87ff88784706662e8237efd
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 7 15:49:38 2012 +0400
| 
|     Fixed wrong method call
| 
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|  
* commit cdb3740de3abb5f75d9cd69d07fe8d084f2fe00f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 7 13:45:53 2012 +0200
| 
|     resize SGVector to match total size
| 
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|  
* commit 0bcbd48e061661b36f40dece53ab7c7f2a0d688b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 7 11:38:57 2012 +0400
| 
|     Fixed memleak in mds
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
|  
* commit dae4aa4086a7ccd746a3424c4c0abbc733ae6a75
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 7 11:17:00 2012 +0400
| 
|     Fixed memleak in SPE
| 
| M	src/shogun/converter/StochasticProximityEmbedding.cpp
|  
* commit b2b8cb1109285f5bdc54c68e13ecfebfb2109a70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 7 08:23:54 2012 +0200
| 
|     add more heavy valgrind check options
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit 76d0391f10eb6e3aefdd17be6ed308d6ab78942d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 7 08:21:39 2012 +0200
| 
|     fix memory leak in example
| 
| M	examples/undocumented/libshogun/library_indirect_object.cpp
|  
* commit 122bade4c3d27dc28721d92c192eb0f4b09fd736
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 23:05:06 2012 +0200
| 
|     no longer copy subset index
| 
| M	src/shogun/features/Subset.cpp
| M	src/shogun/features/Subset.h
|  
* commit 30c680f43d4ba00d30dc94f74f66fb205113eb64
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon May 7 00:57:12 2012 +0400
| 
|     Fixed crashers in converters
| 
| M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
|  
* commit 9bec802cb81db050e84748654baa4ec3ecb578e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 22:47:09 2012 +0200
| 
|     don't use Objects in structs allocated via SG_MALLOC
|     
|     - convert SGVector to ptr*, len
| 
| M	src/shogun/machine/KernelMachine.cpp
|  
* commit bc84543db938cb14131bcf7dab199a4a36dd6cf9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 20:14:55 2012 +0200
| 
|     revert change - previous (simpler) solution was correct
| 
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|  
* commit 9313a140889c2b15f2edef057e45c974ff633c81
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 19:46:20 2012 +0200
| 
|     fix crasher in mc ocas
| 
| M	src/shogun/multiclass/MulticlassOCAS.cpp
|  
* commit 74aa24d55c44d34446f9a831c07e4f8a24662fd2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 19:46:07 2012 +0200
| 
|     remove forgotten debug code
| 
| M	src/shogun/features/Labels.cpp
|  
* commit e879dee226bffb1c8cb7f6d6778c21d5f2609a71
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun May 6 22:07:57 2012 +0800
| 
|     Increase default maxiter of random sparse coding to avoid failure.
| 
| M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
|  
* commit 2e24f625ff8e7e2f7a997488b36e2df643877af2
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun May 6 22:07:40 2012 +0800
| 
|     Fix memory error related to new SGVector API.
| 
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|  
* commit eccb18c52592ec6c6ee4f8456e768d86df95eda1
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun May 6 21:30:28 2012 +0800
| 
|     Fix ECOC Random coding bug.
| 
| M	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| M	src/shogun/lib/SGMatrix.h
| M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
|  
* commit f317f393fb33df8e300f481d5dc0a5eabc1dfb84
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun May 6 20:25:39 2012 +0800
| 
|     Fix ECOC memory error with new SGVector.
| 
| M	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| A	examples/undocumented/libshogun/classifier_multiclass_ecoc_random.cpp
| M	src/shogun/multiclass/ecoc/ECOCOVOEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCOVREncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
|  
* commit ebabcc347752e44d00d85756201a5cb50e7794e0
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun May 6 19:58:46 2012 +0800
| 
|     Fix typeerror in SWIG python modular
| 
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| M	src/shogun/machine/LinearMulticlassMachine.h
| M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
|  
* commit 55485880ec2169218fc59c7ca75fff9304a09944
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 6 00:12:15 2012 +0200
| 
|     free old ref before copying
| 
| M	src/shogun/lib/SGVector.h
|  
* commit ebbb162d73a31d1ee935a4e48be3e8ae2ad12aef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 23:57:56 2012 +0200
| 
|     fix typo in comment
| 
| M	src/shogun/base/Parameter.cpp
|  
* commit 16a44e8d06b8fb3e65a610af0b97de87dcf9e9ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 23:57:19 2012 +0200
| 
|     fix uninited memory reads in gcarray
|     
|     SG_MALLOC -> SG_CALLOC does the job
| 
| M	src/shogun/lib/GCArray.h
|  
* commit b289435fe6454e24c5e8289b129828d971279657
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 23:34:44 2012 +0200
| 
|     fix double free in da svm
| 
| M	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
|  
* commit 7eb94e3329727cff9de79cbeccbe149a6b4373e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 23:21:18 2012 +0200
| 
|     re-introduce load/save to labels
|     
|     it does make sense to have these functions to be able to load/save
|     labels in standard file formats
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/ui/GUILabels.cpp
| M	src/shogun/ui/GUILabels.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 7c4798d20c587ea36e861f6627f03e5d5bd2cdb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 23:11:57 2012 +0200
| 
|     fix double free errors in mkl / combined kernel / wds kernel
| 
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit b273a5be5568da2a4cfc96e5aecf1b3915d2aa5b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 22:57:35 2012 +0200
| 
|     fix double free in auc kernel
| 
| M	src/shogun/kernel/AUCKernel.cpp
|  
* commit 7855c2f808c073f3190c7c863a61bcae662659ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 22:08:10 2012 +0200
| 
|     fix double free in linearhmm
| 
| M	src/shogun/distributions/LinearHMM.cpp
|  
* commit 40e57b918ab232a3d6093f4f3d07c7581d025c8b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 22:04:23 2012 +0200
| 
|     move enum to upper class level
| 
| M	src/shogun/regression/KernelRidgeRegression.h
|  
* commit 5bfc18381d1fef72c318f374f31b872fc52e5aac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 22:03:55 2012 +0200
| 
|     fix crasher due to double free in hierarchical
| 
| M	src/shogun/clustering/Hierarchical.cpp
|    
*   commit 7af15304ff8fa1ef484823ff6042065882f6a9fb
|\  Merge: 8471487 f4b71aa
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat May 5 12:22:21 2012 -0700
| | 
| |     Merge pull request #498 from gsomix/CSet
| |     
| |     Fixes in CSet
| |   
| * commit f4b71aae1a00427fc897a28ecf8f8466e4ba9ae3
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sat May 5 23:18:55 2012 +0400
| | 
| |     default constructor is not needed
| | 
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| |   
| * commit 96e0065ae7678ffcae5b22294ca825c2d31da15b
|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|   Date:   Sat May 5 22:56:43 2012 +0400
|   
|       fixes for using non-shogun mallocs/callocs
|   
|   M	examples/undocumented/libshogun/library_hashset.cpp
|   M	src/shogun/base/init.cpp
|   M	src/shogun/lib/Set.h
|   M	src/shogun/lib/memory.cpp
|   M	src/shogun/lib/memory.h
|  
* commit 8471487e80b85398d5f92c063e1048ea00576818
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 20:37:16 2012 +0200
| 
|     polish get_labels_copy() and drop load/save from CLabels
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/ui/GUILabels.cpp
| M	src/shogun/ui/GUILabels.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit adc145565d67c4f034ba151b7fce1dddb0e638bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 20:18:53 2012 +0200
| 
|     fix mkl multiclass sgvector bug
| 
| M	src/shogun/classifier/mkl/MKLMulticlass.cpp
|  
* commit 9eeb5cfbcbab537b1c4cf865ed90303f9e5aa25f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 20:18:36 2012 +0200
| 
|     remove unneeded initialization in KernelMachine
| 
| M	src/shogun/machine/KernelMachine.cpp
|  
* commit 50a161e0a73d25a2565849730b6049e70191bf48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 19:47:45 2012 +0200
| 
|     continued sgvector transition
|     
|     - convert linear machines to use SGVector w instead of double ptr
|     - remove various unneedef SG_FREEs
| 
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/LDA.cpp
| M	src/shogun/classifier/Perceptron.cpp
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/SGDQN.cpp
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/classifier/svm/SVMOcas.cpp
| M	src/shogun/classifier/svm/SVMSGD.cpp
| M	src/shogun/classifier/svm/SubGradientSVM.cpp
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/lib/SGVector.h
| M	src/shogun/machine/LinearMachine.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.h
| M	src/shogun/ui/GUIClassifier.cpp
|  
* commit e5500e52a04ae359d402c5730bce8973b3b9643e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 5 19:47:21 2012 +0200
| 
|     slightly simplify example
| 
| M	examples/undocumented/libshogun/statistics.cpp
|    
*   commit 36f45e4742e9ecb4899bbd46c75fc80d550378de
|\  Merge: 0662061 b0d9177
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat May 5 09:09:58 2012 -0700
| | 
| |     Merge pull request #494 from karlnapf/master
| |     
| |     Suggestion for a statistical testing framework
| |   
| * commit b0d9177a56e63e7aeb365251950c6b3428324c1b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat May 5 17:07:02 2012 +0100
| | 
| |     new SGVector system changes
| | 
| | M	src/shogun/statistics/LinearTimeMMD.cpp
| |   
| * commit 613d430a1813a77cd00b05963ffc2be70235086a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu May 3 20:04:06 2012 +0100
| | 
| |     initial sketch for new statistical testing framework
| | 
| | A	src/shogun/statistics/LinearTimeMMD.cpp
| | A	src/shogun/statistics/LinearTimeMMD.h
| | A	src/shogun/statistics/StatisticalTest.cpp
| | A	src/shogun/statistics/StatisticalTest.h
| | A	src/shogun/statistics/TestStatistic.h
| | A	src/shogun/statistics/TwoSampleTestStatistic.cpp
| | A	src/shogun/statistics/TwoSampleTestStatistic.h
| |   
| * commit 64ba7b735a26b9696925867c24ba50e7081656d7
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu May 3 20:03:27 2012 +0100
|   
|       added copyright and a permute_vector method
|   
|   M	src/shogun/mathematics/Math.h
|  
* commit 06620610b9c9c0a17cd477ac79762683fa68e2e7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat May 5 14:02:15 2012 +0400
| 
|     Workaround for kernel machine segfault
| 
| M	src/shogun/machine/KernelMachine.cpp
|  
* commit 6fdff039e4c934c68bd03fd41e93eef1d919ab70
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat May 5 00:20:40 2012 +0400
| 
|     Hopefully fixes static serialization
| 
| M	src/shogun/ui/GUIClassifier.cpp
|    
*   commit 4d88496a17505fe5dc6163cf946fffab68d5953a
|\  Merge: b4893b0 69de133
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri May 4 23:56:57 2012 +0400
| | 
| |     Merge branch 'save_load_Machines' of git://github.com/gsomix/shogun
| |   
| * commit 69de1334c74540a124c14432cfc0bb2bc9020148
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri May 4 01:21:33 2012 +0400
| | 
| |     removed load/save methods
| | 
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/Machine.cpp
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/machine/OnlineLinearMachine.cpp
| | M	src/shogun/machine/OnlineLinearMachine.h
| |     
* |   commit b4893b08d8f82556c3a7894ffb8f2b08531869e4
|\ \  Merge: 8ba941f 6abfec2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri May 4 23:55:23 2012 +0400
| | | 
| | |     Merge branch 'multiclass-ecoc' of git://github.com/pluskid/shogun
| | |    
| * | commit 6abfec2965066eecdd40598fb4e4c86afbeb84a6
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Fri May 4 00:02:53 2012 +0800
| | | 
| | |     Added ECOC Random modular interface and a simple python example.
| | | 
| | | A	examples/undocumented/python_modular/classifier_multiclass_ecoc_random.py
| | | M	src/interfaces/modular/Classifier_includes.i
| | |    
| * | commit 0268db597abbab603947afd6307767a958206e8c
| | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | Date:   Thu May 3 23:35:18 2012 +0800
| | | 
| | |     Added python_modular interface for ECOC Random Coding.
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | |    
* | | commit 8ba941f01c60487838ea34e4b97e88a18727ddab
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri May 4 17:45:55 2012 +0200
| | | 
| | |     fix assignment operator of SGVector and its clone method
| | | 
| | | M	src/shogun/lib/SGVector.h
| | |    
* | | commit 44494d5a279c54c0a8c820b8f9df4f57697b1512
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Fri May 4 08:34:31 2012 +0200
| |   
| |       fix a few crashers related to sgvector transition
| |   
| |   M	src/shogun/evaluation/CrossValidation.cpp
| |   M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   M	src/shogun/modelselection/ModelSelectionParameters.h
| |     
* |   commit b74508fb48cbeab0d7a7ded0589a33d1c475c3e0
|\ \  Merge: fe346d6 21596cd
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu May 3 14:07:18 2012 -0700
| | | 
| | |     Merge pull request #495 from gsomix/CSet
| | |     
| | |     CHashSet -> CSet
| | |    
| * | commit 21596cdf1860141fca3f2e80c0cc46b1c3a2d9d4
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri May 4 00:34:49 2012 +0400
| | | 
| | |     fixes in codestyle
| | | 
| | | M	src/shogun/lib/Set.h
| | |    
| * | commit 1f76059067c30e4f3e4fa06c2a645cf907e8441c
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu May 3 23:51:36 2012 +0400
| | | 
| | |     minor fixes
| | | 
| | | M	examples/undocumented/libshogun/library_hashset.cpp
| | |    
| * | commit a63b909bfbe8f9521d7e464011eb981efe37de88
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu May 3 23:49:03 2012 +0400
| | | 
| | |     fixes for transition
| | | 
| | | M	examples/undocumented/libshogun/library_hashset.cpp
| | | M	src/shogun/base/init.cpp
| | |    
| * | commit fd00e14c0d375cb05e87e5f3261c332e0b77c9fd
|/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Thu May 3 23:47:27 2012 +0400
| |   
| |       CHashSet -> CSet
| |   
| |   D	src/shogun/lib/HashSet.cpp
| |   D	src/shogun/lib/HashSet.h
| |   M	src/shogun/lib/Set.h
| |   
* | commit fe346d6d8270e878142ad7d6e41e47624c8fa76a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 3 22:01:50 2012 +0200
| | 
| |     overload assignment operator and add GC debug output for sgvector
| | 
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/Labels.h
| | M	src/shogun/lib/SGVector.h
| | M	src/shogun/machine/KernelMachine.cpp
| |   
* | commit dcd8633efd2728b63816fa8b285b651a26c04047
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu May 3 20:16:18 2012 +0200
|   
|       remove SGVector& -> use SGVector instead
|   
|   M	examples/undocumented/libshogun/classifier_libsvm.cpp
|   M	src/shogun/clustering/GMM.cpp
|   M	src/shogun/clustering/GMM.h
|   M	src/shogun/distributions/Gaussian.cpp
|   M	src/shogun/distributions/Gaussian.h
|   M	src/shogun/distributions/Histogram.cpp
|   M	src/shogun/distributions/Histogram.h
|   M	src/shogun/distributions/LinearHMM.cpp
|   M	src/shogun/distributions/LinearHMM.h
|   M	src/shogun/evaluation/ClusteringEvaluation.cpp
|   M	src/shogun/evaluation/ClusteringEvaluation.h
|   M	src/shogun/features/CombinedDotFeatures.cpp
|   M	src/shogun/features/CombinedDotFeatures.h
|   M	src/shogun/features/DotFeatures.cpp
|   M	src/shogun/features/DotFeatures.h
|   M	src/shogun/features/Features.cpp
|   M	src/shogun/features/Features.h
|   M	src/shogun/features/Labels.cpp
|   M	src/shogun/features/Labels.h
|   M	src/shogun/features/SimpleFeatures.cpp
|   M	src/shogun/features/SimpleFeatures.h
|   M	src/shogun/features/SparseFeatures.cpp
|   M	src/shogun/features/SparseFeatures.h
|   M	src/shogun/features/StreamingSimpleFeatures.cpp
|   M	src/shogun/features/StreamingSimpleFeatures.h
|   M	src/shogun/features/StringFeatures.cpp
|   M	src/shogun/features/StringFeatures.h
|   M	src/shogun/features/Subset.cpp
|   M	src/shogun/features/Subset.h
|   M	src/shogun/features/WDFeatures.cpp
|   M	src/shogun/features/WDFeatures.h
|   M	src/shogun/kernel/CombinedKernel.cpp
|   M	src/shogun/kernel/CombinedKernel.h
|   M	src/shogun/kernel/CustomKernel.h
|   M	src/shogun/kernel/DirectorKernel.h
|   M	src/shogun/kernel/Kernel.cpp
|   M	src/shogun/kernel/Kernel.h
|   M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
|   M	src/shogun/kernel/WeightedCommWordStringKernel.h
|   M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
|   M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
|   M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
|   M	src/shogun/kernel/WeightedDegreeStringKernel.h
|   M	src/shogun/lib/SGVector.h
|   M	src/shogun/machine/KernelMachine.cpp
|   M	src/shogun/machine/KernelMachine.h
|   M	src/shogun/machine/KernelMulticlassMachine.h
|   M	src/shogun/machine/LinearMachine.h
|   M	src/shogun/machine/LinearMulticlassMachine.h
|   M	src/shogun/machine/Machine.h
|   M	src/shogun/machine/MulticlassMachine.h
|   M	src/shogun/mathematics/Statistics.cpp
|   M	src/shogun/mathematics/Statistics.h
|   M	src/shogun/modelselection/ModelSelectionParameters.cpp
|   M	src/shogun/modelselection/ModelSelectionParameters.h
|   M	src/shogun/multiclass/ConjugateIndex.cpp
|   M	src/shogun/multiclass/ConjugateIndex.h
|   M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
|   M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
|   M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
|   M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
|   M	src/shogun/multiclass/MulticlassSVM.h
|   M	src/shogun/multiclass/MulticlassStrategy.h
|   M	src/shogun/multiclass/RejectionStrategy.h
|   M	src/shogun/multiclass/ecoc/ECOCDecoder.h
|   M	src/shogun/multiclass/ecoc/ECOCHDDecoder.h
|   M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
|   M	src/shogun/multiclass/ecoc/ECOCStrategy.h
|   M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|   M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
|   M	src/shogun/preprocessor/HomogeneousKernelMap.h
|   M	src/shogun/preprocessor/KernelPCA.cpp
|   M	src/shogun/preprocessor/KernelPCA.h
|   M	src/shogun/preprocessor/LogPlusOne.cpp
|   M	src/shogun/preprocessor/LogPlusOne.h
|   M	src/shogun/preprocessor/NormOne.cpp
|   M	src/shogun/preprocessor/NormOne.h
|   M	src/shogun/preprocessor/PCA.cpp
|   M	src/shogun/preprocessor/PCA.h
|   M	src/shogun/preprocessor/PNorm.cpp
|   M	src/shogun/preprocessor/PNorm.h
|   M	src/shogun/preprocessor/PruneVarSubMean.cpp
|   M	src/shogun/preprocessor/PruneVarSubMean.h
|   M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
|   M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
|   M	src/shogun/preprocessor/SimplePreprocessor.h
|   M	src/shogun/preprocessor/SumOne.cpp
|   M	src/shogun/preprocessor/SumOne.h
|  
* commit 10684a1f68305e30d30e073c5d715f65daf9ad09
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 3 17:25:27 2012 +0200
| 
|     Adjust static examples to not do SGVector refcounting.
| 
| M	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| M	examples/undocumented/libshogun/base_map_parameters.cpp
| M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| M	examples/undocumented/libshogun/features_subset_labels.cpp
| M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| M	examples/undocumented/libshogun/features_subset_stack.cpp
| M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| M	examples/undocumented/libshogun/serialization_basic_tests.cpp
| M	examples/undocumented/libshogun/splitting_standard_crossvalidation.cpp
| M	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| M	examples/undocumented/libshogun/statistics.cpp
|  
* commit 522dbdaab95b3617070f7fde5f13bfa0ed6582f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 3 17:09:36 2012 +0200
| 
|     move next release date to ~september'12
| 
| M	src/NEWS
|  
* commit f9674d9ff399ad1e491c57521de9087051e6b0bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 3 14:39:13 2012 +0200
| 
|     remove most of the destroy/free_vector calls
|     
|     that should fix compilation
| 
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/GaussianNaiveBayes.cpp
| M	src/shogun/classifier/LDA.cpp
| M	src/shogun/classifier/Perceptron.cpp
| M	src/shogun/classifier/QDA.cpp
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| M	src/shogun/classifier/svm/NewtonSVM.cpp
| M	src/shogun/classifier/svm/SGDQN.cpp
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVM.h
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/classifier/svm/SVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/clustering/GMM.cpp
| M	src/shogun/clustering/GMM.h
| M	src/shogun/clustering/KMeans.cpp
| M	src/shogun/distance/MahalanobisDistance.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/Subset.cpp
| M	src/shogun/features/SubsetStack.cpp
| M	src/shogun/kernel/AUCKernel.cpp
|  
* commit 87e77b8e8b5142abb962e5c1a41f50be5aa590a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 3 08:06:50 2012 +0200
| 
|     remove destroy / free vectro functions
| 
| M	src/shogun/classifier/svm/GPBTSVM.cpp
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/StochasticProximityEmbedding.cpp
| M	src/shogun/distributions/Gaussian.cpp
| M	src/shogun/distributions/Gaussian.h
| M	src/shogun/evaluation/ClusteringEvaluation.cpp
| M	src/shogun/evaluation/ClusteringMutualInformation.cpp
| M	src/shogun/evaluation/CrossValidation.cpp
| M	src/shogun/evaluation/CrossValidationSplitting.cpp
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| M	src/shogun/lib/SGVector.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/multiclass/ConjugateIndex.cpp
| M	src/shogun/multiclass/KNN.cpp
| M	src/shogun/multiclass/MulticlassLibSVM.cpp
| M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/regression/GaussianProcessRegression.cpp
| M	src/shogun/regression/KernelRidgeRegression.cpp
| M	src/shogun/regression/LeastAngleRegression.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 9cfc64c241208fbbd16872c046c068811a3694dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 3 00:07:39 2012 +0200
| 
|     split up SG* datatypes into separate files
|     
|     - fix includes accordingly
|     - drop direct access to do_free component of sgvector
|     - add some ref counting to sgvector
| 
| M	src/interfaces/modular/Library.i
| M	src/interfaces/modular/Library_includes.i
| M	src/interfaces/python_modular/swig_typemaps.i
| M	src/shogun/base/SGObject.h
| M	src/shogun/classifier/QDA.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparseFeatures.h
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/io/StreamingFile.h
| M	src/shogun/lib/DataType.cpp
| M	src/shogun/lib/DataType.h
| A	src/shogun/lib/SGCachedVector.h
| A	src/shogun/lib/SGMatrix.h
| A	src/shogun/lib/SGNDArray.h
| A	src/shogun/lib/SGSparseMatrix.h
| A	src/shogun/lib/SGSparseVector.h
| A	src/shogun/lib/SGString.h
| A	src/shogun/lib/SGStringList.h
| A	src/shogun/lib/SGVector.h
| M	src/shogun/mathematics/Math.h
| M	src/shogun/mathematics/munkres.h
| M	src/shogun/multiclass/ecoc/ECOCDecoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCDecoder.h
| M	src/shogun/regression/LeastAngleRegression.h
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit f24ba7b9829d20fb8ef08b6c51b663c36d669558
| Author: Evgeniy Andreev <gsomix@gmail.com>
| Date:   Mon Apr 30 19:24:37 2012 +0400
| 
|     minor fixes 2
| 
| M	src/shogun/lib/DataType.h
|  
* commit 901dd39f350a7987eed96279cc9442abb5018975
| Author: Evgeniy Andreev <gsomix@gmail.com>
| Date:   Mon Apr 30 19:14:59 2012 +0400
| 
|     added no_ref_count arg, temporary changes
| 
| M	src/shogun/lib/DataType.h
|  
* commit 5381d2267a8dc0223db89b0883a75108b385bc7e
| Author: Evgeniy Andreev <gsomix@gmail.com>
| Date:   Mon Apr 30 00:34:20 2012 +0400
| 
|     minor fixes
| 
| M	src/shogun/lib/DataType.h
|  
* commit 78c679a563c353c37b4f4577d323d1adc72142b5
| Author: Evgeniy Andreev <gsomix@gmail.com>
| Date:   Mon Apr 30 00:24:54 2012 +0400
| 
|     added reference counting for SGVector (further SGIVector)
| 
| M	src/shogun/lib/DataType.h
|    
*   commit 7d679b71841643733613672de5a9d8e811b20637
|\  Merge: 63597a0 bb7101b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 2 08:05:28 2012 -0700
| | 
| |     Merge pull request #492 from pluskid/rename-LARS
| |     
| |     Rename LARS to LeastAngleRegression
| |   
| * commit bb7101b8cd8b1704b7ed6d87dec88158c74249a4
|/  Author: Chiyuan Zhang <pluskid@gmail.com>
|   Date:   Wed May 2 18:44:41 2012 +0800
|   
|       Rename LARS to LeastAngleRegression
|   
|   M	examples/undocumented/python_modular/graphical/regression_lars.py
|   M	src/interfaces/modular/Regression.i
|   M	src/interfaces/modular/Regression_includes.i
|   D	src/shogun/regression/LARS.cpp
|   D	src/shogun/regression/LARS.h
|   A	src/shogun/regression/LeastAngleRegression.cpp
|   A	src/shogun/regression/LeastAngleRegression.h
|  
* commit 63597a0d66843fbee968d068e4756b75c93ebe2e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed May 2 02:49:49 2012 +0400
| 
|     Revert "Removed unnecessary methods from LARS"
|     
|     This reverts commit ca57115f7cad3b447fe4125299039ef17291ffb2.
| 
| M	src/shogun/regression/LARS.cpp
| M	src/shogun/regression/LARS.h
|  
* commit 6cfcbadbc7fdbb2e770c0659bc7cdaa661c0f4b3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed May 2 02:49:35 2012 +0400
| 
|     Proper retraining of multiclass
| 
| M	src/shogun/lib/DynamicObjectArray.h
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
| M	src/shogun/multiclass/MulticlassOCAS.cpp
| M	src/shogun/multiclass/MulticlassSVM.cpp
|  
* commit 0adae945a4b9db09aa2f82ed7fffe4911b19b89c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue May 1 05:02:14 2012 +0400
| 
|     Removed unnecessary methods from LARS
| 
| M	src/shogun/regression/LARS.cpp
| M	src/shogun/regression/LARS.h
|  
* commit 0276e266185cecdc0a39e34aa46487197d816989
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Apr 30 22:17:12 2012 +0400
| 
|     Significant performance improvement for multiclass liblinear
| 
| M	src/shogun/lib/external/shogun_liblinear.cpp
|  
* commit d16b85292f5c245bdf4547fe4d108bf26861883d
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Mon Apr 30 22:51:45 2012 +0800
| 
|     ECOC Random Dense/Sparse Coding.
| 
| M	src/shogun/multiclass/ecoc/ECOCEncoder.h
| M	src/shogun/multiclass/ecoc/ECOCHDDecoder.h
| A	src/shogun/multiclass/ecoc/ECOCOVOEncoder.cpp
| A	src/shogun/multiclass/ecoc/ECOCOVOEncoder.h
| M	src/shogun/multiclass/ecoc/ECOCOVREncoder.h
| A	src/shogun/multiclass/ecoc/ECOCRandomDenseEncoder.h
| A	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.cpp
| A	src/shogun/multiclass/ecoc/ECOCRandomSparseEncoder.h
| M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
| A	src/shogun/multiclass/ecoc/ECOCUtil.h
|  
* commit dc12684f0f2e509ef6fa4617f0be1f55f0d32fa4
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 21:17:20 2012 +0800
| 
|     a better fix for the SWIG problem.
| 
| M	src/interfaces/modular/Classifier.i
| M	src/shogun/multiclass/ecoc/ECOCStrategy.h
|    
*   commit 6caa7a7d768b53cffd45002fdd49543069d3db11
|\  Merge: c1d1cb9 f709e0d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Apr 30 12:38:36 2012 +0400
| | 
| |     Merge branch 'ct-warningfix' of git://github.com/iglesias/shogun
| |   
| * commit f709e0dad6251cd8749ed24a6649287b0503337f
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sun Apr 29 22:07:02 2012 +0200
| | 
| |     *  documentation JLCoverTree warnings fix
| | 
| | M	src/shogun/lib/JLCoverTree.h
| | M	src/shogun/lib/JLCoverTreePoint.h
| | M	src/shogun/multiclass/KNN.h
| |   
* | commit c1d1cb93c709c731fcd76a837352c14fed6e00c9
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sun Apr 29 23:14:19 2012 +0400
|   
|       Fixed wrong include
|   
|   M	src/shogun/ui/SGInterface.cpp
|  
* commit 35d941e5e9324df6d3deab6987ee872808993345
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 23:05:57 2012 +0400
| 
|     Fixed wrong include
| 
| M	src/shogun/classifier/svm/SVMLight.cpp
|  
* commit 1845ae3048d4e36cdcdaf0e00405ead6dd5adf49
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 23:03:35 2012 +0400
| 
|     Fixed wrong include
| 
| M	src/shogun/classifier/svm/QPBSVMLib.cpp
|  
* commit da7b85b4728f9c1a66ba3acd006604613241d825
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 18:03:33 2012 +0400
| 
|     Fix for set subfeatures weights
| 
| M	src/shogun/features/CombinedDotFeatures.cpp
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit 799784aef682ef13bdf2fd97b63fb66490355391
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 20:50:38 2012 +0800
| 
|     Fix SWIG error of not recognizing class hierarchy.
| 
| M	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| M	src/shogun/multiclass/ecoc/ECOCStrategy.h
|  
* commit 126453f585c53624d0de69532f238150a0fe8a00
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 20:28:47 2012 +0800
| 
|     Added ECOC Examples.
| 
| A	examples/undocumented/libshogun/classifier_multiclass_ecoc.cpp
| A	examples/undocumented/python_modular/classifier_multiclass_ecoc_ovr.py
| M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
|  
* commit 7449afbd3855a1fbb285297ebd8bf41e8e054013
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 20:13:57 2012 +0800
| 
|     Decide label from ECOC Decoder.
| 
| M	src/shogun/multiclass/ecoc/ECOCDecoder.cpp
| M	src/shogun/multiclass/ecoc/ECOCDecoder.h
| M	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
| M	src/shogun/multiclass/ecoc/ECOCStrategy.h
|  
* commit 09e23997ee8752bc92e0fa30b14afcf59f8b9bc2
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 19:23:38 2012 +0800
| 
|     Added ECOC for python modular interfaces.
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
|  
* commit e044480fabec298b30b9a33ac0449c70dd53d778
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sun Apr 29 18:53:51 2012 +0800
| 
|     Added hamming distance ECOC Decoder.
| 
| M	src/shogun/mathematics/Math.h
| A	src/shogun/multiclass/ecoc/ECOCDecoder.cpp
| A	src/shogun/multiclass/ecoc/ECOCDecoder.h
| M	src/shogun/multiclass/ecoc/ECOCEncoder.h
| A	src/shogun/multiclass/ecoc/ECOCHDDecoder.h
| M	src/shogun/multiclass/ecoc/ECOCOVREncoder.h
|  
* commit 290fcd83249bb376718d1d07f538d53d7b3d12eb
| Author: Chiyuan Zhang <pluskid@gmail.com>
| Date:   Sat Apr 28 22:58:24 2012 +0800
| 
|     Added ECOC Encoder.
| 
| M	src/shogun/multiclass/MulticlassStrategy.cpp
| A	src/shogun/multiclass/ecoc/ECOCEncoder.h
| A	src/shogun/multiclass/ecoc/ECOCOVREncoder.cpp
| A	src/shogun/multiclass/ecoc/ECOCOVREncoder.h
| A	src/shogun/multiclass/ecoc/ECOCStrategy.cpp
| A	src/shogun/multiclass/ecoc/ECOCStrategy.h
|  
* commit 62a810bd783a0e88e2a28a72b4f97f10e2d43f65
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 15:16:32 2012 +0400
| 
|     Fixes memory allocation at ocas
| 
| M	src/shogun/multiclass/MulticlassOCAS.cpp
|  
* commit dbaf77fefb810e2e79929ad5de388202f057cdb7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 14:49:21 2012 +0400
| 
|     Fixed includes in external libs
| 
| M	src/shogun/lib/external/pr_loqo.cpp
| M	src/shogun/lib/external/ssl.cpp
|  
* commit 3dba11cddbf8db07f1e436cc23d4138929e71637
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 14:35:12 2012 +0400
| 
|     Moved rejectionstrategy
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/Features_includes.i
| D	src/shogun/features/RejectionStrategy.h
| M	src/shogun/multiclass/MulticlassStrategy.h
| A	src/shogun/multiclass/RejectionStrategy.h
|  
* commit c5b31aa1487d21077517117496ca8271d231a02b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 01:24:06 2012 +0400
| 
|     Updated git ignores
| 
| M	.gitignore
|  
* commit a5b8f1a9b1c4fd7e241681278e149f27abb6f400
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 01:22:23 2012 +0400
| 
|     Added experimental dixon Q test rejection strategy
| 
| M	src/shogun/features/RejectionStrategy.h
|  
* commit 5acfc5bf2e1aa886ba4c073a88698e8551edaf2e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Apr 29 00:06:15 2012 +0400
| 
|     Moved gpdt,gpm,gptdsolve
| 
| M	src/shogun/classifier/svm/GPBTSVM.cpp
| D	src/shogun/classifier/svm/gpdt.cpp
| D	src/shogun/classifier/svm/gpdt.h
| D	src/shogun/classifier/svm/gpdtsolve.cpp
| D	src/shogun/classifier/svm/gpdtsolve.h
| D	src/shogun/classifier/svm/gpm.cpp
| D	src/shogun/classifier/svm/gpm.h
| A	src/shogun/lib/external/gpdt.cpp
| A	src/shogun/lib/external/gpdt.h
| A	src/shogun/lib/external/gpdtsolve.cpp
| A	src/shogun/lib/external/gpdtsolve.h
| A	src/shogun/lib/external/gpm.cpp
| A	src/shogun/lib/external/gpm.h
|  
* commit 974934e751af3745af7b922effb5e7901c10a62f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 28 23:48:04 2012 +0400
| 
|     Moved ssl
| 
| M	src/shogun/classifier/svm/SVMLin.cpp
| D	src/shogun/classifier/svm/ssl.cpp
| D	src/shogun/classifier/svm/ssl.h
| A	src/shogun/lib/external/ssl.cpp
| A	src/shogun/lib/external/ssl.h
|  
* commit c44506e9ff7a3f481e084c7fbcf033d2c05a79f4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 28 23:23:41 2012 +0400
| 
|     Moved pr_loqo
| 
| D	src/shogun/classifier/svm/pr_loqo.cpp
| D	src/shogun/classifier/svm/pr_loqo.h
| A	src/shogun/lib/external/pr_loqo.cpp
| A	src/shogun/lib/external/pr_loqo.h
|  
* commit f21bb9334f77753fec88b885b2465793d00d65bc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 28 17:43:41 2012 +0400
| 
|     Hopefully fixes compilation error of Plif multitask normalizer
| 
| M	src/shogun/transfer/multitask/MultitaskKernelPlifNormalizer.h
|  
* commit 6a9d99ddb8a0e2c834301ab316914f147c59ed7e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 28 17:37:18 2012 +0400
| 
|     Docu fixes
| 
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/KernelMulticlassMachine.h
| M	src/shogun/machine/Machine.h
|    
*   commit 19ab48681bdb74f419032eb2bc696b237fde9215
|\  Merge: 939a60a eea7aa4
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 28 17:31:45 2012 +0400
| | 
| |     Merge branch 'multiclass-ecoc' of git://github.com/pluskid/shogun
| |   
| * commit eea7aa48a5c7e4ca9280e540ce5f5f2e131d1e1c
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sat Apr 28 21:10:06 2012 +0800
| | 
| |     register m_num_classes of MulticlassStrategy.
| | 
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| |   
| * commit 48a8e1bbe4e3a58804ad18d9be0c3e12c9f4ca67
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sat Apr 28 21:06:20 2012 +0800
| | 
| |     Use the remembered num_classes in a MulticlassStrategy
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/multiclass/GMNPSVM.cpp
| | M	src/shogun/multiclass/MulticlassLibSVM.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| | M	src/shogun/multiclass/ScatterSVM.cpp
| |   
| * commit eb35a7c8c9cb133f7b3a8bc15b77dc79219fa09d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sat Apr 28 20:23:00 2012 +0800
| | 
| |     Store number of classes in MulticlassStrategy
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit 0c9f11b208c2624591129ecb978d924afd94abf7
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sat Apr 28 19:18:03 2012 +0800
| | 
| |     remove get_strategy_type since we hope there would be no use of it.
| | 
| | M	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
| | M	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
* | commit 939a60a10605097519bd31756d814c253a5e7a7f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 28 17:12:32 2012 +0400
| | 
| |     Cleaned transfer learning stuff
| | 
| | D	src/interfaces/modular/Multitask.i
| | D	src/interfaces/modular/Multitask_includes.i
| | M	src/interfaces/modular/Transfer.i
| | M	src/shogun/transfer/multitask/MultitaskKernelTreeNormalizer.h
| |   
* | commit 61f6c0e948ba706887f4e5a2a13b8df0e407fffc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 14 02:51:36 2012 +0400
| | 
| |     Transfer learning restructuring
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/interfaces/modular/Classifier_includes.i
| | A	src/interfaces/modular/Transfer.i
| | A	src/interfaces/modular/Transfer_includes.i
| | M	src/interfaces/modular/modshogun.i
| | D	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | D	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | D	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | D	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | D	src/shogun/multitask/MultitaskKernelMaskNormalizer.h
| | D	src/shogun/multitask/MultitaskKernelMaskPairNormalizer.h
| | D	src/shogun/multitask/MultitaskKernelMklNormalizer.h
| | D	src/shogun/multitask/MultitaskKernelNormalizer.h
| | D	src/shogun/multitask/MultitaskKernelPlifNormalizer.h
| | D	src/shogun/multitask/MultitaskKernelTreeNormalizer.h
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.cpp
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationSVM.h
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.cpp
| | A	src/shogun/transfer/domain_adaptation/DomainAdaptationSVMLinear.h
| | A	src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h
| | A	src/shogun/transfer/multitask/MultitaskKernelMaskPairNormalizer.h
| | A	src/shogun/transfer/multitask/MultitaskKernelMklNormalizer.h
| | A	src/shogun/transfer/multitask/MultitaskKernelNormalizer.h
| | A	src/shogun/transfer/multitask/MultitaskKernelPlifNormalizer.h
| | A	src/shogun/transfer/multitask/MultitaskKernelTreeNormalizer.h
| |   
* | commit 9bc6824f69cbd95043da36ed8ec7ccc6eda7ed6f
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon Mar 19 01:51:44 2012 +0400
|   
|       Extracted multitask things
|   
|   M	src/interfaces/modular/Kernel.i
|   M	src/interfaces/modular/Kernel_includes.i
|   A	src/interfaces/modular/Multitask.i
|   A	src/interfaces/modular/Multitask_includes.i
|   D	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
|   D	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
|   D	src/shogun/kernel/MultitaskKernelMklNormalizer.h
|   D	src/shogun/kernel/MultitaskKernelNormalizer.h
|   D	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
|   D	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|   M	src/shogun/kernel/WeightedDegreeStringKernel.h
|   A	src/shogun/multitask/MultitaskKernelMaskNormalizer.h
|   A	src/shogun/multitask/MultitaskKernelMaskPairNormalizer.h
|   A	src/shogun/multitask/MultitaskKernelMklNormalizer.h
|   A	src/shogun/multitask/MultitaskKernelNormalizer.h
|   A	src/shogun/multitask/MultitaskKernelPlifNormalizer.h
|   A	src/shogun/multitask/MultitaskKernelTreeNormalizer.h
|  
* commit 227810dfa74484ae86aa68d8d070aff4801cd5ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 27 08:42:18 2012 +0200
| 
|     don't do SG_FREE on varray.begin
|     
|     This is now handled in the destructor of v_array and additional free's
|     only cause double free bugs.
| 
| M	src/shogun/classifier/vw/VwParser.cpp
| M	src/shogun/classifier/vw/vw_example.cpp
| M	src/shogun/io/IOBuffer.cpp
|    
*   commit 986748a389f9f8dbf9517a7227c473d664c9a099
|\  Merge: 1cf8dff e50ef89
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Apr 25 02:26:35 2012 -0700
| | 
| |     Merge pull request #485 from karlnapf/master
| |     
| |     bug fix reported by Koen van de Sande
| |   
| * commit e50ef89a2b8c50e8ab4ef1d4c7a9e6571db47cc0
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Apr 25 10:11:44 2012 +0100
|   
|       fixed chache bug reported by
|   
|   M	src/shogun/features/SimpleFeatures.cpp
|    
*   commit 1cf8dffebaa9907c118bd6ae6ea8b539046d39f8
|\  Merge: fd6a5ca cd0ca96
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Apr 24 09:55:56 2012 -0700
| | 
| |     Merge pull request #484 from karlnapf/master
| |     
| |     source code documentation updates
| |   
| * commit cd0ca9626272f1cc678c2396f22611ad30ac16cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Apr 24 17:50:57 2012 +0100
| | 
| |     added a check for locking
| | 
| | M	src/shogun/machine/Machine.cpp
| |   
| * commit 71769aff2b6207bc011991eeb73d4adc2b15f633
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Apr 24 17:46:00 2012 +0100
|   
|       documentation TODOs which I collected recently :)
|   
|   M	src/shogun/base/Parameter.h
|   M	src/shogun/evaluation/CrossValidation.h
|   M	src/shogun/features/SimpleFeatures.cpp
|   M	src/shogun/features/SparseFeatures.cpp
|   M	src/shogun/kernel/CustomKernel.h
|   M	src/shogun/machine/KernelMachine.h
|   M	src/shogun/machine/Machine.h
|  
* commit fd6a5caed53c1d72a6c711dfdf72810bae6b92d2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Apr 24 18:27:07 2012 +0400
| 
|     Updated news
| 
| M	src/NEWS
|  
* commit 78ca67c6602743af43de392394cafb8d172c927e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Apr 24 18:21:58 2012 +0400
| 
|     Temporary workaround for libshogun multiclass example
| 
| M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
|    
*   commit 12a9736bc96dc862c67ed8e128bafe126def17b0
|\  Merge: 213e347 daa10e9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Apr 23 13:59:14 2012 -0700
| | 
| |     Merge pull request #483 from gsomix/to_multiclass
| |     
| |     Small fix in example
| |   
| * commit daa10e9676ad1f9711b54288270c74000de6f83d
|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|   Date:   Tue Apr 24 00:56:39 2012 +0400
|   
|       small fix in example
|   
|   M	examples/undocumented/libshogun/classifier_conjugateindex.cpp
|    
*   commit 213e34770c50549bbfbc6dd5c5bf665c1ce53f96
|\  Merge: 6c0c8c5 9bf41c6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Apr 23 10:59:49 2012 -0700
| | 
| |     Merge pull request #482 from gsomix/to_multiclass
| |     
| |     move KNN and ConjugateIndex to shogun/multiclass
| |   
| * commit 9bf41c6bd71ed907023a25a178c3ab2cfcc9fb0e
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Mon Apr 23 21:31:11 2012 +0400
| | 
| |     knn and conjugate to multiclass
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/interfaces/modular/Classifier_includes.i
| | M	src/interfaces/modular/Multiclass.i
| | M	src/interfaces/modular/Multiclass_includes.i
| | D	src/shogun/classifier/ConjugateIndex.cpp
| | D	src/shogun/classifier/ConjugateIndex.h
| | D	src/shogun/classifier/KNN.cpp
| | D	src/shogun/classifier/KNN.h
| | M	src/shogun/clustering/GMM.cpp
| | A	src/shogun/multiclass/ConjugateIndex.cpp
| | A	src/shogun/multiclass/ConjugateIndex.h
| | A	src/shogun/multiclass/KNN.cpp
| | A	src/shogun/multiclass/KNN.h
| | M	src/shogun/ui/GUIClassifier.cpp
| |   
* | commit 6c0c8c52f2b638a469d211cff9eff15a4e34a3e2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Apr 23 19:36:43 2012 +0200
| | 
| |     delete v_array's begin on exit
| |     
| |     This hopefully fixes the memory leak observed in
| |     https://github.com/shogun-toolbox/shogun/pull/401
| | 
| | M	src/shogun/lib/v_array.h
| |   
* | commit a6397963fb780eef929da2b9ff65910ed8187d69
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Apr 23 19:08:34 2012 +0200
| | 
| |     pure whitespace changes
| |     
| |     - convert file to use tabsize 4
| | 
| | M	src/shogun/io/StreamingAsciiFile.cpp
| |     
* |   commit 796536f7ac9f38892ce2705c51df8c30a48587b4
|\ \  Merge: 52c8a82 0c1dcd6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Mon Apr 23 09:56:41 2012 -0700
| |   
| |       Merge pull request #481 from pluskid/multiclass-fix
| |       
| |       Fix a bug in OvR strategy: inc counter in wrong point
| |   
| * commit 0c1dcd608450051ba80104497fc49271f52a6e84
|/  Author: Chiyuan Zhang <pluskid@gmail.com>
|   Date:   Tue Apr 24 00:01:26 2012 +0800
|   
|       Fix a bug in OvR strategy: inc counter in wrong point
|   
|   M	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
|  
* commit 52c8a8246925bc3af4f15e9ccab3affe5d8949b2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Apr 23 19:38:21 2012 +0400
| 
|     A bunch of fixes for multiclass machine
| 
| M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/shogun/machine/MulticlassMachine.cpp
|    
*   commit a3611b43e7931c33a7fe7ba1373292749ad8fbb7
|\  Merge: 5c3d4c4 86f3fca
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Apr 23 02:17:29 2012 -0700
| | 
| |     Merge pull request #479 from pluskid/multiclass-strategy
| |     
| |     Multiclass strategy refactoring
| |   
| * commit 86f3fcaea5e1fe5a206008fbb222d65f9cb8108b
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 23 16:32:11 2012 +0800
| | 
| |     Update referencing code for separating MC strategies into different
| |     files.
| | 
| | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/multiclass/GMNPSVM.cpp
| | M	src/shogun/multiclass/LaRank.cpp
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassLibSVM.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/ScatterSVM.cpp
| |   
| * commit e47f93ac56e663e7da9bcd5d58ad7015d2a6290c
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 23 16:09:13 2012 +0800
| | 
| |     Better use of strategy in multiclassSVM.
| | 
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| |   
| * commit 944d260cfe2e7ca7a4d6256fb196d0e4bd848d50
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 23 16:07:57 2012 +0800
| | 
| |     Move different MC Strategies into separate files.
| | 
| | A	src/shogun/multiclass/MulticlassOneVsOneStrategy.cpp
| | A	src/shogun/multiclass/MulticlassOneVsOneStrategy.h
| | A	src/shogun/multiclass/MulticlassOneVsRestStrategy.cpp
| | A	src/shogun/multiclass/MulticlassOneVsRestStrategy.h
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit e751c5b725a9e8b2f1cf94d4faa7c69028a7c1c9
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 23 10:03:13 2012 +0800
| | 
| |     Use SGVector default constructor instead of normal ctor with 0-length.
| | 
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| |   
| * commit ac8da10c762466fe618366241849aac221fdcdcd
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 23 09:39:20 2012 +0800
| | 
| |     Make changes according to new subset system.
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit 9acb379b6595267d20f861a3e6692376b911c70d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 19:12:50 2012 +0800
| | 
| |     Remove debug code.
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| |   
| * commit 6e4328d3b9454b34875428684c2b00d96c7605ab
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 19:10:31 2012 +0800
| | 
| |     Fix a stupid bug on counting OvO num machines.
| | 
| | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | M	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit 0d7b1c07e1b282f42c52a4326cd2a2a7224b44d7
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 16:50:54 2012 +0800
| | 
| |     Move calling of CLabels::get_num_classes outside the loop
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
| * commit a0a267d37f3207c94c8caf7f9d2e32b98e7625b5
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 16:46:08 2012 +0800
| | 
| |     Use external num_class param when applying, because the machine might
| |     not be trained with the strategy object.
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit 13598ccb75d0ac7088f8588aa33d4cbefd4a44ec
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 16:03:18 2012 +0800
| | 
| |     Refactor multiclass_machine apply(int) to use strategy
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| |   
| * commit 2331975af449c3655f51c12c41331f087d769097
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 15:55:43 2012 +0800
| | 
| |     Remove the unused rejection_strategy in MulticlassMachine
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| |   
| * commit 4d1ecabf64702f9b4e6e047182bc56c768c2085e
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 15:03:25 2012 +0800
| | 
| |     Move classification logic from MulticlassMachine to MulticlassStrategy
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit d92d594a25793088bfb1136f3e711cd416aaedd2
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 13:58:53 2012 +0800
| | 
| |     Move training logic from MulticlassMachine to MulticlassStrategy
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | A	src/shogun/multiclass/MulticlassStrategy.cpp
| | M	src/shogun/multiclass/MulticlassStrategy.h
| |   
| * commit 04634f831fc985d1aba3564ea28faa1180824cbb
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 22 12:26:28 2012 +0800
| | 
| |     Refactor: prepare for more feature rich MulticlassStrategy
| | 
| | M	src/shogun/classifier/mkl/MKLMulticlass.cpp
| | M	src/shogun/machine/KernelMulticlassMachine.h
| | M	src/shogun/machine/LinearMulticlassMachine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/GMNPSVM.cpp
| | M	src/shogun/multiclass/LaRank.cpp
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassLibSVM.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassSVM.h
| | A	src/shogun/multiclass/MulticlassStrategy.h
| | M	src/shogun/multiclass/ScatterSVM.cpp
| |   
* | commit 5c3d4c4db932b45dd72d0181b89be144e866df49
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Mon Apr 23 06:16:26 2012 +0200
|   
|       disable printing of combinations
|   
|   M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
|    
*   commit 64c7a3b08cc7f8572791ec16a2243608c7d26328
|\  Merge: 85eddff d2f3365
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Apr 22 11:01:19 2012 -0700
| | 
| |     Merge pull request #480 from karlnapf/master
| |     
| |     Implement the new SubsetStack system
| |   
| * commit d2f336591ae37d80a6e498f0ea5c78ab79f57714
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:39:19 2012 +0100
| | 
| |     renamed some methods according to new subset system
| |     SGVector to const SGVector&
| | 
| | M	src/shogun/machine/LinearMulticlassMachine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
| * commit f4f850b30291237dc722f929211074d0651781ec
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:38:55 2012 +0100
| | 
| |     SGVector to const SGVector&
| | 
| | M	src/shogun/machine/KernelMulticlassMachine.h
| |   
| * commit 0fd589cea40f3203088e6d95760570cb087ff48f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:38:50 2012 +0100
| | 
| |     make get_last_element  work
| | 
| | M	src/shogun/lib/DynamicObjectArray.h
| |   
| * commit 61129649840bc3c1476361f5bff172ca9e4f196e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:38:34 2012 +0100
| | 
| |     added warnings and non-generic DynamicObjectArray
| | 
| | M	src/shogun/features/SubsetStack.h
| |   
| * commit afc11aad482b6c33ea5a8fbe48dbe84aca74256d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:38:20 2012 +0100
| | 
| |     non-generic DynamicObjectArray
| | 
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit 8a98ac75a69c416608d60d9cb6d2bf6787f76654
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:38:07 2012 +0100
| | 
| |     SGVector to const SGVector&
| |     bugfix in get_unique_labels (subset case)
| | 
| | M	src/shogun/features/Labels.cpp
| |   
| * commit 0372e31e8099d78d48edbe86d84e96a09765a4aa
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Apr 22 18:37:48 2012 +0100
| | 
| |     SGVector to const SGVector&
| | 
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/Features.h
| | M	src/shogun/features/Labels.h
| | M	src/shogun/features/Subset.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| |   
| * commit 83de31875d5614d940ff4e0747c0c8fdda59c5b0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 22:15:17 2012 +0100
| | 
| |     whitespace
| | 
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit fe3318a970f652850606fc8f2a34cbf4743ff735
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 17:00:23 2012 +0100
| | 
| |     make these examples work with new subset system
| | 
| | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| |   
| * commit 28bf02358edb2929d0da8751c664bee3119fae13
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 16:54:47 2012 +0100
| | 
| |     bugfixes and some new legality checks when a subset is added
| | 
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit 27e46c15abfc017dd3380cd7cda136a7ac15a58c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 16:54:23 2012 +0100
| | 
| |     bugfixes to make new subset system work
| | 
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/kernel/CustomKernel.cpp
| | M	src/shogun/machine/Machine.cpp
| |   
| * commit c7482f543f16262ff7025e8f86962473d60e0ac1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 16:53:41 2012 +0100
| | 
| |     made example smaller while making it work again with new subset system
| | 
| | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| |   
| * commit b85ef2ec90696737952aef2529594ced9c1c5108
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 16:07:43 2012 +0100
| | 
| |     made example much smaller
| | 
| | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| |   
| * commit 677a033840cb80769a5c13fa73721dacb4a53e60
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 15:59:52 2012 +0100
| | 
| |     fixed a problem with multiple adding row_subsets in train_locked
| | 
| | M	src/shogun/machine/KernelMachine.cpp
| |   
| * commit de1176f8e786d0897a7107319fc341498592bd00
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 15:59:31 2012 +0100
| | 
| |     added debug messages and fixed the problem of adding row subsets
| | 
| | M	src/shogun/kernel/CustomKernel.cpp
| |   
| * commit 79d4b26c2b388fdc157a492be5e3e62c8cd5177a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 15:59:02 2012 +0100
| | 
| |     changed CSubset to always make a copy of supplied index vectors
| | 
| | M	src/shogun/features/Subset.cpp
| | M	src/shogun/features/Subset.h
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit ccd7f6e0fe94bc1bb6677e90474ef1f37d6c1ebe
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:58:46 2012 +0100
| | 
| |     added a basic subset_stack example/test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/features_subset_stack.cpp
| |   
| * commit aab1ae283e7d895ee9afb02b01912ee190001659
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:58:30 2012 +0100
| | 
| |     bug fixes, changes, comments
| | 
| | M	src/shogun/features/Subset.cpp
| | M	src/shogun/features/Subset.h
| | M	src/shogun/features/SubsetStack.cpp
| |   
| * commit cbbe7b703d13318584d6f1088700d7feffea2fb6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:16:54 2012 +0100
| | 
| |     made examples run again with new subset system
| | 
| | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit c87729ab0a920bc1b860f2902a06ae42b6e04001
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:16:41 2012 +0100
| | 
| |     applied subset stack system changes
| | 
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/Features.h
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/Labels.h
| | M	src/shogun/features/SimpleFeatures.cpp
| | M	src/shogun/features/SparseFeatures.cpp
| | M	src/shogun/features/StringFeatures.cpp
| | M	src/shogun/kernel/CustomKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/LinearMulticlassMachine.h
| | M	src/shogun/machine/Machine.cpp
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
| * commit 1ade5c8f54fd802300c5a179435c16340e263984
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:15:48 2012 +0100
| | 
| |     added get_last_element()
| | 
| | M	src/shogun/lib/DynamicArray.h
| | M	src/shogun/lib/DynamicObjectArray.h
| |   
| * commit ebe5e4a40813744a8ab460e6708759fd8e6e1c93
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Apr 21 14:14:55 2012 +0100
| | 
| |     added get_last_element()
| | 
| | M	src/shogun/base/DynArray.h
| |   
| * commit 4c2952823fc35122a41641a17360a425aae84ed2
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sat Apr 21 14:14:40 2012 +0100
|   
|       Changed subset system to use stacks of subsets.
|       These are the basic classes needed for this
|   
|   M	src/shogun/features/Subset.cpp
|   M	src/shogun/features/Subset.h
|   A	src/shogun/features/SubsetStack.cpp
|   A	src/shogun/features/SubsetStack.h
|    
*   commit 85eddff367f241dc79d6731937bcbb0bd495b36c
|\  Merge: fe148c9 3255521
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Apr 21 20:54:15 2012 -0700
| | 
| |     Merge pull request #478 from karlnapf/master
| |     
| |     made DynamicObjectArray non-generic
| |   
| * commit 32555211e57f9b13ee0c2f804b053a858a022e15
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Sat Apr 21 23:27:44 2012 +0100
|   
|       made CDynamicObjectArray non-generic and updated all usages, examples
|       and interfaces
|   
|   M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
|   M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
|   M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
|   M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
|   M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
|   M	src/interfaces/modular/ModelSelection.i
|   M	src/shogun/base/DynArray.h
|   M	src/shogun/evaluation/CrossValidationSplitting.cpp
|   M	src/shogun/evaluation/SplittingStrategy.cpp
|   M	src/shogun/evaluation/SplittingStrategy.h
|   M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
|   M	src/shogun/lib/DynamicObjectArray.h
|   M	src/shogun/machine/MulticlassMachine.cpp
|   M	src/shogun/machine/MulticlassMachine.h
|   M	src/shogun/modelselection/GridSearchModelSelection.cpp
|   M	src/shogun/modelselection/ModelSelectionParameters.cpp
|   M	src/shogun/modelselection/ModelSelectionParameters.h
|   M	src/shogun/modelselection/ParameterCombination.cpp
|   M	src/shogun/modelselection/ParameterCombination.h
|  
* commit fe148c9344b3f8ed50c74b3965997f7a9c00af94
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 21 19:39:09 2012 +0400
| 
|     Fixed mkl applying in static
| 
| M	src/shogun/ui/GUIClassifier.cpp
|  
* commit 3b42d65e3ca7dcd56b64308cf1d6cba4e54ac88c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 21 18:51:13 2012 +0400
| 
|     Fixed static interface multiclass handling
| 
| M	src/shogun/ui/GUIClassifier.cpp
|  
* commit 8c82c550c15d20bce7f71284a82ee19028500d3e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 21 18:28:08 2012 +0400
| 
|     Finally fixed multiclasslibsvm example
| 
| M	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
|    
*   commit 8fc3ac9864475167f963ad32b3e12c020b83cde6
|\  Merge: c40fbf4 e63503a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 21 16:55:40 2012 +0400
| | 
| |     Merge branch 'multiclass-fix2' of git://github.com/pluskid/shogun
| |   
| * commit e63503a8b8fe839429e79fd85b4c287f73e0cd4d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sat Apr 21 20:52:48 2012 +0800
| | 
| |     Move apply(int) from MulticlassSVM to MulticlassMachine
| | 
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassSVM.h
| |   
* | commit c40fbf4324ef6ca1513118814215970c874b3b45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 21 16:51:20 2012 +0400
| | 
| |     Libshogun example fix
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/classifier_libsvmmulticlass.cpp
| | A	examples/undocumented/libshogun/classifier_multiclasslibsvm.cpp
| |   
* | commit ba8306d2ea4317a3c7d60b870d6f321e81689a16
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sat Apr 21 16:31:38 2012 +0400
|   
|       Fix for GUIClassifier include
|   
|   M	src/shogun/ui/GUIClassifier.cpp
|  
* commit b4dc784cea6df530ce7d8e9c9a2238e785a08873
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 21 16:24:26 2012 +0400
| 
|     A bunch of multiclass fixes and improvements
| 
| D	examples/undocumented/csharp_modular/classifier_libsvmmulticlass_modular.cs
| A	examples/undocumented/csharp_modular/classifier_multiclasslibsvm_modular.cs
| D	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| A	examples/undocumented/java_modular/classifier_multiclasslibsvm_modular.java
| D	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| A	examples/undocumented/octave_modular/classifier_multiclasslibsvm_modular.m
| D	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| A	examples/undocumented/python_modular/classifier_multiclasslibsvm_modular.py
| D	examples/undocumented/python_static/classifier_gmnpsvm.py
| D	examples/undocumented/python_static/classifier_libsvmmulticlass.py
| A	examples/undocumented/python_static/multiclass_gmnpsvm.py
| A	examples/undocumented/python_static/multiclass_multiclasslibsvm.py
| D	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| A	examples/undocumented/r_modular/classifier_multiclasslibsvm_modular.R
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Multiclass.i
| M	src/interfaces/modular/Multiclass_includes.i
| M	src/shogun/classifier/mkl/MKLMulticlass.h
| D	src/shogun/classifier/svm/GMNPLib.cpp
| D	src/shogun/classifier/svm/GMNPLib.h
| D	src/shogun/classifier/svm/GMNPSVM.cpp
| D	src/shogun/classifier/svm/GMNPSVM.h
| D	src/shogun/classifier/svm/LaRank.cpp
| D	src/shogun/classifier/svm/LaRank.h
| D	src/shogun/classifier/svm/LibSVMMulticlass.cpp
| D	src/shogun/classifier/svm/LibSVMMulticlass.h
| D	src/shogun/classifier/svm/ScatterSVM.cpp
| D	src/shogun/classifier/svm/ScatterSVM.h
| A	src/shogun/multiclass/GMNPLib.cpp
| A	src/shogun/multiclass/GMNPLib.h
| A	src/shogun/multiclass/GMNPSVM.cpp
| A	src/shogun/multiclass/GMNPSVM.h
| A	src/shogun/multiclass/LaRank.cpp
| A	src/shogun/multiclass/LaRank.h
| A	src/shogun/multiclass/MulticlassLibSVM.cpp
| A	src/shogun/multiclass/MulticlassLibSVM.h
| M	src/shogun/multiclass/MulticlassSVM.h
| A	src/shogun/multiclass/ScatterSVM.cpp
| A	src/shogun/multiclass/ScatterSVM.h
| M	src/shogun/ui/GUIClassifier.cpp
|  
* commit 17cf7c46199ddc69eb56388e710f93fc4199f965
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 21 01:02:35 2012 +0200
| 
|     workaround fix that fixes compile error of multiclass examples
|     
|     real fix should remove apply(int) from MulticlassSVM (and move it
|     		MulticlassMachine) instead
| 
| M	src/shogun/classifier/mkl/MKLMulticlass.h
| M	src/shogun/classifier/svm/LibSVMMulticlass.h
|    
*   commit 4d9d67700bc0f1e6e5385730168676be90a1bc44
|\  Merge: d7fa352 f37ee57
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Apr 20 15:03:24 2012 -0700
| | 
| |     Merge pull request #475 from vigsterkr/master
| |     
| |     Show the inherited functions in the doxygen doc
| |   
| * commit f37ee575338bd37444ba0cd2e9453a342f4225b8
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Fri Apr 20 23:59:24 2012 +0200
|   
|       Show inherited functions in the class documentation
|   
|   M	doc/Doxyfile
|  
* commit d7fa3526cbe0da5aa627f2623a7d5e207adb3c99
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 22:36:42 2012 +0200
| 
|     MultiClass -> Multiclass replacement in all remaining examples
| 
| M	examples/undocumented/cmdline_static/classifier_libsvmmulticlass.sg
| M	examples/undocumented/cmdline_static/mkl_multiclass.sg
| M	examples/undocumented/csharp_modular/classifier_libsvmmulticlass_modular.cs
| M	examples/undocumented/csharp_modular/mkl_multiclass_modular.cs
| M	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| M	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	examples/undocumented/python_static/classifier_libsvmmulticlass.py
| M	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| M	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| M	examples/undocumented/r_static/classifier_libsvmmulticlass.R
|  
* commit 3ae4ea03f801df8346cbaac8b2e06b7d9b71790c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 22:34:57 2012 +0200
| 
|     fix examples MultiClass -> Multiclass
| 
| M	examples/undocumented/libshogun/classifier_libsvmmulticlass.cpp
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit c3f4f1a4f1920660bed44a5b8f2c4ce34cf4ac25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 20:16:40 2012 +0200
| 
|     another MultiClass -> Multiclass include fix
| 
| M	examples/undocumented/libshogun/classifier_libsvmmulticlass.cpp
|  
* commit b3088307f4cbc466068dbdc2b98192801ecc1a1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 20:13:51 2012 +0200
| 
|     fix include MultiClass -> Multiclass
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit 71a09b923377d579e6543ad74804127d918a28bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 20:09:42 2012 +0200
| 
|     fix compile warnings
| 
| M	src/shogun/machine/MulticlassMachine.cpp
|  
* commit 59517c4e680a2df645de887b93c2dbd965f4aae8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 19:58:24 2012 +0200
| 
|     add missing friend 'class' Foo to fix compile error
| 
| M	src/shogun/classifier/svm/SVM.h
|    
*   commit 816f99fd281c72f30f52a28fec3cb6b491c8d567
|\  Merge: bbb5dfe bb8887b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Apr 20 10:47:50 2012 -0700
| | 
| |     Merge pull request #474 from gsomix/big_deal_with_sgvector
| |     
| |     add SGVector& typemaps for 'smooth' transition
| |   
| * commit bb8887b9f20b96ea04b07cc7ae8ac963c1375a4c
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:23:36 2012 +0400
| | 
| |     SGVector->SGVector& in ruby modular
| | 
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| |   
| * commit 4a1c09da1c31924999529a3b779b1d829a87a46a
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:23:26 2012 +0400
| | 
| |     SGVector->SGVector& in java modular
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
| * commit 2431131b67a21622619d80426565097a77a92c3f
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:23:14 2012 +0400
| | 
| |     SGVector->SGVector& in csharp modular
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| |   
| * commit 465d4c322e3b339728cff94e22c3ccf57431d348
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:23:01 2012 +0400
| | 
| |     SGVector->SGVector& in lua modular
| | 
| | M	src/interfaces/lua_modular/swig_typemaps.i
| |   
| * commit 50d5e9db6494633c5cd20b015f4927a000562227
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:22:49 2012 +0400
| | 
| |     SGVector->SGVector& in r modular
| | 
| | M	src/interfaces/r_modular/swig_typemaps.i
| |   
| * commit 28186295fc138f4ab776d89d994a98bfc643f669
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:22:40 2012 +0400
| | 
| |     SGVector->SGVector& in octave modular
| | 
| | M	src/interfaces/octave_modular/swig_typemaps.i
| |   
| * commit 38bf5169f874a5f76f92ad820dbb3a0e9c1c241b
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Apr 20 21:22:27 2012 +0400
| | 
| |     SGVector->SGVector& in python modular
| | 
| | M	src/interfaces/python_modular/swig_typemaps.i
| |     
* |   commit bbb5dfe3a28bc3e03f49927f1f9f84bac30efacf
|\ \  Merge: 3886d3e d02c229
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Fri Apr 20 10:46:40 2012 -0700
| |   
| |       Merge pull request #458 from pluskid/multiclass-refactor2
| |       
| |       Refactoring of multiclass
| |   
| * commit d02c22948ef3aee8ab8e23b80467e4345da3b1be
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Fri Apr 20 19:15:45 2012 +0800
| | 
| |     Fix the type for m_machines in CMulticlassMachine.
| | 
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/machine/KernelMulticlassMachine.h
| | M	src/shogun/machine/LinearMulticlassMachine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassSVM.h
| |   
| * commit ea31155bbf3d83ed394d7ba5c1e9923950a33c5d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Fri Apr 20 18:59:34 2012 +0800
| | 
| |     multiclassMachine: Use DynamicObjectArray instead of SGVector for m_machines.
| | 
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/machine/KernelMulticlassMachine.h
| | M	src/shogun/machine/LinearMulticlassMachine.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| | M	src/shogun/multiclass/MulticlassSVM.h
| |   
| * commit 80a3a5711222e8aaab7546bc5a10fa77526d3e4f
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Fri Apr 20 13:40:59 2012 +0800
| | 
| |     multiclasssvm read/write multiclass_strategy
| | 
| | M	src/shogun/multiclass/MulticlassSVM.cpp
| |   
| * commit 8698005b442795f6223488e9d8ca1f7e83ff900d
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Fri Apr 20 13:09:39 2012 +0800
| | 
| |     fix naming convention: MultiClass => Multiclass
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/interfaces/modular/Classifier_includes.i
| | D	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | D	src/shogun/classifier/mkl/MKLMultiClass.h
| | D	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | D	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | D	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | D	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | D	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | D	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | A	src/shogun/classifier/mkl/MKLMulticlass.cpp
| | A	src/shogun/classifier/mkl/MKLMulticlass.h
| | A	src/shogun/classifier/mkl/MKLMulticlassGLPK.cpp
| | A	src/shogun/classifier/mkl/MKLMulticlassGLPK.h
| | A	src/shogun/classifier/mkl/MKLMulticlassGradient.cpp
| | A	src/shogun/classifier/mkl/MKLMulticlassGradient.h
| | A	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.cpp
| | A	src/shogun/classifier/mkl/MKLMulticlassOptimizationBase.h
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.h
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LaRank.h
| | D	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | D	src/shogun/classifier/svm/LibSVMMultiClass.h
| | A	src/shogun/classifier/svm/LibSVMMulticlass.cpp
| | A	src/shogun/classifier/svm/LibSVMMulticlass.h
| | D	src/shogun/classifier/svm/MultiClassSVM.cpp
| | D	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/classifier/svm/SVM.h
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.h
| | A	src/shogun/multiclass/MulticlassSVM.cpp
| | A	src/shogun/multiclass/MulticlassSVM.h
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIClassifier.h
| |   
| * commit e9b341a0e12a5f070ea34c5cb9220596159c500e
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Wed Apr 18 08:40:49 2012 +0800
| | 
| |     code clean: it is not legal to use multiclass svms as MKL constraint
| |     generators (at least curently)
| | 
| | M	src/shogun/ui/GUIClassifier.cpp
| |   
| * commit 75625c475f20d2728a7aafb6ce7ca7c88323936c
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Tue Apr 17 00:44:48 2012 +0800
| | 
| |     remove debug code.
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| |   
| * commit c73de12c722625594eb5d346ec11569a59f18569
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 16 16:42:59 2012 +0800
| | 
| |     Minor modification to clean up refactoring.
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/machine/MulticlassMachine.h
| |   
| * commit 4d587c908d9ddb778776ae28619e07c66e4485ca
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 16 16:15:33 2012 +0800
| | 
| |     Refactor the code of one-vs-one and one-vs-rest.
| | 
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/machine/MulticlassMachine.cpp
| | M	src/shogun/machine/MulticlassMachine.h
| |   
| * commit 751b70ba70fe2c23ef3ddb7011410f04ab2eaaf7
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 16 11:03:28 2012 +0800
| | 
| |     Remove duplicated code in MulticlassSVM, use those in base class instead.
| | 
| | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/machine/MulticlassMachine.cpp
| |   
| * commit 7b2d14955292d8576138bdb92399cf93ad7eaada
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Mon Apr 16 09:38:13 2012 +0800
| | 
| |     Use MulticlassMachine facilities to store multiclass svms
| | 
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| |   
| * commit 4b86ffed9bea39f13a6f170b72df65e1dac18ad2
| | Author: Chiyuan Zhang <pluskid@gmail.com>
| | Date:   Sun Apr 15 22:46:46 2012 +0800
| | 
| |     Multiclass refactoring: preliminary clean up, compile OK.
| | 
| | M	src/interfaces/modular/Classifier.i
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/classifier/svm/SVM.h
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| |   
* | commit 3886d3e86e0f8ee4e37c8f733e71330498e6f5a4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Apr 20 08:11:24 2012 +0200
| | 
| |     fix compile error: make LARS unavailable w/o lapack
| | 
| | M	src/shogun/regression/LARS.cpp
| | M	src/shogun/regression/LARS.h
| |     
* |   commit d209502c78c0ef6f593bd9730c341fa4f8ee9ac9
|\ \  Merge: 22976ff 311eabd
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Apr 19 23:05:19 2012 -0700
| | | 
| | |     Merge pull request #472 from gsomix/big_deal_with_sgvector
| | |     
| | |     Start with SGVector -> SGVector& migration
| | |    
| * | commit 311eabdb5ed7820168ddea142a6bfd2cdc22c6de
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:27:36 2012 +0400
| | | 
| | |     fixes, related to SGVector->SGVector&
| | | 
| | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | | M	src/shogun/preprocessor/SumOne.cpp
| | |    
| * | commit 1f603bbbfa6a6d48c77f3cf6d9c46dc258ead00d
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:16:12 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in modular
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/modshogun_ignores.i
| | |    
| * | commit 1be362a58df304968aa3f94a88125211b881d132
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:11:47 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in math
| | | 
| | | M	src/shogun/mathematics/Statistics.cpp
| | | M	src/shogun/mathematics/Statistics.h
| | |    
| * | commit f950827a103e1366947525c561906efbdc1dba57
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:09:49 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in classifiers
| | | 
| | | M	src/shogun/classifier/ConjugateIndex.cpp
| | | M	src/shogun/classifier/ConjugateIndex.h
| | |    
| * | commit 80706948c2b1aa277a61964ce94557c711013072
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:07:57 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in SVMs
| | | 
| | | M	src/shogun/classifier/svm/LibLinear.h
| | | M	src/shogun/classifier/svm/SVM.cpp
| | | M	src/shogun/classifier/svm/SVM.h
| | |    
| * | commit 5f9410fd6bff22815cb79ff4d204de7fddcf12d4
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:05:33 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in clustering
| | | 
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/clustering/GMM.h
| | |    
| * | commit f06f865ba438358e209f5e415bd6d5a50b193f4c
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 02:02:46 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in distributions
| | | 
| | | M	src/shogun/distributions/Gaussian.cpp
| | | M	src/shogun/distributions/Gaussian.h
| | | M	src/shogun/distributions/Histogram.cpp
| | | M	src/shogun/distributions/Histogram.h
| | | M	src/shogun/distributions/LinearHMM.cpp
| | | M	src/shogun/distributions/LinearHMM.h
| | |    
| * | commit c1158dd62ab89abe46fd39d779a681d1bce1086d
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 01:59:02 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in features
| | | 
| | | M	src/shogun/features/DotFeatures.cpp
| | | M	src/shogun/features/DotFeatures.h
| | | M	src/shogun/features/Features.cpp
| | | M	src/shogun/features/Features.h
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/features/RejectionStrategy.h
| | | M	src/shogun/features/SimpleFeatures.cpp
| | | M	src/shogun/features/SimpleFeatures.h
| | | M	src/shogun/features/SparseFeatures.cpp
| | | M	src/shogun/features/SparseFeatures.h
| | | M	src/shogun/features/StreamingSimpleFeatures.cpp
| | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | M	src/shogun/features/StringFeatures.cpp
| | | M	src/shogun/features/StringFeatures.h
| | | M	src/shogun/features/Subset.cpp
| | | M	src/shogun/features/Subset.h
| | | M	src/shogun/features/WDFeatures.cpp
| | | M	src/shogun/features/WDFeatures.h
| | |    
| * | commit 903f20580091bb28e236d5ffca4321212c3ef1ca
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 01:48:13 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in kernels
| | | 
| | | M	src/shogun/kernel/CombinedKernel.cpp
| | | M	src/shogun/kernel/CombinedKernel.h
| | | M	src/shogun/kernel/CustomKernel.h
| | | M	src/shogun/kernel/DirectorKernel.h
| | | M	src/shogun/kernel/Kernel.cpp
| | | M	src/shogun/kernel/Kernel.h
| | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | M	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | |    
| * | commit 648fedaa7d5bc3046e2617f6b45d58cfeb0440ed
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 01:43:05 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in modelselection
| | | 
| | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | |    
| * | commit 2e07a2c5d227fd5483bb6abf0d463ab59db70de0
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Apr 20 01:41:26 2012 +0400
| | | 
| | |     SGVector->SGVector& for arguments in machines
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/LinearMachine.h
| | | M	src/shogun/machine/Machine.h
| | |    
| * | commit 29b4e7a82bd48d27322f2444d90dd8d1e3595b92
| |/  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Fri Apr 20 01:32:49 2012 +0400
| |   
| |       SGVector->SGVector& for arguments in preprocessors
| |   
| |   M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| |   M	src/shogun/preprocessor/HomogeneousKernelMap.h
| |   M	src/shogun/preprocessor/KernelPCA.cpp
| |   M	src/shogun/preprocessor/KernelPCA.h
| |   M	src/shogun/preprocessor/LogPlusOne.cpp
| |   M	src/shogun/preprocessor/LogPlusOne.h
| |   M	src/shogun/preprocessor/NormOne.cpp
| |   M	src/shogun/preprocessor/NormOne.h
| |   M	src/shogun/preprocessor/PCA.cpp
| |   M	src/shogun/preprocessor/PCA.h
| |   M	src/shogun/preprocessor/PNorm.cpp
| |   M	src/shogun/preprocessor/PNorm.h
| |   M	src/shogun/preprocessor/PruneVarSubMean.cpp
| |   M	src/shogun/preprocessor/PruneVarSubMean.h
| |   M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| |   M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| |   M	src/shogun/preprocessor/SimplePreprocessor.h
| |   M	src/shogun/preprocessor/SumOne.cpp
| |   M	src/shogun/preprocessor/SumOne.h
| |     
* |   commit 22976fffb260cab4b57af5e05e22c2f3b6306cdb
|\ \  Merge: 521cfb3 d215f93
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Thu Apr 19 22:59:24 2012 -0700
| |   
| |       Merge pull request #473 from gsomix/python3_interface
| |       
| |       Fixed regression gaussian process example for python3 support
| |   
| * commit d215f930f4dedd360f06d7e3a3f48dcbc3457ded
|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|   Date:   Fri Apr 20 02:58:37 2012 +0400
|   
|       fixed regression gaussian process example for python3 support
|   
|   M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
|  
* commit 521cfb3be2555814c67d5e497193f44a197b2d05
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 19:47:19 2012 +0200
| 
|     fix doxygen documentation related errors
| 
| M	src/shogun/kernel/LocalAlignmentStringKernel.h
| M	src/shogun/regression/KernelRidgeRegression.h
|  
* commit 81a7de82908efdf08e1c6da28f66de0976614070
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 19:47:07 2012 +0200
| 
|     fix compile warning in libqp_gsmo
| 
| M	src/shogun/lib/external/libqp_gsmo.cpp
|    
*   commit b6a3029692fc56c6cd51d5511c2126280ce9440d
|\  Merge: e4bedb5 e06e1a3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Apr 19 04:20:04 2012 -0700
| | 
| |     Merge pull request #470 from vigsterkr/qp
| |     
| |     add libqp_gsmo_solver
| |   
| * commit e06e1a31ba3d64ea54a808de05bedfa65b9c84ff
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Thu Apr 19 10:15:21 2012 +0200
|   
|       Add libqp_gsmo implementation from libqp
|       As libqp.h contains the definition for libqp_gsmo_solver
|       the implementation of it should be included as well in shogun
|   
|   A	src/shogun/lib/external/libqp_gsmo.cpp
|  
* commit e4bedb59469f8fd7842cedc63d42b1046e731327
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 13:10:51 2012 +0200
| 
|     change MAXFLOAT -> FLT_MAX
| 
| M	src/shogun/lib/JLCoverTree.h
|  
* commit 4f93b7138ef54b98dc65c6a4ff54007615b5fa42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 11:41:38 2012 +0200
| 
|     remove values.h include
| 
| M	src/shogun/lib/JLCoverTree.h
|  
* commit 8160c4d6b1968b4243f6a0f4cd52e98257368a8b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 09:19:37 2012 +0200
| 
|     fix various documentations and thus doxygen warnings
| 
| M	src/shogun/classifier/NearestCentroid.h
| M	src/shogun/distance/Distance.h
| M	src/shogun/lib/List.h
| M	src/shogun/regression/KernelRidgeRegression.h
|  
* commit 01b1b8d63fed0556f1239ecfe742947e5a8e83a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 09:15:53 2012 +0200
| 
|     fix tron path in liblinear
| 
| M	src/shogun/classifier/svm/LibLinear.cpp
|  
* commit 37e12a20f741b4d3e097248e92bdd093798748a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 08:09:27 2012 +0200
| 
|     fix wrong include paths for libsvm/liblinear
| 
| M	src/shogun/lib/external/shogun_liblinear.cpp
| M	src/shogun/lib/external/shogun_libsvm.cpp
|  
* commit b7561827e82e549826785db3e60ddf778a5e2848
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 19 07:59:05 2012 +0200
| 
|     move graphical regression_lars example to graphical
| 
| A	examples/undocumented/python_modular/graphical/regression_lars.py
| D	examples/undocumented/python_modular/regression_lars.py
|    
*   commit 2e95d359ad400c9a0fc85ec4ebb12ffa092e61dd
|\  Merge: e1ae8f2 6940f33
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 18 22:57:37 2012 -0700
| | 
| |     Merge pull request #454 from lisitsyn/external_libs
| |     
| |     move a number of classes not to be used from the outside to lib/external
| |   
| * commit 6940f336f6e96b92e3b5156ee59908605930eb3a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Apr 15 02:58:23 2012 +0400
| | 
| |     Moved some libraries to separate folder
| | 
| | M	src/shogun/classifier/svm/GPBTSVM.h
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibLinear.h
| | M	src/shogun/classifier/svm/LibSVM.h
| | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | M	src/shogun/classifier/svm/SVMOcas.h
| | D	src/shogun/classifier/svm/SVM_libsvm.cpp
| | D	src/shogun/classifier/svm/SVM_libsvm.h
| | D	src/shogun/classifier/svm/SVM_linear.cpp
| | D	src/shogun/classifier/svm/SVM_linear.h
| | M	src/shogun/classifier/svm/ScatterSVM.h
| | D	src/shogun/classifier/svm/Tron.cpp
| | D	src/shogun/classifier/svm/Tron.h
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | D	src/shogun/classifier/svm/libocas.cpp
| | D	src/shogun/classifier/svm/libocas.h
| | D	src/shogun/classifier/svm/libocas_common.h
| | D	src/shogun/classifier/svm/libqp.h
| | D	src/shogun/classifier/svm/libqp_splx.cpp
| | A	src/shogun/lib/external/libocas.cpp
| | A	src/shogun/lib/external/libocas.h
| | A	src/shogun/lib/external/libocas_common.h
| | A	src/shogun/lib/external/libqp.h
| | A	src/shogun/lib/external/libqp_splx.cpp
| | A	src/shogun/lib/external/shogun_liblinear.cpp
| | A	src/shogun/lib/external/shogun_liblinear.h
| | A	src/shogun/lib/external/shogun_libsvm.cpp
| | A	src/shogun/lib/external/shogun_libsvm.h
| | A	src/shogun/lib/external/tron.cpp
| | A	src/shogun/lib/external/tron.h
| | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | M	src/shogun/multiclass/MulticlassLibLinear.h
| | M	src/shogun/multiclass/MulticlassOCAS.h
| | M	src/shogun/regression/svr/LibSVR.h
| |     
* |   commit e1ae8f2120173781eb6a5447a79cbfe46c2415f7
|\ \  Merge: 87008dc 3c117eb
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 18 13:38:20 2012 -0700
| | | 
| | |     Merge pull request #467 from iglesias/repath-jlcovertree
| | |     
| | |     John Langford's Cover Tree Integration
| | |    
| * | commit 3c117eb6f32e5d79a2ba9d1ff96bb6a101843043
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Apr 18 22:01:24 2012 +0200
| | | 
| | |     ~ timeval -> shogun's CTime
| | | 
| | | M	src/shogun/classifier/KNN.cpp
| | |    
| * | commit dfe3f2169e3f05893cb5755761f355638dce0422
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Apr 18 10:13:14 2012 +0200
| | | 
| | |     ~ modifications to cover tree to look more shogun like
| | | 
| | | M	src/shogun/classifier/KNN.cpp
| | | M	src/shogun/lib/JLCoverTree.h
| | |    
| * | commit d216b1a56967fb73a35bb9f3d3b04f184656d50e
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Tue Apr 17 12:34:33 2012 +0200
| | | 
| | |     ~ k not included in model selectection, q != 1 not supported by cover tree
| | | 
| | | M	src/shogun/classifier/KNN.cpp
| | |    
| * | commit 0a3596b76646fdc4aa54b7d37c965842e637fdb9
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Apr 15 02:14:23 2012 +0200
| | | 
| | |     + JL's cover tree support in KNN
| | | 
| | | M	src/shogun/classifier/KNN.cpp
| | | M	src/shogun/classifier/KNN.h
| | |    
| * | commit e814827d4f902cc506514991ebc49192e49c67ec
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Apr 15 02:08:46 2012 +0200
| | | 
| | |     * fix compile warnings in JL's cover tree
| | | 
| | | M	src/shogun/lib/JLCoverTree.h
| | |    
| * | commit da383e5a6a71653df966fcfe0706712201e595d9
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Apr 15 01:39:13 2012 +0200
| | | 
| | |     + distance_upper_bounded for beterr KNN with cover tree
| | | 
| | | M	src/shogun/distance/Distance.cpp
| | | M	src/shogun/distance/Distance.h
| | | M	src/shogun/distance/EuclidianDistance.cpp
| | | M	src/shogun/distance/EuclidianDistance.h
| | | M	src/shogun/lib/JLCoverTreePoint.h
| | |    
| * | commit bf189daee2bb55142050435ab17d80df65a67c8f
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Thu Apr 12 13:29:18 2012 +0200
| | | 
| | |     + JL cover tree implementation
| | | 
| | | A	src/shogun/lib/JLCoverTree.h
| | | D	src/shogun/lib/JLCoverTreePoint.cpp
| | | M	src/shogun/lib/JLCoverTreePoint.h
| | |    
| * | commit d830cbbd0beac229aa859d86b99361d644606e99
|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| |   Date:   Thu Apr 12 13:08:35 2012 +0200
| |   
| |       + wrapper between shogun's features and JL's cover tree
| |   
| |   A	src/shogun/lib/JLCoverTreePoint.cpp
| |   A	src/shogun/lib/JLCoverTreePoint.h
| |     
* |   commit 87008dc28334262342243506108f5d7b754e1b3f
|\ \  Merge: d459858 f7cdacc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 18 07:49:13 2012 -0700
| | | 
| | |     Merge pull request #466 from gsomix/python3_interface
| | |     
| | |     Python 3 support for static python interface
| | |    
| * | commit f7cdacc18de8ee8e30061dd046f9eacd4bde36e4
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Wed Apr 18 18:44:36 2012 +0400
| | | 
| | |     fixed string list functions
| | | 
| | | M	examples/undocumented/python_static/classifier_gmnpsvm.py
| | | M	examples/undocumented/python_static/classifier_gpbtsvm.py
| | | M	examples/undocumented/python_static/classifier_knn.py
| | | M	examples/undocumented/python_static/classifier_lda.py
| | | M	examples/undocumented/python_static/classifier_libsvm.py
| | | M	examples/undocumented/python_static/classifier_libsvmmulticlass.py
| | | M	examples/undocumented/python_static/classifier_libsvmoneclass.py
| | | M	examples/undocumented/python_static/classifier_mpdsvm.py
| | | M	examples/undocumented/python_static/classifier_perceptron.py
| | | M	examples/undocumented/python_static/classifier_svmlight.py
| | | M	examples/undocumented/python_static/clustering_hierarchical.py
| | | M	examples/undocumented/python_static/clustering_kmeans.py
| | | M	examples/undocumented/python_static/distance_braycurtis.py
| | | M	examples/undocumented/python_static/distance_canberra.py
| | | M	examples/undocumented/python_static/distance_canberraword.py
| | | M	examples/undocumented/python_static/distance_chebyshew.py
| | | M	examples/undocumented/python_static/distance_chisquare.py
| | | M	examples/undocumented/python_static/distance_cosine.py
| | | M	examples/undocumented/python_static/distance_euclidian.py
| | | M	examples/undocumented/python_static/distance_geodesic.py
| | | M	examples/undocumented/python_static/distance_hammingword.py
| | | M	examples/undocumented/python_static/distance_jensen.py
| | | M	examples/undocumented/python_static/distance_manhatten.py
| | | M	examples/undocumented/python_static/distance_manhattenword.py
| | | M	examples/undocumented/python_static/distance_minkowski.py
| | | M	examples/undocumented/python_static/distance_tanimoto.py
| | | M	examples/undocumented/python_static/distribution_histogram.py
| | | M	examples/undocumented/python_static/distribution_hmm.py
| | | M	examples/undocumented/python_static/distribution_linearhmm.py
| | | M	examples/undocumented/python_static/kernel_chi2.py
| | | M	examples/undocumented/python_static/kernel_combined.py
| | | M	examples/undocumented/python_static/kernel_commulongstring.py
| | | M	examples/undocumented/python_static/kernel_commwordstring.py
| | | M	examples/undocumented/python_static/kernel_const.py
| | | M	examples/undocumented/python_static/kernel_diag.py
| | | M	examples/undocumented/python_static/kernel_fixeddegreestring.py
| | | M	examples/undocumented/python_static/kernel_gaussian.py
| | | M	examples/undocumented/python_static/kernel_gaussianshift.py
| | | M	examples/undocumented/python_static/kernel_linear.py
| | | M	examples/undocumented/python_static/kernel_linearstring.py
| | | M	examples/undocumented/python_static/kernel_linearword.py
| | | M	examples/undocumented/python_static/kernel_localalignmentstring.py
| | | M	examples/undocumented/python_static/kernel_localityimprovedstring.py
| | | M	examples/undocumented/python_static/kernel_oligostring.py
| | | M	examples/undocumented/python_static/kernel_pluginestimatehistogram.py
| | | M	examples/undocumented/python_static/kernel_poly.py
| | | M	examples/undocumented/python_static/kernel_polymatchstring.py
| | | M	examples/undocumented/python_static/kernel_polymatchword.py
| | | M	examples/undocumented/python_static/kernel_salzbergstring.py
| | | M	examples/undocumented/python_static/kernel_sigmoid.py
| | | M	examples/undocumented/python_static/kernel_simplelocalityimprovedstring.py
| | | M	examples/undocumented/python_static/kernel_weightedcommwordstring.py
| | | M	examples/undocumented/python_static/kernel_weighteddegreepositionstring.py
| | | M	examples/undocumented/python_static/kernel_weighteddegreestring.py
| | | M	examples/undocumented/python_static/mkl_multiclass.py
| | | M	examples/undocumented/python_static/mkl_regression.py
| | | M	examples/undocumented/python_static/mkl_twoclass.py
| | | M	examples/undocumented/python_static/preproc_logplusone.py
| | | M	examples/undocumented/python_static/preproc_normone.py
| | | M	examples/undocumented/python_static/preproc_prunevarsubmean.py
| | | M	examples/undocumented/python_static/preproc_sortulongstring.py
| | | M	examples/undocumented/python_static/preproc_sortwordstring.py
| | | M	examples/undocumented/python_static/regression_krr.py
| | | M	examples/undocumented/python_static/regression_libsvr.py
| | | M	examples/undocumented/python_static/regression_svrlight.py
| | | M	src/interfaces/python_static/PythonInterface.cpp
| | | M	src/interfaces/python_static/PythonInterface.h
| | |    
* | | commit d45985836ab8bf175d4b6cc82fb1c8aa7a07f933
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Apr 18 16:46:47 2012 +0200
| |   
| |       convert prepare_POIM2 to SGMatrix
| |   
| |   M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| |   M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| |     
* |   commit e41e6837ca8b637a8f67ccec6ab8cd833ed870fc
|\ \  Merge: c8d40bd 7a84fdb
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 18 04:10:41 2012 -0700
| | | 
| | |     Merge pull request #460 from uricamic/GSKRR
| | |     
| | |     Gauss-Seidel iterative method for Kernel Ridge Regression learning
| | |    
| * | commit 7a84fdb2db2a5a2f114dfbbbf0743ca9722f9803
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Wed Apr 18 09:55:51 2012 +0200
| | | 
| | |     Indentation fixed.
| | | 
| | | M	src/shogun/regression/KernelRidgeRegression.cpp
| | | M	src/shogun/regression/KernelRidgeRegression.h
| | |    
| * | commit 2ae58e9c01f13cb5e5ab50f7c86d6fbcc4ef3d06
| | | Author: Michal Uricar <uricar.michal@gmail.com>
| | | Date:   Tue Apr 17 09:21:49 2012 +0200
| | | 
| | |     GS KRR work on comments
| | | 
| | | M	src/shogun/regression/KernelRidgeRegression.cpp
| | | M	src/shogun/regression/KernelRidgeRegression.h
| | |    
| * | commit ed487055ca3e0df2157d41c76657954619977b0a
|/ /  Author: Michal Uricar <uricar.michal@gmail.com>
| |   Date:   Mon Apr 16 15:34:37 2012 +0200
| |   
| |       Gauss-Seidel iterative method for Kernel Ridge Regression learning
| |   
| |   M	src/shogun/regression/KernelRidgeRegression.cpp
| |   M	src/shogun/regression/KernelRidgeRegression.h
| |     
* |   commit c8d40bd00575f11b1aa9726dc9bd5c71c44110f0
|\ \  Merge: 9dcadb7 9f9912a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Apr 17 15:27:29 2012 -0700
| | | 
| | |     Merge pull request #463 from Victor-Sadkov/master
| | |     
| | |     New statistics sample and various whitespace changes.
| | |    
| * | commit 9f9912a2322b265ebcb82de511050b9291ce87a0
| | | Author: Victor Sadkov <sadkov993@gmail.com>
| | | Date:   Wed Apr 18 02:19:32 2012 +0400
| | | 
| | |     Added new sample code
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/statistics.cpp
| | |    
| * | commit d81a85b934ea8a3e3ad6147600f51bb3a776a15c
| | | Author: Victor Sadkov <sadkov993@gmail.com>
| | | Date:   Sun Apr 15 22:30:28 2012 +0400
| | | 
| | |     Fixed outdated file.
| | | 
| | | M	src/README.developer
| | |      
| * |   commit b95d8be89bf5c1368ef5e2b6ab839e16f4e9024d
| |\ \  Merge: 86820dc ccf7baa
| | | | Author: Victor Sadkov <sadkov993@gmail.com>
| | | | Date:   Sat Apr 14 13:18:47 2012 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/shogun-toolbox/shogun into refactoring
| | | |       
* | | |   commit 9dcadb78cf66caa310d9b7af45ed77c8b7e696f9
|\ \ \ \  Merge: 12c7cc9 23b677d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Apr 18 01:39:32 2012 +0400
| | | | | 
| | | | |     Merge branch 'git-workflow-doc' of git://github.com/pluskid/shogun
| | | | |      
| * | | | commit 23b677db2fed15d5d8effe9ae367a9757046cb87
| | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | Date:   Tue Apr 17 23:29:44 2012 +0800
| | | | | 
| | | | |     Added some notes of git work flow for developers.
| | | | | 
| | | | | M	src/README.developer
| | | | |      
* | | | | commit 12c7cc96be6c3993ec4164713ef826fdc398b82b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Apr 18 01:32:18 2012 +0400
| | | | | 
| | | | |     Updated news
| | | | | 
| | | | | M	src/NEWS
| | | | |      
* | | | | commit fec5e64ed9da9623466eea1d6b0c6b1f43768498
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Apr 18 01:32:10 2012 +0400
| | | | | 
| | | | |     SG_ADD for MC liblinear
| | | | | 
| | | | | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | | | |      
* | | | | commit 68e029833cb73f3aaa3f1a68794c135ec9501c84
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Apr 17 18:41:39 2012 +0200
| | | |   
| | | |       SGVector fix for WD-kernel constructor
| | | |   
| | | |   M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | |   M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | |   M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | | |   M	src/shogun/ui/GUIKernel.cpp
| | | |     
* | | | commit a6e7d75c94d8e81780f1c962fcc055a88d164d13
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Apr 17 17:14:39 2012 +0200
| | | | 
| | | |     convert get_POIM2 to user SGVector
| | | | 
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | |     
* | | | commit 4405e92f596f6439d4d10258def131986ad49cc0
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Apr 17 09:28:49 2012 +0200
| | | | 
| | | |     fix doxygen warning in lars
| | | | 
| | | | M	src/shogun/regression/LARS.h
| | | |       
* | | |   commit 9fab882638a4720c4ac73f3104cdcf817a536a23
|\ \ \ \  Merge: 3f3a7e6 93388b3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Apr 17 00:06:16 2012 -0700
| | | | | 
| | | | |     Merge pull request #461 from jklontz/master
| | | | |     
| | | | |     Remove some deprecated function calls and add cmake project files.
| | | | |      
| * | | | commit 93388b36f70bbc30afe64c4e3be9de0b689c89f0
|/ / / /  Author: Josh Klontz <josh.klontz@gmail.com>
| | | |   Date:   Mon Apr 16 21:00:38 2012 -0400
| | | |   
| | | |       added basic CMake project files
| | | |   
| | | |   A	src/CMakeLists.txt
| | | |   A	src/shogun/CMakeLists.txt
| | | |   M	src/shogun/classifier/vw/VwRegressor.cpp
| | | |   M	src/shogun/lib/v_array.h
| | | |   M	src/shogun/mathematics/Math.cpp
| | | |       
* | | |   commit 3f3a7e619c6cbf7f38e66af8812d5edf4104f0dc
|\ \ \ \  Merge: 120d652 a994b06
| |_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Sun Apr 15 23:22:40 2012 -0700
| | | |   
| | | |       Merge pull request #446 from PhilippeTillet/nearest_centroid
| | | |       
| | | |       Added doxygen comments
| | | |     
| * | | commit a994b066f00ad74eb9edc1080f03f1563afe4d7b
| | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | Date:   Sun Apr 15 22:43:35 2012 +0200
| | | | 
| | | |     Added assertion on feature type, removed store_model_features
| | | | 
| | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | M	src/shogun/classifier/NearestCentroid.h
| | | |     
| * | | commit 50a9e9826662abf831b473687b4efc3151c69484
| | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | Date:   Thu Apr 12 19:17:00 2012 +0200
| | | | 
| | | |     Added doxygen comments
| | | | 
| | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | M	src/shogun/classifier/NearestCentroid.h
| | | |       
* | | |   commit 120d652e45bdd63dfa876239384012453cc270fe
|\ \ \ \  Merge: 6134929 0721a21
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Apr 14 13:27:52 2012 -0700
| | | | | 
| | | | |     Merge pull request #453 from karlnapf/master
| | | | |     
| | | | |     added mkl modelselection example
| | | | |      
| * | | | commit 0721a217a57a42c7ac2b9effb4e0f8e443fce583
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Apr 14 21:26:13 2012 +0100
| | | | | 
| | | | |     added example for mkl modelselection (currently not working, but should
| | | | |     in the future, once bugs are fixed)
| | | | | 
| | | | | A	examples/undocumented/libshogun/modelselection_grid_search_mkl.cpp
| | | | |        
* | | | |   commit 61349298980c9852d0b26d25091b683f7f1dfdd4
|\ \ \ \ \  Merge: 77fee15 bd78b4d
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Sat Apr 14 13:22:45 2012 -0700
| | | | |   
| | | | |       Merge pull request #437 from karlnapf/master
| | | | |       
| | | | |       memory bugfix, initialization, comments and debug messages
| | | | |      
| * | | | commit bd78b4d3459ef2661c397fb8eb07c565461508a5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sat Apr 14 21:19:59 2012 +0100
| | | | | 
| | | | |     SGVector instead of plain array
| | | | | 
| | | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | |      
| * | | | commit 351fc5f40c7692e41c4e55d6a26a2636af33da78
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Apr 9 22:25:14 2012 +0100
| | | | | 
| | | | |     added debug messages
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | |      
| * | | | commit e12a2048baad432f68f075f4a7430a79e0b3e510
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Apr 9 22:25:02 2012 +0100
| | | | | 
| | | | |     added debug messages
| | | | | 
| | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | |      
| * | | | commit d0133cf2ef3acfd45b6aba8d7e04ef376956a3a1
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Apr 9 22:24:49 2012 +0100
| | | |   
| | | |       -added initialisation of mkl_block_norm to std value
| | | |       -added comment about strange set_sub_kernel_weights
| | | |       -fixed a mem leak regarding this comment
| | | |   
| | | |   M	src/shogun/classifier/mkl/MKL.cpp
| | | |     
* | | | commit 77fee150843d8dad3e4e8a7cdf577a062da67dda
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Apr 14 23:16:27 2012 +0400
| | | | 
| | | |     Proper constructor for #438
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |       
* | | |   commit 9c97add35edd018179dff90a22944efb779fcead
|\ \ \ \  Merge: c69ba7c 86820dc
| | |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| |   Date:   Sat Apr 14 14:32:38 2012 +0400
| | | |   
| | | |       Merge branch 'refactoring' of git://github.com/Victor-Sadkov/shogun
| | | |     
| * | | commit 86820dc40d1b353e4b258ac86abc199b57fcf731
| | | | Author: Victor Sadkov <sadkov993@gmail.com>
| | | | Date:   Thu Apr 12 13:50:38 2012 +0400
| | | | 
| | | |     Refactored to satisfy code formatting standards
| | | | 
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.h
| | | |       
* | | |   commit c69ba7c76a4f4513395152bafba4359c1f7437d9
|\ \ \ \  Merge: ccf7baa 865d383
| |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | |   Date:   Sat Apr 14 14:29:15 2012 +0400
| | | |   
| | | |       Merge branch 'lars' of git://github.com/pluskid/shogun
| | | |     
| * | | commit 865d3835fa2c09051744a3b93ddced07fd58b139
| | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | Date:   Thu Apr 12 17:27:48 2012 +0800
| | | | 
| | | |     Bugfix: matrix not initialized in LinearRidgeRegression
| | | | 
| | | | M	examples/undocumented/python_modular/regression_lars.py
| | | | M	src/shogun/machine/Machine.h
| | | | M	src/shogun/regression/LinearRidgeRegression.cpp
| | | |     
| * | | commit 9d1c7b9c677bca5f1bf212a6b3aad896d58a2ec5
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 20:31:47 2012 +0800
| | | | 
| | | |     LARS: remove debug code.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | |     
| * | | commit c468e97110f89fbb55c15e3ed8f4fb0c1318ee7d
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 20:30:07 2012 +0800
| | | | 
| | | |     LARS: python_modular example of LASSO (using LARS), and comparison to OLS
| | | | 
| | | | A	examples/undocumented/python_modular/regression_lars.py
| | | |     
| * | | commit 8aefff0edd8a6f11cce89b2664c87f4bb83a0858
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 20:29:41 2012 +0800
| | | | 
| | | |     LARS: added python_modular interface.
| | | | 
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit d59b550089a5fdd94c2ff05b1aa5ad4b837ec78f
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 16:57:44 2012 +0800
| | | | 
| | | |     LARS: support for early stopping.
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | | M	src/shogun/regression/LARS.cpp
| | | |     
| * | | commit 6cbb8fd58994faac92116f6377974e7c1b6689a4
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 15:36:09 2012 +0800
| | | | 
| | | |     LARS: record estimators along the algorithm loop.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit 280d6fbfeaeb98bc34c1044ac051d0c977aeb69b
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 13:35:40 2012 +0800
| | | | 
| | | |     LARS: refactor cholesky updating procedures.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit db69f98b4b2db3460f4074858f679cd5dcab3c7b
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 13:17:59 2012 +0800
| | | | 
| | | |     LARS: Refactor activate/deactivate function.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit 2b61e96c36ba85949e48f5117dd02eae9f525729
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Wed Apr 11 12:18:31 2012 +0800
| | | | 
| | | |     rename LARS to CLARS
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit d460e42b671c8c5ffdfd4ba24bee4e90c0164741
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 21:30:14 2012 +0800
| | | | 
| | | |     Remove some debug code.
| | | | 
| | | | M	examples/undocumented/python_modular/regression_least_squares_modular.py
| | | |     
| * | | commit ab3927d93fda970fc4d61e443d300f3bf80d0bd7
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 21:20:18 2012 +0800
| | | | 
| | | |     LARS: fix a stupid bug, wrong impl of manual mat multiplication.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | |     
| * | | commit 5dd9205664f43db022654c616270ad1dcb88e5a9
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 19:58:29 2012 +0800
| | | | 
| | | |     LARS: fix a bug on using wrong vector.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | |     
| * | | commit d3eac63bc3de72b6cb19aeefcbd128403b38a436
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 19:10:04 2012 +0800
| | | | 
| | | |     A basic working LARS (Lasso), verified on simple case.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit 9161f14e8a8024039b0c85a6587f1c1fb54436a3
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 17:38:58 2012 +0800
| | | | 
| | | |     minor modification to fix compile warnings in io.
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | | M	src/shogun/io/AsciiFile.h
| | | | M	src/shogun/io/BinaryFile.cpp
| | | | M	src/shogun/io/BinaryFile.h
| | | | M	src/shogun/io/File.cpp
| | | | M	src/shogun/io/File.h
| | | |     
| * | | commit 8c57bfae7ea32ec627ea47138e1cc65563e48004
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Tue Apr 10 16:25:19 2012 +0800
| | | | 
| | | |     The first compilable version of LARS.
| | | | 
| | | | M	src/shogun/regression/LARS.cpp
| | | | M	src/shogun/regression/LARS.h
| | | |     
| * | | commit 2e5fca616196b93178d17d0906d453624592ee53
| |/ /  Author: pluskid <pluskid@gmail.com>
| | |   Date:   Mon Apr 9 20:18:51 2012 +0800
| | |   
| | |       Unfinished, commit for switching to other work temporarilly.
| | |   
| | |   M	examples/undocumented/python_modular/regression_least_squares_modular.py
| | |   A	src/shogun/regression/LARS.cpp
| | |   A	src/shogun/regression/LARS.h
| | |      
* | |   commit ccf7baa267198084a9fd311cf2c6409b7b719b0e
|\ \ \  Merge: 21bdbe7 da63761
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Apr 13 12:27:40 2012 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/vigsterkr/shogun
| | | |     
| * | | commit da637618410206bb46860413fbf84e604f07c65f
| | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | Date:   Fri Apr 13 10:21:32 2012 +0200
| | | | 
| | | |     PNorm: initialise the norm to 0.0 in the beginning
| | | | 
| | | | M	src/shogun/preprocessor/PNorm.cpp
| | | |       
* | | |   commit 21bdbe77a44fe8a81e99fa6d856d7da09299d38e
|\ \ \ \  Merge: 7a440ff 004f46c
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Apr 13 01:09:11 2012 -0700
| | | |   
| | | |       Merge pull request #447 from vigsterkr/master
| | | |       
| | | |       yet another fix for PNorm doxygen comment
| | | |     
| * | | commit 004f46c4d629975f4c8da0dbc524bd81024fa49a
|/ / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | |   Date:   Fri Apr 13 10:06:41 2012 +0200
| | |   
| | |       Fix for PNorm constructor doxygen comment
| | |   
| | |   M	src/shogun/preprocessor/PNorm.h
| | |    
* | | commit 7a440ff438c552c4b932810d51c136f583d55e7b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Apr 12 21:37:39 2012 +0400
| | | 
| | |     Exposed Subset in modular #445
| | | 
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/Features_includes.i
| | |      
* | |   commit a1bd841959cefa4d4815edc61d4762dd11ab7bf4
|\ \ \  Merge: dd35073 59e01dd
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Apr 12 10:13:37 2012 -0700
| | | | 
| | | |     Merge pull request #439 from gsomix/sgprogress
| | | |     
| | | |     add SG_PROGRESS messages to Gaussian Naive Bayes
| | | |     
| * | | commit 59e01ddb57322ec50c3f073a3da560a1e30b79a3
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Thu Apr 12 18:09:05 2012 +0400
| | | | 
| | | |     minor improvement
| | | | 
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | |     
| * | | commit 88755357058da7c24aba70b5d6400a6264440043
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Thu Apr 12 17:20:52 2012 +0400
| | | | 
| | | |     fixed SG_PROGRESS in GNB
| | | | 
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | |     
| * | | commit 234c365ceb206fc6a113e60c783be621243549a2
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed Apr 11 00:44:57 2012 +0400
| | | | 
| | | |     added sg_progress messages in gaussian naive bayes
| | | | 
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | |       
* | | |   commit dd35073bb5f708d5dc1e7afac1134c57ae951407
|\ \ \ \  Merge: 7b34f6c af5764b
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Apr 12 08:19:14 2012 -0700
| | | | | 
| | | | |     Merge pull request #443 from vigsterkr/master
| | | | |     
| | | | |     Fix doxygen comment for PNorm
| | | | |      
| * | | | commit af5764b6e4b1710dd85d96feaee9233fdf554272
|/ / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | |   Date:   Thu Apr 12 17:14:05 2012 +0200
| | | |   
| | | |       Fix doxygen comment for getter/setter functions
| | | |   
| | | |   M	src/shogun/preprocessor/PNorm.h
| | | |     
* | | | commit 7b34f6c0bf0ad1eeef18be80f959b3b9653b2e4c
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Apr 12 16:37:53 2012 +0200
| | |   
| | |       use ${SWIG} instead of explicit swig in configure
| | |       
| | |       thanks Paul Bünau for the report
| | |   
| | |   M	src/configure
| | |      
* | |   commit 7383e03ed96a76b333ebed107fb9fd2d3089bbaa
|\ \ \  Merge: 9714897 c5415ab
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Thu Apr 12 17:52:26 2012 +0400
| | |   
| | |       Merge branch 'master' of git://github.com/puffin444/shogun
| | |    
| * | commit c5415ab8f30e044d4ac72ba43b8dc64f741a6e7d
| | | Author: Jacob Walker <walke434@msu.edu>
| | | Date:   Thu Apr 12 09:45:37 2012 +0000
| | | 
| | |     Hopefully fixed strange memory bug in CGaussianProcessRegression::GetCovarianceMatrix
| | | 
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | |    
* | | commit 97148978a1cc8754486e4fbd9a7530e0ba26674e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Apr 12 01:59:33 2012 +0400
| | | 
| | |     Got rid of larank deprecated warning
| | | 
| | | M	src/shogun/classifier/svm/LaRank.h
| | |    
* | | commit 7ecc3c9c5dfcc947804e6154c9922b64d92a7c05
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 11 21:50:00 2012 +0200
| | | 
| | |     Fix compile error in twonorm() when lapack is not available
| | | 
| | | M	src/shogun/mathematics/Math.cpp
| | |      
* | |   commit 2297a970f558eb93c5818195e9cdaa8e55e02df9
|\ \ \  Merge: cedefbb dca40f6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Apr 11 02:17:17 2012 -0700
| | | | 
| | | |     Merge pull request #440 from iglesias/knn-covertree
| | | |     
| | | |     Minor bugfixes in KNN
| | | |     
| * | | commit dca40f6cc6a646bb8df290e84534e11ed1fce52c
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Wed Apr 11 08:58:07 2012 +0200
| | | | 
| | | |     ~ fix assert to allow KNN queries of less TEST vectors than number of neigbors K
| | | | 
| | | | M	src/shogun/classifier/KNN.cpp
| | | |     
| * | | commit 277153283d3f2313784abbd2740c2f604174a10c
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Mon Apr 9 15:21:25 2012 +0200
| | | | 
| | | |     + KNN initialization of some variables to avoid compile warnings
| | | | 
| | | | M	src/shogun/classifier/KNN.cpp
| | | |       
* | | |   commit cedefbb66dfd73b6221a3f312a18b580154448bb
|\ \ \ \  Merge: 1d6c34e 46f471a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| / /   Date:   Wed Apr 11 02:16:06 2012 -0700
| |/ /    
| | |         Merge pull request #406 from puffin444/master
| | |         
| | |         Gaussian Process Regression
| | |    
| * | commit 46f471a781e74a324f445abbdb956f7a97caa1d2
| | | Author: puffin444 <jacobw@localhost.(none)>
| | | Date:   Tue Apr 10 14:07:15 2012 +0000
| | | 
| | |     Mean predictions in GaussianProcessRegression now solved using Cholesky
| | |     decomposition. Predicted Covariance Matrix is also accessible.
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.h
| | |    
| * | commit 3e484efdff52e924686c7bbde549d84472fa8048
| | | Author: puffin444 <jacobw@localhost.(none)>
| | | Date:   Tue Apr 3 19:32:49 2012 +0000
| | | 
| | |     Fixed some more formatting errors. Added Copyright.
| | | 
| | | M	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | M	src/shogun/regression/GaussianProcessRegression.h
| | |      
| * |   commit a67ab51e493b9d27c053fe72763e04630555b6b5
| |\ \  Merge: a8e0ad5 0176afb
| | | | Author: root <root@localhost.(none)>
| | | | Date:   Tue Apr 3 15:40:12 2012 +0000
| | | | 
| | | |     Fixing merge conflicts...
| | | |     Merge remote branch 'upstream/master'
| | | |     
| | | |     Conflicts:
| | | |     	src/shogun/machine/Machine.h
| | | |     
| * | | commit a8e0ad5bf4925639636abf0ab2487e147eaa10c5
| | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | Date:   Mon Apr 2 12:51:01 2012 +0000
| | | | 
| | | |     renamed example files for Gaussian Process mean predictions
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | D	examples/undocumented/libshogun/mean_prediction_minimal.cpp
| | | | A	examples/undocumented/libshogun/regression_gaussian_process.cpp
| | | | D	examples/undocumented/python_modular/mean_predicitions_minimal.py
| | | | A	examples/undocumented/python_modular/regression_gaussian_process_modular.py
| | | |     
| * | | commit b891706a0ddcc57a7e81baf30124c2b6796fb7e8
| | | | Author: root <root@localhost.(none)>
| | | | Date:   Sun Apr 1 17:45:41 2012 +0000
| | | | 
| | | |     Added python example for GaussianProcessRegression mean predictions
| | | | 
| | | | A	examples/undocumented/python_modular/mean_predicitions_minimal.py
| | | | M	src/interfaces/modular/Regression.i
| | | | M	src/interfaces/modular/Regression_includes.i
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | |     
| * | | commit e90d23919d18a06a73e17542ae311c45be05ba5c
| | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | Date:   Sat Mar 31 19:58:37 2012 +0000
| | | | 
| | | |     Fixed a few formatting errors. Added getter for m_sigma in CGaussianProcessRegression
| | | | 
| | | | M	src/shogun/regression/GaussianProcessRegression.cpp
| | | | M	src/shogun/regression/GaussianProcessRegression.h
| | | |     
| * | | commit f741c049a89bac84904a2c1ae07a9d797dad9213
| | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | Date:   Sat Mar 31 15:04:20 2012 +0000
| | | | 
| | | |     Added very basic implementation of GaussianProcessRegression class with
| | | |     tiny example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | M	examples/undocumented/libshogun/mean_prediction_minimal.cpp
| | | | M	src/shogun/machine/Machine.h
| | | | A	src/shogun/regression/GaussianProcessRegression.cpp
| | | | A	src/shogun/regression/GaussianProcessRegression.h
| | | |       
| * | |   commit f95a2058c407159a6e2dcd3b37d9f368a62005ab
| |\ \ \  Merge: 5ccbcda cac2a88
| | | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | | Date:   Sat Mar 31 13:27:09 2012 +0000
| | | | | 
| | | | |     Merge remote branch 'upstream/master'
| | | | |        
| * | | |   commit 5ccbcdae8f8e4095f20407c0b4e93f211bceea19
| |\ \ \ \  Merge: d6d0e3d b862acc
| | | | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | | | Date:   Tue Mar 27 16:26:54 2012 +0000
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |         
| * | | | |   commit d6d0e3d5b00bd13ebc728bac0a417819956b41d1
| |\ \ \ \ \  Merge: f74e0c0 a170eac
| | | | | | | Author: puffin444 <jacobw@localhost.(none)>
| | | | | | | Date:   Fri Mar 23 18:08:05 2012 +0000
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master'
| | | | | | |        
| * | | | | | commit f74e0c0873925b9c983564898652e5ea736ddbc9
| | | | | | | Author: jacobw <jacobw@localhost.(none)>
| | | | | | | Date:   Wed Mar 21 18:16:06 2012 +0000
| | | | | | | 
| | | | | | |     Added a very simple test case for mean predictions of a Gaussian
| | | | | | |     Process.
| | | | | | | 
| | | | | | | A	examples/undocumented/libshogun/mean_prediction_minimal.cpp
| | | | | | |          
* | | | | | |   commit 1d6c34e485bd17864806ecf9b6908545b179acb5
|\ \ \ \ \ \ \  Merge: 0af0391 43bde14
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Tue Apr 10 08:13:32 2012 +0400
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/vigsterkr/shogun
| | | | | | | |         
| * | | | | | | commit 43bde14dcd565606e49295687b2d1cfb4aa7b7ff
| | | | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | | | Date:   Tue Apr 10 00:18:33 2012 +0200
| | | | | | | | 
| | | | | | | |     Fix qnorm calculation
| | | | | | | |     absolute value should be taken of each element before calculating
| | | | | | | |     the q power of the element
| | | | | | | | 
| | | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | | |         
| * | | | | | | commit 57384541706bac71915ae6bd8409ae33a11126bb
| | | | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | | | Date:   Tue Apr 10 00:14:09 2012 +0200
| | | | | | | | 
| | | | | | | |     PNorm: changes suggested by Soeren
| | | | | | | | 
| | | | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | | | M	src/shogun/preprocessor/PNorm.cpp
| | | | | | | |         
| * | | | | | | commit 1419ccb6883fddd027385397df67e51b9da8ca41
| | | | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | | | Date:   Mon Apr 9 21:20:28 2012 +0200
| | | | | | | | 
| | | | | | | |     Add PNorm to modular interface
| | | | | | | | 
| | | | | | | | M	src/interfaces/modular/Preprocessor.i
| | | | | | | | M	src/interfaces/modular/Preprocessor_includes.i
| | | | | | | |         
| * | | | | | | commit 9ecea55adc76487e26a2cf14383ee6b723a714fd
| | | | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | | | Date:   Mon Apr 9 21:16:06 2012 +0200
| | | | | | | | 
| | | | | | | |     PNorm: change function naming
| | | | | | | | 
| | | | | | | | M	src/shogun/preprocessor/PNorm.cpp
| | | | | | | | M	src/shogun/preprocessor/PNorm.h
| | | | | | | |         
| * | | | | | | commit 5e289be8cf99af35319dcdf4fd2c8ebfc1cdf6b2
| | | | | | | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | | | | | | Date:   Mon Apr 9 21:11:43 2012 +0200
| | | | | | | | 
| | | | | | | |     Add P-Norm preprocessor
| | | | | | | | 
| | | | | | | | A	src/shogun/preprocessor/PNorm.cpp
| | | | | | | | A	src/shogun/preprocessor/PNorm.h
| | | | | | | | M	src/shogun/preprocessor/Preprocessor.h
| | | | | | | |           
* | | | | | | |   commit 0af03918cfb3aceca339b59fdcc1d92292e25af3
|\ \ \ \ \ \ \ \  Merge: 4cfa1a7 05a9033
| | |_|_|_|_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | | | |   Date:   Tue Apr 10 08:13:01 2012 +0400
| | | | | | | |   
| | | | | | | |       Merge branch 'nearest_centroid' of git://github.com/PhilippeTillet/shogun
| | | | | | | |         
| * | | | | | | commit 05a9033d93f58841b82f565caa8a586e2b64eb0c
| | | | | | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | | | | | Date:   Mon Apr 9 23:11:32 2012 +0200
| | | | | | | | 
| | | | | | | |     Added abs path in NearestCentroid include
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | | | | |         
| * | | | | | | commit 48747b94d9e0801564bdb7702c0ff1fb046d164e
| | | | | | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | | | | | Date:   Mon Apr 9 22:53:05 2012 +0200
| | | | | | | | 
| | | | | | | |     Fixes
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_nearest_centroid.cpp
| | | | | | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | | | | |         
| * | | | | | | commit 582a69cf970ba844084c4b8a66fd45523b944a14
| | | | | | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | | | | | Date:   Sun Apr 8 20:17:18 2012 +0200
| | | | | | | | 
| | | | | | | |     * Fixed the example include and comments
| | | | | | | |     * Added GPL Header
| | | | | | | |     * Removed apply()
| | | | | | | |     * For loop style changed
| | | | | | | |     * Now construct matrix before constructing features
| | | | | | | |     * Fixed memory leaks
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_nearest_centroid.cpp
| | | | | | | | M	src/shogun/classifier/NearestCentroid.cpp
| | | | | | | | M	src/shogun/classifier/NearestCentroid.h
| | | | | | | |         
| * | | | | | | commit 5137b4187e2b3b462197d6db8915f161e7bd9663
| | | | | | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | | | | | Date:   Sun Apr 8 19:52:53 2012 +0200
| | | | | | | | 
| | | | | | | |     Added Nearest Centroid Classifier
| | | | | | | | 
| | | | | | | | A	examples/undocumented/libshogun/classifier_nearest_centroid.cpp
| | | | | | | | A	src/shogun/classifier/NearestCentroid.cpp
| | | | | | | | A	src/shogun/classifier/NearestCentroid.h
| | | | | | | |         
* | | | | | | | commit 4cfa1a7705518fd6d15cf5284a6ba8d58515b0b9
| |/ / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | | |   Date:   Tue Apr 10 01:13:37 2012 +0400
| | | | | | |   
| | | | | | |       Updated NEWS
| | | | | | |   
| | | | | | |   M	src/NEWS
| | | | | | |        
* | | | | | | commit 7a082bd35595d4bc864f18d2fe5b648e9d0d2f72
| | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | Date:   Mon Apr 9 20:40:08 2012 +0800
| | | | | | | 
| | | | | | |     Remove debug code.
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | |        
* | | | | | | commit 2b0de1614e4ccbc846e3aed9a46a17d4fbfd7152
| | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | Date:   Mon Apr 9 20:36:12 2012 +0800
| | | | | | | 
| | | | | | |     Fetch one feature vector at a time instead of the whole feature matrix for potential large-scale training.
| | | | | | | 
| | | | | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | | | |        
* | | | | | | commit 5ace4f5bc605dac2dacf73f84b784f2cb7163791
|/ / / / / /  Author: pluskid <pluskid@gmail.com>
| | | | | |   Date:   Mon Apr 9 20:28:24 2012 +0800
| | | | | |   
| | | | | |       GNB: replace SGVector with SGMatrix to make the code easier to read.
| | | | | |   
| | | | | |   M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | |   M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | | |   M	src/shogun/classifier/GaussianNaiveBayes.h
| | | | | |         
* | | | | |   commit 1f76d8dc50f8fc92d53e3f21b95d9e4a8128a6fd
|\ \ \ \ \ \  Merge: d41e472 ee142b5
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Sun Apr 8 05:49:52 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #428 from karlnapf/master
| | | | | | |     
| | | | | | |     subset stacks
| | | | | | |        
| * | | | | | commit ee142b59a8b2efe781e944d3736bc626cf48f69e
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Sun Apr 8 13:48:03 2012 +0100
| | | | | | | 
| | | | | | |     updated documentation stuff and copyright
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.h
| | | | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | | | M	src/shogun/features/StringFeatures.h
| | | | | | |        
| * | | | | | commit fefe76885c4c6fff79aba9ee97dfc251d54938a0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:52:18 2012 +0100
| | | | | | | 
| | | | | | |     applied subset system name changes
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | | | |        
| * | | | | | commit 737d11b2f926afc6059ed60047fdee6d74171853
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:47:48 2012 +0100
| | | | | | | 
| | | | | | |     push_subset is now add_subset
| | | | | | |     pop_subset is now remove_subset
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.h
| | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | |        
| * | | | | | commit 44a1252be0df546f0c84c8fde7e43e7fabae2647
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:46:43 2012 +0100
| | | | | | | 
| | | | | | |     -push_subset is now add_subset
| | | | | | |     -pop_subset is now remove_subset
| | | | | | | 
| | | | | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | | | | M	src/shogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 0b32f54397cbba81f9f1e2a9e745bc2ccf4ecb5e
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:42:56 2012 +0100
| | | | | | | 
| | | | | | |     bugfix
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 1a9875a7bc355d751a3e2da8c26349981ab142c3
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:38:41 2012 +0100
| | | | | | | 
| | | | | | |     if there is only one subset, update_active_subset does not use it directly
| | | | | | |     instead of recomputing
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 53be5cd10be0fd8dc77bef8d65b7c61c56c6e418
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:17:14 2012 +0100
| | | | | | | 
| | | | | | |     added entry about new subset stacks
| | | | | | | 
| | | | | | | M	src/NEWS
| | | | | | |        
| * | | | | | commit ed561df9e2f31e4c0f724e3e7d387df662d6e13f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:13:33 2012 +0100
| | | | | | | 
| | | | | | |     replaced SGNOTIMPLEMENTED by warning
| | | | | | | 
| | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | |        
| * | | | | | commit ee2fdd0cfbce1c4b4dd52ad42addcbd913ff84a0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:13:21 2012 +0100
| | | | | | | 
| | | | | | |     dont use copies of subsets anymore due to the magic of reference counting
| | | | | | | 
| | | | | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | | | |        
| * | | | | | commit f74681dd4c87a14daae204d3aa1de148c8d2374c
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 23:12:48 2012 +0100
| | | | | | | 
| | | | | | |     update_active subset now rebuilds everytime, removing subsets wont work otherwise
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 56ea3469fa7deaa371f4b245d24f385e7c3c904e
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 22:36:15 2012 +0100
| | | | | | | 
| | | | | | |     applied changes of new subset system
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | | | |        
| * | | | | | commit 7a850bad3615e919833b3f5bfe2f48f27e60f99f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 22:31:38 2012 +0100
| | | | | | | 
| | | | | | |     more bugfixes for pop
| | | | | | | 
| | | | | | | M	src/shogun/lib/List.h
| | | | | | |        
| * | | | | | commit 156b4a135553839cc41b486702f5ec0a883e99c7
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 22:24:49 2012 +0100
| | | | | | | 
| | | | | | |     fixed copy paste error in a comment
| | | | | | | 
| | | | | | | M	src/shogun/evaluation/SplittingStrategy.h
| | | | | | |        
| * | | | | | commit 73c2b590a0cdde7d9654f15483a02c7631481732
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 22:24:33 2012 +0100
| | | | | | | 
| | | | | | |     -added my name in copyright
| | | | | | |     -fixed bugs in pop
| | | | | | |     -added print_list
| | | | | | | 
| | | | | | | M	src/shogun/lib/List.h
| | | | | | |        
| * | | | | | commit 54041cb5f9108afee1c04e26b7d8e1d2e2c99d3f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:48:40 2012 +0100
| | | | | | | 
| | | | | | |     made examples work again
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| | | | | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | | | |        
| * | | | | | commit 78eb955f367deea20b22140f7ab9f3b63aa411ae
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:48:22 2012 +0100
| | | | | | | 
| | | | | | |     memory bugfix
| | | | | | | 
| | | | | | | M	src/shogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit e741c1890b11616113499c854447c63fa5d39f55
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:48:11 2012 +0100
| | | | | | | 
| | | | | | |     memory leak fix
| | | | | | | 
| | | | | | | M	src/shogun/features/StringFeatures.cpp
| | | | | | |        
| * | | | | | commit 56a13309c0a327f953fd980aabbc015774b28d36
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:32:56 2012 +0100
| | | | | | | 
| | | | | | |     commented out stuff which has to be revised due to subset system change
| | | | | | | 
| | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | |        
| * | | | | | commit 81cd50727b3640e3906ee58272df281b48d85c78
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:32:38 2012 +0100
| | | | | | | 
| | | | | | |     cross-validation now uses new subset stack system, so its possible to use cross-validation on already subsetted features
| | | | | | | 
| | | | | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | | | |        
| * | | | | | commit 517ea59f8a144c45fc97e5b7986b407d21b5f344
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:32:04 2012 +0100
| | | | | | | 
| | | | | | |     added min method
| | | | | | | 
| | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | |        
| * | | | | | commit 2edeb8262c08e433f7f2cbc5eb461cc9720b3d06
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:31:53 2012 +0100
| | | | | | | 
| | | | | | |     added pop and push methods
| | | | | | | 
| | | | | | | M	src/shogun/lib/List.h
| | | | | | |        
| * | | | | | commit 0abcf50e08ae6f1f597bfe5e7cea8c90a088f364
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:31:36 2012 +0100
| | | | | | | 
| | | | | | |     added methods to get largest and smallest index for legaty checks
| | | | | | | 
| | | | | | | M	src/shogun/features/Subset.cpp
| | | | | | | M	src/shogun/features/Subset.h
| | | | | | |        
| * | | | | | commit d51928cf28141ec766ae90e3578f934bcf150bf2
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Fri Apr 6 21:31:09 2012 +0100
| | | | | | | 
| | | | | | |     applied subset system changes
| | | | | | | 
| | | | | | | M	src/shogun/features/SimpleFeatures.cpp
| | | | | | | M	src/shogun/features/SparseFeatures.cpp
| | | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | | | M	src/shogun/features/StringFeatures.cpp
| | | | | | | M	src/shogun/features/StringFeatures.h
| | | | | | |        
| * | | | | | commit 9785538c3f8829b055fad49d2286e92dbcc008bb
|/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Fri Apr 6 21:30:48 2012 +0100
| | | | | |   
| | | | | |       changed subset system to use a stack of subsets
| | | | | |   
| | | | | |   M	src/shogun/features/Features.cpp
| | | | | |   M	src/shogun/features/Features.h
| | | | | |         
* | | | | |   commit d41e472641d2d22fc8b74d41733b27349eb5d161
|\ \ \ \ \ \  Merge: d3d6896 9fff8c2
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sun Apr 8 14:32:36 2012 +0400
| | | | | | | 
| | | | | | |     Merge branch 'normalized-mutual-info' of git://github.com/pluskid/shogun
| | | | | | |        
| * | | | | | commit 9fff8c29c356fa30e68033af01663c23f3fe7816
| | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | Date:   Sun Apr 8 12:41:34 2012 +0800
| | | | | | | 
| | | | | | |     Fix compile warning in ClusteringEvaluation.
| | | | | | | 
| | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | | | |        
* | | | | | | commit d3d689603f81bd973fe4023eb678dbf3ad3f8476
| | | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | | Date:   Sun Apr 8 12:48:13 2012 +0400
| | | | | | | 
| | | | | | |     minor fix
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/kernel_custom_modular.py
| | | | | | |        
* | | | | | | commit e6de7a8b6426111915713a279234e7dd1979c811
|/ / / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | |   Date:   Sun Apr 8 12:44:40 2012 +0400
| | | | | |   
| | | | | |       fixed set_triangle_kernel_matrix_from_full in custom kernel
| | | | | |   
| | | | | |   M	examples/undocumented/python_modular/kernel_custom_modular.py
| | | | | |   M	src/shogun/kernel/CustomKernel.cpp
| | | | | |   M	src/shogun/kernel/CustomKernel.h
| | | | | |         
* | | | | |   commit beae706087f0ff25518d1d60939097d7489204a2
|\ \ \ \ \ \  Merge: 91afac4 aba67a6
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sat Apr 7 14:00:22 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #430 from gsomix/sparse_octave
| | | | | | |     
| | | | | | |     Sparse matrix typemap for octave modular.
| | | | | | |        
| * | | | | | commit aba67a632489f7b69d4ffe0f1e4626ffad5ab470
| | | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | | Date:   Sun Apr 8 00:05:29 2012 +0400
| | | | | | | 
| | | | | | |     small fixes
| | | | | | | 
| | | | | | | M	examples/undocumented/octave_modular/features_sparse_modular.m
| | | | | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | | | |        
| * | | | | | commit db9e6a5de438c9a83a472292864311bb0792627a
| | | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | | Date:   Sat Apr 7 23:39:02 2012 +0400
| | | | | | | 
| | | | | | |     added sparse matrix typemap for octave_modular
| | | | | | | 
| | | | | | | A	examples/undocumented/octave_modular/features_sparse_modular.m
| | | | | | | M	src/interfaces/octave_modular/swig_typemaps.i
| | | | | | |        
* | | | | | | commit 91afac4dab10b5196e5ec7a393a00c01fd62eeeb
|/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Sat Apr 7 22:59:07 2012 +0200
| | | | | |   
| | | | | |       fix compilation of java_modular
| | | | | |       
| | | | | |       - disable covertree serialization in KNN
| | | | | |       - put KNN POINT type into modshogun ignores
| | | | | |   
| | | | | |   M	src/interfaces/modular/modshogun_ignores.i
| | | | | |   M	src/shogun/classifier/KNN.cpp
| | | | | |       
* | | | | | commit 4d011393630d7fedbaffd23159c34b1c49b4dc1e
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 7 21:16:29 2012 +0200
| | | | | | 
| | | | | |     convert the float32 based dot function to return float32 - no need for
| | | | | |     float64_t inflasion
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | |       
* | | | | | commit 233148ca2df7a6f00c9b01f23424d69cd2e71069
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 7 20:26:12 2012 +0200
| | | | | | 
| | | | | |     enter debug mode for tester when -d is specified
| | | | | | 
| | | | | | M	testsuite/python_modular/tester.py
| | | | | |         
* | | | | |   commit 68dab4aaacbea7711955f4b20aa13decaf88c1e0
|\ \ \ \ \ \  Merge: 0631960 c18f564
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sat Apr 7 11:09:40 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #429 from iglesias/qda
| | | | | | |     
| | | | | | |     QDA for python_modular's testsuite
| | | | | | |        
| * | | | | | commit c18f5647bcfa09e55850df957c0e2b17b79cc062
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sat Apr 7 08:58:35 2012 +0200
| | | | | | | 
| | | | | | |     + QDA for testsuite python_modular
| | | | | | | 
| | | | | | | A	examples/undocumented/python_modular/classifier_qda_modular.py
| | | | | | |        
* | | | | | | commit 0631960f7a65eac1592e903cacbfae3e25902b6a
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sat Apr 7 18:30:39 2012 +0400
| | | | | | | 
| | | | | | |     Performance fix for single precision dot operation
| | | | | | | 
| | | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | | |        
* | | | | | | commit c07174dc4f6186fbeffe3ed5184a86ed8a1edfcf
|/ / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | |   Date:   Sat Apr 7 17:14:23 2012 +0400
| | | | | |   
| | | | | |       Proper memory handling for #409
| | | | | |   
| | | | | |   M	src/shogun/classifier/svm/NewtonSVM.cpp
| | | | | |         
* | | | | |   commit f13bc97b5afcc658335a0e2396ec869c3391692b
|\ \ \ \ \ \  Merge: c18de75 5a8b712
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Fri Apr 6 15:26:10 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #426 from iglesias/knn-covertree
| | | | | | |     
| | | | | | |     CoverTree integration for KNN
| | | | | | |        
| * | | | | | commit 5a8b712247066f04e35a9e2f3981c7f6604f5cef
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Fri Apr 6 22:57:43 2012 +0200
| | | | | | | 
| | | | | | |     * convention and naming fixes
| | | | | | | 
| | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | |          
| * | | | | |   commit aa21e1eb7b8883541c257c17d831f4cd11b8489f
| |\ \ \ \ \ \  Merge: 5cd946e 60462df
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 14:01:07 2012 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'knn-covertree' of github.com:iglesias/shogun into knn-covertree
| | | | | | | |         
| | * | | | | | commit 60462df5e05bbf62bbe824c08a373c421fe01762
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:50:26 2012 +0200
| | | | | | | | 
| | | | | | | |     + CoverTree integration in CKNN::classify_for_multiple_k()
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| | * | | | | | commit dce3fe8e1fa22f7379c0f5282b807f1ae9dbd460
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:34:10 2012 +0200
| | | | | | | | 
| | | | | | | |     + TODO for future work
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| | * | | | | | commit 8e41896a7c262bda34b8a500089a5d7fcd779c84
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:27:02 2012 +0200
| | | | | | | | 
| | | | | | | |     + better documentation
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |         
| | * | | | | | commit dfce8c722a8879feb41aa3cd11cfb24f7e126eb7
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:18:41 2012 +0200
| | | | | | | | 
| | | | | | | |     + operative integration of cover tree in KNN
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |         
| | * | | | | | commit 117128b9add3537c3ed5c7080f82addc791dbf65
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Apr 5 19:42:14 2012 +0200
| | | | | | | | 
| | | | | | | |     * minor indent fix in CoverTree
| | | | | | | | 
| | | | | | | | M	src/shogun/lib/CoverTree.h
| | | | | | | |         
| | * | | | | | commit 650c0ea3b47f8b9c319b66b75a1eb8528262a94c
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 22:51:22 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ faster max distance calculation
| | | | | | | | 
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | |         
| | * | | | | | commit c2a9c9c34e39821502c325219ff8983e983663c5
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 22:48:13 2012 +0200
| | | | | | | | 
| | | | | | | |     + class covertree_point and get neighborhood mat impl
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| | * | | | | | commit 675e89691a8b68758c25a43a9753d81190c1e3b8
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 21:41:58 2012 +0200
| | | | | | | | 
| | | | | | | |     + new KNN interface for CoverTree support
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |         
| * | | | | | | commit 5cd946e8abc6cf80360c911644106a7ad99bf075
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:50:26 2012 +0200
| | | | | | | | 
| | | | | | | |     + CoverTree integration in CKNN::classify_for_multiple_k()
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| * | | | | | | commit 96cdf7719462d5ae71712b0b5b3e8959da6cf903
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:34:10 2012 +0200
| | | | | | | | 
| | | | | | | |     + TODO for future work
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| * | | | | | | commit 834da179025e3572277f378f69c98dbc7a6338ba
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:27:02 2012 +0200
| | | | | | | | 
| | | | | | | |     + better documentation
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |         
| * | | | | | | commit bfcf8e0fd188323dbde2fdd01cfbc956de05c24d
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Fri Apr 6 08:18:41 2012 +0200
| | | | | | | | 
| | | | | | | |     + operative integration of cover tree in KNN
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |         
| * | | | | | | commit e162f5603dbfb24759c9d2dbe1160f7b856e2ac0
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Apr 5 19:42:14 2012 +0200
| | | | | | | | 
| | | | | | | |     * minor indent fix in CoverTree
| | | | | | | | 
| | | | | | | | M	src/shogun/lib/CoverTree.h
| | | | | | | |         
| * | | | | | | commit b1533f3ba37761e013940ff0c0ae8715967c9451
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 22:51:22 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ faster max distance calculation
| | | | | | | | 
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | |         
| * | | | | | | commit 7de5b9378fbdb192c29a857cb48b3ee6e07d01ae
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 22:48:13 2012 +0200
| | | | | | | | 
| | | | | | | |     + class covertree_point and get neighborhood mat impl
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | |         
| * | | | | | | commit 07747f12671eb67bceb27f949c4d0e887e4aaf7b
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Wed Apr 4 21:41:58 2012 +0200
| | | | | | | | 
| | | | | | | |     + new KNN interface for CoverTree support
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/KNN.cpp
| | | | | | | | M	src/shogun/classifier/KNN.h
| | | | | | | |           
* | | | | | | |   commit c18de751fba62cc3e198da3f281e7757b8a9a2df
|\ \ \ \ \ \ \ \  Merge: da35d2a fdc84e5
| |/ / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | |   Date:   Fri Apr 6 12:39:03 2012 -0700
| | | | | | | |   
| | | | | | | |       Merge pull request #427 from gsomix/python3_interface
| | | | | | | |       
| | | | | | | |       Convert python examples to be python3 compatible
| | | | | | | |         
| * | | | | | | commit fdc84e5e2978bc971b539ba37a4a32ff8f09b715
| | | | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | | | Date:   Fri Apr 6 18:04:25 2012 +0400
| | | | | | | | 
| | | | | | | |     fixed examples and removed 'xrange' from class_list.cpp.py
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_conjugateindex_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_lda_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| | | | | | | | M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_isomap_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| | | | | | | | M	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_braycurtis_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_canberra_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_chebyshew_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_chisquare_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_cosine_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_euclidian_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_geodesic_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_jensen_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_mahalanobis_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_manhatten_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_minkowski_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_normsquared_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_tanimoto_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distribution_histogram_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distribution_hmm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distribution_linearhmm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_binned_dot_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_io_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_simple_byte_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_simple_longint_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_simple_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_simple_real_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_snp_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_sparse_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_char_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_file_char_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_file_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_ulong_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_word_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_auc_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_cauchy_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_chi2_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_circular_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_combined_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_const_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_custom_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_diag_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_director_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_distance_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_distantsegments_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_exponential_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_fisher_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_inversemultiquadric_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_io_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_linear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_log_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_multiquadric_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_poly_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_power_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_rationalquadratic_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_spherical_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_spline_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_top_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_tstudent_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_wave_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_wavelet_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | | | | | | | M	examples/undocumented/python_modular/library_time.py
| | | | | | | | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | | | | | | | M	examples/undocumented/python_modular/modelselection_grid_search_krr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/modelselection_grid_search_liblinear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_kernelpca_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_normone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_pca_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_randomfouriergausspreproc_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_kernel_ridge_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_least_squares_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_libsvr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_linear_ridge_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | | | | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | | | | | M	examples/undocumented/python_modular/serialization_matrix_modular.py
| | | | | | | | M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| | | | | | | | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| | | | | | | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | | | | | | M	src/shogun/base/class_list.cpp.py
| | | | | | | |         
| * | | | | | | commit a24289cb2d92f4367843243de949d06a8b31b672
|/ / / / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | |   Date:   Fri Apr 6 16:24:16 2012 +0400
| | | | | | |   
| | | | | | |       fixed stupid bug with 'if' statement
| | | | | | |   
| | | | | | |   M	src/interfaces/python_modular/swig_typemaps.i
| | | | | | |          
* | | | | | |   commit da35d2a3f36f90f9a3fda26010497e28d74ca016
|\ \ \ \ \ \ \  Merge: 74820b2 fbb28a2
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu Apr 5 14:18:53 2012 -0700
| | | | | | | | 
| | | | | | | |     Merge pull request #423 from gsomix/python3_interface
| | | | | | | |     
| | | | | | | |     Updates on python3 interface
| | | | | | | |         
| * | | | | | | commit fbb28a2eb17fa3812f0a922da38065b49d29898f
| | | | | | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | | | Date:   Fri Apr 6 00:34:36 2012 +0400
| | | | | | | | 
| | | | | | | |     unicode -> const char* and fixed typemaps for int32 support
| | | | | | | | 
| | | | | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit cc0fd28ccdb676b69df9acdf637c7180caf75d92
|/ / / / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | |   Date:   Thu Apr 5 20:42:30 2012 +0400
| | | | | | |   
| | | | | | |       fixed pickle serialization
| | | | | | |   
| | | | | | |   M	src/interfaces/modular/SGBase.i
| | | | | | |          
* | | | | | |   commit 74820b2dc0fbe5a5b778e6e1248d770a8e6fbea2
|\ \ \ \ \ \ \  Merge: 29f4059 df76789
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu Apr 5 06:36:47 2012 -0700
| | | | | | | | 
| | | | | | | |     Merge pull request #421 from harshitsyal/master
| | | | | | | |     
| | | | | | | |     Newton SVM : improve documentation
| | | | | | | |         
| * | | | | | | commit df76789fb50db931b6e8b5bfeef1591fdbf4af02
| | | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | | Date:   Thu Apr 5 18:58:16 2012 +0530
| | | | | | | | 
| | | | | | | |     Removed some typo
| | | | | | | | 
| | | | | | | | M	src/shogun/classifier/svm/NewtonSVM.h
| | | | | | | |         
| * | | | | | | commit 518b92355da60db136aa57ed8878c3ef159febd2
|/ / / / / / /  Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | |   Date:   Thu Apr 5 18:24:03 2012 +0530
| | | | | | |   
| | | | | | |       Added brief intro to NewtonSVM and added octave_modular example
| | | | | | |   
| | | | | | |   A	examples/undocumented/octave_modular/classifier_newtonsvm_modular.m
| | | | | | |   M	src/shogun/classifier/svm/NewtonSVM.h
| | | | | | |          
* | | | | | |   commit 29f40595cc430e8e940334979eab611fecf1e823
|\ \ \ \ \ \ \  Merge: 7a9d7d0 4658048
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu Apr 5 00:23:38 2012 -0700
| | | | | | | | 
| | | | | | | |     Merge pull request #420 from pluskid/normalized-mutual-info
| | | | | | | |     
| | | | | | | |     Normalized mutual information
| | | | | | | |         
| * | | | | | | commit 4658048e4e557f68aea0a55599e55b82a8f5cfb9
| | | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | | Date:   Thu Apr 5 15:18:37 2012 +0800
| | | | | | | | 
| | | | | | | |     Use the built-in get_unique_labels instead of wrting a new function.
| | | | | | | | 
| | | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.h
| | | | | | | | M	src/shogun/evaluation/ClusteringMutualInformation.cpp
| | | | | | | |         
| * | | | | | | commit 3d81e4f3a7bd70d9b8ad721f84c60a266c1f1f39
| | | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | | Date:   Thu Apr 5 13:04:32 2012 +0800
| | | | | | | | 
| | | | | | | |     Refine the code according to coding convention.
| | | | | | | | 
| | | | | | | | A	src/shogun/evaluation/ClusteringAccuracy.cpp
| | | | | | | | M	src/shogun/evaluation/ClusteringAccuracy.h
| | | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.h
| | | | | | | | A	src/shogun/evaluation/ClusteringMutualInformation.cpp
| | | | | | | | M	src/shogun/evaluation/ClusteringMutualInformation.h
| | | | | | | |         
| * | | | | | | commit 906af841bfc2ea7ffa8597ed052bff63b30a62c1
| | | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | | Date:   Wed Apr 4 23:18:37 2012 +0800
| | | | | | | | 
| | | | | | | |     Remove debug code.
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | | | | | |         
| * | | | | | | commit 446f7fadce4a0ce1d8e75a63ef2c30561bc958d4
|/ / / / / / /  Author: pluskid <pluskid@gmail.com>
| | | | | | |   Date:   Wed Apr 4 23:13:42 2012 +0800
| | | | | | |   
| | | | | | |       Added normalized mutual information evaluation for clustering.
| | | | | | |   
| | | | | | |   M	examples/undocumented/python_modular/evaluation_clustering.py
| | | | | | |   M	src/interfaces/modular/Evaluation.i
| | | | | | |   M	src/interfaces/modular/Evaluation_includes.i
| | | | | | |   M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | | | |   M	src/shogun/evaluation/ClusteringEvaluation.h
| | | | | | |   A	src/shogun/evaluation/ClusteringMutualInformation.h
| | | | | | |        
* | | | | | | commit 7a9d7d096cc3d9b8e777e023eda7b103bd177dd2
|/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Wed Apr 4 20:23:41 2012 +0200
| | | | | |   
| | | | | |       fix a couple of clang related warnings (which infact were errors)
| | | | | |   
| | | | | |   M	src/configure
| | | | | |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | |   M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | | |   M	src/shogun/lib/CoverTree.h
| | | | | |   M	src/shogun/machine/Machine.h
| | | | | |         
* | | | | |   commit c5d7f7f9d39eaa3d556e537647b5648c733840d9
|\ \ \ \ \ \  Merge: c6669b4 c695388
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Wed Apr 4 04:01:58 2012 +0400
| | | | | | | 
| | | | | | |     Merge branch 'dr-spe' of git://github.com/iglesias/shogun
| | | | | | |        
| * | | | | | commit c69538859d7cc79cca665fd41573ad1a2bbb0f50
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Wed Apr 4 00:56:20 2012 +0200
| | | | | | | 
| | | | | | |     + SPE documentation
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |        
| * | | | | | commit 2f6dea27f581b3dee5423177a60b054cf88fbfbd
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Tue Apr 3 03:12:07 2012 +0200
| | | | | | | 
| | | | | | |     ~ avoid dealing with the full distance matrix in memory, use CDistance instead
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |          
| * | | | | |   commit ec43ed19069dcf718d09d70207ced66b968d6baa
| |\ \ \ \ \ \  Merge: 313ecdd a197857
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Mon Apr 2 14:25:03 2012 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'dr-spe' of github.com:iglesias/shogun into dr-spe
| | | | | | | |     
| | | | | | | |     Conflicts:
| | | | | | | |     	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | |     	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | | |         
| | * | | | | | commit a1978575d8bb5f7689903bba22f8f60068a989c0
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Mon Apr 2 00:29:24 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ LLE_COVERTREE_POINT -> SPE_COVERTREE_POINT
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| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | |         
| | * | | | | | commit 6e73405de5ac0679f690710de81bedf260434aba
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Sun Apr 1 23:48:50 2012 +0200
| | | | | | | | 
| | | | | | | |     + spe graphical example
| | | | | | | | 
| | | | | | | | A	examples/undocumented/python_modular/graphical/converter_spe_helix.py
| | | | | | | |         
| | * | | | | | commit c6df47f0dd1240b0275eacd93e2d74b13cc39fec
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Sun Apr 1 23:24:23 2012 +0200
| | | | | | | | 
| | | | | | | |     * fix memory leak in SPE, + basic C++ and python examples
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | | A	examples/undocumented/libshogun/converter_stochasticproximityembedding.cpp
| | | | | | | | A	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | |         
| | * | | | | | commit 9ee640d821f1bec3eae9b9d090377e9531c24e05
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Sun Apr 1 23:03:43 2012 +0200
| | | | | | | | 
| | | | | | | |     * fixes in SEP, + SEP in interfaces, * typo in Math
| | | | | | | | 
| | | | | | | | M	src/interfaces/modular/Converter.i
| | | | | | | | M	src/interfaces/modular/Converter_includes.i
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | | |         
| | * | | | | | commit 02b0421100e13d94a8c0b5120219721a43e0cc43
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Sun Apr 1 14:37:08 2012 +0200
| | | | | | | | 
| | | | | | | |     + SPE apply, good results in helix, pending to be cleant
| | | | | | | | 
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | | |         
| | * | | | | | commit e3ba30cbe6d4480205f0293e3d351ebb19190b40
| | | |_|_|/ /  Author: iglesias <fernando.iglesiasg@gmail.com>
| | |/| | | |   Date:   Sat Mar 31 22:35:17 2012 +0200
| | | | | | |   
| | | | | | |       + SPE first version, apply not implemented
| | | | | | |   
| | | | | | |   A	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | |   A	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |        
| * | | | | | commit 313ecdd1b014d70f8800e37b975a2eec43a5d1a8
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Mon Apr 2 14:04:23 2012 +0200
| | | | | | | 
| | | | | | |     ~ most of the work in apply separated to embed_distance
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |        
| * | | | | | commit 3bdbcae8425c4a047f259774920d9b291aa988e9
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Mon Apr 2 12:55:11 2012 +0200
| | | | | | | 
| | | | | | |     - check for simple and real features in SPE -> distance makes the check
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | |        
| * | | | | | commit 478296e79993ed6069a2bc31b7b26467153ce682
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Mon Apr 2 00:29:24 2012 +0200
| | | | | | | 
| | | | | | |     ~ LLE_COVERTREE_POINT -> SPE_COVERTREE_POINT
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | |        
| * | | | | | commit 9b779c746a2bf56fdd704eacd2b42e6edd71f199
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sun Apr 1 23:48:50 2012 +0200
| | | | | | | 
| | | | | | |     + spe graphical example
| | | | | | | 
| | | | | | | A	examples/undocumented/python_modular/graphical/converter_spe_helix.py
| | | | | | |        
| * | | | | | commit 91db583d7b9219d78a0d31a02f7b510acedfd937
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sun Apr 1 23:24:23 2012 +0200
| | | | | | | 
| | | | | | |     * fix memory leak in SPE, + basic C++ and python examples
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | A	examples/undocumented/libshogun/converter_stochasticproximityembedding.cpp
| | | | | | | A	examples/undocumented/python_modular/converter_stochasticproximityembedding_modular.py
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | |        
| * | | | | | commit 322f30b75e341ef69346092710060e9a5f1a71fc
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sun Apr 1 23:03:43 2012 +0200
| | | | | | | 
| | | | | | |     * fixes in SEP, + SEP in interfaces, * typo in Math
| | | | | | | 
| | | | | | | M	src/interfaces/modular/Converter.i
| | | | | | | M	src/interfaces/modular/Converter_includes.i
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | |        
| * | | | | | commit 92833bcf7ce1842f289e0b0f4e5beccfb7bfe6f2
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sun Apr 1 14:37:08 2012 +0200
| | | | | | | 
| | | | | | |     + SPE apply, good results in helix, pending to be cleant
| | | | | | | 
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | M	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |        
| * | | | | | commit 7a164319922f0f12240d6edb27b10f2047f25d15
| | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | Date:   Sat Mar 31 22:35:17 2012 +0200
| | | | | | | 
| | | | | | |     + SPE first version, apply not implemented
| | | | | | | 
| | | | | | | A	src/shogun/converter/StochasticProximityEmbedding.cpp
| | | | | | | A	src/shogun/converter/StochasticProximityEmbedding.h
| | | | | | |        
* | | | | | | commit c6669b4fb6cae3442b4c7df532b462321f6ac6dd
| |_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Tue Apr 3 23:30:41 2012 +0200
| | | | | |   
| | | | | |       add ifdef HAVE_LAPACK for NewtonSVM
| | | | | |   
| | | | | |   M	src/shogun/classifier/svm/NewtonSVM.h
| | | | | |       
* | | | | | commit 0176afbe6bef13ffccfdb521905461e80c6f2776
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Tue Apr 3 23:14:08 2012 +0400
| | | | | | 
| | | | | |     Added note about lapack performance with diffusion maps #418
| | | | | | 
| | | | | | M	src/shogun/converter/DiffusionMaps.h
| | | | | |         
* | | | | |   commit 51c636ad985d28249876c83472b045a440938caa
|\ \ \ \ \ \  Merge: ec51f8d 7fc9f30
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Tue Apr 3 12:07:36 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #417 from karlnapf/master
| | | | | | |     
| | | | | | |     new example
| | | | | | |        
| * | | | | | commit 7fc9f309d521b919f32385320d5363a5fea9eb9c
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Tue Apr 3 20:05:33 2012 +0100
| | | | | | | 
| | | | | | |     fixed copyright and excluded TUB
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | | | | | |        
| * | | | | | commit c2b0d0676a891fff1aee38b0d538edabf7c79c56
|/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Tue Apr 3 20:00:10 2012 +0100
| | | | | |   
| | | | | |       added example for modelselection of different kernels
| | | | | |   
| | | | | |   A	examples/undocumented/python_modular/modelselection_grid_search_kernel.py
| | | | | |       
* | | | | | commit ec51f8d2e8ff11f378282ef9b8b69ccb8a6094f8
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Apr 3 19:51:35 2012 +0200
| | | | | | 
| | | | | |     whitespace and coding style fixed in newtonsvm
| | | | | | 
| | | | | | M	src/shogun/classifier/svm/NewtonSVM.cpp
| | | | | | M	src/shogun/classifier/svm/NewtonSVM.h
| | | | | |         
* | | | | |   commit 3f1c591d0aa85e79188b484884e380ae51312c1a
|\ \ \ \ \ \  Merge: e4acb13 8da9861
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 3 08:09:53 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #409 from harshitsyal/master
| | | | | | |     
| | | | | | |     Newton SVM
| | | | | | |        
| * | | | | | commit 8da98614a50b5f392d306f7edc8f93298f8ed612
| | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | Date:   Tue Apr 3 18:27:34 2012 +0530
| | | | | | | 
| | | | | | |     removed unwanted SG_SPRINT
| | | | | | | 
| | | | | | | M	src/shogun/classifier/svm/NewtonSVM.cpp
| | | | | | |        
| * | | | | | commit e7172c6255fb9a09b13b999cdc8af0f4b0c596af
| | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | Date:   Tue Apr 3 13:29:52 2012 +0530
| | | | | | | 
| | | | | | |     Made some indentation and witespace changes
| | | | | | | 
| | | | | | | M	src/shogun/classifier/svm/NewtonSVM.cpp
| | | | | | | M	src/shogun/classifier/svm/NewtonSVM.h
| | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | |        
| * | | | | | commit e94edaf588625d2488644c8ba0210992263d6d62
| | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | Date:   Sun Apr 1 19:39:58 2012 +0530
| | | | | | | 
| | | | | | |     Added example for newtonSVM
| | | | | | | 
| | | | | | | A	examples/undocumented/libshogun/classifier_newtontest.cpp
| | | | | | |          
| * | | | | |   commit 7341fdc8f1fc82653ccb20898606afa3dc3fae0f
| |\ \ \ \ \ \  Merge: e8853a5 3fc3998
| | | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | | Date:   Sun Apr 1 19:31:42 2012 +0530
| | | | | | | | 
| | | | | | | |     Merge branch 'NewtonSVM'
| | | | | | | |         
| | * | | | | | commit 3fc3998bbd82857f63ef4ae71255166a51b641eb
| | | | | | | | Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | | | Date:   Sun Apr 1 19:26:38 2012 +0530
| | | | | | | | 
| | | | | | | |     Resolved Commits
| | | | | | | | 
| | | | | | | | M	src/interfaces/modular/Classifier.i
| | | | | | | | M	src/interfaces/modular/Classifier_includes.i
| | | | | | | | M	src/shogun/machine/Machine.h
| | | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | | |         
| * | | | | | | commit e8853a5dd859771aed9c9dd535d3e42ee1eba5ae
| |/ / / / / /  Author: Harshit Syal <harshit.syal@nsitonline.in>
| | | | | | |   Date:   Sun Apr 1 19:30:01 2012 +0530
| | | | | | |   
| | | | | | |       Added Newton SVM files
| | | | | | |   
| | | | | | |   A	src/shogun/classifier/svm/NewtonSVM.cpp
| | | | | | |   A	src/shogun/classifier/svm/NewtonSVM.h
| | | | | | |          
* | | | | | |   commit e4acb138e23cd38f3f49e1089c5dbd44c002761f
|\ \ \ \ \ \ \  Merge: 5994eb8 57f7d32
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 3 05:30:39 2012 -0700
| | | | | | | | 
| | | | | | | |     Merge pull request #415 from iglesias/fix-modelsel
| | | | | | | |     
| | | | | | | |     Small fix to avoid seg fault
| | | | | | | |         
| * | | | | | | commit 57f7d32f2f54364792a525e916a5d206bdee956c
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Tue Apr 3 13:46:19 2012 +0200
| | | | | | | | 
| | | | | | | |     * fix seg fault when trying to do CV with no kernel initialized, * fix indent
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | | | |           
* | | | | | | |   commit 5994eb8a756e52466d87dcfd76956f3d32dd720c
|\ \ \ \ \ \ \ \  Merge: 8aa81bc 0815470
| |/ / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | |   Date:   Mon Apr 2 23:10:38 2012 -0700
| | | | | | | |   
| | | | | | | |       Merge pull request #413 from karlnapf/master
| | | | | | | |       
| | | | | | | |       small SG_ADD type cast fix
| | | | | | | |         
| * | | | | | | commit 08154705b6e5b48e3c412e195c94330d52bae523
|/ / / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Mon Apr 2 23:15:14 2012 +0100
| | | | | | |   
| | | | | | |       small cast fix
| | | | | | |   
| | | | | | |   M	src/shogun/features/Subset.cpp
| | | | | | |        
* | | | | | | commit 8aa81bc7c0ac6e400da6ecee762d57686cb43d73
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 2 21:39:51 2012 +0200
| | | | | | | 
| | | | | | |     add try catch around len()
| | | | | | | 
| | | | | | | M	testsuite/python_modular/tester.py
| | | | | | |        
* | | | | | | commit 39a63cbd539c46e83173db6ba50d4156a9961735
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 2 22:43:57 2012 +0400
| | | | | | | 
| | | | | | |     Warnings removal
| | | | | | | 
| | | | | | | M	src/shogun/base/Parameter.h
| | | | | | | M	src/shogun/evaluation/ClusteringAccuracy.h
| | | | | | | M	src/shogun/mathematics/munkres.h
| | | | | | |        
* | | | | | | commit f68e2131117676c985f8f84e5bd938ad6f0beb86
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 2 19:28:47 2012 +0200
| | | | | | | 
| | | | | | |     rename index i to c to fix clash with csharp typemap
| | | | | | | 
| | | | | | | M	src/shogun/classifier/QDA.h
| | | | | | |        
* | | | | | | commit dc4b99e103716748c27fd37f9f7c6932ca367180
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 2 18:54:33 2012 +0200
| | | | | | | 
| | | | | | |     rename function to match file name
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | |        
* | | | | | | commit 8e98c525f8c9453171bdbf6173444b679eb52a8d
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Mon Apr 2 18:54:18 2012 +0200
| | | | | |   
| | | | | |       remove pdb import from tester
| | | | | |   
| | | | | |   M	testsuite/python_modular/tester.py
| | | | | |         
* | | | | |   commit 82e622b1c4ed0f02db3cbcac3433b06f92a30b0a
|\ \ \ \ \ \  Merge: 8f258ac 8b91104
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sun Apr 1 23:17:51 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #411 from shelhamer/readme-whitespace-and-versioning
| | | | | | |     
| | | | | | |     Developer Readme whitespace and versioning
| | | | | | |        
| * | | | | | commit 8b91104b1e8dbd5ad13ce9a5908a63949ae7ce24
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Sun Apr 1 23:28:39 2012 -0400
| | | | | | | 
| | | | | | |     Revise whitespace and versioning scheme sections of the developer readme
| | | | | | |     
| | | | | | |     - include notice of newline convention (LF) and how to enforce it automatically
| | | | | | |       through git settings
| | | | | | |     - rephrase trailing whitespace caution and suggest means to automatically
| | | | | | |       strip trailing whitespace for emacs and vim
| | | | | | |     - update versioning section with info on github and suggested workflow
| | | | | | |       posted to mailing list by Sergey Lisitsyn
| | | | | | | 
| | | | | | | M	src/README.developer
| | | | | | |        
| * | | | | | commit b39f33116fb5d3b4962f11fc95a4dd935a35a0c9
|/ / / / / /  Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | |   Date:   Sun Apr 1 23:26:20 2012 -0400
| | | | | |   
| | | | | |       Cleanup doc whitespace and word wrap
| | | | | |   
| | | | | |   M	src/README.developer
| | | | | |       
* | | | | | commit 8f258ac3d82278de0a23ba35e2760ef109598c45
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Apr 2 02:38:28 2012 +0400
| | | | | | 
| | | | | |     Fixes for SG_ADD conversion
| | | | | | 
| | | | | | M	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | |       
* | | | | | commit 9a56e45246a41c090678bf3cf7a0d39fb1ee343a
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri Mar 30 01:36:37 2012 +0200
| | | | | | 
| | | | | |     add -m option to tester to show only missing tests
| | | | | | 
| | | | | | M	testsuite/python_modular/tester.py
| | | | | |         
* | | | | |   commit 20e328d1fd141ea6382868ee4c408716f789420c
|\ \ \ \ \ \  Merge: 7f83835 fa24975
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sun Apr 1 14:44:08 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #402 from shelhamer/add-param-macro
| | | | | | |     
| | | | | | |     Convert parameter assignments to SG_ADD macro
| | | | | | |        
| * | | | | | commit fa249752a8d6e4c641da5280c28279182095f81b
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Sun Apr 1 14:39:45 2012 -0400
| | | | | | | 
| | | | | | |     Fix SG_ADD typos (missing commas)
| | | | | | | 
| | | | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | |        
| * | | | | | commit 2a4165cc77c7e1eb85283f55f9c4b556dc259b9d
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Sun Apr 1 14:34:43 2012 -0400
| | | | | | | 
| | | | | | |     Mark model selection params for kernel normalizers
| | | | | | | 
| | | | | | | M	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/FirstElementKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/KernelNormalizer.h
| | | | | | | M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | M	src/shogun/kernel/RidgeKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/VarianceKernelNormalizer.h
| | | | | | |        
| * | | | | | commit 4a2b5f0a2e2e7bfd628405c96d6bc7167c262180
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Sun Apr 1 14:29:02 2012 -0400
| | | | | | | 
| | | | | | |     Finish adapting kernel params to SG_ADD
| | | | | | | 
| | | | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | | |        
| * | | | | | commit a1e5d47957677f4524bbcbe99253da6bf3bee129
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Sun Apr 1 14:17:28 2012 -0400
| | | | | | | 
| | | | | | |     Adapt more kernel, preproc params to SG_ADD
| | | | | | | 
| | | | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | | | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | | | |        
| * | | | | | commit 1546f7f16eaf51edbae033e65501c9ffd20d2c5c
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 16:46:30 2012 -0400
| | | | | | | 
| | | | | | |     Mark distances and kernels for model selection
| | | | | | | 
| | | | | | | M	src/shogun/converter/EmbeddingConverter.cpp
| | | | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | | | | |        
| * | | | | | commit e7fba92b267c6e882008fdecd96b2681a5d55498
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 12:24:38 2012 -0400
| | | | | | | 
| | | | | | |     Fix forgotten SG_ADD in base Kernel
| | | | | | | 
| | | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | | |        
| * | | | | | commit a3d6ecc877063c6b3317293109e128fbaa0f71a1
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Thu Mar 29 22:02:11 2012 -0400
| | | | | | | 
| | | | | | |     Mark machine params not for model selection
| | | | | | | 
| | | | | | | M	src/shogun/machine/LinearMachine.cpp
| | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | | | | |        
| * | | | | | commit 7ef08ebf95e30b2d8fd4e4726cf25c8a5f411030
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 16:16:26 2012 -0400
| | | | | | | 
| | | | | | |     Mark model selection params for converters
| | | | | | | 
| | | | | | | M	src/shogun/converter/DiffusionMaps.cpp
| | | | | | | M	src/shogun/converter/EmbeddingConverter.cpp
| | | | | | | M	src/shogun/converter/Isomap.cpp
| | | | | | | M	src/shogun/converter/LaplacianEigenmaps.cpp
| | | | | | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | | | | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | | | | |        
| * | | | | | commit 1c5e0eaa588e9bdca66c547a8ec0042582e8b16a
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Thu Mar 29 21:53:13 2012 -0400
| | | | | | | 
| | | | | | |     Mark model selection params for kmeans
| | | | | | | 
| | | | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | | |        
| * | | | | | commit d5293daed4777e19d2ff0cb08f7b0ddc1317d93d
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 16:15:51 2012 -0400
| | | | | | | 
| | | | | | |     Mark model selection params w/ SG_ADD for preprocessing
| | | | | | | 
| | | | | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | | | | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | | | |        
| * | | | | | commit 6c7815bb67087fccc66a8072a6be4200f0a599ae
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Thu Mar 29 21:28:46 2012 -0400
| | | | | | | 
| | | | | | |     Exclude base kernel properties + inhomogeneity from model selection w/ SG_ADD
| | | | | | | 
| | | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | | |        
| * | | | | | commit 1f513ac9a07a2c73c7de901d63abab2085752a6c
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 16:13:58 2012 -0400
| | | | | | | 
| | | | | | |     Add kernel params for model selection w/ SG_ADD
| | | | | | |     
| | | | | | |     Replace calls to m_parameters->add() with SG_ADD macro. Replacement done for
| | | | | | |     kernel params that should be available for model selection.
| | | | | | | 
| | | | | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | | | | M	src/shogun/kernel/OligoStringKernel.cpp
| | | | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SigmoidKernel.cpp
| | | | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | | | | M	src/shogun/kernel/WaveletKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | | |        
* | | | | | | commit 7f838357a3e5e2296b904d83047f512b1bed76ca
|/ / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | |   Date:   Mon Apr 2 01:00:00 2012 +0400
| | | | | |   
| | | | | |       Restored sdot at float32_t dot
| | | | | |   
| | | | | |   M	src/shogun/mathematics/Math.cpp
| | | | | |       
* | | | | | commit 5c32bff860880573db18d5683b9ded3fa2e52976
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 1 19:49:39 2012 +0400
| | | | | | 
| | | | | |     Added getter for support vector indices for MC liblinear
| | | | | | 
| | | | | | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | | | | | M	src/shogun/multiclass/MulticlassLibLinear.h
| | | | | |       
* | | | | | commit 51707d53df505c607ac3f2de305fcda675c456f7
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 1 19:42:54 2012 +0400
| | | | | | 
| | | | | |     Removed warnings
| | | | | | 
| | | | | | M	src/shogun/mathematics/munkres.cpp
| | | | | |       
* | | | | | commit 90a7700ef6ff7d015e98c00757ee0c491b036213
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 1 19:42:33 2012 +0400
| | | | | | 
| | | | | |     Fixes precision issue fix
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | |         
* | | | | |   commit 6f4ba219ae737b02d6e35560dfeb3eede4031aaa
|\ \ \ \ \ \  Merge: fb3f134 582d702
| |/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | |   Date:   Sun Apr 1 19:21:42 2012 +0400
| | | | | |   
| | | | | |       Merge branch 'master' of git://github.com/PhilippeTillet/shogun
| | | | | |       
| * | | | | commit 582d702dda0b9e704c2311b5f09037d8a3e3f495
| | | | | | Author: Philippe Tillet <Phil.Tillet@gmail.com>
| | | | | | Date:   Sun Apr 1 04:30:32 2012 -0400
| | | | | | 
| | | | | |     Bugfix in dot product for 32bit,32bit vector dot product computation
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | |         
* | | | | |   commit fb3f134cee9bf8362c14e7fc3a07cba966608337
|\ \ \ \ \ \  Merge: b5a7c79 a1d5461
| |/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | |   Date:   Sun Apr 1 11:21:36 2012 +0400
| | | | | |   
| | | | | |       Merge branch 'gsoc-pullrequest-1' of git://github.com/pluskid/shogun
| | | | | |         
| * | | | |   commit a1d5461bd21226ccb18c735f034a5c71a7a0e859
| |\ \ \ \ \  Merge: 330e72f 8f7dc4e
| | | | | | | Author: Chiyuan Zhang <pluskid@gmail.com>
| | | | | | | Date:   Sat Mar 31 17:42:00 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #1 from pluskid/master
| | | | | | |     
| | | | | | |     bug fix for CLabels::set_int_labels
| | | | | | |        
| | * | | | | commit 8f7dc4e8c07f444a5aa4f3f076d3ad21e13e9c5a
| |/ / / / /  Author: pluskid <pluskid@gmail.com>
| | | | | |   Date:   Sat Mar 31 15:02:53 2012 +0800
| | | | | |   
| | | | | |       bug fix: wrong implementation of CLabel::set_int_labels
| | | | | |   
| | | | | |   M	src/shogun/features/Labels.cpp
| | | | | |         
* | | | | |   commit b5a7c79e4bfe96db91886b98ae3cd362dea15915
|\ \ \ \ \ \  Merge: cac2a88 330e72f
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | / / / /   Date:   Sat Mar 31 16:47:23 2012 -0700
| |/ / / /    
|/| | | |         Merge pull request #405 from pluskid/gsoc-pullrequest-1
| | | | |         
| | | | |         Accuracy Evaluation for Clustering
| | | | |      
| * | | | commit 330e72f7cea5e60efb5240f142e9724ed39697b2
| | | | | Author: pluskid <pluskid@gmail.com>
| | | | | Date:   Sat Mar 31 14:53:24 2012 +0800
| | | | | 
| | | | |     A stupid typo.
| | | | | 
| | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | |      
| * | | | commit ee10081cd9b3544440d74d0af2e46b60dcd4361a
| | | | | Author: pluskid <pluskid@gmail.com>
| | | | | Date:   Sat Mar 31 14:35:38 2012 +0800
| | | | | 
| | | | |     Tiny modification for coding convention.
| | | | | 
| | | | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | | | M	src/shogun/evaluation/ClusteringAccuracy.h
| | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | |        
| * | | |   commit 5c2c9baa24434904ea1ac65a1370872b336fba96
| |\ \ \ \  Merge: 104f9bf 9fbd768
| | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | Date:   Sat Mar 31 14:03:48 2012 +0800
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:pluskid/shogun
| | | | | |         
| | * | | |   commit 9fbd768ff948eb2fa722cd5e3c9ea847e24ded8e
| | |\ \ \ \  Merge: 3e7a74b cac2a88
| |_|/ / / /  Author: pluskid <pluskid@gmail.com>
|/| | | | |   Date:   Sat Mar 31 11:20:29 2012 +0800
| | | | | |   
| | | | | |       Merge remote-tracking branch 'upstream/master'
| | | | | |         
* | | | | |   commit cac2a885cf592de83bd55b9b8dd8875ba33699e7
|\ \ \ \ \ \  Merge: 3067e32 03bd139
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Fri Mar 30 14:18:10 2012 -0700
| | | | | | | 
| | | | | | |     Merge pull request #404 from shelhamer/whitespace-cleanup
| | | | | | |     
| | | | | | |     Trailing whitespace cleanup
| | | | | | |        
| * | | | | | commit 03bd1390f4d733a29c3d41a9b91ef8eeccc1a7a3
| | | | | | | Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| | | | | | | Date:   Fri Mar 30 16:11:43 2012 -0400
| | | | | | | 
| | | | | | |     Trailing whitespace cleanup
| | | | | | | 
| | | | | | | M	src/shogun/base/DynArray.h
| | | | | | | M	src/shogun/base/Parallel.h
| | | | | | | M	src/shogun/base/Parameter.h
| | | | | | | M	src/shogun/base/Version.cpp
| | | | | | | M	src/shogun/base/Version.h
| | | | | | | M	src/shogun/classifier/ConjugateIndex.cpp
| | | | | | | M	src/shogun/classifier/ConjugateIndex.h
| | | | | | | M	src/shogun/classifier/LDA.cpp
| | | | | | | M	src/shogun/classifier/LPBoost.cpp
| | | | | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | | | | M	src/shogun/classifier/PluginEstimate.h
| | | | | | | M	src/shogun/classifier/QDA.cpp
| | | | | | | M	src/shogun/classifier/QDA.h
| | | | | | | M	src/shogun/classifier/SubGradientLPM.cpp
| | | | | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | | | | M	src/shogun/classifier/mkl/MKL.h
| | | | | | | M	src/shogun/classifier/mkl/MKLClassification.h
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | | | | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | | | | | | M	src/shogun/classifier/mkl/MKLOneClass.h
| | | | | | | M	src/shogun/classifier/svm/GMNPLib.cpp
| | | | | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | | | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | | | | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | | | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | | | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | | | | | M	src/shogun/classifier/svm/SVM_linear.h
| | | | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | | | | | M	src/shogun/classifier/svm/gpdt.cpp
| | | | | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | | | | M	src/shogun/classifier/svm/gpm.h
| | | | | | | M	src/shogun/classifier/svm/libocas.cpp
| | | | | | | M	src/shogun/classifier/svm/libocas.h
| | | | | | | M	src/shogun/classifier/svm/libqp.h
| | | | | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | | | | M	src/shogun/classifier/svm/pr_loqo.h
| | | | | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | | | | M	src/shogun/classifier/svm/ssl.h
| | | | | | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | | | | | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| | | | | | | M	src/shogun/clustering/GMM.cpp
| | | | | | | M	src/shogun/clustering/GMM.h
| | | | | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | | | M	src/shogun/clustering/KMeans.h
| | | | | | | M	src/shogun/converter/Converter.h
| | | | | | | M	src/shogun/converter/DiffusionMaps.cpp
| | | | | | | M	src/shogun/converter/DiffusionMaps.h
| | | | | | | M	src/shogun/converter/EmbeddingConverter.cpp
| | | | | | | M	src/shogun/converter/EmbeddingConverter.h
| | | | | | | M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| | | | | | | M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| | | | | | | M	src/shogun/converter/Isomap.cpp
| | | | | | | M	src/shogun/converter/Isomap.h
| | | | | | | M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| | | | | | | M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| | | | | | | M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| | | | | | | M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| | | | | | | M	src/shogun/converter/LaplacianEigenmaps.cpp
| | | | | | | M	src/shogun/converter/LaplacianEigenmaps.h
| | | | | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| | | | | | | M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| | | | | | | M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| | | | | | | M	src/shogun/converter/LocalTangentSpaceAlignment.h
| | | | | | | M	src/shogun/converter/LocalityPreservingProjections.cpp
| | | | | | | M	src/shogun/converter/LocalityPreservingProjections.h
| | | | | | | M	src/shogun/converter/LocallyLinearEmbedding.cpp
| | | | | | | M	src/shogun/converter/LocallyLinearEmbedding.h
| | | | | | | M	src/shogun/converter/MultidimensionalScaling.cpp
| | | | | | | M	src/shogun/converter/MultidimensionalScaling.h
| | | | | | | M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| | | | | | | M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
| | | | | | | M	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.cpp
| | | | | | | M	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.h
| | | | | | | M	src/shogun/distance/AttenuatedEuclidianDistance.h
| | | | | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | | | | M	src/shogun/distance/BrayCurtisDistance.h
| | | | | | | M	src/shogun/distance/CanberraMetric.h
| | | | | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | | | | M	src/shogun/distance/ChebyshewMetric.h
| | | | | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | | | | M	src/shogun/distance/ChiSquareDistance.h
| | | | | | | M	src/shogun/distance/CosineDistance.cpp
| | | | | | | M	src/shogun/distance/CosineDistance.h
| | | | | | | M	src/shogun/distance/CustomDistance.cpp
| | | | | | | M	src/shogun/distance/CustomDistance.h
| | | | | | | M	src/shogun/distance/Distance.cpp
| | | | | | | M	src/shogun/distance/Distance.h
| | | | | | | M	src/shogun/distance/EuclidianDistance.h
| | | | | | | M	src/shogun/distance/GeodesicMetric.h
| | | | | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | | | | M	src/shogun/distance/JensenMetric.h
| | | | | | | M	src/shogun/distance/MahalanobisDistance.cpp
| | | | | | | M	src/shogun/distance/MahalanobisDistance.h
| | | | | | | M	src/shogun/distance/ManhattanMetric.h
| | | | | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | | | | M	src/shogun/distance/MinkowskiMetric.h
| | | | | | | M	src/shogun/distance/SimpleDistance.h
| | | | | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | | | | M	src/shogun/distance/TanimotoDistance.h
| | | | | | | M	src/shogun/distributions/Gaussian.cpp
| | | | | | | M	src/shogun/distributions/Gaussian.h
| | | | | | | M	src/shogun/distributions/HMM.cpp
| | | | | | | M	src/shogun/distributions/HMM.h
| | | | | | | M	src/shogun/distributions/Histogram.cpp
| | | | | | | M	src/shogun/distributions/Histogram.h
| | | | | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | | | | M	src/shogun/distributions/PositionalPWM.h
| | | | | | | M	src/shogun/evaluation/MeanAbsoluteError.h
| | | | | | | M	src/shogun/evaluation/MeanSquaredError.h
| | | | | | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | | | | | M	src/shogun/evaluation/MulticlassAccuracy.h
| | | | | | | M	src/shogun/evaluation/PRCEvaluation.h
| | | | | | | M	src/shogun/evaluation/ROCEvaluation.h
| | | | | | | M	src/shogun/features/AttributeFeatures.h
| | | | | | | M	src/shogun/features/BinnedDotFeatures.cpp
| | | | | | | M	src/shogun/features/BinnedDotFeatures.h
| | | | | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | | | | M	src/shogun/features/CombinedDotFeatures.h
| | | | | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | | | | M	src/shogun/features/DotFeatures.cpp
| | | | | | | M	src/shogun/features/DotFeatures.h
| | | | | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | | | | M	src/shogun/features/FKFeatures.cpp
| | | | | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | | | | M	src/shogun/features/LBPPyrDotFeatures.cpp
| | | | | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | | | | M	src/shogun/features/Labels.cpp
| | | | | | | M	src/shogun/features/Labels.h
| | | | | | | M	src/shogun/features/PolyFeatures.cpp
| | | | | | | M	src/shogun/features/RejectionStrategy.h
| | | | | | | M	src/shogun/features/SNPFeatures.h
| | | | | | | M	src/shogun/features/SimpleFeatures.cpp
| | | | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | | | M	src/shogun/features/SparseFeatures.cpp
| | | | | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | | | | M	src/shogun/features/StreamingStringFeatures.cpp
| | | | | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | | | | M	src/shogun/features/StringFeatures.h
| | | | | | | M	src/shogun/features/StringFileFeatures.h
| | | | | | | M	src/shogun/features/TOPFeatures.cpp
| | | | | | | M	src/shogun/features/WDFeatures.cpp
| | | | | | | M	src/shogun/io/AsciiFile.cpp
| | | | | | | M	src/shogun/io/AsciiFile.h
| | | | | | | M	src/shogun/io/BinaryFile.h
| | | | | | | M	src/shogun/io/BinaryStream.h
| | | | | | | M	src/shogun/io/File.h
| | | | | | | M	src/shogun/io/HDF5File.cpp
| | | | | | | M	src/shogun/io/HDF5File.h
| | | | | | | M	src/shogun/io/LibSVMFile.h
| | | | | | | M	src/shogun/io/MemoryMappedFile.h
| | | | | | | M	src/shogun/io/SerializableAsciiReader00.h
| | | | | | | M	src/shogun/io/SimpleFile.h
| | | | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | | | | M	src/shogun/io/StreamingAsciiFile.h
| | | | | | | M	src/shogun/io/StreamingFile.cpp
| | | | | | | M	src/shogun/io/StreamingFileFromFeatures.h
| | | | | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/shogun/kernel/ANOVAKernel.h
| | | | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/CommWordStringKernel.h
| | | | | | | M	src/shogun/kernel/CustomKernel.h
| | | | | | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/DistanceKernel.h
| | | | | | | M	src/shogun/kernel/ExponentialKernel.h
| | | | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | | | M	src/shogun/kernel/GaussianMatchStringKernel.h
| | | | | | | M	src/shogun/kernel/GaussianShiftKernel.h
| | | | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.h
| | | | | | | M	src/shogun/kernel/JensenShannonKernel.cpp
| | | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | | | M	src/shogun/kernel/Kernel.h
| | | | | | | M	src/shogun/kernel/KernelNormalizer.h
| | | | | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | | | | M	src/shogun/kernel/MultiquadricKernel.h
| | | | | | | M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | | | | | | M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | M	src/shogun/kernel/OligoStringKernel.cpp
| | | | | | | M	src/shogun/kernel/OligoStringKernel.h
| | | | | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | | | | M	src/shogun/kernel/PowerKernel.h
| | | | | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | | | | M	src/shogun/kernel/PyramidChi2.h
| | | | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | | | | | M	src/shogun/kernel/RidgeKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/SNPStringKernel.h
| | | | | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | | | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | | | | M	src/shogun/kernel/SphericalKernel.h
| | | | | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/StringKernel.h
| | | | | | | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/TensorProductPairKernel.h
| | | | | | | M	src/shogun/kernel/VarianceKernelNormalizer.h
| | | | | | | M	src/shogun/kernel/WaveletKernel.h
| | | | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | | | | | | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | | | | | | M	src/shogun/lib/Array2.h
| | | | | | | M	src/shogun/lib/BitString.h
| | | | | | | M	src/shogun/lib/Cache.h
| | | | | | | M	src/shogun/lib/Compressor.h
| | | | | | | M	src/shogun/lib/CoverTree.h
| | | | | | | M	src/shogun/lib/DataType.h
| | | | | | | M	src/shogun/lib/DynInt.h
| | | | | | | M	src/shogun/lib/GCArray.h
| | | | | | | M	src/shogun/lib/Hash.cpp
| | | | | | | M	src/shogun/lib/Hash.h
| | | | | | | M	src/shogun/lib/IndirectObject.h
| | | | | | | M	src/shogun/lib/List.h
| | | | | | | M	src/shogun/lib/Set.h
| | | | | | | M	src/shogun/lib/Signal.h
| | | | | | | M	src/shogun/lib/Trie.cpp
| | | | | | | M	src/shogun/lib/Trie.h
| | | | | | | M	src/shogun/lib/memory.h
| | | | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | | | | M	src/shogun/machine/DistanceMachine.h
| | | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | | | | | M	src/shogun/machine/LinearMachine.cpp
| | | | | | | M	src/shogun/machine/LinearMachine.h
| | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | | M	src/shogun/machine/Machine.cpp
| | | | | | | M	src/shogun/machine/Machine.h
| | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | M	src/shogun/machine/MulticlassMachine.h
| | | | | | | M	src/shogun/mathematics/Cplex.cpp
| | | | | | | M	src/shogun/mathematics/Cplex.h
| | | | | | | M	src/shogun/mathematics/Loss.h
| | | | | | | M	src/shogun/mathematics/Math.cpp
| | | | | | | M	src/shogun/mathematics/Math.h
| | | | | | | M	src/shogun/mathematics/arpack.cpp
| | | | | | | M	src/shogun/mathematics/arpack.h
| | | | | | | M	src/shogun/mathematics/lapack.cpp
| | | | | | | M	src/shogun/mathematics/lapack.h
| | | | | | | M	src/shogun/multiclass/MulticlassLibLinear.cpp
| | | | | | | M	src/shogun/multiclass/MulticlassLibLinear.h
| | | | | | | M	src/shogun/multiclass/MulticlassOCAS.cpp
| | | | | | | M	src/shogun/multiclass/MulticlassOCAS.h
| | | | | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| | | | | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | | | | | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | | | | | | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| | | | | | | M	src/shogun/preprocessor/KernelPCA.cpp
| | | | | | | M	src/shogun/preprocessor/KernelPCA.h
| | | | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | | | M	src/shogun/preprocessor/PCA.h
| | | | | | | M	src/shogun/preprocessor/Preprocessor.h
| | | | | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | | | | M	src/shogun/preprocessor/SimplePreprocessor.cpp
| | | | | | | M	src/shogun/preprocessor/SortWordString.cpp
| | | | | | | M	src/shogun/preprocessor/SparsePreprocessor.h
| | | | | | | M	src/shogun/regression/KernelRidgeRegression.h
| | | | | | | M	src/shogun/regression/LeastSquaresRegression.h
| | | | | | | M	src/shogun/regression/LinearRidgeRegression.h
| | | | | | | M	src/shogun/regression/svr/LibSVR.h
| | | | | | | M	src/shogun/regression/svr/MKLRegression.cpp
| | | | | | | M	src/shogun/regression/svr/MKLRegression.h
| | | | | | | M	src/shogun/regression/svr/SVRLight.h
| | | | | | | M	src/shogun/structure/DynProg.cpp
| | | | | | | M	src/shogun/structure/DynProg.h
| | | | | | | M	src/shogun/structure/IntronList.cpp
| | | | | | | M	src/shogun/structure/IntronList.h
| | | | | | | M	src/shogun/structure/Plif.cpp
| | | | | | | M	src/shogun/structure/Plif.h
| | | | | | | M	src/shogun/structure/PlifArray.cpp
| | | | | | | M	src/shogun/structure/PlifArray.h
| | | | | | | M	src/shogun/structure/PlifMatrix.cpp
| | | | | | | M	src/shogun/structure/PlifMatrix.h
| | | | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | | | | M	src/shogun/structure/SegmentLoss.h
| | | | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | | | | M	src/shogun/ui/GUIClassifier.h
| | | | | | | M	src/shogun/ui/GUIConverter.h
| | | | | | | M	src/shogun/ui/GUIDistance.cpp
| | | | | | | M	src/shogun/ui/GUIFeatures.h
| | | | | | | M	src/shogun/ui/GUIHMM.cpp
| | | | | | | M	src/shogun/ui/GUIHMM.h
| | | | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | | | M	src/shogun/ui/GUILabels.h
| | | | | | | M	src/shogun/ui/GUIMath.h
| | | | | | | M	src/shogun/ui/GUIPluginEstimate.h
| | | | | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | | | | M	src/shogun/ui/GUIPreprocessor.h
| | | | | | | M	src/shogun/ui/GUIStructure.h
| | | | | | | M	src/shogun/ui/SGInterface.cpp
| | | | | | | M	src/shogun/ui/SGInterface.h
| | | | | | |          
* | | | | | |   commit 3067e32d9d0e18792f47364ed8c4fdbe3d8cb999
|\ \ \ \ \ \ \  Merge: 94b3e53 48ca5fc
| |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | |   Date:   Fri Mar 30 11:46:15 2012 -0700
| | | | | | |   
| | | | | | |       Merge pull request #403 from pluskid/gsoc-pullrequest-1
| | | | | | |       
| | | | | | |       Make the testsuite data generation script run again.
| | | | | | |        
* | | | | | | commit 94b3e53d6f945df4f1c815a4f37ef47d1d31f646
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Thu Mar 29 23:18:48 2012 +0400
| | | | | | | 
| | | | | | |     Updates for NEWS and CONTRIBUTIONS
| | | | | | | 
| | | | | | | M	src/CONTRIBUTIONS
| | | | | | | M	src/NEWS
| | | | | | |        
* | | | | | | commit 1ae626a50fcf663574d7d1705e061848990ce1ae
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Thu Mar 29 22:20:23 2012 +0400
| | | | | | | 
| | | | | | |     Some final fixes for #401
| | | | | | | 
| | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | M	src/shogun/machine/MulticlassMachine.h
| | | | | | |          
* | | | | | |   commit 35a2809e878149a65527328ad9df11a49a0935f9
|\ \ \ \ \ \ \  Merge: f18cd4d 3d055bc
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Thu Mar 29 21:46:19 2012 +0400
| | | | | | | | 
| | | | | | | |     Merge branch 'multiclass_1vs1' of git://github.com/iglesias/shogun
| | | | | | | |         
| * | | | | | | commit 3d055bc5db153ed491d17ebde2bef079846258a7
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 14:57:40 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ dual to primal SVM in the examples, as suggested by Heiko
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | | |         
| * | | | | | | commit 04de64c802043d6df7bf556a879caeb6716481eb
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 11:27:18 2012 +0200
| | | | | | | | 
| | | | | | | |     +m multiclass machie example in Makefile
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | |         
| * | | | | | | commit 36fdcf705ee7cdf1cead23d7de93a89e836f3bf3
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 11:26:38 2012 +0200
| | | | | | | | 
| | | | | | | |     * compile warning
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | | | | | |         
| * | | | | | | commit 234a737b5462c2b7af2b7dbaf802c5f9b550a8cc
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 11:06:33 2012 +0200
| | | | | | | | 
| | | | | | | |     - breaks after returns
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 21dd36c13ae0bc239c368317805ffbab520918f1
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 11:03:12 2012 +0200
| | | | | | | | 
| | | | | | | |     + libshogun and python_modular example of MulticlassMachine
| | | | | | | | 
| | | | | | | | A	examples/undocumented/libshogun/classifier_multiclasslinearmachine.cpp
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | | |         
| * | | | | | | commit ec256b51d6fec07513a746550712ef4c966f80a4
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 10:58:53 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ better comment
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 0373737f3f76c8511ed80990cbc05d4527a875bb
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 10:58:06 2012 +0200
| | | | | | | | 
| | | | | | | |     + block training if m_machine not specified
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | | |         
| * | | | | | | commit a178e654a54b1826c6410470fdc0e97ddf32ee10
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 10:31:02 2012 +0200
| | | | | | | | 
| | | | | | | |     + assign m_machine default value in default constructor
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 51289d71d7eeee37821cfa340a18947d72f6c785
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 09:04:06 2012 +0200
| | | | | | | | 
| | | | | | | |     - break after return
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit df95457dce5d092d01a79321414aebd0109f2a1d
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 29 09:01:27 2012 +0200
| | | | | | | | 
| | | | | | | |     ~ comment UNREF in destructor to avoid complaint with valgrind and + more comments
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 3d3dc8e2fddaeea3860728cd22de958d3e1f6cce
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Tue Mar 27 09:05:39 2012 +0200
| | | | | | | | 
| | | | | | | |     * fix seg faults while applying/training MulticlassMachine and other bugs
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 6398aa40a59ea0293218bad059a19b1ae9aa4007
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Tue Mar 27 07:52:41 2012 +0200
| | | | | | | | 
| | | | | | | |     * fix indent
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | | |         
| * | | | | | | commit 321b89748f60eb9b594ddb70070683c1d14c68ca
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Tue Mar 27 01:41:23 2012 +0200
| | | | | | | | 
| | | | | | | |     - debug prints
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 3059351191417717950fe6b13970cadbba292a51
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Tue Mar 27 00:52:36 2012 +0200
| | | | | | | | 
| | | | | | | |     + MulticlassMachine classify one versus one
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | | M	src/shogun/machine/MulticlassMachine.h
| | | | | | | |         
| * | | | | | | commit 79e690aaf733defed35bba0a3f50a74572a1034d
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 22 02:45:52 2012 +0100
| | | | | | | | 
| | | | | | | |     + toy example to check correct MulticlassLinearMachine
| | | | | | | | 
| | | | | | | | A	examples/undocumented/python_modular/classifier_multiclasslinearmachine_modular.py
| | | | | | | |         
| * | | | | | | commit 1ff373b7740838d19b7d8ea87b34f613a7dd418b
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 22 02:45:11 2012 +0100
| | | | | | | | 
| | | | | | | |     + set and remove subset on features UNIMPLEMENTED
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | | | | | |         
| * | | | | | | commit 781c404130b5a2b67180c9c6b1a9f267551e8fdb
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 22 02:44:45 2012 +0100
| | | | | | | | 
| | | | | | | |     + set and remove subset on features
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/LinearMulticlassMachine.h
| | | | | | | |         
| * | | | | | | commit 6946950de244ca5ed82ef8898052e3edbbab1158
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 22 02:43:42 2012 +0100
| | | | | | | | 
| | | | | | | |     + implementation of train one vs one, TODO fix memory usage
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | | | | |         
| * | | | | | | commit 84b7007483920ee2388c2233273104fc5852ba32
| | | | | | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | | | | | Date:   Thu Mar 22 02:43:01 2012 +0100
| | | | | | | | 
| | | | | | | |     + interface for one vs one training
| | | | | | | | 
| | | | | | | | M	src/shogun/machine/MulticlassMachine.h
| | | | | | | |         
| | | | * | | | commit 3e7a74bbab95335f775525e9741c6476a4149967
| | | | | | | | Author: pluskid <pluskid@gmail.com>
| | | | | | | | Date:   Sat Mar 31 11:14:33 2012 +0800
| | | | | | | | 
| | | | | | | |     Added copyright information, and formatted code according to coding conventions.
| | | | | | | | 
| | | | | | | | M	src/shogun/evaluation/ClusteringAccuracy.h
| | | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | | | | | M	src/shogun/evaluation/ClusteringEvaluation.h
| | | | | | | | M	src/shogun/mathematics/munkres.cpp
| | | | | | | | M	src/shogun/mathematics/munkres.h
| | | | | | | |           
| | | * | | | |   commit 104f9bfd3630dc052d9487f7cd896bc58be4c29a
| | | |\ \ \ \ \  Merge: 71ec000 f18cd4d
| |_|_|/ / / / /  Author: pluskid <pluskid@gmail.com>
|/| | | / / / /   Date:   Thu Mar 29 10:29:36 2012 +0800
| | | |/ / / /    
| | | | | | |         Merge remote-tracking branch 'upstream/master'
| | | | | | |        
* | | | | | | commit f18cd4ddf0c1c5dc0507ab232a2d11bfc5d7e6e6
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Wed Mar 28 22:26:59 2012 +0200
| | | | | | | 
| | | | | | |     show case / exception in tester
| | | | | | | 
| | | | | | | M	testsuite/python_modular/tester.py
| | | | | | |        
* | | | | | | commit d5af1471d0d0502900e49b9eb717fbc36d0339ff
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Wed Mar 28 22:25:56 2012 +0200
| | | | | | | 
| | | | | | |     initializ m_features with NULL / fixes hang
| | | | | | | 
| | | | | | | M	src/shogun/features/BinnedDotFeatures.cpp
| | | | | | |        
* | | | | | | commit 53aa559e0cb39bfa20a44d147d0956668ba18aa9
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Wed Mar 28 21:32:44 2012 +0200
| | | | | | | 
| | | | | | |     add -f option to tester to only show failed tests
| | | | | | | 
| | | | | | | M	testsuite/python_modular/tester.py
| | | | | | |        
* | | | | | | commit 87863c0dc3cd2871b56f6c30586284f84b72a341
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Wed Mar 28 21:16:54 2012 +0200
| | | | | | | 
| | | | | | |     remove debug code / string typemap
| | | | | | | 
| | | | | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | | | |          
* | | | | | |   commit 4ab5434e7df4805882532db77e0bcade336be545
|\ \ \ \ \ \ \  Merge: 867231a 39a9241
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Mar 28 11:12:24 2012 -0700
| | | | | | | | 
| | | | | | | |     Merge pull request #398 from karlnapf/master
| | | | | | | |     
| | | | | | | |     First bunch of fixes for migration
| | | | | | | |         
| * | | | | | | commit 39a92413c0210b6de0d7417a24cfd589cda7fc8e
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 12:30:48 2012 +0100
| | | | | | | | 
| | | | | | | |     fixed another bug regarding empty parameter bases
| | | | | | | | 
| | | | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | | |         
| * | | | | | | commit bc3490e62dbb3585b7de22016960474546c19b1c
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 12:00:38 2012 +0100
| | | | | | | | 
| | | | | | | |     another fix for arrays of SGObjects
| | | | | | | | 
| | | | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | | |         
| * | | | | | | commit a332ff1761b48fc2af0fb536d80c068b22375e4a
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 11:28:43 2012 +0100
| | | | | | | | 
| | | | | | | |     cleanups
| | | | | | | | 
| | | | | | | | M	src/shogun/base/Parameter.cpp
| | | | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | | |         
| * | | | | | | commit 9346c02e87fac38fc6343b1de58d550cdb734df0
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 11:21:23 2012 +0100
| | | | | | | | 
| | | | | | | |     migration bugfixes, debug messages and cleanups
| | | | | | | | 
| | | | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | | |         
| * | | | | | | commit 5563422c802ad85a183566f035a3707ac5f5c6c5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 11:20:06 2012 +0100
| | | | | | | | 
| | | | | | | |     removed delte_all_but_data method because this stuff is now done in destructor of TParameter
| | | | | | | | 
| | | | | | | | M	src/shogun/base/Parameter.cpp
| | | | | | | | M	src/shogun/base/Parameter.h
| | | | | | | |         
| * | | | | | | commit 4a8bcc7f46020e1f5a669c5281ff1cd15eab16cc
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 11:18:31 2012 +0100
| | | | | | | | 
| | | | | | | |     added flag to allocate_data_from_scratch to not allocate non-scalar non-sgobject data
| | | | | | | | 
| | | | | | | | M	src/shogun/base/Parameter.h
| | | | | | | |         
| * | | | | | | commit dfdf9d6284f5b9c54accebd76626fd1a912178bd
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Mar 28 11:15:37 2012 +0100
| | | | | | | | 
| | | | | | | |     bugfixes and debug messages
| | | | | | | | 
| | | | | | | | M	src/shogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit c1d72d2bcf7d30620d3bd81d3ca328cad4c7ea29
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue Mar 27 12:21:08 2012 +0100
| | | | | | | | 
| | | | | | | |     state of fehlersuche
| | | | | | | | 
| | | | | | | | M	src/shogun/base/Parameter.cpp
| | | | | | | | M	src/shogun/base/Parameter.h
| | | | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | | |           
* | | | | | | |   commit 867231a85c945deb0fb1462bd4e3e5dfb67dba17
|\ \ \ \ \ \ \ \  Merge: 5ec1810 fb31a81
| |/ / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | |   Date:   Wed Mar 28 11:06:40 2012 -0700
| | | | | | | |   
| | | | | | | |       Merge pull request #399 from gsomix/python3_interface
| | | | | | | |       
| | | | | | | |       updates on python3 interface
| | | | | | | |         
| * | | | | | | commit fb31a81223c0f2b8d6fc5909c8ff5885e0c59fb2
|/ / / / / / /  Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | | | |   Date:   Wed Mar 28 19:39:18 2012 +0400
| | | | | | |   
| | | | | | |       fixed python typemaps
| | | | | | |   
| | | | | | |   M	src/configure
| | | | | | |   M	src/interfaces/modular/SGBase.i
| | | | | | |   M	src/interfaces/python_modular/swig_typemaps.i
| | | | | | |        
* | | | | | | commit 5ec1810ecb107ce7622a4c1862b39a045c3ce458
| |_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Tue Mar 27 23:00:28 2012 +0200
| | | | | |   
| | | | | |       make director based classes optional
| | | | | |   
| | | | | |   M	src/configure
| | | | | |   M	src/interfaces/modular/Kernel.i
| | | | | |   M	src/interfaces/modular/SGBase.i
| | | | | |   M	src/interfaces/modular/modshogun.i
| | | | | |   M	src/shogun/kernel/DirectorKernel.h
| | | | | |         
* | | | | |   commit b862acc6bbf1e9dc5528855a7a6cafc66a0c863f
|\ \ \ \ \ \  Merge: 929f735 92fe3a8
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Tue Mar 27 11:49:29 2012 -0700
| | | | | |   
| | | | | |       Merge pull request #396 from vigsterkr/master
| | | | | |       
| | | | | |       There was a little typo in the ChiSquareDistance header
| | | | | |       
| * | | | | commit 92fe3a866849783366ffbd2e9e622f1c47943f23
|/ / / / /  Author: Viktor Gal <viktor.gal@maeth.com>
| | | | |   Date:   Tue Mar 27 15:28:27 2012 +0200
| | | | |   
| | | | |       A little typo fix of define in ChiSquareDistance
| | | | |   
| | | | |   M	src/shogun/distance/ChiSquareDistance.h
| | | | |      
* | | | | commit 929f735ae81687b33eaa108d60ca5d7a6e873105
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Mar 26 21:38:16 2012 +0200
| | | | | 
| | | | |     copy some virtual function calls to director kernel to fix some errors
| | | | | 
| | | | | M	src/shogun/kernel/DirectorKernel.h
| | | | |      
* | | | | commit d338b9a358c7476240f8a6517a277c8290580dc4
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Mar 26 20:51:38 2012 +0200
| | | | | 
| | | | |     fix directorkernel init warning
| | | | | 
| | | | | M	src/shogun/kernel/DirectorKernel.h
| | | | |      
* | | | | commit c4ffa84d7f78199a51164c9643905a2d34d8172e
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Mar 26 20:06:24 2012 +0400
| | | | | 
| | | | |     Fixed mc machine training
| | | | | 
| | | | | M	src/shogun/machine/MulticlassMachine.cpp
| | | | |      
* | | | | commit f9cadf2441168aba71bfff9dcd7e67b077b3e4f3
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Mar 26 20:06:04 2012 +0400
| | | | | 
| | | | |     Warnings removal
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 71ec00057269c1587eeeacdb9b94a91a54c0a641
| | | | | Author: pluskid <pluskid@gmail.com>
| | | | | Date:   Thu Mar 29 10:26:03 2012 +0800
| | | | | 
| | | | |     Remove debug code.
| | | | | 
| | | | | M	examples/undocumented/python_modular/evaluation_clustering.py
| | | | | M	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | | |      
| | * | | commit b5c87a436046b9c416cb0758e053b64ee6d8b0d1
| | | | | Author: pluskid <pluskid@gmail.com>
| | | | | Date:   Thu Mar 29 10:16:05 2012 +0800
| | | | | 
| | | | |     Added example of kmeans clustering and computing clustering performance via accuracy.
| | | | | 
| | | | | A	examples/undocumented/python_modular/evaluation_clustering.py
| | | | |      
| | * | | commit 171c9f101301fde6e777ac33c73c3f7f1e11cab2
| |/ / /  Author: pluskid <pluskid@gmail.com>
| | | |   Date:   Thu Mar 29 10:15:07 2012 +0800
| | | |   
| | | |       Added label mapping support and accuracy calculation for clustering evaluation.
| | | |   
| | | |   M	src/interfaces/modular/Evaluation.i
| | | |   M	src/interfaces/modular/Evaluation_includes.i
| | | |   A	src/shogun/evaluation/ClusteringAccuracy.h
| | | |   A	src/shogun/evaluation/ClusteringEvaluation.cpp
| | | |   A	src/shogun/evaluation/ClusteringEvaluation.h
| | | |   M	src/shogun/lib/DataType.h
| | | |   A	src/shogun/mathematics/munkres.cpp
| | | |   A	src/shogun/mathematics/munkres.h
| | | |     
| * | | commit 48ca5fc79a2b8885c76bbc99bba13693b5ac989d
| | | | Author: pluskid <pluskid@gmail.com>
| | | | Date:   Thu Mar 29 06:17:54 2012 +0800
| | | | 
| | | |     Refinements of making testsuite data generation script run.
| | | | 
| | | | M	testsuite/generator/classifier.py
| | | | M	testsuite/generator/kernel.py
| | | |     
| * | | commit c6a14318c87c8fc051747f2557ba7d58f04d4eed
|/ / /  Author: pluskid <pluskid@gmail.com>
| | |   Date:   Wed Mar 28 16:33:48 2012 +0800
| | |   
| | |       Make the testsuite data generation script run again.
| | |       
| | |       Fixed some API change due to historical reasons.
| | |       Some unsured changes are commented out.
| | |   
| | |   M	testsuite/generator/classifier.py
| | |   M	testsuite/generator/featop.py
| | |   M	testsuite/generator/kernel.py
| | |   M	testsuite/generator/preproc.py
| | |   M	testsuite/generator/regression.py
| | |      
* | |   commit e6ec56969b3ab57c09472869bc8b8d923d55098d
|\ \ \  Merge: 11d9041 f8fa1ec
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Mar 26 04:49:12 2012 -0700
| | | | 
| | | |     Merge pull request #392 from pluskid/master
| | | |     
| | | |     The filenames for two example code are wrong
| | | |     
| * | | commit f8fa1ece417df54870eb251fc7697228bb9fb5f1
| | |/  Author: pluskid <pluskid@gmail.com>
| |/|   Date:   Mon Mar 26 17:16:04 2012 +0800
| | |   
| | |       Fix (swap) the filename of two example files.
| | |   
| | |   M	examples/undocumented/matlab_and_octave/clustering_hierarchical.m
| | |   M	examples/undocumented/matlab_and_octave/clustering_kmeans.m
| | |      
* | |   commit 11d904105c3233cc08b9dce74126ea09d2bc17a2
|\ \ \  Merge: 88e276d 1721dfd
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Mar 26 04:48:30 2012 -0700
| | | | 
| | | |     Merge pull request #393 from iglesias/qda
| | | |     
| | | |     QDA
| | | |     
| * | | commit 1721dfd29168dc60ed1ee0631fc59f7e702156ca
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Mon Mar 26 12:36:57 2012 +0200
| | | | 
| | | |     + QDA include to avoid failure in buildbot and ~ ndarray destroy -> free
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | |     
| * | | commit 5211e2a689caa9c93b57524592aadcb9804805ad
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Mon Mar 26 12:14:30 2012 +0200
| | | | 
| | | |     + dofree member in SGNDArray
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit 6091778717304e0f1e3eb34b3f2d250889a541ab
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 11:42:21 2012 +0200
| | | | 
| | | |     ~ free_matrix instead of destroy_matrix
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | |     
* | | | commit 88e276d12c6863d05c636673a7a8d080e9964ae9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Mar 26 11:02:27 2012 +0200
| | | | 
| | | |     add support for director kernel
| | | | 
| | | | A	examples/undocumented/python_modular/kernel_director_modular.py
| | | | M	src/interfaces/modular/Kernel.i
| | | | M	src/interfaces/modular/Kernel_includes.i
| | | | M	src/interfaces/modular/SGBase.i
| | | | M	src/interfaces/modular/modshogun.i
| | | | A	src/shogun/kernel/DirectorKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | |       
* | | |   commit c26d0c9d447c596e227882ca94526f73595b5e3f
|\ \ \ \  Merge: f139711 162f806
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Mar 26 01:31:44 2012 -0700
| | | |   
| | | |       Merge pull request #386 from iglesias/qda
| | | |       
| | | |       QDA
| | | |     
| * | | commit 162f806a8075d6e63c11d436d9ec0758586420d2
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 11:09:53 2012 +0200
| | | | 
| | | |     * SGNDArray fix indentation
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit 8f325a8bcf3527f737db85c76e7919f22b95dffe
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 10:57:39 2012 +0200
| | | | 
| | | |     - members that were not used any more in classification (rotations and scalings)
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | | M	src/shogun/classifier/QDA.h
| | | |     
| * | | commit 075fcd22f67758324989ecca113d2d9319c74247
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 10:47:37 2012 +0200
| | | | 
| | | |     ~ some computations in apply moved to train not to do the same lot of times
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | | M	src/shogun/classifier/QDA.h
| | | |     
| * | | commit f0e324a57026ada724cd4d5b0861ae63dfcc7524
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 10:23:47 2012 +0200
| | | | 
| | | |     ~ QDA big change, SGMatrix replaces SGVector* and SGNDArray SGMatrix*
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | | M	src/shogun/classifier/QDA.h
| | | |     
| * | | commit 231aaff1ed66696d41b30b072f7ee4db55c29d64
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Sun Mar 25 10:22:27 2012 +0200
| | | | 
| | | |     + extend functionality og SGMatrix and SGNDarray (used in QDA)
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit 7cc0d67efb9d57108c7a9708f637b35dcad08214
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Mar 23 09:46:42 2012 +0100
| | | | 
| | | |     fix indentation
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit d4c27d93b963d047ce710f07cf492ddf8f459a9d
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Mar 23 09:45:28 2012 +0100
| | | | 
| | | |     - SG_REF and SG_UNREF on labels, already done with SG_REF and SG_UNREF on qda
| | | | 
| | | | M	examples/undocumented/libshogun/classifier_qda.cpp
| | | |     
| * | | commit 3c20efcc8fec0d78ecb2353ded35eb99632caecf
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Mar 23 09:26:58 2012 +0100
| | | | 
| | | |     + qda libshogun examples and + in Makefile
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/classifier_qda.cpp
| | | |     
| * | | commit 7d1a81a3e7022d21bd07e637a03c4543110c95e4
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Fri Mar 23 09:17:16 2012 +0100
| | | | 
| | | |     - memory leak related to clone_vector and ~ some ASSERT -> SG_ERROR
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | |     
| * | | commit a9f5de00538f091969913cf2b4446220e2a1e1a6
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 13:08:44 2012 +0100
| | | | 
| | | |     + private field for members in qda interface and ~ more members to private
| | | | 
| | | | M	src/shogun/classifier/QDA.h
| | | |     
| * | | commit c5407b966942798daaaf7f1c3a1d166139021dc9
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 13:03:30 2012 +0100
| | | | 
| | | |     - qda invsqrt approximation
| | | | 
| | | | M	src/shogun/classifier/QDA.cpp
| | | |     
| * | | commit 76427e9fa369db93086faa8fd4f78c73ac940900
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:50:04 2012 +0100
| | | | 
| | | |     - TODO
| | | | 
| | | | M	src/shogun/classifier/QDA.h
| | | |     
| * | | commit 20d9ea9482c8bd84afc29d3f9570fc66b12dbd4c
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:40:29 2012 +0100
| | | | 
| | | |     + nice multiclass qda example :)
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/multiclass_qda.py
| | | |     
| * | | commit 36e4d53138b53e92d642bb3875eee771ebb71fab
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:40:12 2012 +0100
| | | | 
| | | |     + basic qda example of use
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/qda.py
| | | |     
| * | | commit d2ae11850a5752b5143dcdc470009a9a0a219c9b
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:39:19 2012 +0100
| | | | 
| | | |     * small bug fix, identation and typo
| | | | 
| | | | M	src/shogun/classifier/LDA.cpp
| | | | M	src/shogun/classifier/LDA.h
| | | |     
| * | | commit c509402d83b8ef81396c2882b066bd955ee98cbd
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:37:24 2012 +0100
| | | | 
| | | |     + qda naming conversions for interfaces
| | | | 
| | | | M	src/interfaces/modular/Classifier.i
| | | | M	src/interfaces/modular/Classifier_includes.i
| | | |     
| * | | commit 648bafd0d2172889501fc29348ea01716fbde62f
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:35:53 2012 +0100
| | | | 
| | | |     + CT_QDA
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| * | | commit 6d7da17e9c1a66bf30b2ae72b16cfc7ca14c94e2
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:34:06 2012 +0100
| | | | 
| | | |     + arg max function used in qda
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 6c34c1a072577cb957615649ce604a0cfd3f86be
| | | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | | Date:   Thu Mar 22 00:33:01 2012 +0100
| | | | 
| | | |     + QDA implementation
| | | | 
| | | | A	src/shogun/classifier/QDA.cpp
| | | |     
| * | | commit 67325c051998ce8e02b334c47415b7ff65329f5d
| | |/  Author: iglesias <fernando.iglesiasg@gmail.com>
| |/|   Date:   Thu Mar 22 00:32:44 2012 +0100
| | |   
| | |       + QDA interface
| | |   
| | |   A	src/shogun/classifier/QDA.h
| | |      
* | |   commit f1397116be6d1732a88f6f046eb109cce35b8808
|\ \ \  Merge: 73352ab b84db40
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Mar 26 01:30:24 2012 -0700
| | | | 
| | | |     Merge pull request #384 from gsomix/python3_interface
| | | |     
| | | |     Partial support for python3 interface
| | | |     
| * | | commit b84db409f9e0df66ab7a107110f85dee4ace6f5d
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Sun Mar 25 02:06:30 2012 +0400
| | | | 
| | | |     Added support for python3 in configure and other files
| | | | 
| | | | M	src/.generate_link_dependencies.py
| | | | M	src/.scrub_docstrings.py
| | | | M	src/configure
| | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | M	src/shogun/base/class_list.cpp.py
| | | |     
| * | | commit d9554ffa2bc6c8bba63990aa83036d7356786bbf
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Fri Mar 23 16:36:24 2012 +0400
| | | | 
| | | |     Support for Python3 in configuration file
| | | | 
| | | | M	src/.generate_link_dependencies.py
| | | | M	src/configure
| | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | |     
| * | | commit de97958c07455e3175492e5720d6ce274565250f
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Fri Mar 23 14:36:20 2012 +0400
| | | | 
| | | |     Fixed codestyle
| | | | 
| | | | M	src/interfaces/modular/SGBase.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | M	src/interfaces/python_static/PythonInterface.h
| | | |     
| * | | commit 09b6f3a8aa4cbc97f35c589839d5218f7b81fe3f
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed Mar 21 23:36:25 2012 +0400
| | | | 
| | | |     A lot of small fixes
| | | | 
| | | | M	src/interfaces/modular/SGBase.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | M	src/interfaces/python_static/PythonInterface.h
| | | |     
| * | | commit ac00907a29aa6d3491c92ab6bbe442dccd3d37b0
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Wed Mar 21 17:26:28 2012 +0400
| | | | 
| | | |     Added support for python3 in the interfaces.
| | | | 
| | | | M	src/interfaces/modular/SGBase.i
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | M	src/interfaces/python_static/PythonInterface.h
| | | |       
* | | |   commit 73352abfbb07df07aa1c54969633ad15c2c51a11
|\ \ \ \  Merge: 346e157 904aa37
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Mar 25 19:18:32 2012 +0400
| | | | | 
| | | | |     Merge branch 'clean-docs' of git://github.com/shelhamer/shogun
| | | | |      
| * | | | commit 904aa374ec45fb31e0f96c22f93960712979ba71
| | |_|/  Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
| |/| |   Date:   Sat Mar 24 13:27:43 2012 -0400
| | | |   
| | | |       Cleanup doc pages: fix issue tracker url, typos, line length
| | | |   
| | | |   M	doc/pages/DeveloperTutorial.mainpage
| | | |   M	doc/pages/Documentation.mainpage
| | | |   M	doc/pages/EierlegendeWollmilchSauInterface.mainpage
| | | |   M	doc/pages/ExamplesLibshogun.mainpage
| | | |   M	doc/pages/ExamplesStaticOctave.mainpage
| | | |   M	doc/pages/FAQ.mainpage
| | | |   M	doc/pages/Installation.mainpage
| | | |   M	doc/pages/Methods.mainpage
| | | |   M	doc/pages/ModularTutorial.mainpage
| | | |   M	doc/pages/StaticInterfaces.mainpage
| | | |   M	doc/pages/StaticTutorial.mainpage
| | | |     
* | | | commit 346e157a2b6c995c860dc1d65b5d9ca044793810
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Mar 25 19:16:53 2012 +0400
| | | | 
| | | |     Few doc warnings removal
| | | | 
| | | | M	src/shogun/lib/memory.h
| | | |       
* | | |   commit f31c2484a322b11271093d74fdc3556106b548aa
|\ \ \ \  Merge: a170eac 38a2eb7
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Sat Mar 24 12:15:10 2012 -0700
| | | |   
| | | |       Merge pull request #389 from karlnapf/master
| | | |       
| | | |       some news updates
| | | |     
| * | | commit 38a2eb77adf5b0231274c879ad50cf8117f866b6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Mar 24 18:28:45 2012 +0000
| | | | 
| | | |     added parameter map entry to machine class
| | | | 
| | | | M	src/shogun/machine/Machine.cpp
| | | |     
| * | | commit 99e8aa8dc8de2cdd26164371c5c30434bcf5ad34
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Mar 24 18:28:31 2012 +0000
| | | | 
| | | |     removed a debug print
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | |     
| * | | commit 96059145683e5abda972693f96d40e9375515e11
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Sat Mar 24 18:28:18 2012 +0000
| | |   
| | |       added some stuff to news
| | |       increased param version
| | |   
| | |   M	src/NEWS
| | |    
* | | commit a170eacb642dfcd3e1b2c0daf7289b01340a4e62
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Mar 23 11:36:49 2012 +0100
| | | 
| | |     let check.sh propagate INCLUDES too
| | | 
| | | M	examples/undocumented/libshogun/check.sh
| | |    
* | | commit 9af2db0f7096472fdd3249932fa32d0799be5cd6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Mar 23 11:33:16 2012 +0100
| | | 
| | |     custom_kernel / kernel_backup appeared only in version 1
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
* | | commit f7df92275d40e068957c0a40a5277aaf91a47580
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Mar 23 11:22:41 2012 +0100
| | | 
| | |     increment parameter format version 0 -> 1
| | | 
| | | M	src/NEWS
| | |    
* | | commit 5d52c9e05112f2ae7d3c5ce6b399826737670740
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Mar 23 11:19:15 2012 +0100
| | | 
| | |     propagate INCLUDES to libshogun examples
| | | 
| | | M	src/Makefile.template
| | |    
* | | commit 27646c2c9c3759cadb2cb5dd2095131c8fd5d45a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Mar 23 09:03:42 2012 +0100
| | | 
| | |     remove blas/lapack functions from Math headers
| | |     
| | |     in particula drop dgemm / dgemv which can be directly used from atlas
| | |     anyways.
| | | 
| | | M	src/shogun/classifier/svm/Tron.cpp
| | | M	src/shogun/mathematics/Math.cpp
| | | M	src/shogun/mathematics/Math.h
| | | M	src/shogun/preprocessor/KernelPCA.cpp
| | |    
* | | commit b215b56dc53ca9efa631eae8ad57b302c4793c05
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Thu Mar 22 22:59:02 2012 +0100
| |   
| |       add /usr/include/atlas detection upon configure
| |   
| |   M	src/configure
| |   
* | commit 9e470fe007ea7e1e34da82b7861de878cdda2368
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Thu Mar 22 01:48:39 2012 +0400
|   
|       Late fix for java serialization dummies
|   
|   M	src/interfaces/modular/Library.i
|  
* commit 7c69ee2ca3a51a0f3d873a644df98b4bc692dbc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 21 08:10:07 2012 +0100
| 
|     add ctags target to upper makefile
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 5a50c33a61eb54919a864215ad7ab2c3dd522df5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Mar 21 01:23:05 2012 +0400
| 
|     Updated git ignore
| 
| M	.gitignore
|  
* commit 40fb872f82cde33a11fdc697b110aabdd8ac125c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Mar 21 01:13:57 2012 +0400
| 
|     Fixes for applications
| 
| M	applications/asp/asp
| M	applications/asp/signal_detectors.py
| M	applications/easysvm/esvm/experiment.py
| M	applications/msplicer/msplicer
| M	applications/msplicer/plif.py
| M	applications/msplicer/signal_detectors.py
|  
* commit f3f9bd965565117896f360de9b99db3c742ab582
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Mar 21 01:12:06 2012 +0400
| 
|     Restored plif array things
| 
| M	src/interfaces/modular/Library.i
|  
* commit 63dbdad86638538bcf4896fa0055b9f3429fb244
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Mar 21 01:11:26 2012 +0400
| 
|     Updated set_weights method
| 
| M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/shogun/kernel/WeightedCommWordStringKernel.h
|  
* commit 9c4d56395f6f4b4bc11630b4a2921f3f0a5b08bb
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Mar 20 23:56:21 2012 +0400
| 
|     Added message if test file is not present
| 
| M	testsuite/python_modular/tester.py
|  
* commit bb1f23855d66cea4699a7da203c78623de3c4d35
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Mar 20 23:55:45 2012 +0400
| 
|     Fixes for python examples
| 
| M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| M	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| D	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| A	examples/undocumented/python_modular/modelselection_grid_search_krr_modular.py
| D	examples/undocumented/python_modular/modelselection_grid_search_liblinear.py
| A	examples/undocumented/python_modular/modelselection_grid_search_liblinear_modular.py
| D	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| A	examples/undocumented/python_modular/modelselection_grid_search_libsvr_modular.py
|  
* commit b3157ca8cc4d4c4a23a11190137ca4a18dd82ff3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Mar 20 23:54:00 2012 +0400
| 
|     Added missed parameters map handling
| 
| M	src/shogun/kernel/CustomKernel.cpp
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/Machine.cpp
|  
* commit f3711c3df8d52ed65f4b309206eb738d1df21415
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 20 16:07:40 2012 +0100
| 
|     change labels -> m_labels
| 
| M	src/shogun/classifier/LPBoost.cpp
| M	src/shogun/classifier/LPM.cpp
| M	src/shogun/classifier/SubGradientLPM.cpp
| M	src/shogun/classifier/svm/CPLEXSVM.cpp
|  
* commit 4507b29dfeb894f72041535028c82e7ae568530f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 21:34:28 2012 +0100
| 
|     comment print functions in examples
| 
| M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
|  
* commit a2ab6a0eb03930ef7b00dd8106b3e8e3a399121d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 21:34:18 2012 +0100
| 
|     only import modshogun
| 
| M	testsuite/python_modular/tester.py
|  
* commit fd93c4745e62aec062beac9ae40388108cd19ec7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 21:01:51 2012 +0100
| 
|     fix a couple of issues like in applications
|     
|     most notably the SVM object is gone and replaced by KernelMachine
| 
| M	applications/arts/signal_sensor.py
| M	applications/msplicer/signal_detectors.py
| M	applications/ocr/Ai.py
| M	applications/sailfish/Makefile
|  
* commit b6a12d658f04c997e6639afd61b890b9fd221927
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 20:48:04 2012 +0100
| 
|     fix vw makefile
| 
| M	applications/vw/Makefile
|  
* commit 8f72f042ac77a4ed0cddabaab799b11fb037697d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 20:09:31 2012 +0100
| 
|     compare pickled version of SGObject instances not just ptrs
| 
| M	testsuite/python_modular/tester.py
|  
* commit 9a7aa4d2cf8848318ea1f983af5ccfed73c56105
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 08:32:38 2012 +0100
| 
|     fix spelling mistake -> warning
| 
| M	src/shogun/evaluation/CrossValidation.cpp
|  
* commit b8c0237a1bb8b91cfb958f087bedfe121922764c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 19 08:29:03 2012 +0100
| 
|     extract mahalanobis description and don't print anything in example
| 
| A	examples/descriptions/modular/distance_mahalanobis_modular.txt
| M	examples/undocumented/python_modular/distance_mahalanobis_modular.py
|  
* commit 1c8e712bdab138107f8efc688197de5d6b773759
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 18 21:54:21 2012 +0400
| 
|     Restored machine parameters names
| 
| M	src/shogun/machine/Machine.cpp
|  
* commit e759836ea964ab725af3bdbcba1d829385036df5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 16 22:43:07 2012 +0100
| 
|     mention EDRT as subpoint / no explicit version
| 
| M	src/NEWS
|  
* commit 61d237fb085972dd9a1aecaf1abe7dfbe5a1993f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 16 22:42:55 2012 +0100
| 
|     fix snappy detection
| 
| M	src/configure
|  
* commit a0a96961ff76b51edc64148a42e1352c99e7aa28
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 16 10:34:00 2012 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit d2e6729e9370391846f8ccc9ec61b614b9d06ed1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 16 10:33:41 2012 +0400
| 
|     Added train_state support for MC liblinear making possible to retrain svm
| 
| M	src/shogun/classifier/svm/SVM_linear.cpp
| M	src/shogun/classifier/svm/SVM_linear.h
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
| M	src/shogun/multiclass/MulticlassLibLinear.h
|  
* commit 75f982350c1c1d726188250299d440af7c7b0ef7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 16 10:32:47 2012 +0400
| 
|     Improved MC OCAS
| 
| M	src/shogun/multiclass/MulticlassOCAS.cpp
|  
* commit 923ed2caed3677f6ac2bcc85d1d4f62987ce6558
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 16 10:32:00 2012 +0400
| 
|     Fixed typo
| 
| M	src/shogun/loss/SquaredHingeLoss.h
|  
* commit ad6e22d313eb63d44e42f57d14e3752f14d11e5d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Mar 12 21:12:05 2012 +0400
| 
|     Fixed failing when compiling mc liblinear w/o lapack
| 
| M	src/shogun/multiclass/MulticlassLibLinear.cpp
| M	src/shogun/multiclass/MulticlassLibLinear.h
|  
* commit a1f097ce76c3c3e72cceeeef5af32a3866c65fac
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Mar 12 21:11:37 2012 +0400
| 
|     Warnings fixes
| 
| M	src/shogun/evaluation/MulticlassAccuracy.h
| M	src/shogun/features/SimpleFeatures.h
|  
* commit c48f6fbdfe0f4336e7fd7de30d9abba3c7c0058a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 11 10:24:32 2012 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit e57190560cd088731b147085590c2ba66950ee3a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 11 10:19:17 2012 +0400
| 
|     Unsigned comparison warning removal
| 
| M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
|  
* commit d9e114daf591b4a000ad782f152c045342d9ecbf
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 11 09:32:20 2012 +0400
| 
|     Fix for wrong variable commenting out
| 
| M	src/shogun/classifier/mkl/MKL.cpp
|  
* commit 5f0a20c150ced0d11518e8693f36d5f44e476728
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 11 02:21:57 2012 +0400
| 
|     Added supervised KLTSA
| 
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| A	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/SupervisedKernelLocalTangentSpaceAlignment.h
|  
* commit 780c82ac8aa76e1dc171bfc264d6dc70b3e615f3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Mar 11 02:21:21 2012 +0400
| 
|     Some rearrangements again
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| A	src/interfaces/modular/Multiclass.i
| A	src/interfaces/modular/Multiclass_includes.i
| M	src/interfaces/modular/modshogun.i
| M	src/shogun/classifier/AveragedPerceptron.cpp
| M	src/shogun/classifier/ConjugateIndex.cpp
| M	src/shogun/classifier/GaussianNaiveBayes.cpp
| M	src/shogun/classifier/KNN.cpp
| M	src/shogun/classifier/LDA.cpp
| M	src/shogun/classifier/Perceptron.cpp
| M	src/shogun/classifier/PluginEstimate.cpp
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLClassification.cpp
| M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/shogun/classifier/svm/GMNPSVM.cpp
| M	src/shogun/classifier/svm/GNPPSVM.cpp
| M	src/shogun/classifier/svm/GPBTSVM.cpp
| M	src/shogun/classifier/svm/LaRank.cpp
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/classifier/svm/LibSVM.cpp
| M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| M	src/shogun/classifier/svm/MPDSVM.cpp
| M	src/shogun/classifier/svm/MPDSVM.h
| D	src/shogun/classifier/svm/MulticlassLibLinear.cpp
| D	src/shogun/classifier/svm/MulticlassLibLinear.h
| D	src/shogun/classifier/svm/MulticlassOCAS.cpp
| D	src/shogun/classifier/svm/MulticlassOCAS.h
| M	src/shogun/classifier/svm/SGDQN.cpp
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/classifier/svm/SVMOcas.cpp
| M	src/shogun/classifier/svm/SVMSGD.cpp
| M	src/shogun/classifier/svm/ScatterSVM.cpp
| M	src/shogun/classifier/svm/SubGradientSVM.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/features/RejectionStrategy.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
| M	src/shogun/machine/MulticlassMachine.cpp
| A	src/shogun/multiclass/MulticlassLibLinear.cpp
| A	src/shogun/multiclass/MulticlassLibLinear.h
| A	src/shogun/multiclass/MulticlassOCAS.cpp
| A	src/shogun/multiclass/MulticlassOCAS.h
| M	src/shogun/regression/KernelRidgeRegression.cpp
| M	src/shogun/regression/LinearRidgeRegression.cpp
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/MKLRegression.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
|  
* commit c7ec009c87d4642db540908c72f039cbb8e13138
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 17:09:51 2012 +0400
| 
|     Added reject number counting
| 
| M	src/shogun/evaluation/MulticlassAccuracy.cpp
| M	src/shogun/evaluation/MulticlassAccuracy.h
|  
* commit 867b010a4493c483bac15b0fb5633e13daf098dd
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 17:01:58 2012 +0400
| 
|     Quick fix
| 
| M	src/shogun/machine/MulticlassMachine.cpp
|  
* commit 503697f7de946e3b5ab3317ff174252b2e533ed4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 16:59:53 2012 +0400
| 
|     Finally proper rejects handling
| 
| M	src/shogun/evaluation/MulticlassAccuracy.cpp
| M	src/shogun/machine/MulticlassMachine.cpp
|  
* commit f48d917f7209879d514d3dfcabdf32411f67d62e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 16:25:49 2012 +0400
| 
|     Proper rejection handling
| 
| M	src/shogun/evaluation/MulticlassAccuracy.cpp
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
|  
* commit a20eb5da349bf85c19b4bef0f09d710e29828167
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 16:25:29 2012 +0400
| 
|     Warning fix for mc ocas
| 
| M	src/shogun/classifier/svm/MulticlassOCAS.cpp
|  
* commit 6915cea508de66c73fbdff4a377ea9a5d5b40d39
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 15:19:38 2012 +0400
| 
|     Rejection strategies fixes
| 
| M	src/shogun/features/RejectionStrategy.h
| M	src/shogun/machine/MulticlassMachine.h
|  
* commit 3e01ebce37d9b207f9eea3169a54c01461a64bb2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Mar 10 12:50:14 2012 +0400
| 
|     Improvements for MC classifiers
| 
| M	src/shogun/classifier/svm/MulticlassLibLinear.cpp
| M	src/shogun/classifier/svm/MulticlassOCAS.cpp
| M	src/shogun/machine/MulticlassMachine.cpp
| M	src/shogun/machine/MulticlassMachine.h
|  
* commit b88552176f2471ab4711b5bcbc3e22a41637d504
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 23:56:56 2012 +0400
| 
|     updated NEWS
| 
| M	src/NEWS
|  
* commit 4453f4e41980b9ebec928be3a97f06e6470165b5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 23:39:35 2012 +0400
| 
|     Some rearrangements
| 
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/Features_includes.i
| M	src/shogun/classifier/svm/MulticlassLibLinear.h
| M	src/shogun/classifier/svm/MulticlassOCAS.h
| M	src/shogun/evaluation/MulticlassAccuracy.cpp
| M	src/shogun/evaluation/MulticlassAccuracy.h
| A	src/shogun/features/RejectionStrategy.h
| A	src/shogun/machine/KernelMulticlassMachine.h
| A	src/shogun/machine/LinearMulticlassMachine.h
| A	src/shogun/machine/MulticlassMachine.cpp
| A	src/shogun/machine/MulticlassMachine.h
| D	src/shogun/machine/multiclass/KernelMulticlassMachine.h
| D	src/shogun/machine/multiclass/LinearMulticlassMachine.h
| D	src/shogun/machine/multiclass/MulticlassMachine.cpp
| D	src/shogun/machine/multiclass/MulticlassMachine.h
| D	src/shogun/machine/multiclass/RejectionStrategy.h
|  
* commit 2ef8cd55ff0a00e516fb1db7b78903212bb35ca8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 14:05:25 2012 +0400
| 
|     Fixed max train time issue for MC OCAS
| 
| M	src/shogun/classifier/svm/MulticlassOCAS.cpp
| M	src/shogun/classifier/svm/libocas.cpp
|  
* commit c3aec3f2a4254559efdbe6e657b2407d28abaef9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 10:46:58 2012 +0100
| 
|     if max_train_time == 0 - disable time limit for ocas
| 
| M	src/shogun/classifier/svm/SVMOcas.cpp
| M	src/shogun/classifier/svm/libocas.cpp
|  
* commit ba9920e3f7806c75f1548ef73211979ca1132c6c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 12:49:47 2012 +0400
| 
|     Added maxtraintime initialization for ocas svm
| 
| M	src/shogun/classifier/svm/SVMOcas.cpp
|  
* commit 2d7d22fb95fe2d9f4280868aba7390303277c59e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 01:42:10 2012 +0400
| 
|     Introduced multiclass OCAS
| 
| A	examples/undocumented/python_modular/classifier_multiclassocas_modular.py
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| A	src/shogun/classifier/svm/MulticlassOCAS.cpp
| A	src/shogun/classifier/svm/MulticlassOCAS.h
|  
* commit 20f8baa88d8d4377161c6324003e02996e908f31
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 01:41:18 2012 +0400
| 
|     Fixes for MC OCAS
| 
| M	src/shogun/classifier/svm/libocas.cpp
|  
* commit d317d2fbdd660ba04adb21a6f196bdf6dec72bbd
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Mar 9 01:40:07 2012 +0400
| 
|     Updated multiclass machine base class
| 
| M	src/shogun/machine/multiclass/MulticlassMachine.cpp
| M	src/shogun/machine/multiclass/MulticlassMachine.h
|  
* commit 9c2a79a476f6356ff78bd039393c82a9153ab3ec
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Mar 8 17:29:52 2012 +0400
| 
|     Added bias usage capability for crammer-singer liblinear
| 
| M	src/shogun/classifier/svm/MulticlassLibLinear.cpp
|  
* commit 99d05d08f75443276c0931ed237741e3b1c86dc2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Mar 8 17:29:52 2012 +0400
| 
|     Added bias usage capability for crammer-singer liblinear
| 
| M	src/shogun/classifier/svm/MulticlassLibLinear.cpp
| M	src/shogun/classifier/svm/MulticlassLibLinear.h
| M	src/shogun/classifier/svm/SVM_linear.cpp
|  
* commit c49615e59f2619a3991eca0536719a2253fcf859
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 6 11:27:39 2012 +0100
| 
|     fix latex error in documentation (x_i not \x_i)
| 
| M	src/shogun/distance/MahalanobisDistance.h
|  
* commit a47b9ca49f640c4cf75c5bda9b33d3b66d166b7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 5 09:04:50 2012 +0100
| 
|     Mahalanobis distance fixes
|     
|     - use mean of all examples
|     - improve documentation
|     - serialization support
| 
| M	src/shogun/distance/MahalanobisDistance.cpp
| M	src/shogun/distance/MahalanobisDistance.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
|  
* commit ad696b4eedbbd375c79c4b81017ac2e4e3c49b43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 4 09:35:30 2012 +0100
| 
|     fix minor documentation error
| 
| M	src/shogun/features/DotFeatures.h
|    
*   commit c1dc0027a03063ab4c17802df25739e146bbf8ed
|\  Merge: 99c613c 56db24c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Mar 4 00:34:48 2012 -0800
| | 
| |     Merge pull request #378 from iglesias/master
| |     
| |     Mahalanobis distance example
| |   
| * commit 56db24cf1ed412b9cd50472db423ed21312e4f48
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Mar 3 18:50:04 2012 +0100
| | 
| |     ~ equal_features to use_mean attribute, more freedom to choose type of difference
| | 
| | M	src/shogun/distance/MahalanobisDistance.cpp
| | M	src/shogun/distance/MahalanobisDistance.h
| |   
| * commit b9578a1fb09cae4306337d42153a40dfb185b1e8
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu Mar 1 12:50:53 2012 +0100
| | 
| |     ~ mahalanobis example python_modular
| | 
| | M	examples/undocumented/python_modular/distance_mahalanobis_modular.py
| |   
| * commit 5cc46b9a8c72aa906de54576973c4a9481c62dd5
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu Mar 1 12:49:52 2012 +0100
| | 
| |     ~ better doc
| | 
| | M	src/shogun/distance/MahalanobisDistance.h
| |   
| * commit 739c53e04764db609eb5cafae7ef01a8f961b16b
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Thu Mar 1 12:39:05 2012 +0100
| | 
| |     * couple a bug fixes
| | 
| | M	src/shogun/distance/MahalanobisDistance.cpp
| |     
| *   commit 9dd34cde1cf2045468197c82436134b6a024ab06
| |\  Merge: 925d58d 33a2d40
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Thu Mar 1 11:51:28 2012 +0100
| | | 
| | |     Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |    
| * | commit 925d58d574243b0e16663799041257e6278f3ee6
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Thu Mar 1 11:49:20 2012 +0100
| | | 
| | |     ~ MahalanobisDistance to use the covariance of a joint distribution
| | | 
| | | M	src/shogun/distance/MahalanobisDistance.cpp
| | | M	src/shogun/distance/MahalanobisDistance.h
| | |    
| * | commit e94519f81140d6d44105db9152ca7444c7098d34
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Thu Mar 1 11:47:49 2012 +0100
| | | 
| | |     + is_equal method
| | | 
| | | M	src/shogun/features/SimpleFeatures.cpp
| | | M	src/shogun/features/SimpleFeatures.h
| | |    
| * | commit 619c79b69d4c48b015c4c2f1a1c395dbcffa3f1f
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Wed Feb 29 20:34:07 2012 +0100
| | | 
| | |     + function to compute covariance of 2 CDotFeatures
| | | 
| | | M	src/shogun/features/DotFeatures.cpp
| | | M	src/shogun/features/DotFeatures.h
| | |    
| * | commit 3bcf3a76d5f6ab00b4d8966d6a7c51462cf84402
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Mon Feb 27 16:38:58 2012 +0100
| | | 
| | |     + non-graphical example of MahalanobisDistance use for python_modular
| | | 
| | | A	examples/undocumented/python_modular/distance_mahalanobis_modular.py
| | |    
* | | commit 99c613c26a4271b036b506aab9087a1ab61c0c52
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Mar 4 03:29:50 2012 +0400
| | | 
| | |     Introduced rejection strategies for MC machines
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Classifier_includes.i
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/machine/multiclass/MulticlassMachine.cpp
| | | M	src/shogun/machine/multiclass/MulticlassMachine.h
| | | A	src/shogun/machine/multiclass/RejectionStrategy.h
| | |    
* | | commit 1542f933e4f723f34d3daade132a1a8969d73773
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Mar 4 02:12:10 2012 +0400
| | | 
| | |     Moved multiclass machines to subfolder
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Classifier_includes.i
| | | M	src/shogun/classifier/svm/MulticlassLibLinear.h
| | | D	src/shogun/machine/KernelMulticlassMachine.h
| | | D	src/shogun/machine/LinearMulticlassMachine.h
| | | D	src/shogun/machine/MulticlassMachine.cpp
| | | D	src/shogun/machine/MulticlassMachine.h
| | | A	src/shogun/machine/multiclass/KernelMulticlassMachine.h
| | | A	src/shogun/machine/multiclass/LinearMulticlassMachine.h
| | | A	src/shogun/machine/multiclass/MulticlassMachine.cpp
| | | A	src/shogun/machine/multiclass/MulticlassMachine.h
| | |    
* | | commit 2aaf53287d863628ad90cdfe039440e04a9ff986
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Mar 4 00:20:26 2012 +0400
| | | 
| | |     Introduced multiclass LibLinear
| | | 
| | | A	examples/undocumented/python_modular/classifier_multiclassliblinear_modular.py
| | | A	examples/undocumented/python_modular/classifier_multiclassmachine_modular.py
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Classifier_includes.i
| | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | M	src/shogun/classifier/svm/LibLinear.h
| | | A	src/shogun/classifier/svm/MulticlassLibLinear.cpp
| | | A	src/shogun/classifier/svm/MulticlassLibLinear.h
| | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | M	src/shogun/machine/LinearMulticlassMachine.h
| | |    
* | | commit b5356e68d4938d338b681fa77a6eea0efa7c2999
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Mar 3 02:18:07 2012 +0400
| | | 
| | |     Updated NEWS
| | | 
| | | M	src/NEWS
| | |    
* | | commit ab03013e99d6659013e38776231678da1d32ede2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Mar 1 21:16:27 2012 +0100
| | | 
| | |     fix make linecount
| | | 
| | | M	src/Makefile
| | |    
* | | commit a1e8540b3319f2c7f3768131efed647dd2258c67
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Mar 1 09:26:22 2012 +0100
| | | 
| | |     whitespace fix
| | | 
| | | M	src/shogun/clustering/KMeans.cpp
| | |    
* | | commit fac86c579fade7cc7b6e7ea670adca358ef1975b
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Thu Mar 1 09:25:56 2012 +0100
| |   
| |       mark also cluster centers
| |   
| |   M	examples/undocumented/python_modular/graphical/interactive_clustering_demo.py
| |     
* |   commit 33a2d40d3bc9fd908d4fe6c25d22e04a0b127f68
|\ \  Merge: d4083af 0af022e
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Feb 27 17:48:45 2012 +0100
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 0af022ed9f2ba519020f418139778e959dba4be6
| |\  Merge: f6b79f1 dd2509b
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Feb 27 02:49:17 2012 -0800
| | | 
| | |     Merge pull request #377 from iglesias/master
| | |     
| | |     Mahalanobis distance
| | |    
| | * commit dd2509b251c0af26252f96d613f35413326a41a2
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Mon Feb 27 11:43:52 2012 +0100
| | | 
| | |     + v destroyed
| | | 
| | | M	src/shogun/distance/MahalanobisDistance.cpp
| | |    
| | * commit 7adfc8eab8ba70fc7f22193066fbfa501c86aa43
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Mon Feb 27 10:09:32 2012 +0100
| | | 
| | |     ~ mean and cov of lhs features to class member and their computations to init method
| | | 
| | | M	src/shogun/distance/MahalanobisDistance.cpp
| | | M	src/shogun/distance/MahalanobisDistance.h
| | |    
| | * commit bb420fc212b1dca806a153dc6725c360cb12fa27
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Feb 26 22:47:30 2012 +0100
| | | 
| | |     * identation
| | | 
| | | M	src/shogun/distance/Distance.h
| | |    
| | * commit 568945de4c12ee3334772566413cce31d5598479
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Feb 26 22:39:43 2012 +0100
| | | 
| | |     ~ better doc
| | | 
| | | M	src/shogun/distance/MahalanobisDistance.h
| | |    
| | * commit 8334ef4f817b30d50eb2889d89e14cf9c60ed6eb
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Feb 26 22:05:16 2012 +0100
| | | 
| | |     + MahalanobisDistance in aux files
| | | 
| | | M	src/interfaces/modular/Distance.i
| | | M	src/interfaces/modular/Distance_includes.i
| | | M	src/shogun/distance/Distance.h
| | |    
| | * commit a700fd0d0219b073d00973fb8516ca126d3a1698
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sun Feb 26 22:03:51 2012 +0100
| | | 
| | |     + MahalanobisDistance implementation
| | | 
| | | A	src/shogun/distance/MahalanobisDistance.cpp
| | |    
| | * commit eb678c20504a9ce0ebde743c5509132ec99655f3
| | | Author: iglesias <fernando.iglesiasg@gmail.com>
| | | Date:   Sat Feb 25 00:18:43 2012 +0100
| | | 
| | |     + interface for Mahalanobis distance
| | | 
| | | A	src/shogun/distance/MahalanobisDistance.h
| | |      
* | |   commit d4083afd7f3d4ad131c64514970f470610f5af23
|\ \ \  Merge: 3b1a84a f6b79f1
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Mon Feb 27 09:19:52 2012 +0100
| | |   
| | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit f6b79f1baeb6ca09a5c1eb18df23a429c2107a45
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Feb 27 02:34:32 2012 +0400
| | | 
| | |     Hotfix for MC machines
| | | 
| | | M	src/shogun/machine/KernelMulticlassMachine.h
| | | M	src/shogun/machine/LinearMulticlassMachine.h
| | |    
| * | commit a3c38e58304258d46ff56de68b117c9e5f3f735f
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Mon Feb 27 02:12:37 2012 +0400
| |   
| |       Introduced multiclass generics
| |   
| |   M	src/interfaces/modular/Classifier.i
| |   M	src/interfaces/modular/Classifier_includes.i
| |   M	src/shogun/machine/KernelMachine.cpp
| |   M	src/shogun/machine/KernelMachine.h
| |   A	src/shogun/machine/KernelMulticlassMachine.h
| |   M	src/shogun/machine/LinearMachine.cpp
| |   M	src/shogun/machine/LinearMachine.h
| |   A	src/shogun/machine/LinearMulticlassMachine.h
| |   A	src/shogun/machine/MulticlassMachine.cpp
| |   A	src/shogun/machine/MulticlassMachine.h
| |   
* | commit 3b1a84a07ddbba83df4c1881f33efd15ae82a377
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Feb 23 16:56:50 2012 +0100
|   
|       add graphical (interactive) toy examples for kmeans clustering
|   
|   A	examples/undocumented/python_modular/graphical/cluster_kmeans.py
|   A	examples/undocumented/python_modular/graphical/interactive_clustering_demo.py
|  
* commit 48a537508332367b4096a12ee96d8ce5611bef63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 23 16:05:37 2012 +0100
| 
|     add graphical support vector regression example add myself to svm/svr example authors
| 
| M	examples/undocumented/python_modular/graphical/interactive_svm_demo.py
| A	examples/undocumented/python_modular/graphical/interactive_svr_demo.py
|  
* commit 742bed4edff84b2c948c38038713d28c8866c2dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 21 11:44:57 2012 +0100
| 
|     fix minor doxygen undocumented warning
| 
| M	src/shogun/kernel/CustomKernel.h
|  
* commit ddf8707a4a6af55ca7b7a24283bb7f6adcd67193
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Feb 18 13:14:16 2012 +0400
| 
|     Fixed a couple of warnings
| 
| M	src/shogun/evaluation/CrossValidation.h
| M	src/shogun/kernel/CustomKernel.h
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/machine/Machine.h
| M	src/shogun/preprocessor/HomogeneousKernelMap.h
|  
* commit 8480b7ffd865a5168b8b347cd629124265ef02a2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Feb 18 00:29:00 2012 +0400
| 
|     Added some doc for #376
| 
| M	src/shogun/preprocessor/HomogeneousKernelMap.h
|    
*   commit b95359d3bbf29214de343295b7aac7fda9b9afd3
|\  Merge: 425500a 7710f7f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Feb 18 00:20:23 2012 +0400
| | 
| |     Merge branch 'master' of https://github.com/vigsterkr/shogun
| |   
| * commit 7710f7f5bc660a4bee6f8a9e09f806f9b5a2d2f7
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Fri Feb 17 21:13:04 2012 +0100
| | 
| |     HKM: fix variable init in case of setter calls
| |     And trying to comply with shogun's coding style
| | 
| | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | M	src/shogun/preprocessor/HomogeneousKernelMap.h
| |     
* |   commit 425500adb409cb025eeab0d76c82f77f2d3a2f47
|\ \  Merge: e7946bb b4a03d0
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/|   Date:   Fri Feb 17 21:52:56 2012 +0400
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit b4a03d073edfcc261249bc5bbdb83caa2fdf5a37
| |\  Merge: dd3ca9f 9896584
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Feb 17 06:36:35 2012 -0800
| | | 
| | |     Merge pull request #374 from vigsterkr/master
| | |     
| | |     Add Homogeneous Kernel Mapping preprocessor
| | |    
| * | commit dd3ca9ffea55b3fd1f8632bdfa829c42bf998a4d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Feb 17 15:26:11 2012 +0100
| | | 
| | |     fix PI -> M_PI
| | | 
| | | M	src/shogun/mathematics/Math.cpp
| | |    
* | | commit e7946bb5284d920dc1d8a235418def6c88f55492
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Feb 17 16:05:05 2012 +0100
| | | 
| | |     HKM: set reference in apply_to_feature_matrix func
| | |     Althouth the reference for the new feature matrix has been returned
| | |     it hasn't been set for the supplied SimpleFeatures class.
| | | 
| | | M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | |    
* | | commit a7f46ea3e5bfd5c93c2cac222a3649a857c8ba82
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
|/|   Date:   Fri Feb 17 15:44:16 2012 +0100
| |   
| |       Remove memory allocation check
| |       SG_MALLOC checks itself if the memory allocation was successful
| |       or not
| |   
| |   M	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| |   
* | commit 989658433acc4323cc27b0172bbf16396b2fad38
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Fri Feb 17 14:50:15 2012 +0100
| | 
| |     Add Homogeneous Kernel Mapping preprocessor
| | 
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | A	src/shogun/preprocessor/HomogeneousKernelMap.cpp
| | A	src/shogun/preprocessor/HomogeneousKernelMap.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit 8d46f4472b377261102c5bc634e5a8d86bdee326
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Fri Feb 17 09:46:31 2012 +0100
| | 
| |     Add CMath::cos function
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 067f55b4c8766e52ad234242605e8e6a5c3857ea
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Fri Feb 17 09:44:17 2012 +0100
| | 
| |     Fix CMath::PI constant value
| | 
| | M	src/shogun/mathematics/Math.cpp
| |     
* |   commit a5781078c858d7c8fff403d4e289190b215d2689
|\ \  Merge: 97c1b09 a99a16f
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Thu Feb 16 09:45:29 2012 +0100
| |   
| |       Merge remote-tracking branch 'shogun/master'
| |   
| * commit a99a16f5a18ab713f469e7b75d2d198e6c9afaf3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Feb 16 09:23:54 2012 +0100
| | 
| |     fix missing rename KRR -> KernelRidgeRegression
| | 
| | M	examples/undocumented/octave_modular/regression_kernel_ridge_modular.m
| |     
| *   commit e5d45a81345ee4044c083340d3ad4ec5b98e6aba
| |\  Merge: 2d8230d 1d8eca8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Feb 15 18:27:58 2012 -0800
| | | 
| | |     Merge pull request #373 from karlnapf/master
| | |     
| | |     a bunch of improvements
| | |    
| | * commit 1d8eca84930323f1a0d96c0567388397f273b75e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 17:16:54 2012 +0000
| | | 
| | |     migration of new parameters
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | |    
| | * commit 6fc06a91b0e1de0b6dd89a646278b637d4c9ac7d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 17:12:45 2012 +0000
| | | 
| | |     added proper handling of kernel matrices from other CustomKernels
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| | * commit a0ee0bb9d292bb6e701a7c5b0d5790f7615821bc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:42:32 2012 +0000
| | | 
| | |     removed debug print
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | |    
| | * commit 7e9829a76d6a009845ea4bdd524e01da78e709d3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:31:41 2012 +0000
| | | 
| | |     minor changes
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/evaluation/CrossValidation.h
| | |    
| | * commit 4be9a044a432c8a698bbedf7a43f6ef302cf2f4c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:20:30 2012 +0000
| | | 
| | |     added todo is class documentation
| | | 
| | | M	src/shogun/evaluation/CrossValidation.h
| | | M	src/shogun/kernel/CustomKernel.h
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit 0f65fc728c64626e0a22bbf969f3d59963869700
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:20:14 2012 +0000
| | | 
| | |     changed ref order
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit a78cf2403823d3c571f92638f955d0502d05194e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:19:59 2012 +0000
| | | 
| | |     cleanups and bugfixes
| | | 
| | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | |    
| | * commit 70a05eb0d1121617684b94f026ae96e8ca894156
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:17:43 2012 +0000
| | | 
| | |     added example for libsvm multiclass
| | | 
| | | A	examples/undocumented/libshogun/classifier_libsvmmulticlass.cpp
| | |    
| | * commit 429cd43261548330bfcabf2f3dbd21ddf84dd6bd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 16:17:30 2012 +0000
| | | 
| | |     grouped classifier examples and added  libsvmmulticlass example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| | * commit 14f06d7d72a3fc413d032b402443fb6691f1f449
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:11:45 2012 +0000
| | | 
| | |     cross validation now automatically locks (may be deacivated)
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/evaluation/CrossValidation.h
| | |    
| | * commit 9e130d250c55622daf2dbde49971cc2df5c28df7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:11:16 2012 +0000
| | | 
| | |     minor changes
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit e19f92bb5815eb86fe802552d7e1397082181ed8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:11:05 2012 +0000
| | | 
| | |     introduced get_float32_kernel_matrix and usage in Constructor from another CustomKernel
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| | * commit 833dd6e0575d8aa877bdae14cc070959ba5d79cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:10:30 2012 +0000
| | | 
| | |     added supports locking method
| | | 
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit e4e5a3e7238214d6476f68edc5a5297a46988f8b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:10:10 2012 +0000
| | | 
| | |     grid search does not do locking anymore (CrossValidation now does)
| | | 
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit c5d1002a09e497ebf8a6f58a437bbdcbfdefe413
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:09:51 2012 +0000
| | | 
| | |     interface changes
| | | 
| | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | M	src/shogun/modelselection/ModelSelection.h
| | |    
| | * commit 32cf2d972f6f525ad9d013731f506b1248227cc8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 15:00:27 2012 +0000
| | | 
| | |     applied interface changes
| | | 
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| | |    
| | * commit 4efcf945b62a7f8e986cd2336860e93a3635e611
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 15 14:56:16 2012 +0000
| | | 
| | |     updated examples because manual locking is not needed anymore
| | | 
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | |    
| | * commit 774536f0f5710d63503a96cd57cec3a99ed1ce2d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 22:44:50 2012 +0000
| | | 
| | |     applied interface changes
| | | 
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| | |    
| | * commit 933a81c03e812fd4cdd29e2726b18f411f8209d1
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 22:39:23 2012 +0000
| | | 
| | |     applied interface changes
| | | 
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit 80e9704cfdaafbb62b11a722e3b1e08dadf0f3cf
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 22:36:56 2012 +0000
| | | 
| | |     applied interface changes
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | |    
| | * commit 370d28da1bdc2f385e7511160b0562fbbad5e309
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 22:35:42 2012 +0000
| | | 
| | |     applied interface changes
| | | 
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | |    
| | * commit 32a760a3f4eef36e107df403932dac3b7eedc158
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 21:07:10 2012 +0000
| | | 
| | |     fixed uninitialized memory error
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit d686661959178384bb48d38facf45b9a04608e1d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 17:32:47 2012 +0000
| | | 
| | |     -changed signature of data_lock
| | |     -parallelized apply_lock with some minor adjustments to the pthread strucure of apply()
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit 7f0be46ed05c392c677581a3b02c06843a95d83e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 17:32:08 2012 +0000
| | | 
| | |     changed signature of data_lock
| | |     added assertion for labels
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | |    
| | * commit 2bf560646561ed7ebf576d6cba08345a191a98b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 17:31:49 2012 +0000
| | | 
| | |     changed signature of data_lock
| | | 
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/Machine.h
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit 2683ae177942ef3a7a2d2c55336d70ec4efea2eb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 17:31:05 2012 +0000
| | | 
| | |     init method will use dummy features
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | |    
| | * commit 64ef97ff3b7087453b998d1ce96e58218f0c8915
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Feb 13 17:30:49 2012 +0000
| |   
| |       cleanup and new constructor when no features are used (custom kernel)
| |   
| |   M	src/shogun/evaluation/CrossValidation.cpp
| |   M	src/shogun/evaluation/CrossValidation.h
| |     
* |   commit 97c1b09dd3a5b9036cc2935613f29ad89e2cb446
|\ \  Merge: a7a5e04 2d8230d
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Wed Feb 15 19:12:32 2012 +0100
| |   
| |       Merge remote-tracking branch 'shogun/master'
| |   
| * commit 2d8230de57651dd845ce78a09800a35215a1a46a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Feb 15 16:22:38 2012 +0100
| | 
| |     remove unused gaussian kernel from example
| | 
| | M	examples/undocumented/python_modular/regression_linear_ridge_modular.py
| |   
| * commit db04338d1d8d7bbb1c518698ecb444f938ed3658
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Feb 14 16:46:55 2012 +0100
| | 
| |     add linear least squares and ridge regression
| |     
| |     This add linear ridge regression and a convenience class
| |     CLeastSquaresRegression calling CLinearRidgeRegression with
| |     regularization parameter tau=0. To not cause confusion KRR is
| |     renamed to KernelRidgeRegression throughout examples/code.
| | 
| | M	examples/undocumented/cmdline_static/regression_krr.sg
| | M	examples/undocumented/csharp_modular/regression_krr_modular.cs
| | M	examples/undocumented/java_modular/regression_krr_modular.java
| | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | M	examples/undocumented/lua_modular/regression_krr_modular.lua
| | M	examples/undocumented/matlab_and_octave/regression_krr.m
| | A	examples/undocumented/octave_modular/regression_kernel_ridge_modular.m
| | D	examples/undocumented/octave_modular/regression_krr_modular.m
| | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| | A	examples/undocumented/python_modular/graphical/kernel_ridge_regression.py
| | A	examples/undocumented/python_modular/graphical/kernel_ridge_regression_sinc.py
| | D	examples/undocumented/python_modular/graphical/krr.py
| | D	examples/undocumented/python_modular/graphical/krr_sinc.py
| | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | A	examples/undocumented/python_modular/regression_kernel_ridge_modular.py
| | D	examples/undocumented/python_modular/regression_krr_modular.py
| | A	examples/undocumented/python_modular/regression_least_squares_modular.py
| | A	examples/undocumented/python_modular/regression_linear_ridge_modular.py
| | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | M	src/interfaces/modular/Regression.i
| | M	src/interfaces/modular/Regression_includes.i
| | M	src/shogun/machine/Machine.h
| | D	src/shogun/regression/KRR.cpp
| | D	src/shogun/regression/KRR.h
| | A	src/shogun/regression/KernelRidgeRegression.cpp
| | A	src/shogun/regression/KernelRidgeRegression.h
| | A	src/shogun/regression/LeastSquaresRegression.cpp
| | A	src/shogun/regression/LeastSquaresRegression.h
| | A	src/shogun/regression/LinearRidgeRegression.cpp
| | A	src/shogun/regression/LinearRidgeRegression.h
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/SGInterface.cpp
| |     
* |   commit a7a5e04d093f0f5cbcc47e6bfd5f2a0f88c7cb24
|\ \  Merge: 9f9abf7 3baaddb
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Tue Feb 14 14:32:57 2012 +0100
| |   
| |       Merge remote-tracking branch 'shogun/master'
| |     
| *   commit 3baaddba8ee7dded581e9b0eb00311bea346baf6
| |\  Merge: fcbf3fd 7e5bce7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Feb 14 05:20:53 2012 -0800
| | | 
| | |     Merge pull request #367 from karlnapf/master
| | |     
| | |     A draft for training on fixed kernel matrices/data in general
| | |    
| | * commit 7e5bce7323d0a771c1d4471fbe562c297b3c45de
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:55:46 2012 +0000
| | | 
| | |     added print
| | | 
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit 76b188b06b0b588ea71a7fd2beae034f67f54ea4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:55:35 2012 +0000
| | | 
| | |     added apply_locked
| | |     typo
| | | 
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit c9b91bda19a6aa5eec8337c8c138a13521c9510f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:55:17 2012 +0000
| | | 
| | |     added apply_locked
| | | 
| | | M	src/shogun/machine/KernelMachine.h
| | |    
| | * commit ac2ebcf494cd4718ddcd3db593c687ba7ac085b2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:54:59 2012 +0000
| | | 
| | |     usage of check for is_locked
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit c958e4ee9463ab82302d5503c0a051b9beed8b9b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:54:37 2012 +0000
| | | 
| | |     added get_kernel_matrix method to allow to create a CustomKernel from a CustomKernel without creating a copy of hte kernel matrix (get_kernel_matrix is called in constructor)
| | | 
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| | * commit 43725fe33333c5db218e6aac995e0a00898a4413
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:53:58 2012 +0000
| | | 
| | |     free kernel matrix only if there is one specified
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | |    
| | * commit 639bc3e7ad9c681f5cffd92e4d57a2067ad2e67a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:53:44 2012 +0000
| | | 
| | |     -replaced error by warning for confidence intervals
| | |     -usage of apply_locked
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 4fe1c1074ae0af0fb9b36f6585d27c625da51409
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:53:14 2012 +0000
| | | 
| | |     code cleanup
| | | 
| | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | |    
| | * commit 71ae3a4c5a45d7a6c2aa43ec375af3cdc4b47f26
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:53:01 2012 +0000
| | | 
| | |     another important bugfix where class decision was bases upon uninitialised data
| | | 
| | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | |    
| | * commit f3edb840c415a7c908dcf1f9e91daf6bac8c1747
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 13 08:50:03 2012 +0000
| | | 
| | |     introduced apply_locked
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | |    
| | * commit 6822c409c8c4657f1eafbed6cbd23de1d455d0e5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Feb 11 19:51:40 2012 +0000
| | | 
| | |     fix to make apply(int32_t) work
| | | 
| | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | |    
| | * commit 35fed738303df5c683eb620a9ab6c54216a79b9a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Feb 11 19:51:22 2012 +0000
| | | 
| | |     typo
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 0dd5e99af2a4de3b3d0d912c7061c13c5de07568
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Feb 11 19:50:12 2012 +0000
| | | 
| | |     changed error to warning
| | | 
| | | M	src/shogun/evaluation/MeanSquaredLogError.cpp
| | |    
| | * commit 05601825fb5f5a695a9ff44d817db0494f70f639
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Feb 11 19:49:53 2012 +0000
| | | 
| | |     aded priting of states
| | | 
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit 9b109b883568413a9c39dfe25e336a94721c6716
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Feb 11 19:49:45 2012 +0000
| | | 
| | |     assertion and memleak fix
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit d83fa769171c75e5e35717c3d94910eef6f88f6e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:55:07 2012 +0000
| | | 
| | |     applied data_lock to examples
| | | 
| | | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| | |    
| | * commit 847473207e35271f214ff6967ec6d37691e3ee7a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:46:40 2012 +0000
| | | 
| | |     fixed mem-leak
| | | 
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit 0efca2ce6acbaa39c570d999b1ad4f6b91736ed1
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:42:40 2012 +0000
| | | 
| | |     updated usage of data_lock
| | | 
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | |    
| | * commit 8e13f1d1a7761619021316858e94986c547fb178
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:40:58 2012 +0000
| | | 
| | |     update data_lock usage
| | | 
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit 4dadfc26ab331306f4f75128deaf11b488432323
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:40:24 2012 +0000
| | | 
| | |     update data_lock usage
| | | 
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | |    
| | * commit 7a7dececaa7ef09b53ce972981200808880bc6b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:36:42 2012 +0000
| | | 
| | |     usage of data lock
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | |    
| | * commit e9e95baee5f4b95db2519baae6f6620cd09b12b4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:36:27 2012 +0000
| | | 
| | |     added option to model selection to lock data before
| | | 
| | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | M	src/shogun/modelselection/ModelSelection.h
| | |    
| | * commit b62124c4d256eb78475530356d3b7f0a5bf430db
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:36:12 2012 +0000
| | | 
| | |     data lock  method now takes features and labels and initialises the machine with these
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit 8ce5fb44b822f374ad051d84d1524b70efacfa82
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:35:40 2012 +0000
| | | 
| | |     data lock  method now takes features and labels and initialises the machine with these
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMachine.h
| | |    
| | * commit 23d3b4f383c06a347c5863fdafd313693d0fec26
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 17:35:16 2012 +0000
| | | 
| | |     added getter for features and labels
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | | M	src/shogun/evaluation/CrossValidation.h
| | |    
| | * commit bf0103e0d20286e0b7bb8d304486424055122831
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:58:38 2012 +0000
| | | 
| | |     make use of precomputed kernel matrices
| | | 
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| | | M	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| | |    
| | * commit a1d9063a4bfa551fa771d6a4999f4d3dc2fc5c8a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:51:15 2012 +0000
| | | 
| | |     added test/example to compare locked and unlocked cross-validation
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/evaluation_cross_validation_locked_comparison.cpp
| | |    
| | * commit 2ae42e3abbe23f687572121c90fe4b42e15de212
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:50:55 2012 +0000
| | | 
| | |     changes to make example clearer
| | | 
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit a7c732d5e7bdc572f17047dee4f0b06cb1413659
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:50:37 2012 +0000
| | | 
| | |     changed visibility of data_lock/unlock and added flag for it
| | | 
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit 7df238fcc7ac816db807e2084f1d401bcfd1571e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:50:14 2012 +0000
| | | 
| | |     added labels reference backup and data_locked flag
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | |    
| | * commit 5c29189be58e12195812e8693e22fae9acfc8b25
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:49:42 2012 +0000
| | | 
| | |     moved visibility of data_lock/unlock method
| | | 
| | | M	src/shogun/machine/KernelMachine.h
| | |    
| | * commit a369adf4fd36a19effc8df263e6dd999e56c39ab
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:49:29 2012 +0000
| | | 
| | |     running changes
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | |    
| | * commit 651e7d5f81eafd0111a7ad83ef886e249ba3114b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:48:42 2012 +0000
| | | 
| | |     added subset handling for custom kernel (needed for locked model training)
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| | * commit 28e553a1ea87b8671768586ecb2e76eb1bac59b5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:48:17 2012 +0000
| | | 
| | |     added has_subset
| | | 
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | |    
| | * commit 651946617c03a8dbdf4492ff38f136405f9b7a51
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:48:03 2012 +0000
| | | 
| | |     made subset index converision method inline
| | | 
| | | M	src/shogun/features/Features.cpp
| | | M	src/shogun/features/Features.h
| | |    
| | * commit d894b9f0cc55754f79aba3d15eeb97b496d6f10f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Feb 8 16:47:29 2012 +0000
| | | 
| | |     added different handling for locked trainings
| | | 
| | | M	src/shogun/evaluation/CrossValidation.cpp
| | |    
| | * commit fa5f73aebaeed475e9b65c2f3370930ff1cfc7b0
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 22:32:14 2012 +0000
| | | 
| | |     apply to all data instead of only training indices
| | | 
| | | M	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit 741d844138a125bba127e725806b9919c6b0bc5c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 22:23:42 2012 +0000
| | | 
| | |     moved backup labels to CMachine
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit 1d96f816c8d8d83dca75ec445e8c6890054b4af5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 22:04:47 2012 +0000
| | | 
| | |     added my name in copyright
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMachine.h
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit dfed6be8a901840f09211a014c49e5fa45f24279
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 22:04:16 2012 +0000
| | | 
| | |     added example/test for train_locked
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/kernel_machine_train_locked.cpp
| | |    
| | * commit e1e43cb5ec196ffb096f2169e06ea56c094efbc5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 22:00:24 2012 +0000
| | | 
| | |     added possibility to lock current data and then train on locked data (may for example be used for training on fixed kernel matrices)
| | | 
| | | M	src/shogun/machine/Machine.cpp
| | | M	src/shogun/machine/Machine.h
| | |    
| | * commit f12817f3fcca3778b90c15fdc81de1bab88ad87c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 21:58:47 2012 +0000
| | | 
| | |     proof of concept for training on fixed kernel matrices
| | | 
| | | M	src/shogun/machine/KernelMachine.cpp
| | | M	src/shogun/machine/KernelMachine.h
| | |    
| | * commit 3e9db485eb4b86f2f0fe7dd8cb4242f43e006ff3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 21:58:03 2012 +0000
| | | 
| | |     added method to get a copy of a set of kernel matrix rows as float32
| | | 
| | | M	src/shogun/kernel/CustomKernel.cpp
| | | M	src/shogun/kernel/CustomKernel.h
| | |    
| | * commit 29df74ef1adbc146fb5dda18edd809974ed3d359
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Feb 7 21:57:40 2012 +0000
| | | 
| | |     multiclass svm should remember the svs, all for now
| | | 
| | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | |    
| | * commit 7adecdb21525375734e33b763deb21572f2e9586
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 6 16:05:57 2012 +0000
| | | 
| | |     small fix
| | | 
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | |    
| | * commit 33e1a7a7d9f2c4be9fde8307bbc3865c55228932
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Feb 6 15:41:53 2012 +0000
| | | 
| | |     some minor fixes
| | | 
| | | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | |    
| * | commit fcbf3fd75b150b10f9e97167412c54a35f80c23c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Feb 14 11:45:55 2012 +0100
| | | 
| | |     fix warning in multiclass accuracy
| | | 
| | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | M	src/shogun/evaluation/MulticlassAccuracy.h
| | |    
| * | commit 7da38f1da0273b01bddf146fdb73b315d8013ecc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Feb 14 11:16:32 2012 +0100
| | | 
| | |     Remove m_num_classes from CLabels and change get_num_(unique,)classes()
| | |     
| | |     This adds a more efficient mechanism to determine the number of classes.
| | |     Instead of adding labels to a set, perform a sort + unique count. This
| | |     fixes an issue when using labels for regression (and crazily slow
| | |     behaviour).
| | | 
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | |    
| * | commit e7c6e959bf946a8697991ed96318be7e46062e98
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Feb 14 11:15:48 2012 +0100
| | | 
| | |     introduce clone() function to SGVector
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit 4190f4f308c7e5f7d40dcc888e3d72b536b43dd6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Tue Feb 14 11:15:11 2012 +0100
| |   
| |       minor source code beautification
| |   
| |   M	src/shogun/mathematics/Math.h
| |   
* | commit 9f9abf758107dd78eca85555fb82071035c00e06
| | Author: Viktor Gal <viktor.gal@maeth.com>
| | Date:   Mon Feb 13 15:09:31 2012 +0100
| | 
| |     Fix beta parameter passing via constructor in HIK
| | 
| | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| |     
* |   commit 7312f6481d6cc0e95d8d590f9789720cd2423771
|\ \  Merge: a1ef98f 9d92ffa
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Mon Feb 13 10:51:22 2012 +0100
| |   
| |       Merge remote-tracking branch 'shogun/master'
| |     
| *   commit 9d92ffaa7246a50df270483a9acfdb12d41393f4
| |\  Merge: cf94051 c6724bc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Feb 13 00:39:37 2012 -0800
| | | 
| | |     Merge pull request #371 from lianos/master
| | |     
| | |     This is a 1/2-way fix for the install procedure for the r_static interface.
| | |    
| | * commit c6724bcf6b44027f8cb8a94eb4050102b1c151cd
| |/  Author: Steve Lianoglou <slianoglou@gmail.com>
| |   Date:   Sat Feb 11 18:09:00 2012 -0500
| |   
| |       1/2-way fix for r_static install procedure.
| |       
| |       * The structure of the package.rds file has been broken for some time,
| |         this fixes it by adding a $DESCRIPTION['Built'] character vector. It
| |         seems that this has been required since (I believe, at least) R 2.13.
| |       
| |       * Cleaned up code to set RVERSION, PLATFORM, and OSTYPE. The current
| |         way to build RVERSION is improved and allows for sg to be built against
| |         a self compiled version of R-devel
| |       
| |       * Current R-devel (upcoming R-2.15) has removed the .saveRDS function. Users
| |         are supposed to use the saveRDS function instead, which has also been
| |         available since (at least) R 2.13.
| |       
| |       * Bumped up minimum required version of R to 2.13
| |       
| |       A fix is still required to move the build sg.so library into an
| |       architecture-specific folder in sg/libs, eg. sg/libs/x86_64
| |   
| |   M	src/.r-install.sh
| |   
* | commit a1ef98ff674f90e80d1c9464dfb0c948b8c1e5d0
|/  Author: Viktor Gal <viktor.gal@maeth.com>
|   Date:   Sun Feb 12 15:28:40 2012 +0100
|   
|       Optimizing the Jensen-Shannon kernel computation
|       Instead of doing two divisions switch to one multiplication
|   
|   M	src/shogun/kernel/JensenShannonKernel.cpp
|    
*   commit cf9405115c8554c89ecf2d83807b3afd27c800d4
|\  Merge: 263c5cd 93a9e82
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Feb 11 17:02:59 2012 +0400
| | 
| |     Merge https://github.com/iglesias/shogun
| |   
| * commit 93a9e827711cd3ad4e5ec9895b49fa4c1cf3c2b0
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 12:30:34 2012 +0100
| | 
| |     fixed identation
| | 
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| |   
| * commit 4a42a8e689e6ba498643cf39a304b79fa7d1986c
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:52:13 2012 +0100
| | 
| |     minor changes in the data structures
| | 
| | M	src/shogun/mathematics/Cplex.cpp
| |   
| * commit 17add2fb5091968b38edfe3edc924afe3babb2be
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:45:49 2012 +0100
| | 
| |     change CLinearClassifier to CLinearMachine
| | 
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/LPM.h
| |   
| * commit 17424fc2482af8dfb54bd1281cf1ac215868ed04
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:44:24 2012 +0100
| | 
| |     change CLinearClassifier to CLinearMachine
| | 
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPBoost.h
| |   
| * commit f01f59839b8da8110c3896fc698625298ffac30e
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:42:43 2012 +0100
| | 
| |     minor fixes updating data structures
| | 
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| |   
| * commit 23da268b2a90dd6bf9d707280b04e3490691f1d2
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:37:44 2012 +0100
| | 
| |     change CLinearClassifier to CLinearMachine
| | 
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/SubGradientLPM.h
| |   
| * commit 2bf751c38170339b3118c5719f62913d299aa7be
| | Author: iglesias <fernando.iglesiasg@gmail.com>
| | Date:   Sat Feb 11 02:30:33 2012 +0100
| | 
| |     fixed include directive
| | 
| | M	src/shogun/classifier/SubGradientLPM.cpp
| |     
* |   commit 263c5cdd2e25f5865a8d87f3ad8f1836711d3dcd
|\ \  Merge: 8ac203f 52c7f1d
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Fri Feb 10 23:17:08 2012 +0400
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 52c7f1d21812285b948cc5d7b9052bd385e816ce
| |\  Merge: 92de080 ef1c6e3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Feb 10 08:27:25 2012 -0800
| | | 
| | |     Merge pull request #368 from vigsterkr/master
| | |     
| | |     Add Jensen-Shannon kernel
| | |    
| | * commit ef1c6e3dc9e2cca8d75bfad1c417b4391209a2e3
| | | Author: Viktor Gal <viktor.gal@maeth.com>
| | | Date:   Fri Feb 10 17:19:54 2012 +0100
| | | 
| | |     Change to CMath::log2 in JensenShannonKernel
| | | 
| | | M	src/shogun/kernel/JensenShannonKernel.cpp
| | |    
| | * commit 51e38cb97a6d36601d2aae154607fd812552fcd1
| |/  Author: Viktor Gal <viktor.gal@maeth.com>
| |   Date:   Fri Feb 10 16:19:20 2012 +0100
| |   
| |       Add Jensen-Shanon kernel This patch adds a CDotKernel based Jensen-Shannon kernel to shogun-toolbox. Sources of modular interface has been changed so it can be used via the modular interfaces as well.
| |   
| |   M	src/interfaces/modular/Kernel.i
| |   M	src/interfaces/modular/Kernel_includes.i
| |   A	src/shogun/kernel/JensenShannonKernel.cpp
| |   A	src/shogun/kernel/JensenShannonKernel.h
| |   M	src/shogun/kernel/Kernel.cpp
| |   M	src/shogun/kernel/Kernel.h
| |     
* |   commit 8ac203fbc10c024cfbfff4ec56eeed60d15f8699
|\ \  Merge: 5e230d1 92de080
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Feb 8 22:24:02 2012 +0400
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 92de080cf28ded33d4d3438004acc1e3960abbff
| |\  Merge: fe66a2d b0311a3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Feb 3 13:49:36 2012 -0800
| | | 
| | |     Merge pull request #366 from karlnapf/master
| | |     
| | |     added print_modsel_params method
| | |    
| | * commit b0311a3959d668843f589bff99a686c7b349c96e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Feb 3 18:11:29 2012 +0000
| | | 
| | |     nicer type error message for model selection parameters
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
| | * commit 69122e6b142963a519c33de1496946b3dacfdbb7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Feb 3 17:14:01 2012 +0000
| | | 
| | |     added example for mean squared log error
| | | 
| | | A	examples/undocumented/python_modular/evaluation_meansquaredlogerror_modular.py
| | |    
| | * commit 55e37dfd3ed0e8b51146b1cc081ee0c010ce91d5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Feb 3 17:13:49 2012 +0000
| | | 
| | |     added print_model_params
| | | 
| | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | |    
| | * commit 2bb8ae8e40e545af2bde77000f4fca32ecbcb9b4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Feb 3 17:13:37 2012 +0000
| | | 
| | |     added usage of print_modsel_params to all relevant examples
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_liblinear.py
| | | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| | |    
| | * commit 5abcd79692d51742c3ff705454ce2d43caaff01d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Feb 3 17:11:00 2012 +0000
| | | 
| | |     added method to print all model selection parameters
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | |    
| | * commit f0ef8d1ae1fe20660e6dd98894d3f907ab73ed50
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 19:14:17 2012 +0000
| | | 
| | |     relaxed labels to be up till -1.0 (not including)
| | | 
| | | M	src/shogun/evaluation/MeanSquaredLogError.cpp
| | |    
| | * commit 74feefe0be52cf75876d4c3f51dba43c30d27d8b
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Feb 3 17:15:53 2012 +0000
| |   
| |       temp add of method to be able to call this from python
| |   
| |   M	src/shogun/regression/KRR.cpp
| |   M	src/shogun/regression/KRR.h
| |     
| *   commit fe66a2d0c9801130b5873cae26e97fc23c2ce307
| |\  Merge: b23ce0b f760a9a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Feb 2 12:27:41 2012 -0800
| | | 
| | |     Merge pull request #365 from karlnapf/master
| | |     
| | |     added new error measure for regression
| | |    
| | * commit f760a9a9172ac291403e935d1b0424601b2e7c33
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 19:17:01 2012 +0000
| | | 
| | |     typos
| | | 
| | | M	src/shogun/evaluation/MeanSquaredLogError.h
| | |    
| | * commit 6667ba3914d3a49d7be549cc6a7a0cbe522ced8b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 18:42:48 2012 +0000
| | | 
| | |     fixed copy paste error
| | | 
| | | M	src/interfaces/modular/Evaluation.i
| | |    
| | * commit fbee33b1b0ee70220a1457a3e4e6dbfc2994bb01
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 18:38:35 2012 +0000
| | | 
| | |     added mean squared log error to interface
| | | 
| | | M	src/interfaces/modular/Evaluation.i
| | | M	src/interfaces/modular/Evaluation_includes.i
| | |    
| | * commit 4ba3bc7d67d4ae92cb463d53a33f763a40de18a9
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 18:35:23 2012 +0000
| | | 
| | |     added non-neg check
| | | 
| | | M	src/shogun/evaluation/MeanSquaredLogError.cpp
| | |    
| | * commit a36c304104393086a16ee85b2bdc150a5b37a8dc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 18:29:34 2012 +0000
| | | 
| | |     added an error evaluation class for regression
| | | 
| | | A	src/shogun/evaluation/MeanSquaredLogError.cpp
| | | A	src/shogun/evaluation/MeanSquaredLogError.h
| | |      
| * |   commit b23ce0bd3fa0a5ccecd92565ac6197326b3da622
| |\ \  Merge: 9e5cd66 50a5e90
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Feb 2 02:15:10 2012 -0800
| | |   
| | |       Merge pull request #364 from karlnapf/master
| | |       
| | |       added check for confidence interval
| | |    
| | * commit 50a5e90f3f695d072df1b21ff13ba502c03d8457
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Feb 2 10:09:10 2012 +0000
| |   
| |       added num runs check for confidence interval
| |   
| |   M	src/shogun/evaluation/CrossValidation.cpp
| |     
| *   commit 9e5cd6621da19766d9533f571da0654a2a212db7
| |\  Merge: e0dd942 ad400aa
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Feb 2 01:59:00 2012 -0800
| | | 
| | |     Merge pull request #363 from karlnapf/master
| | |     
| | |     fixed warning
| | |    
| | * commit ad400aa0a58ef6aa404baab62747eb6e71f3fb45
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Feb 2 09:51:54 2012 +0000
| |   
| |       renamed print to avoid python name clash
| |   
| |   M	src/shogun/modelselection/GridSearchModelSelection.cpp
| |   M	src/shogun/modelselection/GridSearchModelSelection.h
| |   M	src/shogun/modelselection/ModelSelection.h
| |     
| *   commit e0dd9424fa4f9b6dfee42cdfcf83366dc0f2937c
| |\  Merge: 3a8a841 839b82a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Feb 2 01:46:43 2012 -0800
| | | 
| | |     Merge pull request #362 from karlnapf/master
| | |     
| | |     fix minor error in example
| | |    
| | * commit 839b82a0ba335a3e7279c2c1b8d64e83847d2aa7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Feb 2 09:43:01 2012 +0000
| | | 
| | |     use MSE instead of accuracy and normal x-validation splitting
| | | 
| | | M	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| | |    
* | | commit 5e230d19b81e8f7bae532ee14fe59db440646c6b
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Sun Feb 5 00:41:48 2012 +0400
| |   
| |       Added SumOne preprocessor
| |   
| |   M	src/interfaces/modular/Preprocessor.i
| |   M	src/interfaces/modular/Preprocessor_includes.i
| |   M	src/shogun/preprocessor/Preprocessor.h
| |   A	src/shogun/preprocessor/SumOne.cpp
| |   A	src/shogun/preprocessor/SumOne.h
| |   
* | commit 3a8a841aaf9bbcb56ea8e7abc75f74903339b04e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Feb 2 01:00:54 2012 +0400
| | 
| |     Added confusion matrix routine
| | 
| | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | M	src/shogun/evaluation/MulticlassAccuracy.h
| |     
* |   commit 8918497881341f86dc29ffa28f3b5ed1f838ea71
|\ \  Merge: 281491a 7ae07d0
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Feb 1 12:01:06 2012 -0800
| |   
| |       Merge pull request #361 from karlnapf/master
| |       
| |       KRR/SVR and cross-validation/model-selection
| |   
| * commit 7ae07d0b93aff85f94f2e6695d39f6e2a276b9c1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:55:50 2012 +0000
| | 
| |     typo
| | 
| | M	src/shogun/kernel/Kernel.cpp
| |   
| * commit 259eeec745f01e250356fb70c618bc93bc9275c7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:55:42 2012 +0000
| | 
| |     use do_free flag
| | 
| | M	src/shogun/features/Labels.cpp
| |   
| * commit be101e17853ee2dcee80279e5662f3318d2f15cc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:48:43 2012 +0000
| | 
| |     added example for a grid search with krr
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_krr.py
| |   
| * commit a41445f17867ad9f38052510d5b39acfdb0f09fd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:48:15 2012 +0000
| | 
| |     made search space smaller
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| |   
| * commit bbe2e3318ea252bc07bcda45132481a21ce3c3d6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:44:17 2012 +0000
| | 
| |     added an example of model selection for krr
| | 
| | A	examples/undocumented/libshogun/modelselection_grid_search_krr.cpp
| |   
| * commit db3d93743d04946d27f0d8e90cd444325c521c0d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:44:07 2012 +0000
| | 
| |     made tau available for model selection
| | 
| | M	src/shogun/regression/KRR.cpp
| | M	src/shogun/regression/KRR.h
| |   
| * commit 54a60588746dce6cd9edd3afd2a1d9c2724805b7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:43:51 2012 +0000
| | 
| |     added possibility to print current combination while searching
| | 
| | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | M	src/shogun/modelselection/GridSearchModelSelection.h
| | M	src/shogun/modelselection/ModelSelection.h
| |   
| * commit 3c9f354748d97d5def6c8f35c238bacb12c2ef32
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 18:43:29 2012 +0000
| | 
| |     made parameter available for model selection
| | 
| | M	src/shogun/kernel/PolyKernel.cpp
| |   
| * commit 6ece0facc055d73646a2a5744301da7c7b734cab
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:51:31 2012 +0000
| | 
| |     added init method for KRR and added modsel parameters
| | 
| | M	src/shogun/regression/KRR.cpp
| | M	src/shogun/regression/KRR.h
| |   
| * commit f144e5801b930c22288d6ddbf8d647ac77eed0e3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:50:51 2012 +0000
| | 
| |     filename change to be consistent
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_liblinear.py
| | D	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| |   
| * commit 0fb55e7ab92635ef7ac63efdcc768dc1713020e5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:49:25 2012 +0000
| | 
| |     dont use stratified xval
| | 
| | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| |   
| * commit c79aab4f1f2b941a1b19459ff2c78602f0038671
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:46:36 2012 +0000
| | 
| |     use MSE instead of accuracy
| | 
| | M	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| |   
| * commit ca9b1231b440bb0da5bd2ad0862dfa6a1554ad8a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:46:21 2012 +0000
| | 
| |     filename error
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py
| | D	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py.py
| |   
| * commit e018f3bfc2b79cf9450c56b5196e2c53e674e0fa
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:35:20 2012 +0000
| | 
| |     added an example for model selection for libsve
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_libsvr.py.py
| |   
| * commit 04bad80fa4f255bcceb8452daf8ba7613da6aba4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:17:01 2012 +0000
| | 
| |     stupid autointend
| | 
| | M	src/shogun/evaluation/CrossValidation.cpp
| |   
| * commit be173de12968a87b4c178ce125ab280e5412a420
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:08:19 2012 +0000
| | 
| |     show how to use confidence intervals
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| | M	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| |   
| * commit 9c87a1336082f17d8884dfbe06615abc16695df1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:01:27 2012 +0000
| | 
| |     KRR now stored the alpha coefficients in the underlying KernelMachine superclass
| | 
| | M	src/shogun/regression/KRR.cpp
| | M	src/shogun/regression/KRR.h
| |   
| * commit 461ea6094f0f61e7b544aedac8c34e0dc5fdffde
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:01:06 2012 +0000
| | 
| |     replaced memset by iterating again :(
| | 
| | M	src/shogun/mathematics/Math.h
| |   
| * commit 9ec8f48d6af9fad3e10234d14a67a83366a5a497
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:00:54 2012 +0000
| | 
| |     better comment intendation
| | 
| | M	src/shogun/machine/KernelMachine.h
| |   
| * commit dbacf3e90843d4e8ee0d51411832b076ff84c373
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:00:45 2012 +0000
| | 
| |     get_alphas and get_support_vectors no longer return copies (I checked this, its not used anywhere and makes no sense)
| | 
| | M	src/shogun/machine/KernelMachine.cpp
| |   
| * commit c6b8286cfd978aa5b4a54db86e99efac2a32011b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 17:00:14 2012 +0000
| | 
| |     safety SG_REF/UNREF in init method to avoid deleting the kernel that somebody wants to set
| | 
| | M	src/shogun/kernel/Kernel.cpp
| |   
| * commit 54ff88d13c422ebac7f023adfd029d3ccac4a0ba
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:59:44 2012 +0000
| | 
| |     added flag to tell if index sets are built.
| |     Also these have to be built by hand now
| | 
| | M	src/shogun/evaluation/CrossValidationSplitting.cpp
| | M	src/shogun/evaluation/CrossValidationSplitting.h
| | M	src/shogun/evaluation/SplittingStrategy.cpp
| | M	src/shogun/evaluation/SplittingStrategy.h
| | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 9519dc206a7eaedf0a7916e67bc5fe04d15fbe9a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:59:05 2012 +0000
| | 
| |     fixed typos
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| |   
| * commit 84aaa830a57d5eb0b73e38e67c88f4ce644c2b6c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:58:53 2012 +0000
| | 
| |     white space changes
| | 
| | M	src/shogun/evaluation/CrossValidation.cpp
| |   
| * commit a45f7f4c407557c578b3b92634730f27c2239a75
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:55:56 2012 +0000
| | 
| |     added example for cross-validation with KRR
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/evaluation_cross_validation_regression.cpp
| |   
| * commit 6df0fd4cde2d80672a96845ab917a0f550084c05
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:55:38 2012 +0000
| | 
| |     added manual call of build_subsets of splitting strategy
| | 
| | M	examples/undocumented/libshogun/splitting_standard_crossvalidation.cpp
| | M	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| |   
| * commit 92477f719220394a9f4f7ff266d34d58a26f6637
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 16:55:13 2012 +0000
| | 
| |     some corrections additions
| | 
| | M	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| |   
| * commit 910e2a881eb0c0b19dfbcbd5b394460f02324a21
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:08:58 2012 +0000
| | 
| |     -added apply(CFeatures*) method
| |     -overwritten store_model_features method since model is stored anyways
| | 
| | M	src/shogun/regression/KRR.h
| |   
| * commit 90ac309990ab8dd11d795c03c67d36dffea57a4c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:08:34 2012 +0000
| | 
| |     usage of new get_labels_copy method
| |     added apply(CFeatures*) method
| | 
| | M	src/shogun/regression/KRR.cpp
| |   
| * commit eaa39128f979b2cf7e38c9498aa22063574956e8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:07:58 2012 +0000
| | 
| |     -introduced sin function
| |     -use of memcpy and memset instead of iterating over arrays
| | 
| | M	src/shogun/mathematics/Math.h
| |   
| * commit 5ed2a50581b829250c3b08b913e7e68ca7934801
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:07:24 2012 +0000
| | 
| |     added comment
| | 
| | M	src/shogun/machine/KernelMachine.h
| |   
| * commit fed518b681c91cedf2418fa9bd19bc5380b3dbcc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:07:13 2012 +0000
| | 
| |     added method to get a copy of the current labels (with possible subset view)
| | 
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/Labels.h
| |   
| * commit 306538c85d14de50b410f57ea74055fda1ff566a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:06:41 2012 +0000
| | 
| |     added example/test for cross-validation in classification
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/evaluation_cross_validation_classification.cpp
| |   
| * commit 74d8f7682ea6b01d4e28d2ea8a44bfabb07637ae
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:06:03 2012 +0000
| | 
| |     corrections
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   
| * commit e61ee018cfb8e691703b151872a77e42379553d8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Feb 1 00:05:44 2012 +0000
| | 
| |     added example for cross-validation in classification
| | 
| | A	examples/undocumented/python_modular/evaluation_cross_validation_regression.py
| |   
| * commit ca7407a5d9482a43e75642e0d5b89b6a3457db0a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:36:48 2012 +0000
| | 
| |     and more corrections
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   
| * commit 6ae14716d2ac024c232eac4c16153c9db6cd7cc0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:35:05 2012 +0000
| | 
| |     more corrections
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   
| * commit c32bf0d0129b5d0aeb882cbc40092d7517d68f80
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:32:19 2012 +0000
| | 
| |     corrections
| | 
| | M	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   
| * commit 5fd44a2984d4291a219d09580fabdd47273060ea
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:30:24 2012 +0000
| | 
| |     added python modular example for using cross-validation-evaluation
| |     for classification
| | 
| | A	examples/undocumented/python_modular/evaluation_cross_validation_classification.py
| |   
* | commit 281491a1020ec5ff136957eb0141f3d16b923687
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Wed Feb 1 23:25:10 2012 +0400
|   
|       Conjugate index improvement
|   
|   M	src/shogun/classifier/ConjugateIndex.cpp
|  
* commit b65f48ec658c4eb966d8bd25680a2284217eae94
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 1 09:04:38 2012 +0100
| 
|     fix minor documentation typos
| 
| M	src/shogun/features/Labels.h
| M	src/shogun/regression/KRR.h
|    
*   commit 6dea0b9f52da584e0c7596bc9e90c23d297eeabd
|\  Merge: 2674c70 ed1dbb7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jan 31 06:20:39 2012 -0800
| | 
| |     Merge pull request #360 from karlnapf/master
| |     
| |     introduced standard cross-validation splitting
| |   
| * commit ed1dbb7bafe6623e4a0cdf7bc90ea955f7de499f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:01:49 2012 +0000
| | 
| |     added example/test for std cross-validation splitting
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/splitting_standard_crossvalidation.cpp
| |   
| * commit 2a765e6e0debf090b674edf9fa3521492b7a6576
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:01:30 2012 +0000
| | 
| |     applied method name change
| | 
| | M	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| |   
| * commit fbf5e60684e24e7449f9db043ca934b8dbba520f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:01:13 2012 +0000
| | 
| |     introduced new class for standard cross-validation splitting
| |     (which in contrast to stratified corss-validation splitting may be used for
| |     regression)
| | 
| | M	src/interfaces/modular/Evaluation.i
| | M	src/interfaces/modular/Evaluation_includes.i
| | A	src/shogun/evaluation/CrossValidationSplitting.cpp
| | A	src/shogun/evaluation/CrossValidationSplitting.h
| |   
| * commit dc505cfcd86560cf5a9d71cae76dd53c21e84536
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 12:00:37 2012 +0000
| | 
| |     moved check for "stupid" num_labels/num_subsets/num_classes
| |     combinations to stratified cross-validation (where it acutally belongs to)
| | 
| | M	src/shogun/evaluation/SplittingStrategy.cpp
| | M	src/shogun/evaluation/SplittingStrategy.h
| | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 593f081dfb0959f2aa976ac4906cc9df38aa0fb4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 31 11:59:49 2012 +0000
| | 
| |     renamed get_classes to get_unique_labels
| | 
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/Labels.h
| |   
| * commit a1f0979fe415bc0350b4165764879effdf0fc602
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Jan 31 11:59:26 2012 +0000
|   
|       randperm does not work so added SG_SNOTIMPLEMENTED
|   
|   M	src/shogun/lib/DataType.h
|  
* commit 2674c70c63e0631b9809954e120fbc711d3baca7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 04:11:16 2012 +0400
| 
|     PTHREAD ifdefing
| 
| M	src/shogun/classifier/svm/SVM_libsvm.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/io/InputParser.h
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 60eaa48373c016af6c22f297439dae95aab8442d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 03:10:01 2012 +0400
| 
|     unParallel swissroll example
| 
| M	applications/edrt/swissroll_embedding.py
|  
* commit 87cb3b0c9f9134a3bfef6a238ed7d90d16d89f0c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 03:00:24 2012 +0400
| 
|     Removed junk
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
|  
* commit bd52d2d4af65e12f1690cfd635e798cddc1bb85e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 02:58:11 2012 +0400
| 
|     Covertree max distance computation fix for KLLE
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
|  
* commit 6b6a3f693ba48e00744c1aa379ce91053acac1a0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 02:57:51 2012 +0400
| 
|     Proper automatic k neighborhood matrix handling for LLE,HLLE,LTSA
| 
| M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
|  
* commit 5381511842f944386712fc8e470926a2a0513218
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 00:18:11 2012 +0400
| 
|     Fixed GCArray libshogun example
| 
| M	examples/undocumented/libshogun/library_gc_array.cpp
|  
* commit c9bee8f06a0b82d95250d16969462da894f6466a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 31 00:17:52 2012 +0400
| 
|     Added check-valgrind target for libshogun makefile
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit eb87647457b5ee072f8421f2e07b03ddcecc301f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 21:17:48 2012 +0100
| 
|     document remaining methods of binned dot features
| 
| M	src/shogun/features/BinnedDotFeatures.h
|  
* commit b2167c35033ad843dac38803d968849a9747d163
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 20:51:46 2012 +0100
| 
|     remove unused variables j and tmp from Isomap to fix warning
| 
| M	src/shogun/converter/Isomap.cpp
|  
* commit 7e4fa423f7b17537aac32c6dd8479dbb5c5672e1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 30 20:20:56 2012 +0400
| 
|     Added covertree libshogun example
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/library_cover_tree.cpp
|  
* commit 8d1ddcd4dc4b0d68b5b9f453d795f8643758086a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 17:18:23 2012 +0100
| 
|     fix various doxygen documentation warnings
| 
| M	src/shogun/base/Parameter.h
| M	src/shogun/base/ParameterMap.h
| M	src/shogun/base/SGObject.h
| M	src/shogun/features/BinnedDotFeatures.h
| M	src/shogun/features/Labels.h
| M	src/shogun/lib/CoverTree.h
| M	src/shogun/mathematics/Math.h
|  
* commit f3ba06ed5f1524eacccc7c1df61b79836b81c08a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 10:54:05 2012 +0100
| 
|     add SGVector based dense_dot_vec function wrapping dense_dot to
|     dotfeatures
| 
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
|  
* commit f05bf2a808c6d4f0dcf1e9e96af8ebc9f60b2c69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 10:53:34 2012 +0100
| 
|     fix normalization in binned dot features' dot() function
| 
| M	src/shogun/features/BinnedDotFeatures.cpp
|  
* commit c31eeebda3a6a07e625449bd5acb8767af778e9a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 09:33:43 2012 +0100
| 
|     include <clapack.h> directly
|     
|     we cannot include <atlas/clapack.h> as some distriutions ship clapack
|     under /usr/include
| 
| M	src/configure
| M	src/shogun/classifier/svm/pr_loqo.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit bb8981cbe78ffa2c230719fc21445639767adccc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 30 09:11:24 2012 +0100
| 
|     fix compilation error when lapack is not available
| 
| M	src/shogun/ui/GUIConverter.cpp
|  
* commit ec8ca7297bead5239e33a4815b81bdb75712c68f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 30 10:26:29 2012 +0400
| 
|     CoverTree for EDRT
| 
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
| A	src/shogun/lib/CoverTree.h
|  
* commit a26990bd0f522591b35bfeabf72a0f777ec7c80d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 30 06:47:12 2012 +0400
| 
|     Fixes and improvements of EDRT
| 
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
|  
* commit d495f16576d601aef53a10bc837563903713a640
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 28 20:19:09 2012 +0100
| 
|     add example for binned dot features and implement dot().
| 
| A	examples/undocumented/python_modular/features_binned_dot_modular.py
| M	src/shogun/features/BinnedDotFeatures.cpp
| M	src/shogun/features/FeatureTypes.h
| M	src/shogun/kernel/Kernel.cpp
|  
* commit 5f86b76452d515cd6378cabd7d9b1039f2fd269a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Jan 28 19:10:36 2012 +0400
| 
|     Updated news
| 
| M	src/NEWS
|  
* commit daa61fec48fffb7d8a2c0503fbd8151bfaeaab4d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Jan 28 03:09:05 2012 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit aa21d43c93f614f6f0b361354213494b0411aa8f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Jan 28 03:02:04 2012 +0400
| 
|     EDRT now support static
| 
| A	applications/edrt/octave_ltsa.m
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| M	src/shogun/converter/Isomap.h
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalityPreservingProjections.h
| M	src/shogun/converter/LocallyLinearEmbedding.h
| M	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
| M	src/shogun/ui/GUICommands.h
| A	src/shogun/ui/GUIConverter.cpp
| A	src/shogun/ui/GUIConverter.h
| M	src/shogun/ui/SGInterface.cpp
| M	src/shogun/ui/SGInterface.h
|  
* commit bdbf4e0761e6a78f6a3c21ea4137745f8ecf316a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 27 16:20:30 2012 +0100
| 
|     support for normalized binned features, filled up bins, and only
|     matching bin filled up
| 
| M	src/shogun/features/BinnedDotFeatures.cpp
| M	src/shogun/features/BinnedDotFeatures.h
|  
* commit 125d520f0eebe9eede23528df28d3a504e2f1ed6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 27 15:52:21 2012 +0100
| 
|     add BinnedDotFeatures
| 
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/Features_includes.i
| A	src/shogun/features/BinnedDotFeatures.cpp
| A	src/shogun/features/BinnedDotFeatures.h
|  
* commit f6e3ca794c16543910cfc0b037217673b6fb442c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 27 15:51:49 2012 +0100
| 
|     add get_column_vector function to SGMatrix
| 
| M	src/shogun/lib/DataType.h
|  
* commit 18419f634bb24f493762aa6fb80a42f96b6ad269
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 27 15:51:01 2012 +0100
| 
|     fix accidental row/column mixup in get_computed_dot_feature_matrix()
| 
| M	src/shogun/features/DotFeatures.cpp
|    
*   commit 35c5832f83cd27eeaeeb807b57e8480edda9563d
|\  Merge: 71b757f c5bd645
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jan 27 07:16:12 2012 -0800
| | 
| |     Merge pull request #359 from karlnapf/master
| |     
| |     finally - migration is complete :)
| |   
| * commit c5bd645f34583c8b81ffa73feab8823003fa96db
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jan 27 14:58:48 2012 +0000
| | 
| |     added an example where one parameter depends on multiple others
| |     pretty cool huh? :)
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_migration_multiple_dependencies.cpp
| |   
| * commit 1416aa1a61e3b196925c03d43075eb4b57c1484c
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Jan 27 14:58:26 2012 +0000
|   
|       remove some debug messages
|   
|   M	src/shogun/base/ParameterMap.cpp
|  
* commit 71b757f7f876cd535b579670e197e49fa8e9f955
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jan 27 13:43:30 2012 +0400
| 
|     Removed tutorial pdf
| 
| D	applications/edrt/tutorial.pdf
|    
*   commit a4254aaf46db5c9acc85571f7c3532f94dc3a06e
|\  Merge: 05425f4 22a36ad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jan 27 00:53:01 2012 -0800
| | 
| |     Merge pull request #358 from karlnapf/master
| |     
| |     usage of new multi-map
| |   
| * commit 22a36ad558346f8577c2e272b12554ad526056e4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 26 21:13:36 2012 +0000
| | 
| |     changed load_file_parameter method to now make use of the
| |     multi-mapping array. In theory, parameters which depend on multiple
| |     others should now be completely loaded from file. Example is to come...
| |     
| |     renamed methods
| |     load_file_parameters->load_all_file_parameters
| |     load_file_parameter->load_file_parameters
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit 28bd72c7fe15742a148dc7f49ee9763d0a64eba9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 26 21:11:42 2012 +0000
| | 
| |     adapted filename changes
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
| * commit d0d53b676c7ab405205ecf28aacff95812b821d0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 26 21:11:21 2012 +0000
| | 
| |     adapted load_file_parameter(s) changes to examples
| | 
| | M	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| | M	examples/undocumented/libshogun/base_map_parameters.cpp
| | M	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
| | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| |   
| * commit 2b7ec685f84f2a4fcb7fbefef404fb2b1eb4b88d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 26 21:10:55 2012 +0000
| | 
| |     renamed load_file_parameter to load_file_parameters
| |     and load_file_parameters (old one) to load_all_file_paramters
| |     
| |     adapted these name changes to examples
| |     
| |     adapted load_file_parameter(s) changes to examples
| | 
| | A	examples/undocumented/libshogun/base_load_all_file_parameters.cpp
| | D	examples/undocumented/libshogun/base_load_file_parameter.cpp
| | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| |   
* | commit 05425f43365c6e11a357f93ad21e2f1df444368f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jan 27 03:44:56 2012 +0400
| | 
| |     Added current version of the EDRT tutorial
| | 
| | A	applications/edrt/tutorial.pdf
| | A	applications/edrt/tutorial_examples/data.py
| | A	applications/edrt/tutorial_examples/dm.py
| | A	applications/edrt/tutorial_examples/hlle.py
| | A	applications/edrt/tutorial_examples/isomap.py
| | A	applications/edrt/tutorial_examples/klle.py
| | A	applications/edrt/tutorial_examples/kltsa.py
| | A	applications/edrt/tutorial_examples/la.py
| | A	applications/edrt/tutorial_examples/lle.py
| | A	applications/edrt/tutorial_examples/lltsa.py
| | A	applications/edrt/tutorial_examples/lpp.py
| | A	applications/edrt/tutorial_examples/ltsa.py
| | A	applications/edrt/tutorial_examples/mds.py
| | A	applications/edrt/tutorial_examples/npe.py
| |   
* | commit d630066c174ba157c8a18ab46f8e8bf9f88933b9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jan 27 03:39:06 2012 +0400
| | 
| |     Updated news
| | 
| | M	src/NEWS
| |   
* | commit 9e67a3a129cfb9d17e9b59940cbdaf8074dd48e8
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Fri Jan 27 02:42:59 2012 +0400
|   
|       Updated EDRT examples
|   
|   D	applications/dimreduction/faces_embedding.py
|   D	applications/dimreduction/words_embedding.py
|   A	applications/edrt/faces_embedding.py
|   A	applications/edrt/lle_auto_k.py
|   A	applications/edrt/swissroll_embedding.py
|   A	applications/edrt/words_embedding.py
|   D	examples/undocumented/python_modular/graphical/kltsa_swissroll.py
|   D	examples/undocumented/python_modular/graphical/lle_auto_k.py
|   D	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit ed7042e39d98e2adbf2f8546c7bee2462153ce5b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 26 21:08:40 2012 +0400
| 
|     Improvements for difmaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit 07aee3c92aabe9384b87ba7328a026305c78fc30
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 26 21:08:22 2012 +0400
| 
|     Fixed arpack wrapper
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit f2f8353c24635db216f6d662a21d1f540d5e1c1f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 26 15:28:33 2012 +0400
| 
|     Improved arpack and LLE
| 
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/mathematics/arpack.cpp
|  
* commit 02dccd4331658a40a9cb74a38d8035a2d51cd97e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 26 11:34:47 2012 +0100
| 
|     add cast to char* to fix compile error
| 
| M	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
|    
*   commit 63a4c79cd1d07a08b6d5bdd6ff525334ac882872
|\  Merge: 374fbca 6c7c0d8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jan 26 02:03:32 2012 -0800
| | 
| |     Merge pull request #357 from karlnapf/master
| |     
| |     multiple parameter mappings
| |   
| * commit 6c7c0d856eaabff7521ab1c64cf9f75ab5ae444f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 23:45:52 2012 +0000
| | 
| |     documentation
| | 
| | M	src/shogun/base/ParameterMap.h
| |   
| * commit 59011f9ae6a5b2ca3761feb2dca40baede9d229f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 23:26:38 2012 +0000
| | 
| |     removed debug messages
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit 99ad803d21bbee4765a35e2d64ea97a68aebd341
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 23:23:22 2012 +0000
| | 
| |     fixed a possible source for memory error
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit 711820f7a2d1f21d1585c0ba4c50fde2fcf6c282
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 23:16:45 2012 +0000
| | 
| |     fixed a source for memory error
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit 638ddd63523c6ed4d75316cbce188025c9a59af9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 23:16:31 2012 +0000
| | 
| |     fixed compiler issue
| | 
| | M	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
| |   
| * commit 6fcdb263515c6ba0b23b53853ff9764355878df2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 22:47:47 2012 +0000
| | 
| |     first try to make use of multimapping globally
| | 
| | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/base/ParameterMap.h
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit fbc0dafa6a559afd8a4d12f5f40b27e47e5758c9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 00:09:23 2012 +0000
| | 
| |     adapted for new mutli-value per key parameter map and added testcase
| | 
| | M	examples/undocumented/libshogun/base_parameter_map.cpp
| |   
| * commit cc1bc8135725bc64bfcea6c494f6a8821d3cf8b6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 00:08:59 2012 +0000
| | 
| |     added reset function
| | 
| | M	src/shogun/base/DynArray.h
| |   
| * commit c38194b15f76c870f07e1efbdcecf48aa3750ea9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 00:08:51 2012 +0000
| | 
| |     -changes to allow one key to contain multiple values
| |     -cleanups
| | 
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/base/ParameterMap.h
| |   
| * commit 577eec41029e81c071df5ff22fcf9fc643b9e265
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 25 00:08:01 2012 +0000
| | 
| |     added me as author
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit 5de8c5660618c2ad071bd2090c4e5c5d3c9f081a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 24 11:55:20 2012 +0000
| | 
| |     temp commit
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit 69be4672538c39ab8cde57c0fe953784b6b35b9d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 11 15:06:43 2012 +0000
| | 
| |     removed a debug line
| | 
| | M	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
| |   
| * commit e87a017b65bacd9ca303bbbde71abe72e3716a23
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 11 14:53:25 2012 +0000
|   
|       fixed a typo
|   
|   M	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
|  
* commit 374fbcaedb6fa789db4cb49981f0019028be290e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 24 23:41:17 2012 +0100
| 
|     fix various errors/warnings occurring with clang
| 
| M	src/shogun/classifier/svm/MultiClassSVM.cpp
| M	src/shogun/classifier/svm/ScatterSVM.cpp
| M	src/shogun/lib/Hash.cpp
| M	src/shogun/ui/GUIClassifier.cpp
|  
* commit a0e22e433aad00500fb0ee16741a7ba8f9d191cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 22 19:54:30 2012 +0100
| 
|     use dmcs instead of gmcs (if available) o compile mono pkgs
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit f5d16516e16d1fbfbc9a72812842df27882c4ffd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 18 20:34:40 2012 +0100
| 
|     pickle_ascii should be 1 if pickle version is 0
| 
| M	src/interfaces/modular/SGBase.i
|  
* commit 5bc58bb83c35dde46bd3d1770d0050e5c0e293bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 18 17:17:38 2012 +0100
| 
|     fallback to original pickle/serialization routines if objects are not
|     instances of SGObject
| 
| M	src/interfaces/modular/SGBase.i
|  
* commit c167cfb739d04d9e2b0789318cdb3cc6e7e9a00e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 18 08:31:05 2012 +0100
| 
|     fix hdf5 serialization check mismatch
| 
| M	src/interfaces/modular/SGBase.i
|  
* commit 80a6332053917d9315a172cf091569f01c6ec5ad
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Jan 11 21:23:50 2012 +0400
| 
|     Change GNB to operate in log-space. Closes #351
| 
| M	src/shogun/classifier/GaussianNaiveBayes.cpp
|  
* commit 0c8e48ba3ed60410db4f2afd12b8585a0c7abbc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 11 13:14:56 2012 +0100
| 
|     update copyright to 2012
| 
| M	src/shogun/base/Version.cpp
|    
*   commit cf19c55e62e4f14dce67f028e18ec824310513f1
|\  Merge: 28be6eb 0989660
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jan 11 01:48:36 2012 -0800
| | 
| |     Merge pull request #356 from karlnapf/master
| |     
| |     adding new parameters
| |   
| * commit 098966001b5db11aa51d44a293ece553af7e0018
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:26:29 2012 +0000
| | 
| |     adapted the SGParamInfo to const SGParamInfo changes
| | 
| | M	examples/undocumented/libshogun/base_parameter_map.cpp
| |   
| * commit cdd4cb0a5030e425fdb726e1bea972067c642e23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:24:25 2012 +0000
| | 
| |     applied all the SGParamInfo to const SGParamInfo changes to make
| |     example work again
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameter.cpp
| | M	examples/undocumented/libshogun/base_map_parameters.cpp
| |   
| * commit 11f8a56b8e552c2afe744bad543f75ece28c143a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:19:32 2012 +0000
| | 
| |     adapted signature change of migrate method
| | 
| | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| |   
| * commit d6876bda3a2b827ecefd27064e11f2724dffb978
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:12:14 2012 +0000
| | 
| |     added new example for new parameters and dropping parameters
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_migration_dropping_and_new.cpp
| |   
| * commit 14f49a4116d199287ce7d89b58331c57930aed61
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:06:22 2012 +0000
| | 
| |     -made all SGParamInfo const
| |     -new parameters may now be added when migrating from one version to next
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit 7b01a658b1e6b6bfabdf192b70bae438addcfe99
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:05:47 2012 +0000
| | 
| |     -added handlin of NULL to compare operators and simplyfied
| |     -made SGParamInfo  all const
| |     -added method SGParamInfo::is_empty to check whether this param info
| |     was defined by std constructor and corresponds to an empty parameter
| | 
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/base/ParameterMap.h
| |   
| * commit 805ee2ffc8c4599ae26be3d252906b7bf9d68ade
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 22:04:27 2012 +0000
| | 
| |     removed Parameter::load because it will (and must) not be used anmore
| |     due to migration changes.
| |     Loading is now done by hand
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit 73f9ccf4a1ab05080b9807a5a09377b83ab49efd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 12:56:11 2012 +0000
| | 
| |     some clean up
| | 
| | M	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| |   
| * commit f15ec4745b19879aa891194686744c80d82809d8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 12:55:47 2012 +0000
| | 
| |     white space changes
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 0e9294eb79398a20c596025e8c0a462bfc4a12af
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 12:55:41 2012 +0000
| | 
| |     white space changes
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit afac8f5109431cb7bfd16aa18b76d99b1c5faf18
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 12:29:36 2012 +0000
| | 
| |     added assert that there are no duplicate keys in map
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit fb2b569b6adff2c0e0ed6943c7ed909c2088bdeb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 12:29:14 2012 +0000
| | 
| |     corrected error in example due to restriction that parameter step has to
| |     be one
| | 
| | M	examples/undocumented/libshogun/base_parameter_map.cpp
| |   
| * commit 7ed241595582ad56af3718eee18566e8a3a04bae
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Tue Jan 10 12:06:46 2012 +0000
|   
|       added check that parameter versions may only differ by one
|   
|   M	src/shogun/base/ParameterMap.cpp
|    
*   commit 28be6eb91cf375d824a10a8a22e9b36fe6e30ede
|\  Merge: e41bbe2 8e4e4f2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jan 10 23:07:57 2012 -0800
| | 
| |     Merge pull request #355 from karlnapf/master
| |     
| |     First working migration example
| |   
| * commit 8e4e4f2fabba777f3ea46012b9ee5e1b2ae642af
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 10:09:07 2012 +0000
| | 
| |     added documentation
| | 
| | M	src/shogun/base/SGObject.h
| |   
| * commit a4027f3c6698c3146bdc38da4d08bf4dde76b8f4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:47:00 2012 +0000
| | 
| |     renamed new miration example
| | 
| | M	examples/undocumented/libshogun/Makefile
| | D	examples/undocumented/libshogun/base_migration_example.cpp
| | A	examples/undocumented/libshogun/base_migration_type_conversion.cpp
| |   
| * commit ddb1c08723299202af4e8ac42c05ba7b10d519f2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:41:18 2012 +0000
| | 
| |     added a description for a TODO comment
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit e700b6544346fe3e9128dbbe64bcd7178cba3f70
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:39:52 2012 +0000
| | 
| |     removed a todo from comment
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit ae93b61cd0b1d8e7f421ccb74c16a85df41c5738
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:38:13 2012 +0000
| | 
| |     -added documentation for allocate_data_from_scratch
| |     -removed an unnecessary case in implementation
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit 6f8de32bdb174d12f5dad2325065d3db80a81326
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:31:26 2012 +0000
| | 
| |     -added SG_REF/SG_UNREF of CSGObjects in TParameter::copy_data and
| |     TParmameter::delete_all_but_data
| |     -added documentation for TParameter::copy_data
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit 98fadb3c24b8f647a689f9663f52e8d3b55f909a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:20:10 2012 +0000
| | 
| |     -renamed get_rid_of to delete_all_but_data
| |     -corrected documentation
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 756322a202d42836d3c91fad1d348c603dfda31d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:16:43 2012 +0000
| | 
| |     temporarily commented out non-working json file serialization
| | 
| | M	examples/undocumented/python_modular/serialization_complex_example.py
| |   
| * commit 39b7815c335b054a93b51ebae0742f1e9b542443
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:16:24 2012 +0000
| | 
| |     added a prefix for CMath::display_vector / display_matrix
| | 
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| |   
| * commit 6af56cdde0bd55a46c84856bbd33926e0a156c90
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:15:51 2012 +0000
| | 
| |     -added a forgotten init()
| | 
| | M	src/shogun/features/SimpleFeatures.cpp
| |   
| * commit f471ed01050fb738fda02972f1348166bd2e0359
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:15:38 2012 +0000
| | 
| |     -added version flag to load/save methods
| |     -modified the load method to work with migration
| |     -multiple fixes here and there
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit a6c1a2d62d602f41328bea67c67a5991fecc2ede
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:14:58 2012 +0000
| | 
| |     -added TParameter::copy_data() which copies all data from another  instance
| |     -added TParameter::get_rid_of()  which deletes everything but the data
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit ecbf71dfc8124685abc57aeec9ce091bf6a9f122
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 10 09:13:38 2012 +0000
| | 
| |     added first working migration example
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_migration_example.cpp
| |   
* | commit e41bbe28c75f0a877555fb6c57b3db30db2c8588
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jan 11 08:05:52 2012 +0100
| | 
| |     update NEWS to 2012
| | 
| | M	src/NEWS
| |   
* | commit fc7d53d2af27bd2d936a7d5a32e6e2770b5c2193
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Wed Jan 11 08:03:05 2012 +0100
|   
|       put ruby linkflags in postlinkflags to hopefully fix this build error
|       http://debomatic.debian.net/precise/pool/shogun_1.1.0-1ubuntu1/shogun_1.1.0-1ubuntu1.buildlog
|       on ubuntu with ld --as-needed
|   
|   M	src/configure
|  
* commit a10c056c3e5b9b93f5df8d80e790a0bbab6e6849
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 9 22:02:23 2012 +0100
| 
|     When swig >= 2.0.4 is not detected - disable modular interfaces
|     
|     To this end
|     - return 1 in assert_version
|     - don't set $_interface_modular to yes but keep auto state
| 
| M	src/configure
|  
* commit 687cc8db9b890a55193e5e28ddd6a4dc38aa03f7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 9 22:38:11 2012 +0400
| 
|     Added libshogun test for the GNB classifier
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/classifier_gaussiannaivebayes.cpp
|  
* commit 3a5db97432613e35cee3dda42054142a7cccf3e2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 9 22:37:29 2012 +0400
| 
|     Fixes gaussian naive bayes classifier memory handling, related to #351
| 
| M	src/shogun/classifier/GaussianNaiveBayes.cpp
| M	src/shogun/classifier/GaussianNaiveBayes.h
|  
* commit 836af391a8b626c9246b3542d036b60ef4037192
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 9 15:10:24 2012 +0400
| 
|     Fixed arpack example
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
|  
* commit 1c0b8fd4281bce66f088333afdbfd484d5af1c50
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 9 05:01:08 2012 +0400
| 
|     Fixed a typo
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit edd99cc63a029a1bdc13d352f7b00606766a225d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Jan 9 01:34:14 2012 +0400
| 
|     Improved arpack wrapper with new mode, adapted converters and improved Diffusion maps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/LocalityPreservingProjections.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/arpack.h
|    
*   commit 5ce51fed62ad75896e551cce2b5ab635a0596ec0
|\  Merge: 2016b38 0eb5654
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jan 8 12:15:41 2012 -0800
| | 
| |     Merge pull request #350 from karlnapf/master
| |     
| |     map_parameters works
| |   
| * commit 0eb5654e5e4df5cece1536ab87f59c8b3157d354
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jan 8 15:33:26 2012 +0000
| | 
| |     made example finally work
| | 
| | M	examples/undocumented/libshogun/base_map_parameters.cpp
| |   
| * commit ba30fa53a41ecc14232cf932e09b4c36351a4b1a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jan 8 15:33:14 2012 +0000
| | 
| |     removed debug messages
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 89ced59d56eaffc2e0996f99da520e7e60e7ae01
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jan 8 15:03:13 2012 +0000
| | 
| |     initial add of map_parameters example/test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_map_parameters.cpp
| |   
| * commit 5ed083ab790e408b1712867b7b66b7d49fe8b0eb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jan 8 15:02:15 2012 +0000
| | 
| |     temp state
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit b1d78f85eb8b2f2b61dc3800f7d13282a05761b4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jan 8 15:01:57 2012 +0000
| | 
| |     removed CSGObject restriction again
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit f45cb9ca64a3a6cd858f68e4f2dd3e67aff1f644
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jan 7 21:02:02 2012 +0000
| | 
| |     applied the changed made to CMath::qsort and CMath::binary_search in
| |     order to avoid SGVector<non-numeric-type>
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 196e31a5906849c013b766b11f70337edd42e916
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jan 6 16:50:12 2012 +0000
| | 
| |     commented out all debug messages for now
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit eeb92df954a4a99b7d5904d45678bd3680175849
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jan 6 16:18:26 2012 +0000
| | 
| |     temporarily excluded SGObjects from parameter mapping for now
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit 2e7c753ff448e4cf1c2e0108684a731419f859c4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 5 15:27:49 2012 +0000
| | 
| |     -introduced one_to_one_migration_prepare method
| |     -usage of the new allocate_data_from_scratch method in load_file_parameter
| |     -removal of unused variables
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 8d278904b47ae16035698db0e6d490924812efe2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 5 15:26:29 2012 +0000
| | 
| |     introduced one one_to_one_migration_prepare method
| | 
| | M	src/shogun/base/SGObject.h
| |   
| * commit 0a64d30b2520be85530589fbd7a72ae5a08ed227
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jan 5 15:25:18 2012 +0000
| | 
| |     initial add of allocate_data_from_scratch method which allocates data
| |     for a TParameter instance without an underlying SGOBJECT
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit ce262afdbdcea3411f96b1211d683f403849d0fe
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 4 15:31:23 2012 +0000
| | 
| |     -initial add of map_parameters
| |     -not using the additional constructor  of TParameter for setting m_delete_data
| |     anymore
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit e6476521b8282c7c3942386931fd497d150e19a3
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jan 4 15:30:38 2012 +0000
|   
|       removed the additional constructor for setting the m_delete_data flag again
|   
|   M	src/shogun/base/Parameter.cpp
|   M	src/shogun/base/Parameter.h
|  
* commit 2016b38da241de239b41fea9481c9c65bb003249
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Jan 8 02:24:09 2012 +0400
| 
|     Disable Conjugate Index classifier compilation without lapack/cblas
| 
| M	src/shogun/classifier/ConjugateIndex.cpp
| M	src/shogun/classifier/ConjugateIndex.h
|    
*   commit f7e78623d7e139bfaacaab5f941f245d2e0483a3
|\  Merge: edee519 0f99e12
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jan 7 13:58:05 2012 -0800
| | 
| |     Merge pull request #349 from karlnapf/master
| |     
| |     merge heikos load_file_parameter code
| |   
| * commit 0f99e12b4579af7c1225b60e453d881deb63cc6f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jan 7 20:47:47 2012 +0000
| | 
| |     made CMath::binary_search which works on an array of pointers not use
| |     an SGVector as parameter anymore
| | 
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/mathematics/Math.h
| |   
| * commit 750651d07e438efc166d6af704df747bc0125c3d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jan 7 20:41:54 2012 +0000
| | 
| |     changed CMath::qsort to use pointer to array of pointers and length
| |     instead of using SGVector
| | 
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/mathematics/Math.h
| |   
| * commit d05db533a985b038fe73e599188377d036a966c1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jan 4 15:55:47 2012 +0000
| | 
| |     fixed a semantical error in example
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameter.cpp
| |   
| * commit d800c23a7c53e035401bcf752abdddbd4b54630b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jan 3 14:15:15 2012 +0000
| | 
| |     added forgotten doxygen comment
| | 
| | M	src/shogun/base/SGObject.h
| |   
| * commit 7bb59fb4a3c0ab63fc69bba33ab38a5e00a40110
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 21:36:47 2012 +0000
| | 
| |     added test if array from load_file_parameters is sorted
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameters.cpp
| |   
| * commit 904843009484eece04b8f13a944b4f399babf88e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 21:24:51 2012 +0000
| | 
| |     added an example/test for load_file_parameters
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_load_file_parameters.cpp
| |   
| * commit e008c4846e12dbf248df04fd8486241995cebd68
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 21:13:13 2012 +0000
| | 
| |     load_file_parameters now has a customizable current version which is used
| |     instead of VERSION_PARAMETER (shogun flag)
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit dee74b219ceabe61b0580bf6dfafa2d99c3b293a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 20:49:31 2012 +0000
| | 
| |     initial add of load_file_parameters method
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit 992477e6707fa851016862df71d6d703a679bc31
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 20:49:14 2012 +0000
| | 
| |     added comparison operators for TParameter
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit 7fccc88ccb49da75fbd908ff5ec7883eb02a15f8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 21:14:15 2012 +0000
| | 
| |     fixed a typo in comment
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameter.cpp
| |   
| * commit b2cdae7e0a978d1b8220f72ae0f12e5d644fe7dc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Mon Jan 2 20:50:10 2012 +0000
| | 
| |     removed old debug code
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameter.cpp
| |   
| * commit 5e3390da4c9e48574f735223f2d38974b156ccf8
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Mon Jan 2 19:21:14 2012 +0000
|   
|       fixed a typo
|   
|   M	src/shogun/base/SGObject.cpp
|  
* commit edee5190b7c119b8492215a5f2022dc46c1321e4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jan 6 08:00:04 2012 +0400
| 
|     Fixed typos
| 
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
|  
* commit e07e5c8f8a5c94dd195614b1dd467dc22747808b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jan 6 07:56:36 2012 +0400
| 
|     Updated doc of dimensionality reduction toolkit
| 
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/EmbeddingConverter.h
| M	src/shogun/converter/HessianLocallyLinearEmbedding.h
| M	src/shogun/converter/Isomap.h
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalityPreservingProjections.h
| M	src/shogun/converter/LocallyLinearEmbedding.h
| M	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit 9b78d44ff7e2ba44f18c33b0ff89dadbbfc425c4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 5 17:27:14 2012 +0400
| 
|     Introduced classifier based on conjugate index
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/classifier_conjugateindex.cpp
| A	examples/undocumented/python_modular/classifier_conjugateindex_modular.py
| M	src/interfaces/modular/Classifier.i
| M	src/interfaces/modular/Classifier_includes.i
| A	src/shogun/classifier/ConjugateIndex.cpp
| A	src/shogun/classifier/ConjugateIndex.h
| M	src/shogun/machine/Machine.h
|  
* commit 3c9f1bcbe7612e5d53f99d52d17ea87c9ef2556f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 5 17:26:02 2012 +0400
| 
|     Added inverse matrix method for CMath
| 
| M	src/shogun/mathematics/Math.h
|  
* commit 20ae5d6d886d8bb47a6c4c2b02c90d362df399d8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Jan 5 00:15:22 2012 +0400
| 
|     Commented labels constructor
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
|  
* commit 8f9a79cb404b83876c80ede21b99b10fb417f6ba
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Jan 4 03:50:26 2012 +0400
| 
|     Removed 32bit integer labels constructor
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
|  
* commit a988f3443bea480c3ebc8bf315fe1821e510879f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Jan 4 03:27:22 2012 +0400
| 
|     Added int constructors for labels
| 
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
|  
* commit 399e0fdbccecd24bb3bb7616951d5fff77fe80fc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Jan 3 22:42:07 2012 +0400
| 
|     Fixed memsetting at SVM OCAS
| 
| M	src/shogun/classifier/svm/SVMOcas.cpp
|  
* commit cb2884e644c806de846a3251781edafbc33e05bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 2 21:30:42 2012 +0100
| 
|     fix documentation to fix doxygen warnings
| 
| M	src/shogun/base/ParameterMap.h
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/shogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 075cbaed1fa8d26e60e569e301027b2ad167182b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 2 20:25:07 2012 +0100
| 
|     fix warning - alloc uint8 instead of 'void'
| 
| M	src/shogun/base/SGObject.cpp
|  
* commit e2fd42621e2d4574550e5db4ae5013cee1466684
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 2 19:59:30 2012 +0100
| 
|     workaround build failure in csharp_modular
| 
| M	src/interfaces/modular/modshogun.i
| M	src/interfaces/modular/modshogun_ignores.i
|    
*   commit 2d874038cb0197d89be45837a3d3b6a7a822cb16
|\  Merge: ae1595d 70565b3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jan 1 13:49:19 2012 -0800
| | 
| |     Merge pull request #346 from karlnapf/master
| |     
| |     load_file_parameter
| |   
| * commit 70565b3e635535ec025663774149a3e547983042
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 20:26:34 2011 +0000
| | 
| |     removed debug messages
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 41c1660002428fff368bfaca7aa53a9f572c402a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 20:26:18 2011 +0000
| | 
| |     removed debug message
| | 
| | M	src/shogun/base/Parameter.cpp
| |   
| * commit 8a16bb973306bfc756d1247c9debc070919ef06d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 20:26:04 2011 +0000
| | 
| |     extended example/test by a sgobject scalar
| | 
| | M	examples/undocumented/libshogun/base_load_file_parameter.cpp
| |   
| * commit 4bf6cd0ec237dda66211941b5e2da92de6d81d8f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 18:46:20 2011 +0000
| | 
| |     added proper handling of PT_SGOBJECT scalars
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit bfa3217cb5cb68e745ff4246e433e44c297abf2c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 19:01:59 2011 +0000
| | 
| |     extended example/test by a sgobject
| | 
| | M	examples/undocumented/libshogun/serialization_basic_tests.cpp
| |   
| * commit 80e492f1d2eda8639b4a637e762cdefaba777222
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Dec 31 18:49:01 2011 +0000
| | 
| |     renamed an example wich will be extended soon
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/serialization_basic_tests.cpp
| | D	examples/undocumented/libshogun/serialization_vector_matrix.cpp
| |   
| * commit 37351ca3cdc4fda26dbb7d7695b3310b18752d96
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 23:01:24 2011 +0100
| | 
| |     removed a debug output and (hopefully) finished the load_file_parameter
| |     method
| | 
| | M	src/shogun/base/SGObject.cpp
| |   
| * commit 75bce7055b45e3c9f914ae8f8cc1fc0efe3ebd57
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 22:59:05 2011 +0100
| | 
| |     removed a debug output
| | 
| | M	src/shogun/base/ParameterMap.cpp
| |   
| * commit ad319f9dcb391a7c68520db970695b176c1b14ef
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 22:58:55 2011 +0100
| | 
| |     added a delete_data flag to TParameter (and a corresponding constructor),
| |     which allows to automatically delete data, data-pointer, and possible data
| |     length variables in the destructor
| |     (this is needed for migration)
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/base/Parameter.h
| |   
| * commit 23e54b19bc33dceda15a01f8465bc04c8ab66431
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 22:57:34 2011 +0100
| | 
| |     added example/test to load parameters from a file using mappings for
| |     param_infos
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/base_load_file_parameter.cpp
| |   
| * commit 0ee8aaea910a4db5dd0b4158b294f3050c71fb8d
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Dec 30 17:21:06 2011 +0100
|   
|       Here this comes again :)
|       Revert "oops, did not want to commit that yet"
|       
|       This reverts commit 849fd62fb379380edc8339e891e863e361f9e138.
|   
|   M	src/shogun/base/SGObject.cpp
|   M	src/shogun/base/SGObject.h
|    
*   commit ae1595d8ae683ebe4bd11d1408d8fd21708de6a2
|\  Merge: bd0b026 2d04117
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Dec 30 15:01:02 2011 -0800
| | 
| |     Merge pull request #345 from karlnapf/master
| |     
| |     fixed comile error for example
| |   
| * commit 2d04117c2cb0132df57b8b1e9c2f7665ebac1a15
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 17:07:30 2011 +0100
| | 
| |     oops, did not want to commit that yet
| |     Revert "initial add of load_file_parameter method"
| |     
| |     This reverts commit a37278bf34441a756d459b2096fb1da89044a96e.
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
| * commit e9d5190130b3832cb1f97b797d0af1ad5cc6bc82
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 17:05:20 2011 +0100
| | 
| |     merged two parameter map examples
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
| * commit 5900bcf3282f7988346073ebd99957ca8c0455f5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Dec 30 17:04:27 2011 +0100
| | 
| |     merged two parameter map tests/examples
| | 
| | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | D	examples/undocumented/libshogun/parameter_map.cpp
| |   
| * commit fcda14b1205f523cbb2560228884dbae54a97d81
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Fri Dec 30 16:23:51 2011 +0100
|   
|       initial add of load_file_parameter method
|   
|   M	src/shogun/base/SGObject.cpp
|   M	src/shogun/base/SGObject.h
|    
*   commit bd0b026e602cb83ef1533231a58a22b0941cc2fd
|\  Merge: 0830125 69724a2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Dec 28 13:47:17 2011 -0800
| | 
| |     Merge pull request #344 from karlnapf/master
| |     
| |     some work towards migration
| |   
| * commit 69724a28a6f1713be8bbf0e4fab04e5517b40356
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 28 22:36:22 2011 +0100
| | 
| |     comment change
| | 
| | M	src/shogun/base/ParameterMap.h
| |   
| * commit 671530771b81e9f456563c03d19a915b7ddf436e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 28 22:33:24 2011 +0100
| | 
| |     made to_string method const
| |     implemented a proper order on SGParamInfo (which fixes a bug)
| | 
| | M	src/shogun/base/ParameterMap.cpp
| | M	src/shogun/base/ParameterMap.h
| |   
| * commit 3c83f9f07f4d884a0ca487db2bca8e6a3f3d5bc7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Dec 28 22:32:44 2011 +0100
| | 
| |     added parameter map example/test
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/parameter_map.cpp
| |   
| * commit b39d42bbd64aa357d9c61100fe6ae18bd47d501f
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Dec 28 21:35:54 2011 +0100
|   
|       prepared parameter map for migration
|   
|   M	src/shogun/base/ParameterMap.cpp
|   M	src/shogun/base/ParameterMap.h
|  
* commit 083012558c98192950d3cf1af383450dc35565e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 25 21:51:15 2011 +0100
| 
|     add missing import os
| 
| M	examples/undocumented/python_modular/serialization_matrix_modular.py
|  
* commit 360df428c6322e0cbe208d5516036d152bfbd689
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 25 21:09:13 2011 +0100
| 
|     require 1GB java heap space
| 
| M	examples/undocumented/java_modular/check.sh
|  
* commit f5d0f0fb97c7dfd9814f6a5a9c2dd5dd8c4e2c16
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 24 21:23:55 2011 +0100
| 
|     fix path to cmdline testsuite
| 
| D	testsuite/cmdline/test.sg
| D	testsuite/cmdline/test_all.sh
| A	testsuite/cmdline_static/test.sg
| A	testsuite/cmdline_static/test_all.sh
|  
* commit 54a7dd84c8050efbbdd22abc69095897aba16b7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 23 09:09:30 2011 +0100
| 
|     convert example to use SGStringList<char> and modify the
|     get_modsel_names function to return a zero terminated string
| 
| M	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
| M	src/shogun/base/SGObject.cpp
|  
* commit 5d46cac0c1952d76e7932f0d3b87d0a30378e3dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 23 08:24:28 2011 +0100
| 
|     fix accidentally removed import_array() call upon %init.
|     
|     this fixes the 'all python_modular examples crash' issue
| 
| M	src/interfaces/modular/SGBase.i
|  
* commit fd197d398a533e9fef780966a5a50226c93e53d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 23 08:24:03 2011 +0100
| 
|     fix heikos wrongly committed data version - and commit the correct one again
| 
| M	data
|    
*   commit f79eadb3fae428b7ee176f74c8d41021b1e60181
|\  Merge: 8fa6f1f 30b4a43
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Dec 22 14:43:50 2011 -0800
| | 
| |     Merge pull request #343 from karlnapf/master
| |     
| |     changed internal storage of SGVector
| |   
| * commit 30b4a43af51b5917dbd426fe95b227e8a569a715
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 22 22:59:42 2011 +0100
| | 
| |     fixed a typo
| | 
| | M	examples/undocumented/libshogun/serialization_file_formats.cpp
| |   
| * commit f6277dc863b2c58fa83df021afd97bd305b6f6f4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 22 17:50:11 2011 +0100
| | 
| |     I thought this caused errors, but it doesnt
| |     Revert "Revert "SGVectors are represented as arrays internally now""
| |     
| |     This reverts commit b7c47282ec95d5384a790172e9eb3da26d283f9b.
| | 
| | M	data
| | M	src/shogun/base/Parameter.cpp
| |   
| * commit 68090dd12f98e2f762bc7d20356b28e76ee8e717
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Dec 22 17:48:38 2011 +0100
| | 
| |     Revert "SGVectors are represented as arrays internally now"
| |     
| |     This reverts commit b56b57f20a720113fe3c1e88deddeed9b67290c2.
| | 
| | M	data
| | M	src/shogun/base/Parameter.cpp
| |     
| *   commit 75b139d4816590fd9c46e4e6b0fc98351324982c
| |\  Merge: bb7d29b 66aecb7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 17:40:24 2011 +0100
| | | 
| | |     Merge branch 'master' of github.com:karlnapf/shogun
| | |    
| | * commit 66aecb72b4ce14e0d876aa05a958f4982ebb878c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 17:38:34 2011 +0100
| | | 
| | |     added serialization example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/serialization_vector_matrix.cpp
| | |    
| | * commit d61eeb79e8681a4a7a97f46de5e0a29c03a84704
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 17:38:20 2011 +0100
| | | 
| | |     renamed file
| | | 
| | | A	examples/undocumented/libshogun/serialization_file_formats.cpp
| | |    
| | * commit 58012aafe899c63b954463a68f52e9aae11d16d2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 16:51:37 2011 +0100
| | | 
| | |     SGVectors are represented as arrays internally now
| | | 
| | | M	data
| | | M	src/shogun/base/Parameter.cpp
| | |    
| * | commit bb7d29b04f4837cb6f8912b0dc25c6caf75d0477
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 17:38:34 2011 +0100
| | | 
| | |     added serialization example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | M	examples/undocumented/libshogun/serialization_vector_matrix.cpp
| | |    
| * | commit 4d594595dd2bb8b86c50c956fabd45f98eca602b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 17:38:20 2011 +0100
| | | 
| | |     renamed file
| | | 
| | | A	examples/undocumented/libshogun/serialization_file_formats.cpp
| | |    
| * | commit ca6750de69e7bbb7cb32e6412a295f4620e7d934
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Dec 22 16:51:37 2011 +0100
| | | 
| | |     SGVectors are represented as arrays internally now
| | | 
| | | M	data
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 8fa6f1f3f4f2d17642e64fe15887c6f22801992f
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Dec 22 22:47:31 2011 +0100
| |   
| |       use SGStringList<char> instead of SGVector<char*>
| |   
| |   M	src/shogun/base/SGObject.cpp
| |   M	src/shogun/base/SGObject.h
| |   
* | commit ea58b4b94395a148f2445cc67e3fa2072073aa73
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Dec 22 17:34:50 2011 +0100
|   
|       add missing ';'
|   
|   M	src/interfaces/modular/SGBase.i
|  
* commit b4ccc4293c7f0b6702d16518f395d017c6e399bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 19 10:56:17 2011 +0100
| 
|     fix warnings about nk not being used
| 
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
|  
* commit 2f8739aab47ad4f779906f684eb5bd402f5a04b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 19 10:55:45 2011 +0100
| 
|     remove 'inline' declaration from .cpp file
| 
| M	src/shogun/machine/KernelMachine.cpp
|  
* commit c416e10475d2e571a9f2cf48ca72608c7f38377e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 18 17:44:37 2011 +0100
| 
|     convert pickle supporter functions from python to C to support new swig -builtin flags
| 
| M	src/interfaces/modular/SGBase.i
| M	src/interfaces/modular/modshogun.i
|  
* commit 194e21062cbbfd40002c46f5308dc7d8177c9e00
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 18 17:43:02 2011 +0100
| 
|     beautifications
| 
| M	src/shogun/io/SerializableFile.cpp
|  
* commit 80c48ed8189bcb9939b2df7dbbe22efc8181ebd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 18 17:42:14 2011 +0100
| 
|     add function to read whole file into buffer
| 
| M	src/shogun/io/File.cpp
| M	src/shogun/io/File.h
|  
* commit 582e3b1943a21b4f05be480446ef1019597661e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 18 17:41:23 2011 +0100
| 
|     ignore Converter.i
| 
| M	.gitignore
|  
* commit 88ca3d9ecd4267f4c0362d9450c4ca1e1c9ecb78
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Dec 17 15:11:25 2011 +0400
| 
|     Mentioned paper on DiffusionMasp
| 
| M	src/shogun/converter/DiffusionMaps.h
|  
* commit 9cb79abcc28a57145667e3d6997856a8be1e478a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Dec 15 22:43:10 2011 +0400
| 
|     Mention forgotten author of C#
| 
| M	src/NEWS
|  
* commit 18a8e4b36d94863b6512502875cc37854fc2927b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 14 00:47:03 2011 +0100
| 
|     use RbConfig instead of Config for ruby
| 
| M	src/configure
|  
* commit b84585a894ee61d6030bb9e001d27865e9d11e55
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 13 13:56:15 2011 +0100
| 
|     update news for sg 1.2.0
| 
| M	src/NEWS
|  
* commit 8c55bfb51aa777472f9b3b47ca07d54d6072a032
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 13 13:39:19 2011 +0100
| 
|     fix host arch detection and use newly created assert_version function to check for swig and doxygen versions
| 
| M	src/configure
|  
* commit 5c68fe7f92504de7693c9d360da783e6bc359c72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 13 13:11:27 2011 +0100
| 
|     remove %pythoncode from interfaces/modular/Classifier.i and replace it
|     with a native implementation
| 
| M	src/interfaces/modular/Classifier.i
| M	src/shogun/classifier/svm/SVM.h
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/machine/KernelMachine.h
|  
* commit f7368cf9c6eddf3739e8e7f8b57f4ed15741e821
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 13 13:10:32 2011 +0100
| 
|     require swig 2.0.4 and enable -builtin -modern -modernargs for python modular
| 
| M	src/configure
|  
* commit ab56eaffc8e6d68317e223df80c9ced6e01f4d20
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 22:54:25 2011 +0100
| 
|     improve make release script
| 
| M	Makefile
|  
* commit b64ccb90650e04f8382acde22ee5fbbc3ed9d61c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 22:52:29 2011 +0100
| 
|     fix Makefile.template for the case where no git repository is available (aka in release tarballs)
| 
| M	src/Makefile.template
|  
* commit dc139eff4aacaaca165413a69be2964a3cc97d42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 20:21:25 2011 +0100
| 
|     updated reference documentation
| 
| M	doc/Doxyfile_cn
| M	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ExamplesModularCSharp.mainpage
| M	doc/pages/ExamplesModularJava.mainpage
| M	doc/pages/ExamplesModularLua.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesModularRuby.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
|  
* commit cc5cbf128342f9e701bdbfd067005e18c3f1fdf3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 17:41:25 2011 +0100
| 
|     Preparing for new Release shogun_1.1.0
| 
| M	doc/Doxyfile
|  
* commit c6f96e24f2d8e9fe3502e23cb541e3a04dfd918d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 17:38:31 2011 +0100
| 
|     fix testsuite paths
| 
| M	src/Makefile.template
|  
* commit b7f8a17d9c7ccf701e53a272336dbdb13900de14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 17:34:52 2011 +0100
| 
|     fix set_subkernel_weights for wd* kernels
| 
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/shogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 313da0ce91b0e9a7efae8b47894511ffa6f31572
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 17:30:18 2011 +0100
| 
|     use 2-norm for mkl regression R example
| 
| M	examples/undocumented/r_static/mkl_regression_sine.R
|  
* commit 174c45538e24790aa2d79076e9a130251a7d9eb6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 17:02:06 2011 +0100
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 9cadbc08fd9dd9f18b626eb879f322320b30acfc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 08:21:21 2011 +0100
| 
|     Mention osx / cygwin build fixes in NEWS.
| 
| M	src/NEWS
|  
* commit 715cdd993894089021af068654e1c29fcf4eb797
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 12 08:17:23 2011 +0100
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 87a3e265f0adc8db895e1ec6aa706c9fcb6b0da8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Dec 12 01:01:59 2011 +0400
| 
|     Updated news
| 
| M	src/NEWS
|  
* commit 9d379eb7de76d4f8937c0326bcfd46b627710427
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 10 23:17:57 2011 +0100
| 
|     use <atlas/clapack.h> as the include path instead of requiring
|     /usr/include/atlas in includepath
| 
| M	src/configure
| M	src/shogun/classifier/svm/pr_loqo.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit c9f49e9b16d778a82ab28d2052f6e4e0c9b49c44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 10 22:42:36 2011 +0100
| 
|     add /usr/include/atlas to include paths
| 
| M	src/configure
|    
*   commit eca47025aad0468ea4a246fa9a68f9d9ce472855
|\  Merge: 18a068e 08f58e5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Dec 9 12:35:36 2011 -0800
| | 
| |     Merge pull request #331 from romovpa/master
| |     
| |     Configure fixed to build matlab_static on Darwin, x86_64
| |   
| * commit 08f58e5e9febe62e2e0f66fd34afc59bd180c15f
| | Author: Peter Romov <peter@romov.ru>
| | Date:   Fri Dec 9 15:54:48 2011 +0400
| | 
| |     fix configure for Darwin-x86_64, matlab_static
| | 
| | M	src/configure
| |   
* | commit 18a068e06714bfe11af40b5bbe12f7c7782e528e
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Dec 9 21:16:25 2011 +0100
|   
|       fix compilation for lua modular on cygwin
|       
|       remove double '/' on make install; compile and install with
|       make install DESTDIR=
|       when you are on cygwin to fix issue with special //name/
|   
|   M	src/Makefile.template
|   M	src/configure
|  
* commit 8d7f76c3c906847140e10726f922bd99989f7c8d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Dec 8 17:00:08 2011 +0400
| 
|     Updated words embedding application
| 
| M	applications/dimreduction/words_embedding.py
|  
* commit dd63607a89b622719f2c6c4c871897618bc4a000
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Dec 8 16:42:47 2011 +0400
| 
|     Update data
| 
| M	data
|  
* commit 1efc8689f9b867bab569763f4f4b87452d82b920
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 19:56:26 2011 +0100
| 
|     fix other places to work with SGVector
| 
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/ui/SGInterface.cpp
|  
* commit a3126f1ab5a3d875b6b61cce0163dce4f316063a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 19:56:13 2011 +0100
| 
|     adjust example to SGVector style
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit bb010f4bb7c5e8814cfb7541b1997b38e0390c6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 17:40:31 2011 +0100
| 
|     disable hmm parallel learning/structures and thus parallel hmm
|     training/application at all.
|     
|     this is a temporary workaround to not see crashes and wrong results when
|     learning
| 
| M	src/configure
|  
* commit 741530ed6384b145178556292c790d9fa228b353
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 7 10:07:21 2011 +0100
| 
|     add get/set functions for combined kernel weights (forgotten sgvector transition)
| 
| M	src/shogun/kernel/CombinedKernel.cpp
| M	src/shogun/kernel/CombinedKernel.h
|  
* commit 050aad2035e68c367dda509e7bd97f5708433e2f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:41:02 2011 +0400
| 
|     Added testing info for MDS into python example
| 
| M	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
|  
* commit cd5e904d8645484f4e79bc53505a89a8b83f8a24
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:19:50 2011 +0400
| 
|     Changed tolerance to max
| 
| M	testsuite/python_modular/tester.py
|  
* commit ae5ea3b8ec10ce807af4c926a85182b6eb815cf5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:12:52 2011 +0400
| 
|     Faces application to dimreduction, added word embedding example
| 
| A	applications/dimreduction/faces_embedding.py
| A	applications/dimreduction/words_embedding.py
| D	applications/faces/faces_embedding.py
|  
* commit 36198fb307ce7beef632f4f882e5b794a20c8f33
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Dec 6 01:05:58 2011 +0400
| 
|     Added tolerance option for tester
| 
| M	testsuite/python_modular/tester.py
|  
* commit e1e74f02a43f77a6414e66dddd76712032ec4b89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 5 20:28:17 2011 +0100
| 
|     require new data for regression tests
| 
| M	data
|  
* commit 633147d99d21d251d7ceb06c771ea1855677e7cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 5 20:17:45 2011 +0100
| 
|     fix library and evaluation test
| 
| M	examples/undocumented/python_modular/evaluation_thresholds_modular.py
| M	examples/undocumented/python_modular/library_time.py
|  
* commit bbb39e09792967acce594f136e04df85b47d3243
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Dec 5 01:03:09 2011 +0400
| 
|     Added embed kernel for the kernel LLE
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 0e9a565262764afb96471eb9a38231e1c11e8739
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Dec 4 02:28:21 2011 +0400
| 
|     Reconstruction error setting support for the KLLE
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
|    
*   commit 9ad8550f5ec0f0b92d7bddd891d0e62cb4688931
|\  Merge: f6648cc ac09d36
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Dec 4 02:27:36 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit ac09d365987f731677e71b8ab690e30c7ec4665b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Dec 2 23:52:45 2011 +0100
| | 
| |     ignore further unuseable functions
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit f6648ccdb40dad73843cab51a5d4e86d81533c33
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sun Dec 4 02:27:04 2011 +0400
|   
|       Added sgmatrix constructor for the CustomDistance
|   
|   M	src/shogun/distance/CustomDistance.cpp
|   M	src/shogun/distance/CustomDistance.h
|  
* commit 6d6e2ded9f0d2b827d69e015be24521b46b1014c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Dec 3 00:01:06 2011 +0400
| 
|     Restored normalization at Difmaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit 36fcef777d2d3aafb4f1b845dab19fdd62068c0c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Dec 2 23:26:45 2011 +0400
| 
|     Added KLTSA swissroll example
| 
| A	examples/undocumented/python_modular/graphical/kltsa_swissroll.py
|  
* commit 01dfaa41b55a1600d82f25ec4123da2a8f940ede
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 10:37:36 2011 +0100
| 
|     fix documenation path in README
| 
| M	README
|  
* commit a9f71a8d3d36a4132a8e8a0f9ac9660374a70931
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 08:34:24 2011 +0100
| 
|     add ignores for sparsefeatures
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 1b1e644e2ce73d6be19193fb8911a86bdd453849
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 06:01:11 2011 +0100
| 
|     add ignores from simple features
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit c5cd88780f1945cb779837927c572195e1844575
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 2 00:14:14 2011 +0100
| 
|     add a few ignores
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 6d5a28a0909e5b2e74d3e8961c6853a263527909
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 23:38:05 2011 +0100
| 
|     document undocumented function
| 
| M	src/shogun/kernel/MultitaskKernelNormalizer.h
|  
* commit 0af0449eed8694aa42133efd6d2717a377ec4b71
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 23:37:32 2011 +0100
| 
|     just call compute_rec1 in compute()
| 
| M	src/shogun/kernel/ANOVAKernel.cpp
|  
* commit 79b7d11b96f910145ab7434b7fb8d28519746d00
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 08:16:41 2011 +0100
| 
|     move private variables to the bottom of the .h file
| 
| M	src/shogun/lib/DynamicObjectArray.h
|  
* commit f8739aeff602c374a0c49ab2b56cc7c4ea7b2c94
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 1 08:15:30 2011 +0100
| 
|     prefix ignores with shogun:: namespace where required
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 47e0f3d4f08a38d53991d6a70911c9f724f80fd9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:48:51 2011 +0100
| 
|     fix syntax error in ignores
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 9548910d78fd1b0b5c3217764a1103425830969f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:57 2011 +0100
| 
|     ignore a number of irrelevant functions
| 
| M	src/interfaces/modular/modshogun_ignores.i
|  
* commit 3b67024ccf0e95b54f38e810047d35c2cfcc9eba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:36 2011 +0100
| 
|     define sparse feature vector template
| 
| M	src/interfaces/modular/Library.i
|  
* commit b8b773db357a941ea29dc1f97ae74dcb3bbe6635
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:24:02 2011 +0100
| 
|     add get_sparse_feature_vector support in python typemaps
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 6eb1832903fe91f744175afa7fae9dc4058d4e80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 20:23:43 2011 +0100
| 
|     coding style fixes
| 
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 2d777aab985991927b64f1196ed64cddee94d650
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 14:04:35 2011 +0100
| 
|     add example for thresholds
| 
| A	examples/undocumented/python_modular/evaluation_thresholds_modular.py
|  
* commit ee37cb0a9b1c949a7d8eafc9bdb543cc71ec82c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 30 13:52:41 2011 +0100
| 
|     add option to get corresponding bias-thresholds together with PRC / ROC curve
| 
| M	src/shogun/evaluation/PRCEvaluation.cpp
| M	src/shogun/evaluation/PRCEvaluation.h
| M	src/shogun/evaluation/ROCEvaluation.cpp
| M	src/shogun/evaluation/ROCEvaluation.h
|  
* commit ceb9469a3f57ba8e2252e759b5bbb956851eabb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 29 23:14:40 2011 +0100
| 
|     Overhaul python typemaps
|     
|     - check that we don't have a list as input
|     - refactor code to call static functions to only have minimal
|     functionality inside the actuall typemap
|     - re-enable boolean type by default to fix crasher
| 
| M	src/configure
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 6630a210ad94f3cb1fe13179c2787efdd8c68400
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 29 16:06:49 2011 +0400
| 
|     Warn that LTSA is slower than KLTSA with linear
| 
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
|  
* commit 486b93782a2690f963990ddec452515be1e78a77
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 02:07:02 2011 +0400
| 
|     Updated naming, fixed makefile
| 
| M	examples/undocumented/libshogun/Makefile
| D	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| A	examples/undocumented/libshogun/preprocessor_randomfouriergauss.cpp
|  
* commit e5a87166f3ec7c5faad217769b5301b7c1b2860a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 01:56:02 2011 +0400
| 
|     Removed mkl memleak test that is hardly requiring GLPK
| 
| D	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 27c9fdb52fe2c9618ec4cd031d46b65003827667
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 27 01:52:52 2011 +0400
| 
|     Fix descriptions naming for preprocessors moved to converters before
| 
| A	examples/descriptions/modular/converter_hessianlocallylinearembedding.txt
| A	examples/descriptions/modular/converter_isomap.txt
| A	examples/descriptions/modular/converter_kernellocallylinearembedding.txt
| A	examples/descriptions/modular/converter_laplacianeigenmaps.txt
| A	examples/descriptions/modular/converter_locallylinearembedding.txt
| A	examples/descriptions/modular/converter_localtangentspacealignment.txt
| A	examples/descriptions/modular/converter_multidimensionalscaling.txt
| D	examples/descriptions/modular/preprocessor_hessianlocallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_isomap.txt
| D	examples/descriptions/modular/preprocessor_kernellocallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_laplacianeigenmaps.txt
| D	examples/descriptions/modular/preprocessor_locallylinearembedding.txt
| D	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| D	examples/descriptions/modular/preprocessor_multidimensionalscaling.txt
|  
* commit 567851bcbedefb6b81f4e976d9a6954e234cc05c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 23 20:05:46 2011 +0100
| 
|     get ruby back to work
|     
|     - add configure option --ruby to be able to specify the ruby version to be used
|     - use rb_cObject instead of ruby_class to fix undefined symbol error
|     - beautify example
| 
| M	examples/undocumented/ruby_modular/check.sh
| M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	src/Makefile.template
| M	src/configure
| M	src/interfaces/modular/SGBase.i
|  
* commit 02333b7ff10cb6fe106961eabd7f8557d44d6c40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 23 08:52:54 2011 +0100
| 
|     rb_require narray on modshogun module load
| 
| M	src/Makefile.template
| M	src/interfaces/modular/SGBase.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit a08478927a955df8c6c73fced1459ac219646e88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 22:45:04 2011 +0100
| 
|     don't link against narray.so but instead dlopen narray
| 
| M	src/Makefile.template
| M	src/configure
| M	src/interfaces/modular/SGBase.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit f762a27464d6d478d36c95108c5b046637031dc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 20:24:45 2011 +0100
| 
|     use glpk and 1 norm on this example
| 
| M	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit 8c760f5944ed109743d034931d23ba5ace9ba17a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 07:57:22 2011 +0100
| 
|     fix mkl example
| 
| M	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit e28cd97355c984bb0d3bfd67aea506ce17493376
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 22 07:55:42 2011 +0100
| 
|     Detect gem installed narray upon configure
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit a08c41eb3e93a463aca3bb74eca74b15267ad3aa
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 22 00:34:52 2011 +0400
| 
|     Removed kpca test from makefile
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit e93b29dfcb797e71b2913c1153e95ea4e79161b1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 19 20:37:44 2011 +0400
| 
|     Added MKL memleak test
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/mkl_memleak_test.cpp
|  
* commit fb82436a100e3eaf8a54fb65b0bae29846504ef8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 15 19:48:55 2011 +0100
| 
|     fix lib/versionstring.h creation on cygwin
| 
| M	src/Makefile.template
|  
* commit 2806e2545a950a8a9d0863cb95cb73bc76755c1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 15 19:48:46 2011 +0100
| 
|     white space beautifications
| 
| M	src/configure
|  
* commit ee9a0ccb3d15f07ce2610b807af47f9801a93d32
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 20:27:03 2011 +0100
| 
|     enable set_shifts in wds examples
| 
| M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
|  
* commit f79aa493b7e300b98e9c4e7e10ef80733b6d5414
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 20:25:40 2011 +0100
| 
|     use strcmp for string comparison in ruby typemaps
| 
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit 2e6c369f511da803b7093090d58193fc3601f736
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 14 09:01:30 2011 +0100
| 
|     use free_matrix instead of destroy_matrix and adjust swig in typemaps
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
| M	src/interfaces/java_modular/swig_typemaps.i
| M	src/interfaces/lua_modular/swig_typemaps.i
| M	src/interfaces/octave_modular/swig_typemaps.i
| M	src/interfaces/python_modular/swig_typemaps.i
| M	src/interfaces/ruby_modular/swig_typemaps.i
| M	src/shogun/kernel/CustomKernel.h
|  
* commit f5e86d59a7cafc0ddf08d87d27cf6615bb006b55
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Nov 14 00:55:26 2011 +0400
| 
|     Update NEWS
| 
| M	src/NEWS
|  
* commit 9e619e02cbde6b188904bb95de6bb4c934ad096d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 12 01:39:53 2011 +0400
| 
|     Fixes memory leak on custom kernel creation
| 
| M	src/shogun/kernel/CustomKernel.h
|  
* commit df4ade0093a49ca13ac54e623193bbda22320475
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 12 00:53:40 2011 +0400
| 
|     Fixed kernel get kernel matrix routine
| 
| M	src/shogun/kernel/Kernel.h
|  
* commit 8a0d751e8572e71997f9793995dddcbf7dc9be8a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 11 20:57:50 2011 +0100
| 
|     Fix compilation under cygwin and for octave 3.4.x
| 
| M	src/configure
| M	src/interfaces/octave_static/OctaveInterface.cpp
|  
* commit a5b28578e304f62ff71306a6c74b571f04a3b31c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 10 22:13:02 2011 +0100
| 
|     fix example failures under osx / vector lib detection
| 
| M	src/configure
|  
* commit 45f29e494d2652cd16b3998335cc44b2ca66019a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 8 01:02:31 2011 +0400
| 
|     Fix kernel handling in kernel pca
| 
| M	src/shogun/preprocessor/KernelPCA.cpp
|  
* commit 7c44829c4548ead992f2d6a967a35e9778ae9444
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 8 00:27:44 2011 +0400
| 
|     Few doc warnings removed
| 
| M	src/shogun/kernel/CombinedKernel.h
| M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit ebf6e89b8a79c5b6ab66afc521f60135771ef34a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 20:00:56 2011 +0100
| 
|     fix dotfeatures bug, intended check is 0<=num<=get_num_vectors()
| 
| M	src/shogun/features/DotFeatures.cpp
|  
* commit 9fdb4c5a1f3e40592c8fb7ab83f78959c5ba533e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 14:52:38 2011 +0100
| 
|     include alphabet before features to fix swig errors
| 
| M	src/interfaces/modular/Features.i
|  
* commit 0f23195e917102d427b8678d415f01e63e19a43c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 7 14:38:43 2011 +0100
| 
|     no longer link examples with -lblas or the like
|     
|     Instead hide glpk / blas /lapack etc library calls in .cpp files (instead of having them
|     visible in the respective .h file)
| 
| M	examples/undocumented/libshogun/Makefile
| M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| M	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
|  
* commit b7941eced199ac977142a1e657e36f4d692e21fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:38:06 2011 +0100
| 
|     export only sg / shogun and fix r example
| 
| M	examples/undocumented/r_static/mkl_regression_3sine_waves.R
| M	src/.r-install.sh
|  
* commit c697586bf263d556d0d1dc399d2c4524f75a1b21
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Nov 7 00:29:06 2011 +0400
| 
|     Optimized LLEs using reformulation with alignment
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 7a19c45149634af58b058aa968519d67e564485d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:25:03 2011 +0100
| 
|     add forgotten newline in r install
| 
| M	src/.r-install.sh
|  
* commit fc172114ba7a9c1a2cc24548bfb8ce1e63fb9cef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 21:05:36 2011 +0100
| 
|     add a NAMESPACE file for R
| 
| M	src/.r-install.sh
|  
* commit 1820596b7dbde17d93a6f7dbb6d74c06698e9e0d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 6 20:48:46 2011 +0100
| 
|     depend on R 2.10.0 in r installation - and don't use 2.10.0 but 2.10 in
|     Rdepends2 to hopefully fix an issue with R 2.14.0's library() function.
| 
| M	src/.r-install.sh
|  
* commit b6df00ef02566b69a5589aa2647fbea61277c262
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Nov 6 17:12:56 2011 +0400
| 
|     Added warning to not use parallel LTSA with old LAPACK
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocalTangentSpaceAlignment.h
|  
* commit 1daecf16cfd87278718143d49f8b86ea19fce337
| Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| Date:   Sat Nov 5 22:01:38 2011 +0000
| 
|     temporary added include to compile again
|     (string include was recently removed out of Kernel.h)
| 
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
|  
* commit b5a38060ea792d8c4b61cec51c7ea07519ee0503
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 5 19:58:51 2011 +0100
| 
|     introduce MeanAbsoluteError
| 
| M	src/interfaces/modular/Evaluation.i
| M	src/interfaces/modular/Evaluation_includes.i
| A	src/shogun/evaluation/MeanAbsoluteError.cpp
| A	src/shogun/evaluation/MeanAbsoluteError.h
|  
* commit 9c5167f827ddd81db5198e458cf70f9f14222844
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:43:51 2011 +0400
| 
|     Added LPP python modular example
| 
| A	examples/undocumented/python_modular/converter_localitypreservingprojections_modular.py
|  
* commit d8f77acc400fc6173a150b7ba7439bf02e32c294
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:42:15 2011 +0400
| 
|     Optimized KLTSA
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
|  
* commit 6a3714ae646cc8037811bf8eb2cee8ece77b801d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:41:46 2011 +0400
| 
|     Optimized LTSA
| 
| M	src/shogun/converter/LocalTangentSpaceAlignment.cpp
|  
* commit 7b9295283a3c47732c0ca42037685da36725dd5a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Nov 5 19:39:40 2011 +0400
| 
|     Removed float lapack wrappers
| 
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
| M	src/shogun/mathematics/lapack.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit c79b5a418ace60c2d643cb73491a7997cd0198ac
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Nov 4 23:06:56 2011 +0400
| 
|     fixed arpack libshogun test
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
|  
* commit 8384bd8d62081e8c71652b609101c24a7513b941
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 4 19:46:37 2011 +0100
| 
|     fix configure for octave
| 
| M	src/configure
|  
* commit 55404c60f56fed7c392571a74854dfb1c9123fa3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 2 20:52:13 2011 +0100
| 
|     beautify configure and hopefully fix a number of race conditions
| 
| M	src/configure
|  
* commit f94007773e29373e5d97c79ac1614780fbdc3e7b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Nov 2 01:36:19 2011 +0400
| 
|     Introduced LPP (Locality Preserving Projections) converter
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_localitypreservingprojections.cpp
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
| A	src/shogun/converter/LocalityPreservingProjections.cpp
| A	src/shogun/converter/LocalityPreservingProjections.h
|  
* commit 8172eeb26fd56bbec7dd0fec8f2560d141e1f8e9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Nov 2 00:07:20 2011 +0400
| 
|     Extracted embedding construction algorithms into subroutine
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit 8ef972a20e78500025ca00e50eab061029506f27
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 1 23:26:51 2011 +0400
| 
|     Updated NEWS
| 
| M	src/NEWS
|  
* commit b6d980bae541657f3ca50162706e475d89e7641e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Nov 1 20:52:31 2011 +0400
| 
|     Mention disadvantage of auto k for locally linear embedding
| 
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 55f2a9c29a08956cdad9309a781913e5ea97021d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 30 00:52:46 2011 +0400
| 
|     Fixed spacings at SGObject
| 
| M	src/shogun/base/SGObject.cpp
| M	src/shogun/base/SGObject.h
|  
* commit bd26cc620a2a5f69aae4edddacc51555a33f009f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 29 00:30:16 2011 +0200
| 
|     fix an error in the lua typemaps (checking for the typecode without using strcmp)
| 
| M	src/interfaces/lua_modular/swig_typemaps.i
|  
* commit 9685b3c9bf033acaefdd884c3bf9438b1ee2b9bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:50:51 2011 +0200
| 
|     fix various compiler warnings and errors occurring with clang++
| 
| M	src/shogun/base/class_list.cpp.py
| M	src/shogun/base/class_list.cpp.templ
| M	src/shogun/classifier/mkl/MKL.cpp
| M	src/shogun/classifier/vw/VwRegressor.cpp
| M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| M	src/shogun/distance/Distance.h
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/SimpleFeatures.h
| M	src/shogun/features/StringFeatures.h
| M	src/shogun/io/File.h
| M	src/shogun/io/HDF5File.h
| M	src/shogun/io/MemoryMappedFile.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/memory.cpp
| M	src/shogun/lib/memory.h
| M	src/shogun/preprocessor/DecompressString.h
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 220067de117f29682b7bab70cd9b4a0c71cd80a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:49:52 2011 +0200
| 
|     fix java modular typemap to not use  foo x[y] but foo* x= ...
| 
| M	src/interfaces/java_modular/swig_typemaps.i
|  
* commit adcbba22bbd10f15a8373e4f96469f47536afc10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 23:49:18 2011 +0200
| 
|     by convention name SimpleRealPreprocessor just RealPreprocessor etc
| 
| M	src/interfaces/modular/Preprocessor.i
|  
* commit f021af91b26ee0c4d885fd94d0e44d7d0abadfc3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 01:01:30 2011 +0400
| 
|     Matched KLLE and LLE neighborhood methods
| 
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
|  
* commit 904433c68509bbe543c2a7cada53c5db84f9f3a7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:47:35 2011 +0400
| 
|     Fixed wrong embed method of Laplacian Eigenmaps
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit b0d47c9ba975b8bcbc867623d9612ef4ef4d042d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:38:08 2011 +0400
| 
|     Fixed multidimensional scaling apply method naming
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
|  
* commit 41453c08155b3ada7206a2b4900dd0cfa2a835ec
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 29 00:34:35 2011 +0400
| 
|     Improved java converter examples
| 
| M	examples/undocumented/java_modular/converter_isomap_modular.java
| M	examples/undocumented/java_modular/converter_locallylinearembedding_modular.py
| M	examples/undocumented/java_modular/converter_multidimensionalscaling_modular.java
|  
* commit 63f227330df65d925102e3e4dd93e1d7032d2dbf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 28 17:59:30 2011 +0200
| 
|     Improve configure
|     
|     - detect glpk, atlas on rpm based distributions in /usr/lib*/atlas
|     - print a warning when jblas is not found that examples won't work
| 
| M	src/configure
|  
* commit e5da3dc8a16b88933c84244da6b90f6fe635d4dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 27 20:38:00 2011 +0200
| 
|     move the %inline parts of the code doing dynamic casts back into the
|     respective classes
| 
| M	src/interfaces/modular/Kernel.i
| M	src/shogun/kernel/CombinedKernel.h
| M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/shogun/kernel/MultitaskKernelNormalizer.h
| M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit a528c68f98bb7ab2af1e8f9d294b927571385d6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 26 22:10:55 2011 +0200
| 
|     use static functions for helpers
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit 59346e2dfa11546e102059f907e9e0692e5ea4c7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 26 23:51:42 2011 +0400
| 
|     Added kernel constructor for KLTSA
| 
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
|  
* commit 5695d590f66da8a36c9f66fc951f1e6bdddf507b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:26:18 2011 +0400
| 
|     Improved faces dimreduction application
| 
| M	applications/faces/faces_embedding.py
|  
* commit 2e49f2f61a8217f97810f0a514a5995749d188d8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:55 2011 +0400
| 
|     Added embed kernel to DiffusionMaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/DiffusionMaps.h
|  
* commit acfa012d88500deb1aa5be1bb79f0dda6f7a9395
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:31 2011 +0400
| 
|     Added embed to distance to LaplacianEigenmaps
| 
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
|  
* commit e2bdcb9301be784c5c274dff59e4276ae17bade7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:03:05 2011 +0400
| 
|     Changed apply to distance to embed to distance
| 
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
|  
* commit 2c2c640c9a7a9976feff9310259a636b131aa8c7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:02:45 2011 +0400
| 
|     Made EmbeddingConverter embed method virtual
| 
| M	src/shogun/converter/EmbeddingConverter.h
|  
* commit 7f612a238c4c61f740442067b51ff40d8fb66145
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 24 02:02:23 2011 +0400
| 
|     Fixed arpack wrapper doc
| 
| M	src/shogun/mathematics/arpack.h
|  
* commit cf3d2673a0674a66a1e041fdd763471f7f61c6a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 23 01:48:42 2011 +0200
| 
|     fix compiler errors occurring with clang
| 
| M	src/shogun/io/InputParser.h
| M	src/shogun/io/SimpleFile.h
|  
* commit ddbaebfbaf26500e564f6c0e54316d02b726dfbc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:35:45 2011 +0400
| 
|     Added warning of LLTSA and NPE are hardly applicable to very high-dimensional data
| 
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit c076bac5d77a5e646672bf007ad05b6b60498927
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:23:04 2011 +0400
| 
|     Removed normalization from DiffusionMaps
| 
| M	src/shogun/converter/DiffusionMaps.cpp
|  
* commit 6e09484fe3f3a0c2bdce24b867b4097b2de60f35
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 21:20:07 2011 +0400
| 
|     Added faces dimreduction and clustering application
| 
| A	applications/faces/faces_embedding.py
|  
* commit cc79f33039b8fdd83ad548e536e912d1e940cb2d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 19:56:05 2011 +0400
| 
|     Updated data
| 
| M	data
|  
* commit 83c1298df137a450a731764b8ecb5a4c4db00ff1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 19:27:54 2011 +0400
| 
|     Added references to LLTSA and NPE, updated NPE impl
| 
| M	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| M	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit 635313671b3c5380aa54e756f784499f9c0ea28a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 23 18:59:56 2011 +0400
| 
|     Improved arpack wrapper, introduced LLTSA
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_linearlocaltangentspacealignment.cpp
| A	examples/undocumented/python_modular/converter_linearlocaltangentspacealignment_modular.py
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| A	src/shogun/converter/LinearLocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/LinearLocalTangentSpaceAlignment.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/arpack.h
| D	src/shogun/mathematics/arpack_d.cpp
| D	src/shogun/mathematics/arpack_d.h
| D	src/shogun/mathematics/arpack_s.cpp
| D	src/shogun/mathematics/arpack_s.h
|  
* commit fb88b8ab9bbe54bf91f8c40a8e0d7d5f983252b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 05:38:42 2011 +0200
| 
|     Fix various configure problems under macosx
| 
| M	src/configure
|  
* commit c0daaa47d1a8ca207eaf7b98fa3379219ce2f327
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 00:54:21 2011 +0200
| 
|     attempt to fix compile warnings under osx
| 
| M	src/shogun/classifier/svm/SVMLight.h
| M	src/shogun/lib/common.h
|  
* commit f9248ec784bd34db86988f7c0cdfa85acf5bf2cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 21 00:53:03 2011 +0200
| 
|     compile interfaces in parallel again
| 
| M	src/Makefile
|  
* commit a1bd56837621d6f12f9fc4da58448f14212a0133
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 20 04:16:39 2011 +0200
| 
|     Add many more c# examples - thanks Daniel Korn for the port
| 
| A	examples/undocumented/csharp_modular/classifier_mpdsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_perceptron_modular.cs
| A	examples/undocumented/csharp_modular/clustering_hierarchical_modular.cs
| A	examples/undocumented/csharp_modular/clustering_kmeans_modular.cs
| M	examples/undocumented/csharp_modular/distance_braycurtis_modular.cs
| A	examples/undocumented/csharp_modular/distance_hammingword_modular.cs
| A	examples/undocumented/csharp_modular/distribution_histogram_modular.cs
| A	examples/undocumented/csharp_modular/distribution_hmm_modular.cs
| M	examples/undocumented/csharp_modular/features_snp_modular.cs
| A	examples/undocumented/csharp_modular/features_string_sliding_window_modular.cs
| A	examples/undocumented/csharp_modular/kernel_auc_modular.cs
| A	examples/undocumented/csharp_modular/kernel_combined_modular.cs
| A	examples/undocumented/csharp_modular/kernel_comm_ulong_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_fixed_degree_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_local_alignment_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_locality_improved_string_modular.cs
| M	examples/undocumented/csharp_modular/kernel_log_modular.cs
| A	examples/undocumented/csharp_modular/kernel_match_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_multiquadric_modular.cs
| A	examples/undocumented/csharp_modular/kernel_oligo_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_match_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_match_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_power_modular.cs
| A	examples/undocumented/csharp_modular/kernel_weighted_comm_word_string_modular.cs
| A	examples/undocumented/csharp_modular/mkl_binclass_modular.cs
| A	examples/undocumented/csharp_modular/mkl_multiclass_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_kernelpca_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_logplusone_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_pca_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_sortulongstring_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_sortwordstring_modular.cs
| A	examples/undocumented/csharp_modular/regression_libsvr_modular.cs
| A	examples/undocumented/csharp_modular/regression_svrlight_modular.cs
|  
* commit 07fc21c58b7806ded5d7a681a986995323c7403c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 13:21:09 2011 +0400
| 
|     Introduced NeighborhoodPreservingEmbedding (NPE)
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_neighborhoodpreservingembedding.cpp
| M	src/interfaces/modular/Converter.i
| M	src/interfaces/modular/Converter_includes.i
| A	src/shogun/converter/NeighborhoodPreservingEmbedding.cpp
| A	src/shogun/converter/NeighborhoodPreservingEmbedding.h
|  
* commit 56d9df50f5a594230ab0e7806191f34f5ad72d3a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 12:20:23 2011 +0400
| 
|     Added embed method to EmbeddingConverter, adapt structure
| 
| M	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| M	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_isomap.cpp
| M	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| M	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| M	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| M	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| M	examples/undocumented/python_modular/graphical/lle_auto_k.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
| M	src/shogun/converter/DiffusionMaps.cpp
| M	src/shogun/converter/DiffusionMaps.h
| M	src/shogun/converter/EmbeddingConverter.cpp
| M	src/shogun/converter/EmbeddingConverter.h
| M	src/shogun/converter/Isomap.cpp
| M	src/shogun/converter/Isomap.h
| M	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/converter/KernelLocallyLinearEmbedding.h
| M	src/shogun/converter/LaplacianEigenmaps.cpp
| M	src/shogun/converter/LaplacianEigenmaps.h
| M	src/shogun/converter/LocallyLinearEmbedding.cpp
| M	src/shogun/converter/LocallyLinearEmbedding.h
| M	src/shogun/converter/MultidimensionalScaling.cpp
| M	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 83630b1ba31d6692e68b28add50ebd42c9f8f115
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 18 12:18:42 2011 +0400
| 
|     Added checking for enabled types to preprocessor modular interfaces
| 
| M	src/interfaces/modular/Preprocessor.i
|  
* commit 6712a6316376e541307895f05c76b5b7f9fe1a10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 18 09:24:30 2011 +0200
| 
|     add int32_t and int64_t to default data types
| 
| M	src/configure
|  
* commit bd7a16293aee7da7ef39f03569dac7441db52ac6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 23:41:35 2011 +0200
| 
|     build shogun's interfaces by default only for a limited set of data types
|     
|     namely char,uint8_t,uint16_t,uint64_t,float32_t,float64_t
| 
| M	src/configure
| M	src/interfaces/modular/Distance.i
| M	src/interfaces/modular/Features.i
| M	src/interfaces/modular/IO.i
| M	src/interfaces/modular/Kernel.i
| M	src/interfaces/modular/Library.i
|  
* commit fac9028cbe79ee988ad51832321733fdb4401a68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 23:40:40 2011 +0200
| 
|     fix typo : -> ;
| 
| M	examples/undocumented/octave_modular/classifier_svm_serialize_modular.m
|  
* commit d73c0bf1854426497168a2721aec307b691b4b8b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 22:21:50 2011 +0200
| 
|     add example for svm serialization and octave.
|     
|     thanks Michael Herrmann for the contribution
| 
| A	examples/undocumented/octave_modular/classifier_svm_serialize_modular.m
|  
* commit 800b138371650b0bf9cf9848d33e8d33502ff907
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 22:06:11 2011 +0200
| 
|     add a get_file_descriptor() function to File
| 
| M	src/shogun/io/File.h
|  
* commit f12d5d53e1c4adbf3359a5ce210459aeabba6c53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 19:02:42 2011 +0200
| 
|     uninline code in CrossValidation.h
| 
| M	src/shogun/evaluation/CrossValidation.cpp
| M	src/shogun/evaluation/CrossValidation.h
|  
* commit ca71cf5b6167355b33595688a114ab5fa42e90a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 16:15:38 2011 +0200
| 
|     remove comments
| 
| M	src/.version.sh
|  
* commit cd862ec0120170250297c6c99cc2f0802f417f64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:44:15 2011 +0200
| 
|     mention how to obtain data
| 
| M	src/README.data
|  
* commit e234c30bf176e1df75feaa4ac59d9a22a99a7165
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:27:52 2011 +0200
| 
|     mention the most active GSoC authors in AUTHORS
| 
| M	src/AUTHORS
|  
* commit 56dc172641212ba7fa20d21bbf67bd5a1fa9becb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 15:13:49 2011 +0200
| 
|     add comment on how to use swig's 2.0.4 native python interface
| 
| M	src/configure
|  
* commit ac15a68848f2920befd48d6d30048e725331de86
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 13:34:08 2011 +0200
| 
|     add comment about newlines to coding conventions
| 
| M	src/README.developer
|  
* commit 90d2735b44f292b5a718ff5f170b27f370dbaa21
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 17 12:29:47 2011 +0200
| 
|     fix svmlight based modular examples to use try/catch
| 
| M	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| M	examples/undocumented/octave_modular/regression_svrlight_modular.m
|  
* commit 21fc0f75994f2042b62e6e91d7ff70ac331299c3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 15 12:47:06 2011 +0400
| 
|     Fixed lle_auto_k python graphical example
| 
| M	examples/undocumented/python_modular/graphical/lle_auto_k.py
|  
* commit edb85d9b0e21584cab842b3882e922d2bd440e7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 13:21:04 2011 +0200
| 
|     update news
| 
| M	src/NEWS
|  
* commit 17342a36a2adfcb7a2d7a85b5c034d479ccd36d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 09:53:04 2011 +0200
| 
|     fix octave examples
| 
| M	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| M	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
|  
* commit 226da8be8d036b634f12d8f84a965f3d5f4fc8c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 09:39:16 2011 +0200
| 
|     fix documentation
| 
| M	src/shogun/converter/Converter.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit cfafe5fc7ad7a50dfb0cdbc3d0d02b09a817d92a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 03:08:32 2011 +0400
| 
|     Fixed LLE doc
| 
| M	src/shogun/converter/LocallyLinearEmbedding.h
|  
* commit 91e439e58daa5e032e7a09b47ae63015639c3f6b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:57:09 2011 +0400
| 
|     Updated lua isomap example
| 
| A	examples/undocumented/lua_modular/converter_isomap_modular.lua
| D	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
|  
* commit 90c17d4ff538a09fa33e5220265261d6c6f873b2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:55:46 2011 +0400
| 
|     Removed Converter.i junk from python_modular
| 
| D	src/interfaces/python_modular/Converter.i
|  
* commit ca66f170c297c0c522776753a3a8b82ef978b92a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:54:19 2011 +0400
| 
|     Improved converters doc
| 
| M	src/shogun/converter/Converter.h
| M	src/shogun/converter/EmbeddingConverter.cpp
| M	src/shogun/converter/EmbeddingConverter.h
|  
* commit 8f7cc141ea0282240e1f7e0242ef70b127b23ba9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:47:26 2011 +0400
| 
|     Removed junk from the last commit
| 
| D	examples/undocumented/python_modular/vw_cache.dat.cache
|  
* commit e3231bbae1e13a264d829fba3647874b4126e247
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Oct 14 02:30:32 2011 +0400
| 
|     Introduced converters module, moved DR preprocessors to it, fixed examples, updated other classes according to changes
| 
| A	examples/undocumented/csharp_modular/converter_isomap_modular.cs
| A	examples/undocumented/csharp_modular/converter_locallylinearembedding_modular.cs
| A	examples/undocumented/csharp_modular/converter_multidimensionalscaling_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_isomap_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_locallylinearembedding_modular.cs
| D	examples/undocumented/csharp_modular/preprocessor_multidimensionalscaling_modular.cs
| A	examples/undocumented/java_modular/converter_isomap_modular.java
| A	examples/undocumented/java_modular/converter_locallylinearembedding_modular.py
| A	examples/undocumented/java_modular/converter_multidimensionalscaling_modular.java
| D	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| D	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| D	examples/undocumented/java_modular/preprocessor_multidimensionalscaling_modular.java
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/converter_diffusionmaps.cpp
| A	examples/undocumented/libshogun/converter_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_isomap.cpp
| A	examples/undocumented/libshogun/converter_kernellocallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_kernellocaltangentspacealignment.cpp
| A	examples/undocumented/libshogun/converter_laplacianeigenmaps.cpp
| A	examples/undocumented/libshogun/converter_locallylinearembedding.cpp
| A	examples/undocumented/libshogun/converter_localtangentspacealignment.cpp
| A	examples/undocumented/libshogun/converter_multidimensionalscaling.cpp
| D	examples/undocumented/libshogun/preprocessor_diffusionmaps.cpp
| D	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_isomap.cpp
| D	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
| D	examples/undocumented/libshogun/preprocessor_laplacianeigenmaps.cpp
| D	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| D	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
| D	examples/undocumented/libshogun/preprocessor_multidimensionalscaling.cpp
| A	examples/undocumented/python_modular/converter_diffusionmaps_modular.py
| A	examples/undocumented/python_modular/converter_hessianlocallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_isomap_modular.py
| A	examples/undocumented/python_modular/converter_kernellocallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_kernellocaltangentspacealignment_modular.py
| A	examples/undocumented/python_modular/converter_laplacianeigenmaps_modular.py
| A	examples/undocumented/python_modular/converter_locallylinearembedding_modular.py
| A	examples/undocumented/python_modular/converter_localtangentspacealignment_modular.py
| A	examples/undocumented/python_modular/converter_multidimensionalscaling_modular.py
| D	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
| D	examples/undocumented/python_modular/preprocessor_diffusionmaps_modular.py
| A	examples/undocumented/python_modular/preprocessor_dimensionreductionpreprocessor_modular.py
| D	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| D	examples/undocumented/python_modular/preprocessor_kernellocallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_kernellocaltangentspacealignment_modular.py
| D	examples/undocumented/python_modular/preprocessor_laplacianeigenmaps_modular.py
| D	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| D	examples/undocumented/python_modular/preprocessor_localtangentspacealignment_modular.py
| D	examples/undocumented/python_modular/preprocessor_multidimensionalscaling_modular.py
| A	examples/undocumented/python_modular/vw_cache.dat.cache
| A	examples/undocumented/ruby_modular/converter_hessianlocallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	src/Makefile.template
| A	src/interfaces/modular/Converter.i
| A	src/interfaces/modular/Converter_includes.i
| M	src/interfaces/modular/Preprocessor.i
| M	src/interfaces/modular/Preprocessor_includes.i
| M	src/interfaces/modular/modshogun.i
| A	src/interfaces/python_modular/Converter.i
| A	src/shogun/converter/Converter.h
| A	src/shogun/converter/DiffusionMaps.cpp
| A	src/shogun/converter/DiffusionMaps.h
| A	src/shogun/converter/EmbeddingConverter.cpp
| A	src/shogun/converter/EmbeddingConverter.h
| A	src/shogun/converter/HessianLocallyLinearEmbedding.cpp
| A	src/shogun/converter/HessianLocallyLinearEmbedding.h
| A	src/shogun/converter/Isomap.cpp
| A	src/shogun/converter/Isomap.h
| A	src/shogun/converter/KernelLocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/KernelLocalTangentSpaceAlignment.h
| A	src/shogun/converter/KernelLocallyLinearEmbedding.cpp
| A	src/shogun/converter/KernelLocallyLinearEmbedding.h
| A	src/shogun/converter/LaplacianEigenmaps.cpp
| A	src/shogun/converter/LaplacianEigenmaps.h
| A	src/shogun/converter/LocalTangentSpaceAlignment.cpp
| A	src/shogun/converter/LocalTangentSpaceAlignment.h
| A	src/shogun/converter/LocallyLinearEmbedding.cpp
| A	src/shogun/converter/LocallyLinearEmbedding.h
| A	src/shogun/converter/MultidimensionalScaling.cpp
| A	src/shogun/converter/MultidimensionalScaling.h
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
| D	src/shogun/preprocessor/DiffusionMaps.cpp
| D	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| D	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| D	src/shogun/preprocessor/Isomap.cpp
| D	src/shogun/preprocessor/Isomap.h
| D	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| D	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| D	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/KernelPCA.h
| D	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| D	src/shogun/preprocessor/LaplacianEigenmaps.h
| D	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| D	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| D	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| D	src/shogun/preprocessor/LocallyLinearEmbedding.h
| D	src/shogun/preprocessor/MultidimensionalScaling.cpp
| D	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/preprocessor/PCA.h
|  
* commit 78c869446f14dc958fa368e2e2e56cf4eba555c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 14 00:13:00 2011 +0200
| 
|     fix documentation of clean_feature_vectors
| 
| M	src/shogun/features/StringFeatures.h
|  
* commit 6356f267c5a42d00a3041519afee9f8b26d037e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:34:43 2011 +0200
| 
|     fix static octave examples
| 
| M	examples/undocumented/matlab_and_octave/classifier_lpboost.m
| M	examples/undocumented/matlab_and_octave/classifier_lpm.m
| M	examples/undocumented/matlab_and_octave/kernel_linearbyte.m
|  
* commit 18a93b9c4ed78280317dce0c5b8f97f544a29861
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:34:18 2011 +0200
| 
|     always set dot feature property on init
| 
| M	src/shogun/features/DotFeatures.cpp
|  
* commit 12a51735895c3741bbcce54e9d6117ef736590cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:33:42 2011 +0200
| 
|     introduce more efficient cleanup_feature_vectors function
| 
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
|  
* commit a6e49bb8f7b569ccf155df3b82cb16dc535f1462
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:31:39 2011 +0200
| 
|     fix broken free_feature_vector call in wdsvmocas
| 
| M	src/shogun/classifier/svm/WDSVMOcas.h
|  
* commit 74bf29729a5ebedc27a5ce6df2b771fea2e7278f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 23:30:43 2011 +0200
| 
|     fix lhs / rhs mixup in free_feature_vector (how did this ever work?!)
| 
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1d5d860297a8cabc3fe3b2a94d4936307a9ea3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 13 11:10:03 2011 +0200
| 
|     Fix a bug in cache_multiple_kernel_row that gets triggered when support vector regression is performed with svr light and multiple threads.
| 
| M	src/shogun/kernel/Kernel.cpp
|  
* commit 3e2add72db24a0f5f7392ba1df782760142e01a3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 12 23:45:48 2011 +0400
| 
|     Added automatic k choosing LLE example
| 
| A	examples/undocumented/python_modular/graphical/lle_auto_k.py
|  
* commit 363a4038a578fb76e682d6db4ed4ce4b25707dc4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 16:44:50 2011 +0200
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 49c5ef74e596f861e78eb8b98b5abe4e9cda4e3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 16:12:55 2011 +0200
| 
|     use SGVector<char> as workaround for SGVector<void>
| 
| M	src/shogun/features/Features.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
|  
* commit 2440e3a376abc7a491b304ef6207ae111d72d4ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 15:48:14 2011 +0200
| 
|     use SGVector<char> instead of SGVector<void> as a workaround
| 
| M	src/shogun/base/Parameter.cpp
|  
* commit f2e51da860bdc434441feb9477908e785c6c8b73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 12 06:37:14 2011 +0200
| 
|     fix elwms.so install
| 
| M	src/Makefile.template
|  
* commit 1d41eeb0cf9e26692852b83e38ecbe86655315db
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Oct 12 02:15:24 2011 +0400
| 
|     Added optimal k determination routines to LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit dbad0b5b45c555d41ac0e1ad41b414bb5ce8049c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 22:43:44 2011 +0200
| 
|     fix install permissions of jar / dll to be non-exec
| 
| M	src/Makefile.template
|  
* commit 8182e5c5201a673e313c1d2bbd0a924695e98b05
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 20:56:36 2011 +0200
| 
|     create jni dir on make install
| 
| M	src/Makefile.template
|  
* commit 184fcc0d911350ba017b01bdd09e59e5538253e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 19:21:15 2011 +0200
| 
|     fix ruby install dir
| 
| M	src/Makefile.template
|  
* commit 9b38b33c63f450ec4e777e2eaf45deea3b5cd116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 14:36:03 2011 +0200
| 
|     Create proper .dll's for csharp interface and add proper make install
|     targets for java and c# installing into /usr/lib/jni /usr/lib/cil/shogun
|     respectively
| 
| M	examples/undocumented/csharp_modular/check.sh
| M	src/Makefile.template
|  
* commit 01b75c8ea0c3a025e4789cc5a9b6d568b7b3f62c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 12:25:03 2011 +0200
| 
|     Fix installation
|     
|     - Add forgotten DESTDIR prefix to lua target
|     - Rename PYTHON_TARGET -> PYTHON_STATIC_TARGET etc
| 
| M	src/Makefile.template
|  
* commit dea9a1dee0f7da16ee4dc1818a587513e250e2b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 11 06:37:38 2011 +0200
| 
|     Fix elwms include in python/octave/r interfaces
| 
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/python_static/PythonInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
|  
* commit 5dd8dec208c54fff51f7e844b3c72be67639ecee
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 02:04:04 2011 +0400
| 
|     Fixed KLLE initialization
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit a92e6b460ff6bcc0725026bc3f02653072aefa44
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:39:00 2011 +0400
| 
|     Revert "Removed wrong copyrights from preprocessors developed after GSoC"
|     
|     This reverts commit f6d08c2226fd1b297744a4c7379fc7f180d6d60e.
| 
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
|  
* commit f6d08c2226fd1b297744a4c7379fc7f180d6d60e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:35:57 2011 +0400
| 
|     Removed wrong copyrights from preprocessors developed after GSoC
| 
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
|  
* commit 77efd4c71fa23a5f8b64fac1714976378efc620d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 10 23:04:50 2011 +0200
| 
|     Fix include paths for elwms interface.
| 
| M	src/interfaces/elwms_static/elwms.cpp
|  
* commit 00b7950c89654496a13ff289d9f264f5ff717204
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 11 01:12:07 2011 +0400
| 
|     Cleaned DR preprocessors, removed effective target dim computation
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/Isomap.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 85a967cd1fb02c29f08cf7d77cb8ac7bf302c845
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 18:33:48 2011 +0400
| 
|     BLASed KLLE a little
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 79758f39ad18a5891ab627af8b1a8b69abf31979
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 18:33:34 2011 +0400
| 
|     Added use_arpack option for LLE, BLASed it a little more
| 
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit fa8405f583c50cac2c3658920f0980b329382fe8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 00:02:39 2011 +0400
| 
|     Mention SUPERLU and KLTSA, KLLE
| 
| M	src/NEWS
|  
* commit e13b169780851d4bb5993e955986e6d332f838fe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 9 00:00:04 2011 +0400
| 
|     Initialized helper arrays at arpack wrapper to avoid warnings
| 
| M	src/shogun/mathematics/arpack_d.cpp
| M	src/shogun/mathematics/arpack_s.cpp
|  
* commit 884c74a9a1cf6ebe7685a2530c265915e2eeceab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 8 21:55:48 2011 +0200
| 
|     move regression .h functions to .cpp
| 
| M	src/shogun/regression/svr/LibSVR.cpp
| M	src/shogun/regression/svr/LibSVR.h
| M	src/shogun/regression/svr/SVRLight.cpp
| M	src/shogun/regression/svr/SVRLight.h
|  
* commit 9b410c9c7bdbc9f9b25fc9b43b9c15298e05bc92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 8 21:46:14 2011 +0200
| 
|     update NEWS file for 1.1
| 
| M	src/NEWS
|  
* commit e927318ac2592071d94e8da5eaa399c332b3d965
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 14:34:56 2011 +0400
| 
|     Moved code from .h to .cpp at CMachine
| 
| M	src/shogun/machine/Machine.cpp
| M	src/shogun/machine/Machine.h
|  
* commit 2382e0ca6850093f14000316bcabc4147ea370fc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 14:34:24 2011 +0400
| 
|     Added necessary Math.h include to GNB
| 
| M	src/shogun/classifier/GaussianNaiveBayes.h
|  
* commit 5a4f2de1582b4ef41497269bee111250a067f5dc
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 02:14:46 2011 +0400
| 
|     Finally added missing libshogun tests for DR preprocessors (no leaks)
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_diffusionmaps.cpp
| M	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_isomap.cpp
| M	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| M	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
| A	examples/undocumented/libshogun/preprocessor_laplacianeigenmaps.cpp
| M	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| M	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
| A	examples/undocumented/libshogun/preprocessor_multidimensionalscaling.cpp
|  
* commit b86e64fc35597b53b5c23f5254e8d695472ffcd1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:59:13 2011 +0400
| 
|     Added libshogun examples for KLTSA and KLLE
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_kernellocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_kernellocaltangentspacealignment.cpp
|  
* commit a4454cb83a42c569f1db04b1542c6f377a4ed88d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:58:02 2011 +0400
| 
|     Fixed memory leak at KLTSA
| 
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
|  
* commit 8d47d143e327bc18e84ce37f82cb6ca3fa7c3730
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:41:46 2011 +0400
| 
|     Got rid of memory error at DiffusionMaps
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
|  
* commit 5f2a5c84f636aa87b5bba374c3b1f0b437b6c3a6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 8 01:17:28 2011 +0400
| 
|     Added some notes to preprocessors
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit a0cc5518a9ccbd2870f01e7d03250ebb468d881b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 4 22:35:41 2011 +0400
| 
|     Introduced two shifts to customize LLE algorithm processing
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 5fab1f0d9b6aa4238c3dd4760a022df013c95bbb
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Oct 4 19:25:13 2011 +0400
| 
|     Made DimensionReductionPreprocessor class templated, adapted existing preprocessors to the new structure
| 
| M	src/interfaces/modular/Preprocessor.i
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/KernelPCA.cpp
| M	src/shogun/preprocessor/KernelPCA.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/PCA.cpp
| M	src/shogun/preprocessor/PCA.h
|  
* commit c0c4231f62e491fc1f02d34444ef4d4340e887e4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 04:41:47 2011 +0400
| 
|     Added C++ tests for LLE basic algorithms
| 
| M	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/preprocessor_hessianlocallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_locallylinearembedding.cpp
| A	examples/undocumented/libshogun/preprocessor_localtangentspacealignment.cpp
|  
* commit 2f5de9db6604ac8d0de6029da1f6fc73825c2b30
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 04:40:47 2011 +0400
| 
|     Various small fixes for LLE algorithms and dim reduction preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 63ecfe8045739f6aad5b8a8b93bbdc6e4be471e6
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 02:01:48 2011 +0400
| 
|     Introduced kernelized LTSA
| 
| A	examples/undocumented/python_modular/preprocessor_kernellocaltangentspacealignment_modular.py
| M	src/interfaces/modular/Preprocessor.i
| M	src/interfaces/modular/Preprocessor_includes.i
| A	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.cpp
| A	src/shogun/preprocessor/KernelLocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 88eeab8a0de197f86b6f9105fbcdd39d65c31db2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 01:59:48 2011 +0400
| 
|     Changed default kernel for DR preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 61c4de949875796d369eee3872c355a8804f9d64
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Oct 3 01:59:26 2011 +0400
| 
|     Unified Kernel LLE and LLE regularization parameter
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 9698ed39c8a10653430825b20fd613191f546f91
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:50:21 2011 +0400
| 
|     Some necessary improvements from the reverted commit
| 
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 15ebd97e8917cb6771526c4c3b2c554836a26e47
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:37:40 2011 +0400
| 
|     Revert "Improved multithreading codestyle, fixes some structure"
|     
|     This reverts commit 51eeb3d7aeaebeb41297d6db822a073d03679e6b.
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 51eeb3d7aeaebeb41297d6db822a073d03679e6b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:14:00 2011 +0400
| 
|     Improved multithreading codestyle, fixes some structure
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 246ccf6723429cc94b613b52f06c3bc7c6265877
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Oct 2 22:12:14 2011 +0400
| 
|     Fixed wrong destruction of DR preprocessor base class
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 85dadcf928260433d4b8e9c1a815d92456b897f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 1 19:44:42 2011 +0200
| 
|     move inline functions from .h to .cpp
| 
| M	src/interfaces/modular/Library.i
| M	src/interfaces/modular/SGBase.i
| M	src/shogun/base/Parallel.cpp
| M	src/shogun/base/Parallel.h
| M	src/shogun/base/Version.cpp
| M	src/shogun/base/Version.h
|  
* commit e338daa55cf4c1f8972cdcd57b4f58ad936849da
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 19:17:20 2011 +0400
| 
|     Fixed and improved KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
|  
* commit b4611da37437688e142f8a7d2a84ffc5c67867c8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:52:39 2011 +0400
| 
|     Moved code from .h to .cpp for NLDR preprocessors
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DiffusionMaps.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/Isomap.h
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 7314dafbad87c832ca566b62b1ae2189f5ea882a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:16:22 2011 +0400
| 
|     Fixed wrong effective target dimensionality threshold
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
|  
* commit 3d5000c40af6c15a699e4a3b3329b140eb01667f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:14:38 2011 +0400
| 
|     Added common.h include for arpack wrap impl
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit 3f082b3c2938273e57381e8cf6a868549669aefe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:02:07 2011 +0400
| 
|     Updated ARPACK and LAPACK libshogun examples
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit a945b61abe960bc54673c2fa6ee9f443e9fca43d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 16:01:37 2011 +0400
| 
|     Made arpack wrapper templated, updated preprocessors according to new structure
| 
| A	src/shogun/mathematics/arpack.cpp
| A	src/shogun/mathematics/arpack.h
| M	src/shogun/mathematics/arpack_d.cpp
| M	src/shogun/mathematics/arpack_d.h
| M	src/shogun/mathematics/arpack_s.cpp
| M	src/shogun/mathematics/arpack_s.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit af8865a8c205f26c009fa1c36eb55ac7be17edd5
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 03:19:31 2011 +0400
| 
|     Added dummy doc to avoid some warnings at HistogramIntersectionKernel and DataType
| 
| M	src/shogun/kernel/HistogramIntersectionKernel.h
| M	src/shogun/lib/DataType.h
|  
* commit 0f94ec8f886ec43448c8758df60ce421a9b54137
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 03:09:04 2011 +0400
| 
|     Implement clapack single precision routines wrappers
| 
| M	src/shogun/mathematics/lapack.cpp
| M	src/shogun/mathematics/lapack.h
|  
* commit 90d5064b7823449697c4e4dde618fc6620d439d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 1 00:58:23 2011 +0200
| 
|     fix multithreading error w/ svr light
| 
| M	src/shogun/kernel/Kernel.cpp
|  
* commit 57e582d88a3e62c7cff641bac22fac52c093bf74
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 02:14:20 2011 +0400
| 
|     Fixed wrong include at arpack double
| 
| M	src/shogun/mathematics/arpack_d.cpp
|  
* commit ea5f083bddd49ee43b74f4947f65d75f7e594e9d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Oct 1 00:08:53 2011 +0400
| 
|     Removed wrong include from KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|    
*   commit 236bb14beba9e5363fc9fe70f16c7f9147140b2b
|\  Merge: f55f818 b6d03b7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Oct 1 00:02:50 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit b6d03b7bd4a04046a1de279c0168fd7c184ede83
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 21:16:43 2011 +0200
| | 
| |     move inline functions from .h to .cpp
| | 
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/GMM.h
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/Hierarchical.h
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/clustering/KMeans.h
| |   
| * commit b18d7b5a9c7cdf592cea5d142cf6b2f184af537c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:26:13 2011 +0200
| | 
| |     fix type pkg-config2 -> pkg-config
| | 
| | M	src/configure
| |   
| * commit 1f78185a450c778305260b5deb99b59f097e2774
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:24:23 2011 +0200
| | 
| |     require pkg-config in configure
| | 
| | M	src/configure
| |   
| * commit 7bb0e515d077487ee96132dbf2630c48233f06a3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 30 08:16:23 2011 +0200
| | 
| |     add lgammal detection to configure
| | 
| | M	src/configure
| | M	src/shogun/mathematics/Math.h
| |   
* | commit f55f81887638779825807d401df041836ed167cb
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sat Oct 1 00:01:47 2011 +0400
|   
|       Added single precision LAPACK and ARPACK support, changed preprocessors according to new interface
|   
|   D	src/shogun/mathematics/arpack.cpp
|   D	src/shogun/mathematics/arpack.h
|   A	src/shogun/mathematics/arpack_d.cpp
|   A	src/shogun/mathematics/arpack_d.h
|   A	src/shogun/mathematics/arpack_s.cpp
|   A	src/shogun/mathematics/arpack_s.h
|   M	src/shogun/mathematics/lapack.cpp
|   M	src/shogun/mathematics/lapack.h
|   M	src/shogun/preprocessor/DiffusionMaps.cpp
|   M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
|   M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|   M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
|   M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|   M	src/shogun/preprocessor/MultidimensionalScaling.cpp
|  
* commit 95df0a502cdba1113153c6499cb952fa8b939c3d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Sep 30 03:25:09 2011 +0400
| 
|     Added support of target dimensionality reducing with negative target dimensionality, improved some issues at NLDR preprocessors
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 4889edc1bfb7b1ad81c2142264235412c337328d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 27 09:22:53 2011 +0200
| 
|     change API in histogram intersection kernel
|     
|     it can now be more conveniently inited with
|     
|     HistogramIntersectionKernel(f1,f2, beta, cachesz)
| 
| M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| M	src/shogun/kernel/HistogramIntersectionKernel.h
|  
* commit 42b836a76ca6846f1f212fb3fb167d087ef9fda0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 27 09:22:32 2011 +0200
| 
|     use all available CPUs by default
| 
| M	src/shogun/base/Parallel.cpp
|  
* commit 95c854ac7c337a69e2df47a33203cb8c57964e5e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 27 01:49:22 2011 +0400
| 
|     BLASed HLLE
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
|  
* commit fda999c4fceb7ff5a9fb0f91845439581b2800d7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 27 01:02:14 2011 +0400
| 
|     BLASed LTSA
| 
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
|  
* commit 2a16c52a28e165c10a3b369a24d9085d6e65882f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:50:45 2011 +0400
| 
|     Updated swissroll and hemisphere graphical NLDR examples
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit cf86e1b33264d3679e9838ea12ecc1585cfce0d7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:50:10 2011 +0400
| 
|     Removed junk ctime usage from Diffusion Maps preprocessor
| 
| M	src/shogun/preprocessor/DiffusionMaps.cpp
|  
* commit 0f76c54fd1b8f9b783f913b2a6decee0a76c3076
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:49:45 2011 +0400
| 
|     Refactored LLE algorithms for code reuse
| 
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 140237b64a27898db321a23a9491566da49595a4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:49:11 2011 +0400
| 
|     Added getters for distance and kernel at DR preprocessor
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit af3211a6e2c10154b90fd399caa4f46dbabd3137
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 26 23:17:22 2011 +0400
| 
|     Removed memory leak @ FibonacciHeap
| 
| M	src/shogun/lib/FibonacciHeap.cpp
|  
* commit 32b654e2d26856fab965a2f74872167aa08f1343
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 26 17:16:59 2011 +0200
| 
|     add two more c# examples translated by daniel
| 
| A	examples/undocumented/csharp_modular/features_snp_modular.cs
| A	examples/undocumented/csharp_modular/features_string_hashed_wd_modular.cs
|    
*   commit 0cadbbdb7ff2f4ecfd57f5fe0a7c852d53d53edb
|\  Merge: f7ee9b8 70eff01
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 17:10:36 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 70eff01c15159f1f7cde0a3c610061722b174d6f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 15:41:23 2011 +0200
| | 
| |     add toy example to illustrate how to use CTime
| | 
| | A	examples/undocumented/python_modular/library_time.py
| |   
| * commit 0c743b2d390c3d3949eb4954f35fbb8d2fdca4ae
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 15:24:59 2011 +0200
| | 
| |     parallelize all libsvm learners
| |     
| |     however, speedup is really only marginal.
| | 
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| |   
| * commit df28c58dd63dc9e9eb370eae83b5de8790926874
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:20:05 2011 +0200
| | 
| |     add virtual destructors to fix compiler warning
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit dce18b65da065ad08b440182c237e7e03447083a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:19:21 2011 +0200
| | 
| |     fix compiler warning about downcast to int32_t
| |     
| |     in the end we just change the variable type to float64_t
| | 
| | M	src/shogun/classifier/KNN.cpp
| |   
| * commit 138b2e179bb04b994d14183834604ea9a7733108
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 14:05:32 2011 +0200
| | 
| |     include <string> to fix compile error
| | 
| | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   
| * commit 7a631af221f726a63ff27b5d9866512d4a320bb5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 13:56:39 2011 +0200
| | 
| |     enable threaded parallelization for libsvm
| | 
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| |   
| * commit 13468eb26e2c5a209d71c3987d4ef2b096e8ff04
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 13:56:18 2011 +0200
| | 
| |     remove std::vector usage and replace it with SGVector
| | 
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   
| * commit b1043b038d139450a0d29407686daa3499851d44
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 26 09:34:29 2011 +0200
| | 
| |     disable compiler optimizations for swig interface
| | 
| | M	src/configure
| |     
* |   commit f7ee9b81e0bb25ec223bd1c5d19657a520fb1244
|\ \  Merge: e2a642d f634c62
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Sep 25 22:20:39 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit f634c62f48a886b67539bd8637e6fcd648dc6f13
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Sep 26 00:19:10 2011 +0400
| | 
| |     Removed unnecessary sse flags
| | 
| | M	src/configure
| |   
| * commit a6426c4ed5c068e494f6d4a04b57166f6734c970
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 23:37:39 2011 +0400
| | 
| |     Moved set/get code from .h to .cpp for DR preprocessors
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |     
* |   commit e2a642d6e33b4f30575df3426b01007ed3232eac
|\ \  Merge: 5f312d4 75685b6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Sep 25 19:54:55 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 75685b677239c01daa484e67323f219dc6b2563a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 19:40:24 2011 +0400
| | 
| |     Removed junk from LLE
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
| * commit 16e761af932fc17af25b65db851c335bbfd511e2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 19:09:38 2011 +0400
| | 
| |     Updated [] for SGMatrix and made it used by DR preprocessors
| | 
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
| * commit 26423550a1f8941a8f136967ee340fd0dd4afa02
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 18:31:07 2011 +0400
| | 
| |     Added [] for SGMatrix
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit d6ac38d223246afa999057c46e80f782cc69af73
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 18:29:57 2011 +0400
| | 
| |     Fixed mistype at configure, changed flags
| | 
| | M	src/configure
| |   
| * commit 134f8631a9dd57a900def42797fe93ea2a0604e2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 15:34:15 2011 +0400
| | 
| |     Improved memory usage efficiency in DR preprocessor
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
| * commit 3f81b07f4716de1b5c40f801d81a62bf071b7732
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 13:57:24 2011 +0400
| | 
| |     Added MSSE{1,2,3} flags to configure
| | 
| | M	src/configure
| | M	src/shogun/preprocessor/KernelPCA.h
| |   
| * commit 544c9206b3e5de44b56bb31c1a886f88a8a03e7e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Sep 25 01:12:31 2011 +0400
| | 
| |     Improved performance and fixed Diffusion Maps
| | 
| | M	src/shogun/preprocessor/DiffusionMaps.cpp
| |   
| * commit 330830136032e879a447b171e5185a49e90f2bb9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Sep 24 22:45:46 2011 +0400
| | 
| |     Introduced DiffusionMaps dimension reduction preprocessor
| | 
| | A	examples/undocumented/python_modular/preprocessor_diffusionmaps_modular.py
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | A	src/shogun/preprocessor/DiffusionMaps.cpp
| | A	src/shogun/preprocessor/DiffusionMaps.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit 5f312d43d99e897aa90969ff904097675cd3f230
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Sep 24 21:57:14 2011 +0200
|   
|       fix documentation in set_w
|   
|   M	src/shogun/machine/LinearMachine.h
|  
* commit be97a434d66387f8776e7a374c52e7f282731d3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 24 19:56:36 2011 +0200
| 
|     fix mixup of epsilon / tube epsilon in libsvr examples
| 
| M	examples/undocumented/java_modular/regression_libsvr_modular.java
| M	examples/undocumented/python_modular/regression_libsvr_modular.py
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
|  
* commit 826ff44c8d6cd0c6f70bb4c88e89d8e0fb6a59ee
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 24 21:35:53 2011 +0400
| 
|     Removed unnecessary includes in arpack.{cpp,h}
| 
| M	src/shogun/mathematics/arpack.cpp
| M	src/shogun/mathematics/arpack.h
|  
* commit 0b4a6dd10705f6e22e3dccc57fe877022728605d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 24 00:23:03 2011 +0400
| 
|     Fixed linecount in makefile
| 
| M	src/Makefile
|  
* commit 9780d20f576a165489176d0396466a1d4ea7f1d8
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Sep 23 22:17:09 2011 +0400
| 
|     Fixed get_w routine parameters in LinearMachine
| 
| M	src/shogun/classifier/svm/SVMLin.cpp
| M	src/shogun/machine/LinearMachine.h
| M	src/shogun/ui/SGInterface.cpp
|  
* commit dd4e99f31a0c899aeba63570bb482d434dd0e2cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 22 17:34:22 2011 +0200
| 
|     add new .cs examples from daniel
| 
| A	examples/undocumented/csharp_modular/classifier_gaussiannaivebayes_modular.cs
| A	examples/undocumented/csharp_modular/classifier_gmnpsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_gpbtsvm_modular.cs
| A	examples/undocumented/csharp_modular/classifier_knn_modular.cs
| A	examples/undocumented/csharp_modular/classifier_larank_modular.cs
| A	examples/undocumented/csharp_modular/classifier_lda_modular.cs
| A	examples/undocumented/csharp_modular/classifier_liblinear_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvmmulticlass_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvmoneclass_modular.cs
| A	examples/undocumented/csharp_modular/classifier_libsvn_modular.cs
|  
* commit b73b2c192f24bd7531fce82ebef5e01618f04ac9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 22 17:31:44 2011 +0200
| 
|     add some helper functions like clear vector, fill vector etc to SGVector
|     
|     This unfortunately causes conflicts w/ modelselection that using
|     SGVector<void>. Until ms is resolved to use sth else it will remain broken.
| 
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/lib/DataType.h
| M	src/shogun/mathematics/Math.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
|  
* commit b879040e1ca3146eb587e81f12d6a2b800f2c925
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Sep 22 00:21:12 2011 +0400
| 
|     Fixed doc in LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit 13a48a8e1a971f7e6525806f85ab5e83df4d23b3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Sep 22 00:20:58 2011 +0400
| 
|     Improved ARPACK+SUPERLU integration
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit c738a0082419f35324e2ecd5ab142ed453d87da6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 21:16:11 2011 +0200
| 
|     Revert "remove unneeded class definitions from .h files"
|     
|     This reverts commit ff5f5457454e0036465ad714cc10dad2949696c9.
| 
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/distance/CanberraMetric.h
| M	src/shogun/distance/HammingWordDistance.h
| M	src/shogun/distance/SparseEuclidianDistance.h
| M	src/shogun/distributions/HMM.h
| M	src/shogun/distributions/Histogram.h
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/CommUlongStringKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
| M	src/shogun/modelselection/ParameterCombination.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/structure/SegmentLoss.h
|  
* commit 00f777798e47982a81931c084d4cef323e11d98c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 20:49:56 2011 +0200
| 
|     add forgotten .cpp files
| 
| A	src/shogun/preprocessor/DecompressString.cpp
| A	src/shogun/preprocessor/DimensionReductionPreprocessor.cpp
| A	src/shogun/preprocessor/SimplePreprocessor.cpp
|  
* commit b3eccafdb9b99901303bd19934cd254f4bfd1fcb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 21 20:44:29 2011 +0200
| 
|     move implementions from .h to .cpp in preprocessors
| 
| M	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/preprocessor/DecompressString.h
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/MultidimensionalScaling.h
| M	src/shogun/preprocessor/SimplePreprocessor.h
|  
* commit 8e32b0de6276a98546786dac5d6c687584ccb7c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 20 21:11:41 2011 +0200
| 
|     fix wrong assertion in alphabet causing some model selection examples to fail
| 
| M	src/shogun/features/Alphabet.cpp
|  
* commit ff5f5457454e0036465ad714cc10dad2949696c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 20 21:02:03 2011 +0200
| 
|     remove unneeded class definitions from .h files
| 
| M	src/shogun/classifier/LDA.h
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/distance/CanberraMetric.h
| M	src/shogun/distance/HammingWordDistance.h
| M	src/shogun/distance/SparseEuclidianDistance.h
| M	src/shogun/distributions/HMM.h
| M	src/shogun/distributions/Histogram.h
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/CommUlongStringKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/modelselection/ModelSelectionParameters.cpp
| M	src/shogun/modelselection/ModelSelectionParameters.h
| M	src/shogun/modelselection/ParameterCombination.cpp
| M	src/shogun/structure/DynProg.h
| M	src/shogun/structure/PlifMatrix.h
| M	src/shogun/structure/SegmentLoss.h
|  
* commit 0af90765921161176a8d97b8f59d1c157095450e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:36:16 2011 +0400
| 
|     SUPERLU+ARPACK integration
| 
| M	src/shogun/mathematics/arpack.cpp
|  
* commit 8b3602c1f1c7eadfb9d791ec1df9f0ba1e215065
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:35:58 2011 +0400
| 
|     Restored regularization at Laplacian Eigenmaps
| 
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|  
* commit a176859827623526286c83ad64fc86e3160d2c68
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Sep 20 02:35:43 2011 +0400
| 
|     Restored regularization at LLE
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit f694cb6e16fab938bbcc0cfa5c52f9e7335005ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 19 22:20:09 2011 +0200
| 
|     Replace void foo(void) -> void foo() and finish template .h -> .cpp
|     transition in shogun/features/*
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/Parameter.cpp
| M	src/shogun/base/Parameter.h
| M	src/shogun/classifier/svm/GMNPLib.cpp
| M	src/shogun/classifier/svm/GMNPLib.h
| M	src/shogun/classifier/svm/GMNPSVM.cpp
| M	src/shogun/classifier/svm/GMNPSVM.h
| M	src/shogun/classifier/svm/GNPPLib.cpp
| M	src/shogun/classifier/svm/GNPPLib.h
| M	src/shogun/classifier/svm/LibLinear.cpp
| M	src/shogun/classifier/svm/LibLinear.h
| M	src/shogun/classifier/svm/MultiClassSVM.cpp
| M	src/shogun/classifier/svm/QPBSVMLib.cpp
| M	src/shogun/classifier/svm/QPBSVMLib.h
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMOcas.h
| M	src/shogun/classifier/svm/SVM_linear.cpp
| M	src/shogun/classifier/svm/SVM_linear.h
| M	src/shogun/classifier/svm/ScatterSVM.cpp
| M	src/shogun/classifier/svm/ScatterSVM.h
| M	src/shogun/classifier/svm/Tron.h
| M	src/shogun/classifier/svm/WDSVMOcas.cpp
| M	src/shogun/classifier/svm/WDSVMOcas.h
| M	src/shogun/classifier/svm/gpdt.cpp
| M	src/shogun/classifier/svm/gpdtsolve.cpp
| M	src/shogun/classifier/svm/gpdtsolve.h
| M	src/shogun/distance/KernelDistance.h
| M	src/shogun/distance/RealDistance.h
| M	src/shogun/distance/SimpleDistance.h
| M	src/shogun/distance/SparseDistance.h
| M	src/shogun/distance/StringDistance.h
| M	src/shogun/distributions/GHMM.h
| M	src/shogun/distributions/HMM.cpp
| M	src/shogun/distributions/HMM.h
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/DotFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.cpp
| M	src/shogun/features/Features.cpp
| M	src/shogun/features/Features.h
| M	src/shogun/features/HashedWDFeatures.cpp
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.cpp
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/SNPFeatures.cpp
| M	src/shogun/features/SparsePolyFeatures.cpp
| A	src/shogun/features/StreamingSimpleFeatures.cpp
| M	src/shogun/features/StreamingSimpleFeatures.h
| A	src/shogun/features/StreamingSparseFeatures.cpp
| M	src/shogun/features/StreamingSparseFeatures.h
| A	src/shogun/features/StreamingStringFeatures.cpp
| M	src/shogun/features/StreamingStringFeatures.h
| M	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
| A	src/shogun/features/StringFileFeatures.cpp
| M	src/shogun/features/StringFileFeatures.h
| M	src/shogun/features/WDFeatures.cpp
| M	src/shogun/io/AsciiFile.cpp
| M	src/shogun/io/BinaryFile.cpp
| M	src/shogun/io/BinaryFile.h
| M	src/shogun/io/HDF5File.cpp
| M	src/shogun/io/HDF5File.h
| M	src/shogun/io/MemoryMappedFile.h
| M	src/shogun/io/SerializableAsciiFile.cpp
| M	src/shogun/io/SerializableAsciiFile.h
| M	src/shogun/io/SerializableAsciiReader00.cpp
| M	src/shogun/io/SerializableAsciiReader00.h
| M	src/shogun/io/SerializableFile.cpp
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/io/SerializableHdf5File.cpp
| M	src/shogun/io/SerializableHdf5File.h
| M	src/shogun/io/SerializableHdf5Reader00.cpp
| M	src/shogun/io/SerializableHdf5Reader00.h
| M	src/shogun/io/SerializableJsonFile.cpp
| M	src/shogun/io/SerializableJsonFile.h
| M	src/shogun/io/SerializableJsonReader00.cpp
| M	src/shogun/io/SerializableJsonReader00.h
| M	src/shogun/io/SerializableXmlFile.cpp
| M	src/shogun/io/SerializableXmlFile.h
| M	src/shogun/io/SerializableXmlReader00.cpp
| M	src/shogun/io/SerializableXmlReader00.h
| M	src/shogun/io/SimpleFile.h
| M	src/shogun/kernel/AUCKernel.cpp
| M	src/shogun/kernel/AUCKernel.h
| M	src/shogun/kernel/Chi2Kernel.cpp
| M	src/shogun/kernel/Chi2Kernel.h
| M	src/shogun/kernel/CircularKernel.cpp
| M	src/shogun/kernel/CircularKernel.h
| M	src/shogun/kernel/ConstKernel.cpp
| M	src/shogun/kernel/CustomKernel.cpp
| M	src/shogun/kernel/CustomKernel.h
| M	src/shogun/kernel/DiceKernelNormalizer.h
| M	src/shogun/kernel/DistanceKernel.cpp
| M	src/shogun/kernel/DistanceKernel.h
| M	src/shogun/kernel/DistantSegmentsKernel.h
| M	src/shogun/kernel/DotKernel.h
| M	src/shogun/kernel/ExponentialKernel.cpp
| M	src/shogun/kernel/ExponentialKernel.h
| M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| M	src/shogun/kernel/FixedDegreeStringKernel.h
| M	src/shogun/kernel/GaussianKernel.cpp
| M	src/shogun/kernel/GaussianKernel.h
| M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| M	src/shogun/kernel/GaussianMatchStringKernel.h
| M	src/shogun/kernel/GaussianShiftKernel.cpp
| M	src/shogun/kernel/GaussianShortRealKernel.cpp
| M	src/shogun/kernel/GaussianShortRealKernel.h
| M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| M	src/shogun/kernel/HistogramIntersectionKernel.h
| M	src/shogun/kernel/HistogramWordStringKernel.cpp
| M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| M	src/shogun/kernel/InverseMultiQuadricKernel.h
| M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/shogun/kernel/OligoStringKernel.cpp
| M	src/shogun/kernel/PolyKernel.cpp
| M	src/shogun/kernel/PolyMatchStringKernel.cpp
| M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/shogun/kernel/PyramidChi2.cpp
| M	src/shogun/kernel/PyramidChi2.h
| M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| M	src/shogun/kernel/SNPStringKernel.cpp
| M	src/shogun/kernel/SNPStringKernel.h
| M	src/shogun/kernel/SparseKernel.h
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/kernel/SpectrumRBFKernel.h
| M	src/shogun/kernel/SphericalKernel.cpp
| M	src/shogun/kernel/StringKernel.h
| M	src/shogun/kernel/TStudentKernel.h
| M	src/shogun/kernel/TanimotoKernelNormalizer.h
| M	src/shogun/kernel/TensorProductPairKernel.cpp
| M	src/shogun/kernel/TensorProductPairKernel.h
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/shogun/lib/BitString.h
| M	src/shogun/lib/Cache.h
| M	src/shogun/lib/Compressor.cpp
| M	src/shogun/lib/Compressor.h
| M	src/shogun/lib/DataType.cpp
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/DynamicObjectArray.h
| M	src/shogun/lib/GCArray.h
| M	src/shogun/lib/List.h
| M	src/shogun/machine/DistanceMachine.h
| M	src/shogun/machine/KernelMachine.h
| M	src/shogun/preprocessor/DecompressString.h
|    
*   commit 8adcc9d17b6ec5c5230a916b9ad279a7a6c91b0e
|\  Merge: 1f6bf22 486a452
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 19 10:58:12 2011 -0700
| | 
| |     Merge pull request #322 from shelhamer/install_docs
| |     
| |     Updated install docs w/ current interfaces names, homebrew suggestion
| |   
| * commit 486a452317dd864680c02a35c2ee721e11d0bf9d
|/  Author: Evan Shelhamer <shelhamer@imaginarynumber.net>
|   Date:   Mon Sep 19 12:03:07 2011 -0400
|   
|       Updated install docs w/ current interfaces names, homebrew suggestion for OSX
|   
|   M	doc/pages/Installation.mainpage
|   M	src/INSTALL
|  
* commit 1f6bf22fdb81bb360e7221bcf61fc2ed1caadf8c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 18 14:01:07 2011 +0400
| 
|     Added doc for detect_dim routine
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
|  
* commit 828a0f4dfb6ebe4b07b4b9e1a733e49aa04df155
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 18 13:55:06 2011 +0400
| 
|     Various structure improvements for DR preprocessors
| 
| M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/Isomap.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| M	src/shogun/preprocessor/MultidimensionalScaling.h
|  
* commit 4e58cf6bec09eb12012f8f77ac6b76441ec8c734
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 23:51:13 2011 +0200
| 
|     move all implementations from .h to .cpp for sparse featrures
| 
| A	src/shogun/features/SparseFeatures.cpp
| M	src/shogun/features/SparseFeatures.h
|  
* commit 014a320e061acd150c1fe6b2fb781f11ee826c6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 22:51:02 2011 +0200
| 
|     move templated function implementations from .h to .cpp
| 
| A	src/shogun/features/StringFeatures.cpp
| M	src/shogun/features/StringFeatures.h
|  
* commit 9733645d0bd0deece1111ed8d6a3cf8fb38c784a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 22:01:00 2011 +0200
| 
|     remove a few obsolete includes and reformat code
| 
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit 84db31742e0920d6018683415ce0d13e6c6e4f6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 16 17:09:14 2011 +0200
| 
|     move templated code from SimpleFeatures.h to SimpleFeatures.cpp
| 
| M	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit 4a8d99d97cacbdf0d522d8d284e28dfe46f00014
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 23:29:36 2011 +0200
| 
|     Put implementations of templated functions into .cpp files
|     
|     This is possible when strictly following
|     http://www.parashift.com/c++-faq-lite/templates.html#faq-35.15
|     
|     i.e. we must know beforehand which types we want to support and specify
|     them like
|     
|     template class Foo<int32_t>;
|     
|     at the end of the .cpp file. This all holds true for feature classes
|     and should enable us to move all but definitions from .h files to
|     .cpp's.
| 
| A	src/shogun/features/SimpleFeatures.cpp
| M	src/shogun/features/SimpleFeatures.h
|  
* commit a49b0f6dd28b1a0738f0922565f386c195b3d494
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 23:08:33 2011 +0200
| 
|     remove unnecessary includes from .h files
| 
| M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| M	src/shogun/distance/CustomDistance.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/AttributeFeatures.cpp
| M	src/shogun/features/AttributeFeatures.h
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
| M	src/shogun/features/DummyFeatures.cpp
| M	src/shogun/features/DummyFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.cpp
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.h
| M	src/shogun/features/Labels.h
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/RealFileFeatures.cpp
| M	src/shogun/features/RealFileFeatures.h
|  
* commit 4f9566fdc5a099604f1ddbf2e3702368c4f81b42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:36:54 2011 +0200
| 
|     start to simplify typemaps - extracting all code into functions
| 
| M	src/interfaces/python_modular/swig_typemaps.i
|  
* commit c834d2bda34ad2a12662b392e1986ff4c767a3e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:35:03 2011 +0200
| 
|     remove remaining inline functions in features/
| 
| A	src/shogun/features/StreamingFeatures.cpp
| M	src/shogun/features/StreamingFeatures.h
| M	src/shogun/features/StreamingVwFeatures.cpp
| M	src/shogun/features/StreamingVwFeatures.h
|  
* commit 8b4ce6cd5e6d0d78da73892e1f8502853a05823c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 22:13:15 2011 +0200
| 
|     remove most inline functions in features
|     
|     - exceptions are some single line functions
|     - templated classes
| 
| M	src/shogun/features/Alphabet.cpp
| M	src/shogun/features/Alphabet.h
| M	src/shogun/features/AttributeFeatures.cpp
| M	src/shogun/features/AttributeFeatures.h
| M	src/shogun/features/CombinedDotFeatures.cpp
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/CombinedFeatures.cpp
| M	src/shogun/features/CombinedFeatures.h
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/DotFeatures.h
| A	src/shogun/features/DummyFeatures.cpp
| M	src/shogun/features/DummyFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/HashedWDFeatures.cpp
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/LBPPyrDotFeatures.cpp
| M	src/shogun/features/LBPPyrDotFeatures.h
| M	src/shogun/features/Labels.cpp
| M	src/shogun/features/Labels.h
| M	src/shogun/features/PolyFeatures.cpp
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/SNPFeatures.cpp
| M	src/shogun/features/SNPFeatures.h
| M	src/shogun/features/SparsePolyFeatures.cpp
| M	src/shogun/features/SparsePolyFeatures.h
| A	src/shogun/features/StreamingDotFeatures.cpp
| M	src/shogun/features/StreamingDotFeatures.h
| M	src/shogun/features/WDFeatures.cpp
| M	src/shogun/features/WDFeatures.h
|  
* commit 5fee0e674fb8542918dc330a60556244c58e1a00
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 20:04:29 2011 +0200
| 
|     mention that one should avoid inline functions
| 
| M	src/README.developer
|  
* commit 9c69c844443075c89ee6406f1d5de4088dc81e43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 15 20:03:50 2011 +0200
| 
|     fix comment type to get it integrated in doxygen
| 
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit 73e9943ee34e99bf2f2f3d932bf8d62a488eddf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 11 20:24:31 2011 +0200
| 
|     use axis tight to improve figure
| 
| M	examples/undocumented/python_modular/graphical/svm.py
|  
* commit b1edffbca7d091e3d51d9eaa6a11d902c40fdab5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 11 20:23:53 2011 +0200
| 
|     use CALLOC instead of MALLOC
| 
| M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
|  
* commit 5ef91ed1c9d5416877ac01feaf8099735c1f22e4
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:28:31 2011 +0400
| 
|     Updated KLLE
| 
| M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
|  
* commit 7e0438e57ff002322a0514d70b5644246b00cbaa
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:28:19 2011 +0400
| 
|     Removed unnecessary includes
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 613d9dc63a7786867a25eb940dec2b2b144f6f0a
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:05:31 2011 +0400
| 
|     Improved performance of locally linear embedding
| 
| M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| M	src/shogun/preprocessor/LocallyLinearEmbedding.h
|  
* commit f8944e0ff7046e284859c0ae7c3cab605aa76a1c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 11 01:03:54 2011 +0400
| 
|     Beautified dimreduction examples
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit f34ce2ca16d14e5051cac4fbe88f267f74be7dfd
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 10 17:31:31 2011 +0400
| 
|     Fixed typo in configure
| 
| M	src/configure
|  
* commit 41f17eae94da51f8013d4773ab86d41be225b84c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Sep 10 13:18:33 2011 +0400
| 
|     Added SuperLU detection
| 
| M	src/configure
|  
* commit 4c09886bdb5dff7264b99a0de460c2a9d22dc353
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 5 23:45:08 2011 +0400
| 
|     Doc improvements for evaluators
| 
| M	src/shogun/evaluation/BinaryClassEvaluation.h
| M	src/shogun/evaluation/Evaluation.h
| M	src/shogun/evaluation/MeanSquaredError.h
| M	src/shogun/evaluation/MulticlassAccuracy.h
| M	src/shogun/evaluation/PRCEvaluation.h
| M	src/shogun/evaluation/ROCEvaluation.h
|  
* commit 7f707b1965c042d14fb597e16e728ddb7420e3ab
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Sep 5 01:04:47 2011 +0400
| 
|     Cleaned base Preprocessor class
| 
| D	src/shogun/preprocessor/Preprocessor.cpp
| M	src/shogun/preprocessor/Preprocessor.h
|  
* commit d744130fa8fec2f5c72cbd410b06d7dbd2b68e39
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 4 14:36:57 2011 +0400
| 
|     Resolved HistogramWordStringKernel testsuite issue
| 
| M	src/shogun/kernel/HistogramWordStringKernel.cpp
|  
* commit 4c6174cc68085556a1b6178fecdc2d593f573746
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Sep 4 00:13:11 2011 +0400
| 
|     Changed data symlink to toy data
| 
| M	examples/documented/data
|  
* commit fbb28f974180bf62e3b4524fa2acf575d216970b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 2 20:14:26 2011 +0200
| 
|     removal of useless ruby examples
| 
| D	examples/undocumented/ruby_modular/MatrixTest.rb
| D	examples/undocumented/ruby_modular/VectorTest.rb
| D	examples/undocumented/ruby_modular/minimal_test.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
|  
* commit de95a2fe4862e488f697c30a3bf3862ede59a025
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 2 20:13:46 2011 +0200
| 
|     minor ruby example polishing
| 
| M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| M	examples/undocumented/ruby_modular/features_io_modular.rb
| M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| M	examples/undocumented/ruby_modular/load.rb
| M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
|    
*   commit 93413df7e44cb66c32cb48de8a3c5a70d7ab9b75
|\  Merge: 6bee4f4 cbe9c23
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 2 10:47:45 2011 -0700
| | 
| |     Merge pull request #321 from serialhex/master
| |     
| |     merging final batch of ruby examples
| |   
| * commit cbe9c236910345451ca7269e95c35d64ec40e25e
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Aug 31 08:10:40 2011 -0400
| | 
| |     got the rest of the examples working, modshogun.rb moved here and renamed to shogun_helpers.rb, just like the rest of the $LANG examples.  only one file giving me hell: features_io_modular.rb though it should work i get a "uninitialized constant Modshogun::HDF5File (NameError)" which means i didn't install something...
| | 
| | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | M	examples/undocumented/ruby_modular/VectorTest.rb
| | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| | M	examples/undocumented/ruby_modular/minimal_test.rb
| | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | A	examples/undocumented/ruby_modular/shogun_helpers.rb
| |   
* | commit 6bee4f4ba32cd365a0135870796bbf9816f67828
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Sep 2 08:59:11 2011 +0200
| | 
| |     add instructions on how to get the data
| | 
| | A	src/README.data
| |   
* | commit 74f4793e4f4c22b91a16d9dd87a33e7fa107aa88
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 20:18:12 2011 +0200
| | 
| |     improve release script
| | 
| | M	Makefile
| |   
* | commit 0d8f97ac684aa03837d894b0b3ea535b53158f12
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 08:56:08 2011 +0200
| | 
| |     fix Makefile
| | 
| | M	Makefile
| |   
* | commit 246e694f5128d50edae0100e4535477256c3c363
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 01:02:35 2011 +0200
| | 
| |     Preparing for new Release shogun_1.0.0
| | 
| | M	src/ChangeLog
| |   
* | commit 96711a6f878696551d5de07f4e7e94fb5a0bfd58
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 01:01:46 2011 +0200
| | 
| |     fixes to tag release target
| | 
| | M	Makefile
| |   
* | commit d4ef7b537a28c11eb48ff56636d1d421c98ff47b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Sep 1 00:58:12 2011 +0200
| | 
| |     updated changelog
| | 
| | M	src/ChangeLog
| |   
* | commit 13d738f9453e301676c1ad5a82b0747ae288a0db
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:14:04 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 3210c3f1ba04e3d295b6ffbad3c76f0023b29d45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:12:00 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit de6f67984c2e776f97df049f5f8f3dbc9e0168f2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:03:20 2011 +0400
| | 
| |     Removed junk from clustering tester
| | 
| | M	testsuite/python_modular/clustering.py
| |   
* | commit 3d25031e1606f86d353de72e3c3b43b083af7ab2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 02:02:25 2011 +0400
| | 
| |     Fixes for LogPlusOne preprocessor
| | 
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| |   
* | commit 99966f1ce50b6417ff2a65d6519a14f8ad62f9c9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 23:58:29 2011 +0200
| | 
| |     improve release script again
| | 
| | M	Makefile
| |   
* | commit 67b6b842a12d84a7e7494dc5a36af12292aa1669
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 01:38:07 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit f6512c764b6933bff9bd30a8109a26e72b256249
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 01:37:52 2011 +0400
| | 
| |     Fixes for clustering tester
| | 
| | M	testsuite/python_modular/clustering.py
| |   
* | commit 4240e558dd8303e97984aa073721daee7ca59694
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 23:23:38 2011 +0200
| | 
| |     improved release script for work with git
| | 
| | M	Makefile
| |   
* | commit ea275ed63d9b654b8a5c709a1ef01a0955d428a5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 22:32:00 2011 +0200
| | 
| |     update data
| | 
| | M	data
| |   
* | commit 7f13b81348bdee075f0f5b6c7685541790f1b71c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 00:07:57 2011 +0400
| | 
| |     Updated data
| | 
| | M	data
| |   
* | commit 16227f53436fec3868a4a52aa15207c6cdf7b7a3
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Sep 1 00:06:32 2011 +0400
| | 
| |     Fixed preprocessor testsuite
| | 
| | M	testsuite/python_modular/preprocessor.py
| |   
* | commit a8f57f03121e621b33c45cb08337f49a3e07fcf0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 21:27:24 2011 +0200
| | 
| |     exclude tests directory form old-tests
| | 
| | M	testsuite/octave_modular/test_all.sh
| | M	testsuite/python_static/test_all.sh
| | M	testsuite/r_modular/test_all.sh
| | M	testsuite/r_static/test_all.sh
| |   
* | commit b5f27b9ea0e4338102c8e9264457dcbfb25b75fb
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 21:53:29 2011 +0400
| | 
| |     Transitioned copy feature matrix routine to SGMatrix
| | 
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/features/SimpleFeatures.h
| |   
* | commit 419a67bc3898d0380e9ddc7267907b6e6a4dae27
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 19:19:36 2011 +0200
| | 
| |     fix a few regressions
| | 
| | M	testsuite/python_modular/kernel.py
| | M	testsuite/python_modular/test_all.sh
| | M	testsuite/python_modular/test_svm_kernel_multiple.py
| |   
* | commit fc4625c8c4bbc5439a2db6819f4de27b877cd7a1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:45:45 2011 +0200
| | 
| |     further SGVectorization of dynprog
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 6823fdbe61cfcd6efc30f1351bcc114a7441bf6e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:20:24 2011 +0200
| | 
| |     SGVectorize dynprog function
| | 
| | M	src/Makefile.template
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 8e2b540a63e24515f3e0440976b813cda20c55eb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 31 18:13:35 2011 +0200
| | 
| |     ignore tests
| | 
| | M	testsuite/matlab_and_octave/test_all.sh
| |   
* | commit 2e4b2b5fec916629e64651821ac59dbcc25fae5f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 19:54:28 2011 +0400
| | 
| |     Fixed esvm at easysvm
| | 
| | M	applications/easysvm/esvm/experiment.py
| | M	applications/easysvm/esvm/utils.py
| |   
* | commit be81d77f3d965585f5bccefcdb2c79028306a0b9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 31 18:50:57 2011 +0400
| | 
| |     Updated interfaces in readme
| | 
| | M	src/README
| |   
* | commit 49d04a56c68c4e11cfed9e1187154b03392b03ad
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Wed Aug 31 14:20:01 2011 +0200
|   
|       rename r -> r_static etc
|   
|   M	Makefile
|   M	src/Makefile.template
|   D	testsuite/matlab
|   A	testsuite/matlab_static
|   D	testsuite/octave
|   A	testsuite/octave_static
|   D	testsuite/python/classifier.py
|   D	testsuite/python/clustering.py
|   D	testsuite/python/distance.py
|   D	testsuite/python/distribution.py
|   D	testsuite/python/kernel.py
|   D	testsuite/python/preproc.py
|   D	testsuite/python/regression.py
|   D	testsuite/python/test_all.sh
|   D	testsuite/python/test_one.py
|   D	testsuite/python/test_svm_kernel_multiple.py
|   D	testsuite/python/util.py
|   A	testsuite/python_static/classifier.py
|   A	testsuite/python_static/clustering.py
|   A	testsuite/python_static/distance.py
|   A	testsuite/python_static/distribution.py
|   A	testsuite/python_static/kernel.py
|   A	testsuite/python_static/preproc.py
|   A	testsuite/python_static/regression.py
|   A	testsuite/python_static/test_all.sh
|   A	testsuite/python_static/test_one.py
|   A	testsuite/python_static/test_svm_kernel_multiple.py
|   A	testsuite/python_static/util.py
|   D	testsuite/r/classifier.R
|   D	testsuite/r/clustering.R
|   D	testsuite/r/distance.R
|   D	testsuite/r/distribution.R
|   D	testsuite/r/kernel.R
|   D	testsuite/r/preproc.R
|   D	testsuite/r/regression.R
|   D	testsuite/r/test_all.sh
|   D	testsuite/r/test_one.R
|   D	testsuite/r/test_one.sh
|   D	testsuite/r/util/check_accuracy.R
|   D	testsuite/r/util/convert_features_and_add_preproc.R
|   D	testsuite/r/util/fix_classifier_name_inconsistency.R
|   D	testsuite/r/util/fix_clustering_name_inconsistency.R
|   D	testsuite/r/util/fix_distance_name_inconsistency.R
|   D	testsuite/r/util/fix_kernel_name_inconsistency.R
|   D	testsuite/r/util/fix_normalizer_name_inconsistency.R
|   D	testsuite/r/util/fix_preproc_name_inconsistency.R
|   D	testsuite/r/util/fix_regression_name_inconsistency.R
|   D	testsuite/r/util/read_mfile.R
|   D	testsuite/r/util/set_distance.R
|   D	testsuite/r/util/set_features.R
|   D	testsuite/r/util/set_kernel.R
|   D	testsuite/r/util/tobool.R
|   A	testsuite/r_static/classifier.R
|   A	testsuite/r_static/clustering.R
|   A	testsuite/r_static/distance.R
|   A	testsuite/r_static/distribution.R
|   A	testsuite/r_static/kernel.R
|   A	testsuite/r_static/preproc.R
|   A	testsuite/r_static/regression.R
|   A	testsuite/r_static/test_all.sh
|   A	testsuite/r_static/test_one.R
|   A	testsuite/r_static/test_one.sh
|   A	testsuite/r_static/util/check_accuracy.R
|   A	testsuite/r_static/util/convert_features_and_add_preproc.R
|   A	testsuite/r_static/util/fix_classifier_name_inconsistency.R
|   A	testsuite/r_static/util/fix_clustering_name_inconsistency.R
|   A	testsuite/r_static/util/fix_distance_name_inconsistency.R
|   A	testsuite/r_static/util/fix_kernel_name_inconsistency.R
|   A	testsuite/r_static/util/fix_normalizer_name_inconsistency.R
|   A	testsuite/r_static/util/fix_preproc_name_inconsistency.R
|   A	testsuite/r_static/util/fix_regression_name_inconsistency.R
|   A	testsuite/r_static/util/read_mfile.R
|   A	testsuite/r_static/util/set_distance.R
|   A	testsuite/r_static/util/set_features.R
|   A	testsuite/r_static/util/set_kernel.R
|   A	testsuite/r_static/util/tobool.R
|  
* commit ceee77a89029284bd9ca83f121c004ef23da3d25
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 14:34:11 2011 +0400
| 
|     Doc improvements
| 
| M	src/shogun/base/Parameter.h
| M	src/shogun/base/class_list.cpp.templ
| M	src/shogun/classifier/svm/CPLEXSVM.h
| M	src/shogun/classifier/svm/LaRank.h
| M	src/shogun/distributions/PositionalPWM.h
| M	src/shogun/features/CombinedDotFeatures.h
| M	src/shogun/features/ExplicitSpecFeatures.h
| M	src/shogun/features/HashedWDFeatures.h
| M	src/shogun/features/HashedWDFeaturesTransposed.h
| M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| M	src/shogun/features/PolyFeatures.h
| M	src/shogun/features/SimpleFeatures.h
| M	src/shogun/features/SparseFeatures.h
| M	src/shogun/features/SparsePolyFeatures.h
| M	src/shogun/features/WDFeatures.h
| M	src/shogun/io/SerializableAsciiFile.h
| M	src/shogun/io/SerializableAsciiReader00.h
| M	src/shogun/io/SerializableFile.h
| M	src/shogun/kernel/ANOVAKernel.h
| M	src/shogun/kernel/BesselKernel.h
| M	src/shogun/kernel/Kernel.h
| M	src/shogun/kernel/ScatterKernelNormalizer.h
| M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/shogun/kernel/SpectrumRBFKernel.h
| M	src/shogun/kernel/WaveletKernel.h
| M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| M	src/shogun/lib/Compressor.h
| M	src/shogun/lib/DataType.h
| M	src/shogun/lib/HashSet.h
| M	src/shogun/structure/DynProg.h
| M	src/shogun/ui/GUIClassifier.h
| M	src/shogun/ui/GUIDistance.h
| M	src/shogun/ui/GUIFeatures.h
| M	src/shogun/ui/GUIHMM.h
| M	src/shogun/ui/GUIKernel.h
| M	src/shogun/ui/GUILabels.h
| M	src/shogun/ui/GUIMath.h
| M	src/shogun/ui/GUIPluginEstimate.h
| M	src/shogun/ui/GUIPreprocessor.h
| M	src/shogun/ui/GUIStructure.h
| M	src/shogun/ui/GUITime.h
| M	src/shogun/ui/SGInterface.h
| M	src/shogun/ui/SyntaxHighLight.h
|  
* commit b23e6ba0638bea171c9bee88042ec48ef20be784
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 11:30:38 2011 +0200
| 
|     require new test data
| 
| M	data
|  
* commit 52fb28d425f5ae6ebb4d4357a2c69dea945b5ccb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 11:24:58 2011 +0200
| 
|     fixed a number of .rb scripts and removed broken non-trivial to fix ones
| 
| M	data
| D	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| M	examples/undocumented/ruby_modular/load.rb
| M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
| D	src/interfaces/ruby_modular/modshogun.rb
|  
* commit e3c14a41d3cbc180b55c368e89539376ed1e291b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:49:17 2011 +0200
| 
|     require new test data
| 
| M	data
|  
* commit 3deadd256739833965ba4eb1bed16ad4307521d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:46:19 2011 +0200
| 
|     all generated tests work upon generator.py/tester.py now
| 
| M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| M	examples/undocumented/python_modular/streaming_vw_modular.py
| M	src/shogun/kernel/SplineKernel.cpp
| M	src/shogun/kernel/SplineKernel.h
|  
* commit b17aeae601a26bcdd5f0461f07a688b24a2aa396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 10:06:51 2011 +0200
| 
|     fix remaining examples
| 
| M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| M	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| M	src/shogun/classifier/vw/VowpalWabbit.cpp
|  
* commit ffb7c5454ddb8e98e27bf1481773a91d93ac444d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 01:50:55 2011 +0200
| 
|     fix examples
| 
| M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| M	examples/undocumented/python_modular/streaming_vw_modular.py
|  
* commit 9305ba3cdc32e6ff76ad9e2ea9e1c45a0add6110
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 03:48:34 2011 +0400
| 
|     Removed output from python modular examples
| 
| M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| M	examples/undocumented/python_modular/kernel_anova_modular.py
| M	examples/undocumented/python_modular/library_fisher2x3_modular.py
|  
* commit aff7c0d2a255fb5fdbd57e690fc20c64819dcbb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 31 01:21:09 2011 +0200
| 
|     remove o umlaut
| 
| M	src/shogun/preprocessor/KernelPCA.h
|  
* commit af951c1ed512fea97a06d62474d2f661464d5eb7
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 01:27:21 2011 +0400
| 
|     Added modelselection examples' description
| 
| A	examples/descriptions/modular/modelselection_grid_search_linear.txt
| A	examples/descriptions/modular/modelselection_parameter_tree.txt
|  
* commit 21b24b384daf15a45b1976a39b7a9f3de18ea147
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Wed Aug 31 01:00:16 2011 +0400
| 
|     Fixed segmentation fault error emerged with DistanceMachine serialization
| 
| M	src/shogun/machine/DistanceMachine.cpp
|  
* commit 9580eb84cff8f1b3d9eff2cd80d9ab0796e5058e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Tue Aug 30 23:54:57 2011 +0400
| 
|     Restore wrong modified python modular examples
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
|  
* commit 03ee3f898edb46fe63ce2e78c44bc3b548d06ec0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 20:57:58 2011 +0200
| 
|     mention apply() instead of classify() in tutorial and README
| 
| M	doc/pages/ModularTutorial.mainpage
| M	src/README.developer
|    
*   commit c52988db9b364c990338fcd0cf81fa03dbc74d72
|\  Merge: faf1d9c a42f60d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 30 11:28:51 2011 -0700
| | 
| |     Merge pull request #320 from serialhex/master
| |     
| |     Many more ruby examples
| |   
| * commit a42f60d3dcc679ef77bd7a2b47e29996edfacf29
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 21:52:12 2011 -0400
| | 
| |     commenting out pry from modshogun.rb
| | 
| | M	src/interfaces/ruby_modular/modshogun.rb
| |   
| * commit 8ae0fc8b3970cef24e3ed42e168b7d8419fd5824
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 21:41:09 2011 -0400
| | 
| |     yes, more examples... i'm just an examplin kind of guy...
| | 
| | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | A	examples/undocumented/ruby_modular/regression_krr_modular.rb
| |   
| * commit 7b44f43f6d6c94dd0aff109f63c828c1090d105f
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Mon Aug 29 00:04:33 2011 -0400
| | 
| |     one last example
| | 
| | A	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| |   
| * commit 7cdb14c8a59796baf69282d05fb77622d04aa103
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sun Aug 28 22:45:18 2011 -0400
| | 
| |     adding more files
| | 
| | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | A	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | A	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | A	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| |   
| * commit 8eab810645a88f1100a667be29c5bb1a1723e592
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sun Aug 28 20:46:34 2011 -0400
| | 
| |     fixing up some of the examples, having problems with distribution_histogram_modular.rb
| | 
| | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | A	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | A	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | A	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | A	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | M	src/interfaces/ruby_modular/modshogun.rb
| |   
| * commit 0788c0ae100430fc0559c8183578503adff67586
|/  Author: Justin Patera <serialhex@gmail.com>
|   Date:   Sun Aug 21 21:39:09 2011 -0400
|   
|       removed the fun proggies i used to help convert the python examples to ruby
|   
|   D	examples/undocumented/ruby_modular/fixer_proggie
|  
* commit faf1d9c043fa8795a3809aa4e038d60c7bdf0e18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 18:04:37 2011 +0200
| 
|     add makefile for vw
| 
| A	applications/vw/Makefile
|  
* commit 5a85eb531b87f545f65842287b3662d79c980cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:56:45 2011 +0200
| 
|     fix sailfish application
| 
| M	applications/sailfish/Makefile
| M	applications/sailfish/sailfish.cpp
|  
* commit f0b3121f0a35f5f30b6ae7f7140df9701409cdab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:45:25 2011 +0200
| 
|     fix ocr example and data for new shogun
| 
| M	applications/ocr/Ai.py
| M	applications/ocr/data/ocr.svm.gz
|  
* commit 312e97b4b59f22eedb88bb5b4b5ab48a1271ec31
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:44:25 2011 +0200
| 
|     Fix a bug in kernel machine introduced in SGVector transition
|     
|     m_alpha has its own length and should be set and used independently from
|     m_svs otherwise serialization fails
| 
| M	src/shogun/machine/KernelMachine.h
|  
* commit 4ecaa34b98e23ef0b9c0e239b85bfb12470df1bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 17:43:38 2011 +0200
| 
|     remove obsolete multiboost
| 
| D	applications/multiboost/Makefile
| D	applications/multiboost/multiboost.cpp
|  
* commit 6f9f13976ed0178823f3d91283f2257e76a9c17f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 09:25:23 2011 +0200
| 
|     improve error output in binary file
| 
| M	src/shogun/io/BinaryFile.cpp
|  
* commit dc68e4f2dbd1405e21435ad730b9b667c315c198
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 30 09:24:57 2011 +0200
| 
|     fix two more 'problematic' ruby examples
| 
| A	examples/undocumented/ruby_modular/features_io_modular.rb
| A	examples/undocumented/ruby_modular/kernel_auc_modular.rb
|  
* commit a4d19caa3230bfeb3ec3ee93875dcdef3eac9204
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 23:46:19 2011 +0400
| 
|     Added few examples descriptions
| 
| A	examples/descriptions/modular/distance_normsquared.txt
| A	examples/descriptions/modular/distance_sparseeuclidean.txt
| A	examples/descriptions/modular/distribution_ppwm.txt
| M	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| A	examples/descriptions/modular/serialization_complex_example.txt
| A	examples/descriptions/modular/serialization_matrix.txt
|  
* commit fc63be5f32b4dcc8179d24bd18b023d7242ad9e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 18:00:08 2011 +0200
| 
|     mention daniel in contributions
| 
| M	src/CONTRIBUTIONS
|  
* commit ace079df6a31a8e87cddb2ef186aa0144c45f762
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 17:49:13 2011 +0200
| 
|     add further c# examples
| 
| A	examples/undocumented/csharp_modular/distance_euclidian_modular.cs
| A	examples/undocumented/csharp_modular/distance_manhattenword_modular.cs
| A	examples/undocumented/csharp_modular/distribution_linearhmm_modular.cs
| A	examples/undocumented/csharp_modular/kernel_anova_modular.cs
| A	examples/undocumented/csharp_modular/kernel_cauchy_modular.cs
| A	examples/undocumented/csharp_modular/kernel_chi2_modular.cs
| A	examples/undocumented/csharp_modular/kernel_circular_modular.cs
| A	examples/undocumented/csharp_modular/kernel_const_modular.cs
| A	examples/undocumented/csharp_modular/kernel_diag_modular.cs
| A	examples/undocumented/csharp_modular/kernel_distance_modular.cs
| A	examples/undocumented/csharp_modular/kernel_inversemultiquadric_modular.cs
| A	examples/undocumented/csharp_modular/kernel_io_modular.cs
| A	examples/undocumented/csharp_modular/kernel_linear_modular.cs
| A	examples/undocumented/csharp_modular/kernel_log_modular.cs
| A	examples/undocumented/csharp_modular/kernel_poly_modular.cs
| A	examples/undocumented/csharp_modular/kernel_rationalquadratic_modular.cs
| A	examples/undocumented/csharp_modular/kernel_salzberg_word_string_modular.cs
| A	examples/undocumented/csharp_modular/kernel_sigmoid_modular.cs
| A	examples/undocumented/csharp_modular/kernel_spherical_modular.cs
| A	examples/undocumented/csharp_modular/kernel_spline_modular.cs
| A	examples/undocumented/csharp_modular/kernel_tstudent_modular.cs
| A	examples/undocumented/csharp_modular/kernel_wave_modular.cs
| A	examples/undocumented/csharp_modular/kernel_wavelet_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_locallylinearembedding_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_multidimensionalscaling_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_normone_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_prubevarsubmean_modular.cs
| A	examples/undocumented/csharp_modular/preprocessor_randomfouriergausspreproc_modular.cs
|  
* commit 50aac3eb2dd5adaeee591d74c15a640248122742
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 29 06:02:21 2011 +0200
| 
|     don't use len+1 for the string but len
| 
| M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit fb4ddae8cdfc1b0fb59338302e5378985d80fd2d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:58:35 2011 +0400
| 
|     Kernel examples doc
| 
| M	examples/descriptions/modular/classifier_averaged_perceptron.txt
| M	examples/descriptions/modular/classifier_gaussiannaivebayes.txt
| A	examples/descriptions/modular/kernel_anova.txt
| A	examples/descriptions/modular/kernel_cauchy.txt
| A	examples/descriptions/modular/kernel_circular.txt
| A	examples/descriptions/modular/kernel_combined_custom_poly.txt
| A	examples/descriptions/modular/kernel_distantsegments.txt
| A	examples/descriptions/modular/kernel_exponential.txt
| A	examples/descriptions/modular/kernel_inversemultiquadric.txt
| A	examples/descriptions/modular/kernel_log.txt
| A	examples/descriptions/modular/kernel_match_word_string.txt
| A	examples/descriptions/modular/kernel_multiquadric.txt
| A	examples/descriptions/modular/kernel_poly_match_string.txt
| A	examples/descriptions/modular/kernel_power.txt
| A	examples/descriptions/modular/kernel_rationalquadratic.txt
| A	examples/descriptions/modular/kernel_spherical.txt
| A	examples/descriptions/modular/kernel_spline.txt
| A	examples/descriptions/modular/kernel_tstudent.txt
| A	examples/descriptions/modular/kernel_wave.txt
| A	examples/descriptions/modular/kernel_wavelet.txt
|  
* commit 28ce82a1deada606807ad2342ab1d9b36f87797b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:36:58 2011 +0400
| 
|     More doc for examples
| 
| A	examples/descriptions/modular/classifier_gaussiannaivebayes.txt
| A	examples/descriptions/modular/evaluation_contingencytableevaluation.txt
| A	examples/descriptions/modular/evaluation_meansquarederror.txt
| A	examples/descriptions/modular/evaluation_multiclassaccuracy.txt
| A	examples/descriptions/modular/evaluation_prcevaluation.txt
| A	examples/descriptions/modular/evaluation_rocevaluation.txt
|  
* commit 2b3ca25d1e693fe493df25f01f4120717cb65d9d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 02:24:17 2011 +0400
| 
|     Remove Matrix/VectorTest from java modular examples
| 
| D	examples/undocumented/java_modular/MatrixTest.java
| D	examples/undocumented/java_modular/VectorTest.java
|  
* commit 68985779f02d9d2d7593d797c1bbd40be12676bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 23:52:15 2011 +0200
| 
|     Documentation / Release adjustments for shogun 1.0.0
|     
|     - add put-online target to makefile
|     - fix install documentation
|     - include new lua/java/ruby/csharp examples in doc
|     - rename dirs and symlinks to x -> x_static
| 
| M	doc/Doxyfile
| M	doc/Doxyfile_cn
| M	doc/Makefile
| M	doc/insert_examples.py
| M	doc/insert_examples_cn.py
| M	doc/pages/Examples.mainpage
| M	doc/pages/ExamplesLibshogun.mainpage
| A	doc/pages/ExamplesModularCSharp.mainpage
| A	doc/pages/ExamplesModularJava.mainpage
| A	doc/pages/ExamplesModularLua.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| A	doc/pages/ExamplesModularRuby.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	examples/Makefile
| D	examples/documented/matlab
| A	examples/documented/matlab_static
| D	examples/documented/octave
| A	examples/documented/octave_static
| M	examples/generate_documented.sh
|  
* commit 76ed3570c57089757ba81145fdb02cba4cdcfe0e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:46:33 2011 +0400
| 
|     Preproc -> preprocessor naming transition for modular examples
| 
| D	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| D	examples/undocumented/octave_modular/preproc_normone_modular.m
| D	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| A	examples/undocumented/octave_modular/preprocessor_logplusone_modular.m
| A	examples/undocumented/octave_modular/preprocessor_normone_modular.m
| A	examples/undocumented/octave_modular/preprocessor_prunevarsubmean_modular.m
| D	examples/undocumented/r_modular/preproc_logplusone_modular.R
| D	examples/undocumented/r_modular/preproc_normone_modular.R
| D	examples/undocumented/r_modular/preproc_prunevarsubmean_modular.R
| A	examples/undocumented/r_modular/preprocessor_logplusone_modular.R
| A	examples/undocumented/r_modular/preprocessor_normone_modular.R
| A	examples/undocumented/r_modular/preprocessor_prunevarsubmean_modular.R
|  
* commit a1263800324e8987945ab4c13aaf9c0d46cc776e
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:30:53 2011 +0400
| 
|     Renamed wrong called laplacian eigenmaps example description
| 
| D	examples/descriptions/modular/preprocessor_laplacianeigemaps.txt
| A	examples/descriptions/modular/preprocessor_laplacianeigenmaps.txt
|  
* commit 4887ddc5c73970ed15192b97629cc152557e3a4f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:27:50 2011 +0400
| 
|     Added reference for kPCA
| 
| M	src/shogun/preprocessor/KernelPCA.h
|  
* commit f949f36c8d298375a41ed13b2419994510f03824
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Mon Aug 29 01:27:04 2011 +0400
| 
|     Example doc updates
| 
| A	examples/descriptions/modular/classifier_averaged_perceptron.txt
| D	examples/descriptions/modular/preproc_logplusone.txt
| D	examples/descriptions/modular/preproc_normone.txt
| D	examples/descriptions/modular/preproc_prunevarsubmean.txt
| D	examples/descriptions/modular/preproc_sortulongstring.txt
| D	examples/descriptions/modular/preproc_sortwordstring.txt
| A	examples/descriptions/modular/preprocessor_hessianlocallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_isomap.txt
| A	examples/descriptions/modular/preprocessor_kernellocallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_kernelpca.txt
| A	examples/descriptions/modular/preprocessor_laplacianeigemaps.txt
| A	examples/descriptions/modular/preprocessor_locallylinearembedding.txt
| A	examples/descriptions/modular/preprocessor_localtangentspacealignment.txt
| A	examples/descriptions/modular/preprocessor_logplusone.txt
| A	examples/descriptions/modular/preprocessor_multidimensionalscaling.txt
| A	examples/descriptions/modular/preprocessor_normone.txt
| A	examples/descriptions/modular/preprocessor_pca.txt
| A	examples/descriptions/modular/preprocessor_prunevarsubmean.txt
| A	examples/descriptions/modular/preprocessor_randomfouriergausspreproc.txt
| A	examples/descriptions/modular/preprocessor_sortulongstring.txt
| A	examples/descriptions/modular/preprocessor_sortwordstring.txt
|  
* commit b2d77a9bd46ab4a0c5b02f64652bc8a08147286d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 22:07:20 2011 +0200
| 
|     remove example
| 
| D	examples/kernel_distance.py
|  
* commit eb4008813c6dd1e47fc2ca62d59c6c96131c2d80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 22:07:09 2011 +0200
| 
|     some progress on make release magic
| 
| M	Makefile
|  
* commit da0f5b452c1d48c4c0d601d57440c54e08cc787b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:59:12 2011 +0200
| 
|     generate changelog based on git history
| 
| M	src/Makefile
|  
* commit 95f5e1ea7479a3386cd4774a9590f5a70bd1e30f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:58:25 2011 +0200
| 
|     enable csharp autodetection in configure
| 
| M	src/configure
|  
* commit 931e9139c51d0228f00319ddce0b7489cd2e45b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 21:58:00 2011 +0200
| 
|     generate changelog based on git history
| 
| M	src/ChangeLog
|    
*   commit 2f0a2c86e4af6ea4aca223ebbe40e4d4023fdd8a
|\  Merge: 973318c 1b08079
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 28 11:21:48 2011 -0700
| | 
| |     Merge pull request #319 from frx/streaming_vw
| |     
| |     Made VW output more exact.
| |   
| * commit 1b08079b456cd6a782e46b237bf04f4daf919850
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 17:37:20 2011 +0530
| | 
| |     Made VW output more exact.
| | 
| | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | M	src/shogun/classifier/vw/VowpalWabbit.h
| |   
* | commit 973318c9d39cc476b8eccd20d6e21199d2a2527d
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sun Aug 28 19:51:14 2011 +0200
|   
|       Fix tests for java and c#
|       
|       - remove duplicate geodesic example in c#
|       - fix java's check.sh to exclude Load.java
|   
|   D	examples/undocumented/csharp_modular/distance_geodesic_modular (1).cs
|   M	examples/undocumented/java_modular/check.sh
|  
* commit 60ad972b9d477fa380cd3547f85285a12f7bfac7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 12:18:24 2011 +0200
| 
|     assert that m_pwm is set
| 
| M	src/shogun/distributions/PositionalPWM.cpp
|  
* commit a74aaf03eb8a71190c1975501a7b8f91d949dc8a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 12:09:51 2011 +0200
| 
|     fix ppwm example and add option to check to run just a few examples
| 
| M	examples/undocumented/java_modular/check.sh
| M	examples/undocumented/java_modular/distribution_ppwm_modular.java
|    
*   commit 0deb8cabaa0f9fcbb2904e35ae52bb84bdfe7019
|\  Merge: 04d6769 5219f4d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 28 01:49:39 2011 -0700
| | 
| |     Merge pull request #318 from frx/streaming_vw
| |     
| |     Better documentation and some issues resolved in StreamingSparseFeatures
| |   
| * commit 5219f4df1516a784f78f14445f3f5e9c61e6d8c6
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 12:03:43 2011 +0530
| | 
| |     Reverted unwanted commit in data.
| | 
| | M	data
| |   
| * commit 44936ba0993d631f463825febcd71e4e7e269afd
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sun Aug 28 11:41:20 2011 +0530
| | 
| |     Better doc for StreamingSparseFeatures.
| | 
| | M	src/shogun/features/StreamingSparseFeatures.h
| |   
| * commit 620710cd75d57a17b57d099ade3519fb17af306c
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Sun Aug 28 09:00:06 2011 +0530
|   
|       expand_if_required now more accurate and sort_features modified for correct memory freeing in StreamingSparseFeatures.
|   
|   M	data
|   M	src/shogun/features/StreamingSparseFeatures.h
|  
* commit 04d6769fb9473600879877f4efc9b7b5a78f38ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:44:10 2011 +0200
| 
|     add Daniels first batch of .cs examples
| 
| A	examples/undocumented/csharp_modular/distance_canberra_modular.cs
| A	examples/undocumented/csharp_modular/distance_chebyshew_modular.cs
| A	examples/undocumented/csharp_modular/distance_chisquare_modular.cs
| A	examples/undocumented/csharp_modular/distance_cosine_modular.cs
| A	examples/undocumented/csharp_modular/distance_geodesic_modular (1).cs
| A	examples/undocumented/csharp_modular/distance_geodesic_modular.cs
| A	examples/undocumented/csharp_modular/distance_jensen_modular.cs
| A	examples/undocumented/csharp_modular/distance_minkowski_modular.cs
| A	examples/undocumented/csharp_modular/distance_normsquared_modular.cs
| A	examples/undocumented/csharp_modular/distance_tanimoto_modular.cs
|  
* commit c5ea1a34bd18820944e851d4215930d306a1b526
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:33:20 2011 +0200
| 
|     remove tmp generated files from java examples
| 
| D	examples/undocumented/java_modular/blaah.asc
| D	examples/undocumented/java_modular/gaussian_train.ascii
| D	examples/undocumented/java_modular/tmp.dat
|  
* commit 5ab50a60ff58f6c9d85a31c02d9aeffd9eb64da2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 28 06:33:09 2011 +0200
| 
|     add . to ruby path
| 
| M	src/Makefile.template
|  
* commit 417d6c9d8df89ff94b945140f12bb4bae04c8166
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 03:19:01 2011 +0400
| 
|     #ifndef WIN32 to #ifdef HAVE_LAPACK transition
| 
| M	src/shogun/base/Parallel.h
| M	src/shogun/classifier/svm/SVM.cpp
| M	src/shogun/classifier/svm/SVMLight.cpp
| M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| M	src/shogun/clustering/Hierarchical.cpp
| M	src/shogun/clustering/KMeans.cpp
| M	src/shogun/features/DotFeatures.cpp
| M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| M	src/shogun/kernel/Kernel.cpp
| M	src/shogun/kernel/SpectrumRBFKernel.cpp
| M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/shogun/machine/DistanceMachine.cpp
| M	src/shogun/machine/KernelMachine.cpp
| M	src/shogun/regression/svr/SVRLight.cpp
|  
* commit 5599548bab313dce39e884bf7f578e7bedaa3fbe
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:55:24 2011 +0400
| 
|     Hopefully final fixes for java examples
| 
| M	examples/undocumented/java_modular/features_string_word_modular.java
| M	examples/undocumented/java_modular/kernel_combined_modular.java
| M	examples/undocumented/java_modular/kernel_exponential_modular.java
| M	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| M	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| M	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| M	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
|  
* commit 3dab24f0363b694a94059ec4f1182d5ab02f26b2
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:31:17 2011 +0400
| 
|     MKL java modular example fix
| 
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
|  
* commit a557c4bda44fc8299e9d7dfa6d15eeb8648e57fa
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sun Aug 28 01:21:04 2011 +0400
| 
|     More fixes for java modular examples
| 
| A	examples/undocumented/java_modular/blaah.asc
| A	examples/undocumented/java_modular/foo_uncompressed.str
| A	examples/undocumented/java_modular/gaussian_train.ascii
| M	examples/undocumented/java_modular/kernel_fisher_modular.java
| M	examples/undocumented/java_modular/kernel_top_modular.java
| M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| M	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| A	examples/undocumented/java_modular/tmp.dat
|  
* commit bd140da4a313bc807f10a055df64c1e9f472f315
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 19:58:21 2011 +0200
| 
|     add exception support in csharp (fixes warnings about missing excode in csout typemap)
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|    
*   commit 3c81fe487e86fc1da9b5ae3f46c0557a96bfcc4d
|\  Merge: a5ad47f 1acb396
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 27 03:41:47 2011 -0700
| | 
| |     Merge pull request #317 from frx/streaming_vw
| |     
| |     StreamingSparseFeatures improvements
| |   
| * commit 1acb396b635d77477cbf90915e867e67a24ca87a
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sat Aug 27 16:03:14 2011 +0530
| | 
| |     Added missing StreamingStringFeatures to modular.
| | 
| | M	src/interfaces/modular/Features.i
| | M	src/interfaces/modular/Features_includes.i
| |   
| * commit 5982e858a6f814cbdcfd8f425871add425626958
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Sat Aug 27 15:15:50 2011 +0530
| | 
| |     Improvements in StreamingSparseFeatures.
| | 
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StreamingStringFeatures.h
| |   
* | commit a5ad47f0e8845fe080b15d3f9738e7da47f9479b
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Aug 27 12:37:12 2011 +0200
|   
|       fix ruby scripts by adding shogun helpers to tests
|   
|   M	examples/undocumented/ruby_modular/check.sh
|   A	examples/undocumented/ruby_modular/shogun_helpers.rb
|  
* commit a0cc72669879733382c5fc9ca3670b024864f1e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 06:50:33 2011 +0200
| 
|     unpack parameter list
| 
| M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
|  
* commit 8afdbf1b83cbd043d9a07015f4f402d692b2df93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 27 06:43:47 2011 +0200
| 
|     temporarily removing non-working ruby examples
| 
| D	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| D	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| D	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| D	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| D	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| D	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| D	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| D	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| D	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| D	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| D	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| D	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| D	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| D	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| D	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| D	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| D	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| D	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| D	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| D	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| D	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| D	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| D	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| D	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| D	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| D	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| D	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| D	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| D	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| D	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| D	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| D	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| D	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| D	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| D	examples/undocumented/ruby_modular/features_io_modular.rb
| D	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_modular.rb
| D	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| D	examples/undocumented/ruby_modular/features_snp_modular.rb
| D	examples/undocumented/ruby_modular/features_sparse_modular.rb
| D	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| D	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| D	examples/undocumented/ruby_modular/features_string_file_modular.rb
| D	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| D	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| D	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| D	examples/undocumented/ruby_modular/features_string_word_modular.rb
| D	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| D	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| D	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| D	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| D	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| D	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| D	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_const_modular.rb
| D	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| D	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| D	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| D	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| D	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| D	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| D	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| D	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| D	examples/undocumented/ruby_modular/kernel_io_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| D	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_log_modular.rb
| D	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| D	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_power_modular.rb
| D	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| D	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| D	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| D	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| D	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| D	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| D	examples/undocumented/ruby_modular/kernel_top_modular.rb
| D	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| D	examples/undocumented/ruby_modular/kernel_wave_modular.rb
| D	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| D	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| D	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| D	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| D	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| D	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| D	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| D	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| D	examples/undocumented/ruby_modular/regression_krr_modular.rb
| D	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| D	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| D	examples/undocumented/ruby_modular/serialization_complex_example.rb
| D	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| D	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| D	examples/undocumented/ruby_modular/shogun_helpers.rb
| D	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| D	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| D	examples/undocumented/ruby_modular/trancekoder.rb
|  
* commit 1b6690523464883b2413310776925b76ab995fc9
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 05:54:07 2011 +0400
| 
|     Changed matrix to make DSYGVX work right in mathematics_lapack, added mathematics_lapack
| 
| M	examples/undocumented/libshogun/Makefile
| M	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit c7b59c1c7e23db3ca8ec915830ad4d0e1415532f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 03:37:55 2011 +0400
| 
|     Added libshogun LAPACK test
| 
| A	examples/undocumented/libshogun/mathematics_lapack.cpp
|  
* commit ddb13ac40698c72c5f25719ef7398dec2cdb3901
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 03:10:06 2011 +0400
| 
|     Updated gitignore
| 
| M	.gitignore
|    
*   commit 9467e97aaf8a59faaab0d4e937969b42b038fb75
|\  Merge: 23456e6 c23c455
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 27 03:08:21 2011 +0400
| | 
| |     Merge branch 'gmm' of git://github.com/alesis/shogun
| |   
| * commit c23c4559ca963b77d2ecac498f0cc94668b7798e
| | Author: Alesis Novik <alesisnov@gmail.com>
| | Date:   Fri Aug 26 23:26:28 2011 +0100
| | 
| |     Updated GMM documentation
| | 
| | M	src/shogun/clustering/GMM.h
| |   
* | commit 23456e686a9d80e61fa0c89e41c46d862005ffea
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 27 03:05:21 2011 +0400
| | 
| |     Fixes for java examples
| | 
| | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | M	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | M	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | M	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | M	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | M	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | M	examples/undocumented/java_modular/features_snp_modular.java
| | M	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | M	examples/undocumented/java_modular/features_string_char_modular.java
| | M	examples/undocumented/java_modular/features_string_file_char_modular.java
| | M	examples/undocumented/java_modular/features_string_file_modular.java
| | M	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | M	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | M	examples/undocumented/java_modular/features_string_ulong_modular.java
| | M	examples/undocumented/java_modular/features_string_word_modular.java
| | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | M	examples/undocumented/java_modular/kernel_top_modular.java
| | D	examples/undocumented/java_modular/preprocessor_pcacut_modular.java
| |   
* | commit af53b6fdd306b57eae683c4ffa65b67ea839efa4
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Sat Aug 27 03:04:26 2011 +0400
|   
|       Fixes for lapack wrappers
|   
|   M	src/shogun/mathematics/lapack.cpp
|  
* commit cc0f88874ffe1bf147fe08637d7d16b78378b711
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 01:33:43 2011 +0400
| 
|     Hack made hemisphere and swissroll work both in matplotlib 0.99 and >1.0
| 
| M	examples/undocumented/python_modular/graphical/hemisphere.py
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit 139c42aa48e8bab1da2f54f41576983df83dec98
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 00:36:51 2011 +0400
| 
|     Attempt to fix DSYGVX
| 
| M	src/shogun/mathematics/lapack.cpp
|  
* commit f1cc27a3f40708e4b8e74533e9512c4b4d9bcda0
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Aug 27 00:04:43 2011 +0400
| 
|     Data update
| 
| M	data
|  
* commit 0fcedaa4fcfc20bf773c507c252989616d1952e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 22:01:56 2011 +0200
| 
|     remove all_evaluation
| 
| D	examples/undocumented/python_modular/graphical/all_evaluation.py
|  
* commit 301e5f5468e928d62999c6e9277b83d0518987ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:35:51 2011 +0200
| 
|     also ifdef HAVE_LAPACK liblinear based examples
| 
| M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| M	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
|  
* commit c5e08d9c65218d49d879ad41ff616155d6265a6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:32:44 2011 +0200
| 
|     ifdef HAVE_ARPACK example to not fail on buildbot test
| 
| M	examples/undocumented/libshogun/mathematics_arpack.cpp
|  
* commit d8986e9db1b1df444e83c1a05c385c937af2f135
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 21:27:49 2011 +0200
| 
|     use int64 to represent c#/c ptr
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|  
* commit a920d11eb73cacf452d890d4f2474c6bfb9504b1
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Aug 26 20:57:43 2011 +0400
| 
|     More informative error checking in laplacian eigenmaps
| 
| M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
|  
* commit aa9557397b0e5a80737a9d67cc20b3cb451925e3
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Aug 26 20:57:17 2011 +0400
| 
|     Remove asserts from DSYGVX
| 
| M	src/shogun/mathematics/lapack.cpp
|  
* commit 148b751772a308a5b338dbe7315f330c70f80955
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 26 17:46:14 2011 +0200
| 
|     fix int_32_t typo
| 
| M	src/interfaces/csharp_modular/swig_typemaps.i
|    
*   commit 3afc64d442334f234495312769416b9f660cb4c9
|\  Merge: fcf7316 3dbfc26
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:40:54 2011 -0700
| | 
| |     Merge pull request #315 from frx/streaming_vw
| |     
| |     Added vw_constants.h to repository.
| |   
| * commit 3dbfc26bfeb29433b7e6795c254ff2cc99387e60
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Fri Aug 26 21:08:08 2011 +0530
|   
|       Added vw_constants.h to repository.
|   
|   A	src/shogun/classifier/vw/vw_constants.h
|    
*   commit fcf73169ab1f879842af6fac9db8f8fb5f916525
|\  Merge: 653e96c eb8b842
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:20:16 2011 -0700
| | 
| |     Merge pull request #314 from sploving/master
| |     
| |     fix rows and cols bug
| |   
| * commit eb8b842f3f8523817438089e2374ab42e0c5ad44
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Fri Aug 26 23:06:36 2011 +0800
| | 
| |     fix rows and cols type bug
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| |     
* |   commit 653e96ccec7c40e71e6d178dfcb3e66e96c25d0c
|\ \  Merge: 2226301 54bc14c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 26 07:45:36 2011 -0700
| | | 
| | |     Merge pull request #313 from frx/streaming_vw
| | |     
| | |     Conversion of vw's size_t to typedef'd uint32_t
| | |    
| * | commit 54bc14c83801554f746dd83bc6c5214e711db36b
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Aug 26 20:10:28 2011 +0530
| |   
| |       Conversion of vw's size_t to typedef'd uint32_t
| |   
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwParser.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| |   M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| |   M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| |   M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| |   M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.h
| |   M	src/shogun/classifier/vw/vw_common.h
| |   M	src/shogun/classifier/vw/vw_example.cpp
| |   M	src/shogun/classifier/vw/vw_example.h
| |   M	src/shogun/classifier/vw/vw_math.cpp
| |   M	src/shogun/classifier/vw/vw_math.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   M	src/shogun/features/StreamingVwFeatures.h
| |     
* |   commit 2226301d1ff0359cbb26c1fb075690003dd39f5b
|\ \  Merge: 911732f 1c36dfa
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Fri Aug 26 06:11:04 2011 -0700
| |   
| |       Merge pull request #312 from sploving/master
| |       
| |       fix stringlist bug
| |   
| * commit 1c36dfa09e4fa28d6e08c1a2d9648ea41b766ce0
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Fri Aug 26 21:08:51 2011 +0800
| | 
| |     fix stringlist bug
| | 
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| |   
* | commit 911732fa0e26f9ee234f19dec53f4e9890d22398
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:42:52 2011 +0400
| | 
| |     Fixes for java typemaps
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 9c4972b0a4e785e3c4821aa65fdf69bddcbd45bc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:22:16 2011 +0400
| | 
| |     Some java examples fixes
| | 
| | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | M	examples/undocumented/java_modular/distribution_histogram_modular.java
| | M	examples/undocumented/java_modular/features_simple_modular.java
| |   
* | commit 63b5aec58bf1f8b1cb6d13cfd3db975596133d1e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:21:30 2011 +0400
| | 
| |     Changed memory allocation method in java typemaps
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 5630a1dc81a62cfcedb9494353075e56f57e81e0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:20:56 2011 +0400
| | 
| |     Removed unnecessary double definitions of methods at string kernels
| | 
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| |   
* | commit 02feda6688c361e9df2f5bf661f9756cf630c743
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 16:20:19 2011 +0400
| | 
| |     Fixes for Histogram
| | 
| | M	src/shogun/distributions/Histogram.cpp
| |     
* |   commit 58b557f9b9b8797a7662c5b368b460441dc15a1b
|\ \  Merge: 4a4d755 1d81f89
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 26 04:40:09 2011 -0700
| | | 
| | |     Merge pull request #311 from frx/streaming_vw
| | |     
| | |     StreamingStringFeatures improvements
| | |    
| * | commit 1d81f8948eebe9781c996f29c15c53e0bde14c96
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 17:07:41 2011 +0530
| | | 
| | |     Removed pointer checking before SG_UNREF in StreamingStringFeatures.
| | | 
| | | M	src/shogun/features/StreamingStringFeatures.h
| | |    
| * | commit a6bf023b79a68115f03e84db88ea592a86a18918
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 16:50:19 2011 +0530
| | | 
| | |     Commented StreamingStringFeatures example better.
| | | 
| | | M	examples/undocumented/libshogun/streaming_stringfeatures.cpp
| | |    
| * | commit 65a020c9f4bd262f90c400ac3d1031716d97f7a0
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Aug 26 16:47:15 2011 +0530
| | | 
| | |     StreamingStringFeatures libshogun example.
| | | 
| | | A	examples/undocumented/libshogun/streaming_stringfeatures.cpp
| | |    
| * | commit 66c4ffd638d00d31cdeff766df5019b5c6da0bad
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Aug 26 16:12:55 2011 +0530
| |   
| |       Improvements in StreamingStringFeatures and reindentation of ParseBuffer.
| |   
| |   M	src/shogun/features/StreamingStringFeatures.h
| |   M	src/shogun/io/ParseBuffer.h
| |   M	src/shogun/io/StreamingFile.cpp
| |   
* | commit 4a4d7550af550c63883524428fd10aeb82337b1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 12:35:55 2011 +0200
| | 
| |     turn on ignores again as the culprit was broken java detection in configure
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit cfbef756f770ad34f53497722e52e90d5fbb8c03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 11:45:06 2011 +0200
| | 
| |     fix make doc
| | 
| | M	doc/Makefile
| |   
* | commit 3997e8da94e95c8fce6eb14de50c0eb48a326e0d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 10:45:36 2011 +0200
| | 
| |     add check examples targets
| | 
| | M	src/Makefile.template
| |   
* | commit ef7f6a37d0748d7f59a907a2a6801154ed6af973
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 10:44:52 2011 +0200
| | 
| |     make configure fail when java is enabled but java/javac/ant are not
| |     detected
| | 
| | M	src/configure
| |   
* | commit 14bccf1a0a4ab124021ca672ed6ac215434c0791
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 09:30:17 2011 +0200
| | 
| |     improve check.sh to take arguments with scripts to be tested
| | 
| | M	examples/undocumented/csharp_modular/check.sh
| |   
* | commit b17f07eec8063c851ebe0df570bbdced8a36161c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 09:29:56 2011 +0200
| | 
| |     temporarily disable all ignores of operators
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 443fa3e0249a91a6c706f0a010f7aecfca48d039
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 08:58:43 2011 +0200
| | 
| |     comment the == ignore line as java_modular chokes on it
| | 
| | M	src/configure
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 759fabb9c79f1c095f2731681f854358d1ce6772
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 06:42:53 2011 +0200
| | 
| |     add make check-examples-ruby_modular target
| | 
| | M	examples/undocumented/ruby_modular/check.sh
| | M	src/Makefile.template
| |   
* | commit 0a8fceaf101223adcb98fe489a4ac149a10318c6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 26 06:34:15 2011 +0200
| | 
| |     fix swig java syntax error?
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit c31b79516ca797f6ab06a6fe038f3493f15605c0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 03:24:31 2011 +0400
| | 
| |     Improved CDistance parallel implementation
| | 
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/Distance.h
| |   
* | commit 420fce15b0150e5af8c65ad494f8ae570d8c899d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 26 03:23:47 2011 +0400
| | 
| |     Plif fixes
| | 
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| |   
* | commit e4ca15df91b3e0349892d1310f3d6275cbc924b1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 21:58:45 2011 +0200
| | 
| |     attempt to fix the swig enum include path
| | 
| | M	src/interfaces/java_modular/swig_typemaps.i
| |   
* | commit 1b65716a669bfa26848d3e72f60a07ff0a3ee9c2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 21:48:11 2011 +0200
| | 
| |     improve ruby autodetection and fix fail with modshogun and static build
| | 
| | M	src/configure
| |   
* | commit b378001c930117c4a09b2718d5fc4d3711488e59
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 19:45:07 2011 +0200
| | 
| |     add scipy compatibility wrapper for mat_struct
| |     
| |     this should fix the python_modular dynprog example on newer scipy's
| | 
| | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| |   
* | commit 211795471947d2bdbfd4bcb38b70ae254acdacaa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:29:21 2011 +0200
| | 
| |     enum.swg has no deps
| | 
| | M	src/.generate_link_dependencies.py
| |   
* | commit e4af932dee24fffee4796dc2b48a22ab92188918
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:29:12 2011 +0200
| | 
| |     don't check load.lua
| | 
| | M	examples/undocumented/lua_modular/check.sh
| |   
* | commit 1cf46051ebbbe5e936b0ec95da6b72bd9976d871
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:28:13 2011 +0200
| | 
| |     lua example now erases cruft
| | 
| | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| |   
* | commit 967a7f24380f3a8cf37ff01e1998685d09b11d90
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 25 09:12:07 2011 +0200
| | 
| |     add lua modular check-install target
| | 
| | M	src/Makefile.template
| |     
* |   commit a90530ffa67f55cde25543a87dea02d6f82eb9e3
|\ \  Merge: 7e47856 7cf81e6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 24 12:23:43 2011 -0700
| | | 
| | |     Merge pull request #310 from frx/streaming_vw
| | |     
| | |     Some VW improvements and python examples
| | |    
| * | commit 7cf81e67f75ef05ce41449cb4ec8acd98f68eaa5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 15:20:00 2011 +0530
| | | 
| | |     Included VwParser more cleanly in IO.i
| | | 
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/IO_includes.i
| | | M	src/shogun/classifier/vw/VwParser.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | |    
| * | commit 6be180cb73069f1975c1c36dd56c2c047a2f2347
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 07:40:28 2011 +0530
| | | 
| | |     Added VW python example for creating and using cache.
| | | 
| | | A	examples/undocumented/python_modular/streaming_vw_createcache_modular.py
| | |    
| * | commit dcfb2d6501c39c19346b2cb332a826597cdbac62
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 24 07:36:25 2011 +0530
| | | 
| | |     Proper env min/max label updating for cached input in VW.
| | | 
| | | M	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | |    
| * | commit 0c3aaf8cf4ed7749a73ead248ad35994af7d3554
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Wed Aug 24 05:54:01 2011 +0530
| |   
| |       Added VW python example, removed doc warning and added a missing sum_feat_sq init.
| |   
| |   A	examples/undocumented/python_modular/streaming_vw_modular.py
| |   M	src/interfaces/modular/Classifier.i
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   
* | commit 7e47856b8d1c4cf0cd717de044e5e975fa8c4c8a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:54:59 2011 +0400
| | 
| |     Back ASP to work
| | 
| | M	applications/asp/signal_detectors.py
| |   
* | commit ac212b0a3bedb7e6fa78cb8762eceb4a7b724d7f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:53:55 2011 +0400
| | 
| |     Fix for kernelmachine
| | 
| | M	src/shogun/machine/KernelMachine.h
| |   
* | commit 495c1a9d43f0b4837be27be2d5922c4c5f3d543b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 01:39:23 2011 +0400
| | 
| |     Back ARTS to work
| | 
| | M	applications/arts/arts.py
| | M	applications/arts/signal_sensor.py
| |   
* | commit 785447ef394bc84579b207a30dc243623b886bfa
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 24 00:25:14 2011 +0400
| | 
| |     Warnings fixes
| | 
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/clustering/GMM.h
| |   
* | commit 2e88999ab05270d2ff6d6bd3dfb8abe75264dc2e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 23:59:32 2011 +0400
| | 
| |     Improved CDistance brief
| | 
| | M	src/shogun/distance/Distance.h
| |   
* | commit 9f349fd4a341dc94de44b9f73f58c1fca10e49ff
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 15:30:14 2011 +0400
| | 
| |     Added hashset example, fixed fibonacci heap one
| | 
| | M	examples/undocumented/libshogun/Makefile
| | M	examples/undocumented/libshogun/library_fibonacci_heap.cpp
| | A	examples/undocumented/libshogun/library_hashset.cpp
| |   
* | commit 59a6f41cd560720d71eee9af8a6f4ce57fd32b8e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 13:03:01 2011 +0200
| | 
| |     assume make install was called before running lua examples / check.sh
| |     and remove shogun.lua / always use modshogun.Label etc
| | 
| | D	examples/undocumented/lua_modular/MatrixTest.lua
| | D	examples/undocumented/lua_modular/VectorTest.lua
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | M	examples/undocumented/lua_modular/classifier_libsvm_minimal_modular.lua
| | M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | M	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | M	examples/undocumented/lua_modular/features_string_char_modular.lua
| | M	examples/undocumented/lua_modular/kernel_comm_ulong_string_modular.lua
| | M	examples/undocumented/lua_modular/kernel_comm_word_string_modular.lua
| | M	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | M	examples/undocumented/lua_modular/kernel_linear_byte_modular.lua
| | M	examples/undocumented/lua_modular/kernel_linear_word_modular.lua
| | M	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | M	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
| | M	examples/undocumented/lua_modular/regression_krr_modular.lua
| | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| | D	src/interfaces/lua_modular/shogun.lua
| |   
* | commit a5262daf02d733f980285f8ed5849bc9be22ff88
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 12:39:12 2011 +0200
| | 
| |     version will be 1.0.0
| | 
| | M	src/NEWS
| |   
* | commit 79b2a0e2c71dafc8135653220e828ba46f7980b7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 12:38:46 2011 +0200
| | 
| |     use pkg-config for lua autodetection and add make install target
| | 
| | M	src/Makefile.template
| | M	src/configure
| |   
* | commit ff913e79f8a2737c5209b1d10a5b51c8ae42ce03
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 14:53:09 2011 +0400
| | 
| |     Added test for fibonacci heap
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/library_fibonacci_heap.cpp
| |   
* | commit a3f29339a300a673d45957d25e01f52f9c3609a2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 14:15:12 2011 +0400
| | 
| |     Fix for GCArray
| | 
| | M	src/shogun/lib/GCArray.h
| |   
* | commit bc4d5dede0eccbd3faf6654c3e64e563d6f3eeda
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:14:30 2011 +0400
| | 
| |     Fixed doc in wavelet kernel
| | 
| | M	src/shogun/kernel/WaveletKernel.h
| |   
* | commit 4f5eb016b4cf275b1af000c151b3aeaccef40b3f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 23 00:10:03 2011 +0200
| | 
| |     update doxyfile to new dir layout
| | 
| | M	doc/Doxyfile
| |   
* | commit aa4de69be965f85a4a67608fadca162339ae6e4b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:08:55 2011 +0400
| | 
| |     Warning fixes
| | 
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/class_list.h
| | M	src/shogun/classifier/svm/LaRank.h
| | M	src/shogun/classifier/svm/gpm.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/classifier/svm/pr_loqo.h
| | M	src/shogun/distributions/PositionalPWM.h
| | M	src/shogun/io/SerializableAsciiFile.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | M	src/shogun/kernel/SpectrumRBFKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/HashSet.h
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/mathematics/lapack.h
| | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/KernelPCA.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/PCA.h
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | M	src/shogun/regression/svr/SVRLight.h
| | M	src/shogun/ui/GUIFeatures.h
| | M	src/shogun/ui/GUIKernel.h
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit cc4c0a8150db66e4943ac36e81b98757dbf6a2fa
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 23 02:08:45 2011 +0400
| | 
| |     Updated gitignore
| | 
| | M	.gitignore
| |   
* | commit 1a481483e709e3d1a0010e7c8d5bf8bfdeb4333c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:53:02 2011 +0200
| | 
| |     fix unicode error
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 706bca0f20886a435a967167ff0c08477c18a3ee
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 22 23:38:42 2011 +0400
| | 
| |     int32_t const -> const int32_t in dimreductionpreprocessor
| | 
| | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| |   
* | commit d32fded1a786eb61a924b89f4319ed1b1b8c6671
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:36:57 2011 +0200
| | 
| |     move library calls in SGObject into .cpp files and un-inline respective
| |     functions
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
* | commit a57de60ea42475a3fa9ad46187f5cfd639c8a99e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:10:24 2011 +0200
| | 
| |     fix the mutex/spinlock bugs
| | 
| | M	src/configure
| | M	src/shogun/base/Parallel.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 4d7f40adf4d696c809d1bd007dac026e72651561
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:17:36 2011 +0200
| | 
| |     use generic defines for pthread spinlock / mutexes
| | 
| | M	src/shogun/base/SGObject.cpp
| | M	src/shogun/base/SGObject.h
| |   
* | commit e7aed82af8b9cb20c50493c01692314b7f848e36
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 22 21:09:57 2011 +0200
| | 
| |     don't require pry
| | 
| | M	src/interfaces/ruby_modular/modshogun.rb
| |     
* |   commit a715fc7345e206a45dd4f554ad0e7a196c49ccfe
|\ \  Merge: 728d1de 33bac51
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 12:36:32 2011 -0700
| | | 
| | |     Merge pull request #308 from frx/streaming_vw
| | |     
| | |     VW application and option to save predictions to a file
| | |    
| * | commit 33bac515ca12011a9c17411a19e2bf350dcc9478
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 22 20:20:31 2011 +0530
| | | 
| | |     Added vw command line utility to applications/
| | | 
| | | A	applications/vw/vw.cpp
| | |    
| * | commit 7e1f3c981f3410e54201446d5c1f3349dacb06ba
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 22 20:11:50 2011 +0530
| | | 
| | |     Potential StreamingFile close function bug fix; VW output_prediction added.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | M	src/shogun/io/StreamingFile.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | |    
| * | commit b710961447636801ab01779527d9bdb49a509b18
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 21 19:07:08 2011 +0530
| | | 
| | |     Added output_example in VW to save predictions.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | |      
* | |   commit 728d1debc83456344cee03dbdacc2be620501f32
|\ \ \  Merge: a030b01 aafd7fb
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 22 12:36:01 2011 -0700
| | | | 
| | | |     Merge pull request #307 from alesis/gmm
| | | |     
| | | |     Bug fix for GMM.
| | | |     
| * | | commit aafd7fb0c41628fe0b4b3f690e1ba056a6e8853b
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Mon Aug 22 17:08:15 2011 +0100
| | | | 
| | | |     Changed int's to int32_t
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/distributions/Gaussian.cpp
| | | |     
| * | | commit 25572581f053e471d00bcc56dadbcecd25bfb497
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Mon Aug 22 03:42:49 2011 +0100
| | | | 
| | | |     Bug fix for GMM.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
* | | | commit a030b01a95636da704efe0b88fd573a5cfbfe17e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 22 23:10:29 2011 +0400
| | | | 
| | | |     Added necessary include of config header to preprocessors
| | | | 
| | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/Isomap.h
| | | | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/KernelPCA.h
| | | | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/MultidimensionalScaling.h
| | | | M	src/shogun/preprocessor/PCA.h
| | | |     
* | | | commit 80149f4fd54fdc5f2b3089e798a3617ffd45700b
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 22 22:47:47 2011 +0400
| | | | 
| | | |     Improved and renamed arpack wrapper, added libshogun arpack example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/mathematics_arpack.cpp
| | | | M	src/shogun/mathematics/arpack.cpp
| | | | M	src/shogun/mathematics/arpack.h
| | | | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | | |     
* | | | commit 876909b8ef40dc42c7beb543cd6a9b4de0dde89f
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Mon Aug 22 21:06:41 2011 +0400
| | |   
| | |       Added AUTO_TARGET_DIM option for dimensionality reduction preprocessor
| | |   
| | |   M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | |    
* | | commit 904b1a81ed64e0bca09a32a32b521cea47b9e7b0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 19:48:13 2011 +0400
| | | 
| | |     Added kLLE example
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_kernellocallylinearembedding_modular.py
| | |    
* | | commit 0020af834e0356d6bc31914f90ae4360391bdd13
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 15:11:19 2011 +0400
| | | 
| | |     Revert "SGObject mutex to generic lock transition"
| | |     
| | |     This reverts commit ed1846562fef047cca1847d16d79dd3ee8092ac2.
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | |    
* | | commit dfba7da4b357928f53da71fc2192b6c6ea3906d6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:54:41 2011 +0200
| | | 
| | |     fix mutex macro
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 0964f03c35a761148770c09a339e3bb81785963f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:31:53 2011 +0200
| | | 
| | |     it should be NULL in the mutex case
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit ddac14299b350a128f1ec34bc1ad1523276e6c27
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 09:22:24 2011 +0200
| | | 
| | |     add option --rubydir to override ruby installation path
| | | 
| | | M	src/Makefile.template
| | | M	src/configure
| | |    
* | | commit 676fcae4fa148bee3562baa106e85c843fddacd3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 22 06:55:28 2011 +0200
| | | 
| | |     attempt to determine ruby extensions dir and add make install target
| | | 
| | | M	src/Makefile.template
| | | M	src/configure
| | |    
* | | commit 6e02faf18cf65ea3c5f437121814b88695ed74f6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 03:09:41 2011 +0400
| | | 
| | |     Fixes for kLLE
| | | 
| | | M	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | |    
* | | commit 0345166102e7b855a7e8ffed9ac29e22da6b6a50
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 01:18:14 2011 +0400
| | | 
| | |     Introduced kernel LLE
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/KernelLocallyLinearEmbedding.cpp
| | | A	src/shogun/preprocessor/KernelLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit d7f688d2efef86b48d16be55a8e43d9bad8fa073
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Aug 22 00:02:59 2011 +0400
| | | 
| | |     Fix for LLE
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 85ce83d0a70ff64fc02c5ef994a761a9995b1de5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:11:01 2011 +0400
| | | 
| | |     LTSA and HLLE fix for pthread generic routines
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | |    
* | | commit ed1846562fef047cca1847d16d79dd3ee8092ac2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:10:02 2011 +0400
| | | 
| | |     SGObject mutex to generic lock transition
| | | 
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/base/SGObject.h
| | |    
* | | commit 385681be66faf41a3c9d1f002d46781dc942b8a9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 23:06:30 2011 +0400
| | | 
| | |     Changed lock routines to pointer usage
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 15a636a8a29defbe7ebc591d5445fe2e30daad84
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 20:06:43 2011 +0200
| | | 
| | |     add spinlock detection
| | | 
| | | M	src/configure
| | |    
* | | commit 15b3364c22e9cc4610c7efe34463c95492d4e24e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 20:06:32 2011 +0200
| | | 
| | |     should be 0 instead of NULL
| | | 
| | | M	src/shogun/base/Parallel.h
| | |    
* | | commit 36776f501c8ec174b7457a00ef297a6543d19019
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 19:59:03 2011 +0400
| | | 
| | |     Doc improvements for preprocessors, thread naming fixes
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Isomap.cpp
| | | M	src/shogun/preprocessor/Isomap.h
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/MultidimensionalScaling.h
| | |      
* | |   commit 8a410d1a0c3c55c05c25196ab028c3b29d8e2ad1
|\ \ \  Merge: 8631f29 efa826b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Aug 21 08:10:46 2011 -0700
| | | | 
| | | |     Merge pull request #304 from serialhex/master
| | | |     
| | | |     a few additions to the ruby examples & some other stuff...
| | | |     
| * | | commit efa826b2c54431cb640ce2952a218dfe3400566a
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Sat Aug 20 15:19:03 2011 -0400
| | | | 
| | | |     did more work converting files, having some errors and so pushing changes to get errors resolved.
| | | | 
| | | | M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | M	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | M	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | M	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | M	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | M	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | M	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | M	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | M	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | M	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | M	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | M	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | M	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | |     
| * | | commit 9e4fe99e190e9c676dbf6af1c51a8e2c700bdf16
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Fri Aug 19 14:00:44 2011 -0400
| | | | 
| | | |     added a fixer program to make life easier for me && modified the modshogun.rb file
| | | | 
| | | | A	examples/undocumented/ruby_modular/fixer_proggie
| | | | M	src/interfaces/ruby_modular/modshogun.rb
| | | |     
| * | | commit 0f8b2ffc20f757baa2bfb4a4ffea645ac7571e36
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Thu Aug 18 19:16:15 2011 -0400
| | | | 
| | | |     added a 'modshogun.rb' file to do some (ok, eventually a lot) of the ruby start-up stuff, like requiring 'narray' and such.  also completed more examples.  more examples to come!!
| | | | 
| | | | M	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| | | | M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | M	examples/undocumented/ruby_modular/load.rb
| | | | A	src/interfaces/ruby_modular/modshogun.rb
| | | |     
| * | | commit bbde5a93afba6969cc04be2815c00208dc4c487f
|/ / /  Author: Justin Patera <serialhex@gmail.com>
| | |   Date:   Sun Aug 14 16:31:59 2011 -0400
| | |   
| | |       syncing my computers, completed more examples
| | |   
| | |   M	examples/undocumented/ruby_modular/MatrixTest.rb
| | |   M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | |   M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | |   M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | |   M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | |   M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | |    
* | | commit 8631f29e158489cd7c3b7acc049c7d14ef2c228e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Aug 21 16:55:24 2011 +0400
| | | 
| | |     Added %newobject for preprocessor routines creating new objects
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | |    
* | | commit ed016f446b618e9230cf2b431f8a6c84da9401a3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 21 07:14:51 2011 +0200
| | | 
| | |     improve robustness in ruby detection
| | | 
| | | M	src/configure
| | |      
* | |   commit f14ecfb704cc38b74dd4e56028a14d3acaa4e092
|\ \ \  Merge: 23edad1 e030a9e
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Aug 20 21:44:06 2011 -0700
| | |   
| | |       Merge pull request #306 from alesis/gmm
| | |       
| | |       Few documentation additions
| | |    
| * | commit e030a9e1f07f3695ca60b26b32e68cc94c614cf5
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:23:39 2011 +0100
| | | 
| | |     minor fix
| | | 
| | | M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | |    
| * | commit 30231e79e754ae2daa2db46e7b9d475e3c640d9d
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:16:30 2011 +0100
| | | 
| | |     Additional Gaussian documentation.
| | | 
| | | M	src/shogun/distributions/Gaussian.h
| | |    
| * | commit a913153e6c2c4ee9d5f176db4950c56b2ded5d5c
| | | Author: Alesis Novik <alesisnov@gmail.com>
| | | Date:   Sun Aug 21 01:09:57 2011 +0100
| | | 
| | |     Documented GMM examples
| | | 
| | | A	examples/descriptions/modular/clustering_gmm.txt
| | | M	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | |      
* | |   commit 23edad123c29d380d03b0f093b3e6bb6bd15e9cd
|\ \ \  Merge: 0bf8b18 33ba646
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Sat Aug 20 21:43:04 2011 -0700
| | |   
| | |       Merge pull request #305 from frx/streaming_vw
| | |       
| | |       Added exact adaptive norm to VW and corrected train declaration.
| | |    
| * | commit 33ba64662873a7de314e90093e1b333a4a044973
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Aug 21 04:34:04 2011 +0530
| |   
| |       Added exact adaptive norm to VW and corrected train declaration.
| |   
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   
* | commit 0bf8b18b176d7ac352f220286d9a45ba1f5b0ec9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 02:47:35 2011 +0400
| | 
| |     Added apply_to_string_features method to kPCA
| | 
| | M	src/shogun/preprocessor/KernelPCA.cpp
| | M	src/shogun/preprocessor/KernelPCA.h
| |   
* | commit 8d8cfd85d931a5b5184e79e03be677a8606a6469
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 02:47:12 2011 +0400
| | 
| |     Fixed m_eigenvalues handling in MDS
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit e8bff92ca0d630234c07f734606485f6c0a28eb7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 21 00:00:20 2011 +0200
| | 
| |     don't call library function in header file Parallel.h -> move it to .cpp
| | 
| | M	src/shogun/base/Parallel.cpp
| | M	src/shogun/base/Parallel.h
| |   
* | commit a7f397a6eff817ff3e5a69dd4bc53d888d061396
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:41:16 2011 +0400
| | 
| |     Fixed swissroll example
| | 
| | M	examples/undocumented/python_modular/graphical/swissroll.py
| |   
* | commit 2fec2bb78a6d9b91228b89608b0c3f1da76a32bc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:40:45 2011 +0400
| | 
| |     Usage of PTHREAD_LOCK in LTSA and HLLE
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 7bcf36217629bb87ef925ac85299a529da953fb4
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:40:24 2011 +0400
| | 
| |     Changed thread checking flag in LLE
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
* | commit 79aa66b056af3d33fdb8cc3d162b83378086cc1d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:39:18 2011 +0400
| | 
| |     Added macro definition of PTHREAD_LOCK_T with priority to spinlock if available
| | 
| | M	src/shogun/base/Parallel.h
| |   
* | commit 87ccc1077aeda0ac59f3cc69c38b26629e2a1cd9
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:38:37 2011 +0400
| | 
| |     Changed thread checking flags in Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit f73e42aed8c963daabb8fc43c9edc8abd20c2245
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 01:36:25 2011 +0400
| | 
| |     Added HAVE_PTHREAD flag
| | 
| | M	src/configure
| |   
* | commit ba59f81b2b3d0d99423bba3021bf9a8a72446726
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 00:01:05 2011 +0400
| | 
| |     Updated dimension reduction examples
| | 
| | M	examples/undocumented/python_modular/graphical/hemisphere.py
| | M	examples/undocumented/python_modular/graphical/swissroll.py
| |   
* | commit 37c5df65c572c6adef6c975ee3bd5577ab273cbc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 21 00:00:19 2011 +0400
| | 
| |     Got rid of custom distance usage in Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 226853f9e0a5f1074c5266c219c5bb16a8fb8b7d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 19:57:32 2011 +0200
| | 
| |     fail when java/ruby/lua are enabled but not found
| | 
| | M	src/configure
| |   
* | commit 569d85e895f8f79b477472f8f0e0e361114a1cef
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 14:46:18 2011 +0400
| | 
| |     Yet another warnings removal
| | 
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/base/class_list.h
| | M	src/shogun/base/init.h
| | M	src/shogun/distance/Distance.h
| | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | M	src/shogun/io/SGIO.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/WaveletKernel.h
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/lib/Compressor.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| | M	src/shogun/regression/Regression.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIHMM.h
| | M	src/shogun/ui/GUIMath.h
| | M	src/shogun/ui/GUITime.h
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit 2ca6531d7c12e71900b769b61a58083113135ce6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 14:06:14 2011 +0400
| | 
| |     Updated gitignore
| | 
| | M	.gitignore
| |   
* | commit 7d3b6136487dd2df82c41e6d679016e2b97613ad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 07:22:28 2011 +0200
| | 
| |     improve mono tests
| | 
| | M	examples/undocumented/csharp_modular/check.sh
| |   
* | commit 57c1c84d9d86fad723b51bdd0b5a00fb2138b890
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 20 07:16:15 2011 +0200
| | 
| |     improve java's check.sh
| | 
| | M	examples/undocumented/java_modular/check.sh
| |   
* | commit f192c4480d33b501d7adcb2aa972a83f5dce63f1
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:16:33 2011 +0400
| | 
| |     Warning fixes
| | 
| | M	src/shogun/base/ParameterMap.h
| | M	src/shogun/classifier/KNN.h
| | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | M	src/shogun/classifier/svm/GMNPSVM.h
| | M	src/shogun/classifier/svm/libqp.h
| | M	src/shogun/io/SerializableAsciiReader00.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/WaveletKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIDistance.h
| | M	src/shogun/ui/GUILabels.h
| | M	src/shogun/ui/GUIPluginEstimate.h
| | M	src/shogun/ui/GUIPreprocessor.h
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit ae7dc3eff77bd427665fb9ce528b038945d85944
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:04:26 2011 +0400
| | 
| |     Updated kPCA java modular example
| | 
| | A	examples/undocumented/java_modular/preprocessor_kernelpca_modular.java
| | D	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| |   
* | commit 92a2edbe1cd91800519c6364d607139d5e099038
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 01:01:37 2011 +0400
| | 
| |     Updated kPCA ruby example
| | 
| | A	examples/undocumented/ruby_modular/preprocessor_kernelpca_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| |   
* | commit d88e533d8c34392ae9a4f62df3acb7a3e070fc4a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 00:59:55 2011 +0400
| | 
| |     Updated kPCA python modular example
| | 
| | A	examples/undocumented/python_modular/preprocessor_kernelpca_modular.py
| | D	examples/undocumented/python_modular/preprocessor_kernelpcacut_modular.py
| |   
* | commit 16c77fc98f9c370e1e44b120c7b4129a5d3477d8
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 20 00:55:42 2011 +0400
| | 
| |     Made PCA preprocessor inherited from DimensionReductionPreprocessor, renamed KernelPCACut to KernelPCA
| | 
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | A	src/shogun/preprocessor/KernelPCA.cpp
| | A	src/shogun/preprocessor/KernelPCA.h
| | D	src/shogun/preprocessor/KernelPCACut.cpp
| | D	src/shogun/preprocessor/KernelPCACut.h
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PCA.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit aa7f5949443a7a25d7a67e59765dc26d340abfb6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:46:43 2011 +0200
| | 
| |     document BaumWelchViterbiType
| | 
| | M	src/shogun/distributions/HMM.h
| |   
* | commit 618179a6ff2d5a8dbf81b0f538650d536319e5bc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:45:59 2011 +0200
| | 
| |     remove extern SGIO statement
| | 
| | M	src/shogun/base/DynArray.h
| |   
* | commit b6a1b121f654e9d7083b80530cfd96eee7c625c5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:45:23 2011 +0200
| | 
| |     fix type definitions and properly document types up to 1024bit integers
| | 
| | M	src/shogun/lib/DynInt.h
| |   
* | commit 24610e5b7a80c57d8600cb76d7880f379de319bd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:36:06 2011 +0200
| | 
| |     fix documentation in SNPstringkernel
| | 
| | M	src/shogun/kernel/SNPStringKernel.h
| |   
* | commit d0c6dda50d7f0444b04295af0bd8b5e553b6a2bd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 21:32:58 2011 +0200
| | 
| |     Fix documentation in structure.
| | 
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| |   
* | commit df7739a3b05aa20e4fa927589183c45e596772fa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 20:15:16 2011 +0200
| | 
| |     fix ppwm example and disable crashing parts in structure_*
| | 
| | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | M	examples/undocumented/python_modular/structure_dynprog_modular.py
| |   
* | commit 482439850cf81d2e18992939243af9734f069de6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 21:50:18 2011 +0400
| | 
| |     Fixed spinlock inits
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |   
* | commit 77c1f2b5b501f2ae3699682fc25451502c875b74
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 19:52:43 2011 +0400
| | 
| |     Made 100 warnings left
| | 
| | M	src/shogun/evaluation/CrossValidation.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/ui/GUIFeatures.h
| |   
* | commit 92c21ec8abae5041c9bfbff47dd8667dc59de1ef
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 15:58:04 2011 +0400
| | 
| |     Spinlock instead of mutex
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| |   
* | commit c0f76ee2b59abab10179989b17fce3fb8a3a051b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 15:55:08 2011 +0400
| | 
| |     Made neighbor search parallel in LocallyLinearEmbedding
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| |   
* | commit 936bcdfde7c8ef95a69a35efb95a4f683e28f47e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 13:30:19 2011 +0200
| | 
| |     fix a few warnings in DynProg
| | 
| | M	src/shogun/structure/DynProg.h
| |   
* | commit a4e2ac16a689104a79db5f0861beb6118fe71ba1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 12:19:40 2011 +0200
| | 
| |     forgot escaping args
| | 
| | M	examples/undocumented/libshogun/check.sh
| |   
* | commit 4d140a344b13f426b3c77d618a4fd3e37b3b9cd4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 12:06:42 2011 +0200
| | 
| |     fix check.sh and add return 0 to examples missing the statement
| | 
| | M	examples/undocumented/libshogun/check.sh
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/streaming_onlinesvmsgd.cpp
| | M	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| | M	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| |   
* | commit 316fcc9134945c6d50b9e88cceb758b77701e519
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 11:13:17 2011 +0200
| | 
| |     add escaped quotes to libshogun check
| | 
| | M	examples/undocumented/libshogun/check.sh
| |   
* | commit 201a95810f238f055ea08afaad11e33e7a13c370
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:46:43 2011 +0200
| | 
| |     add check.sh script to libshogun to follow the same testing principle
| |     and really exit 1 on failure
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| | M	src/Makefile.template
| |   
* | commit 675a2a7444813762fabb8a1d444ae4bd8f461cdd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:16:10 2011 +0200
| | 
| |     fix r static doc install path
| | 
| | M	src/Makefile.template
| |   
* | commit dd04e8dce7e1d84cf2cfb5983ef7022d8b8c068f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 10:15:46 2011 +0200
| | 
| |     exit 0 upon examples running all OK
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 9475428ad69fed8387f4c359b4daa48a3e688f3a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 09:54:42 2011 +0200
| | 
| |     collect all errors in error.log and show them at the end in detail
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 90c20fe79d819a922b43b6cc6cf18574a61dfa3e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 07:09:16 2011 +0200
| | 
| |     remove unsupported example
| | 
| | D	examples/undocumented/python_static/kernel_linearbyte.py
| |   
* | commit 46db854de281cccbb263dc03ab81dbbe81b24d45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Aug 19 04:34:02 2011 +0400
| | 
| |     Efficient matrix centering instead of crappy dgemms for MDS
| | 
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit 5ed8a9a7a14ba20620a5836682aac81c0a60e026
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 00:55:51 2011 +0200
| | 
| |     don't run for loop in a sub shell
| | 
| | M	examples/undocumented/python_static/check.sh
| |   
* | commit 5a0fd39c670b8a13ef907812e744b10e95fcda5e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 19 00:14:33 2011 +0200
| | 
| |     exit 1 on error at the end of running check.sh
| | 
| | M	examples/undocumented/cmdline_static/check.sh
| | M	examples/undocumented/lua_modular/check.sh
| | M	examples/undocumented/matlab_and_octave/check.sh
| | M	examples/undocumented/octave_modular/check.sh
| | M	examples/undocumented/python_modular/check.sh
| | M	examples/undocumented/python_static/check.sh
| | M	examples/undocumented/r_modular/check.sh
| | M	examples/undocumented/r_static/check.sh
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 615d2a2971937134506c051c64fd6b46836e25f4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 23:47:22 2011 +0200
| | 
| |     add flag LIBS_ADD to add libs in addition to LIBS
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
* | commit f5254def209db1bcba5df0bb8af4a9b7489faa4f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 23:36:36 2011 +0200
| | 
| |     add -llapack in examples
| | 
| | M	examples/undocumented/libshogun/Makefile
| |   
* | commit 33a399d5850aff2c05de61bb043fb95764a624f7
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 18 22:55:52 2011 +0200
| | 
| |     create documented examples for all supported languages and move the
| |     dimreduct examples one dir up
| | 
| | M	examples/generate_documented.sh
| | D	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | D	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | A	examples/undocumented/python_modular/graphical/hemisphere.py
| | A	examples/undocumented/python_modular/graphical/swissroll.py
| |     
* |   commit 2ac0b0f70c03b0b70e13ac0b3ad63b7f4822f209
|\ \  Merge: db25278 1807bc2
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 19 00:45:43 2011 +0400
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit 1807bc2fd4a1d22d3e23fde38d6ba101ef23da6f
| |\ \  Merge: 3747c4d b0eb823
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 18 22:39:08 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 3747c4d2196fbc29f48c1466f33fb9144542d41b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 18 22:37:50 2011 +0200
| | | | 
| | | |     ignore __STDC_FORMAT_MACROS in modular interfaces
| | | | 
| | | | M	src/interfaces/modular/modshogun_ignores.i
| | | |     
* | | | commit db25278f1ab734e07b2f838b728c50c7e10ada0e
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Fri Aug 19 00:45:01 2011 +0400
| | |   
| | |       Update MDS thread doc
| | |   
| | |   M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | |    
* | | commit b0eb823054a460c92f255cf0fd4a2191e35a64fd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 19 00:27:28 2011 +0400
| | | 
| | |     Warning removal
| | | 
| | | M	src/shogun/evaluation/CrossValidation.h
| | | M	src/shogun/evaluation/SplittingStrategy.h
| | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | M	src/shogun/io/SerializableHdf5File.cpp
| | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | M	src/shogun/kernel/LinearKernel.h
| | | M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | | M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | M	src/shogun/modelselection/ParameterCombination.h
| | | M	src/shogun/structure/PlifMatrix.h
| | | M	src/shogun/ui/GUIClassifier.h
| | | M	src/shogun/ui/SGInterface.h
| | |    
* | | commit a3b620347a85f3a23121cfbe6005bd86a39b61b3
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Fri Aug 19 00:10:34 2011 +0400
| |   
| |       Updated news and contributions
| |   
| |   M	src/CONTRIBUTIONS
| |   M	src/NEWS
| |     
* |   commit 12b8f955acd01715e409e6e1b6f9ba543ec32fea
|\ \  Merge: bd8f328 09fc587
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 18 10:55:12 2011 -0700
| | | 
| | |     Merge pull request #303 from karlnapf/master
| | |     
| | |     serialization of SGMatrix/SGVector
| | |    
| * | commit 09fc58738e519b3745a604b993526ce3b8c1c5ff
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 19:07:07 2011 +0200
| | | 
| | |     removed example from makefile due to build errors
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| * | commit 2ef9ff1403c527e21ccfa7ca2f38f8064127a6b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:55:46 2011 +0200
| | | 
| | |     added include paths for serialization example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| * | commit 00db8238c2505d955d252c907faa3544ba413dfd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:53:50 2011 +0200
| | | 
| | |     applieed container type changes to all serializable files
| | | 
| | | M	src/shogun/io/SerializableHdf5File.cpp
| | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | M	src/shogun/io/SerializableJsonFile.cpp
| | | M	src/shogun/io/SerializableJsonReader00.cpp
| | | M	src/shogun/io/SerializableXmlFile.cpp
| | | M	src/shogun/io/SerializableXmlReader00.cpp
| | |    
| * | commit ea55bc47b9390227fc199d6d36594732233fdc5c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 18:53:15 2011 +0200
| | | 
| | |     removed old serialization test and replaced by more complex one
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | D	examples/undocumented/libshogun/serialization_ascii.cpp
| | | A	examples/undocumented/libshogun/serialization_vector_matrix.cpp
| | |    
| * | commit 5866167769abec1e0de66c667d01ab50f6cc36c2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 16:26:34 2011 +0200
| | | 
| | |     made type enums fixed
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit dd907810dae569d416dac47062a601fb690b2a33
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Aug 18 13:37:34 2011 +0200
| |   
| |       put the new container types at the end to preserve original order
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit bd8f328f711bf20bd7b313ec91fe9de5f556842e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 17:35:21 2011 +0400
| | 
| |     Added SGREFing while applying to feature matrices in dimensionality reduction preprocessors, fixed wrong already owned matrices return in MDS and Isomap
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit bd45c6ca83b1ab9b8f2f1ed2cef13beaceebb194
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 15:27:08 2011 +0400
| | 
| |     More UI warnings removal
| | 
| | M	src/shogun/mathematics/Loss.h
| | M	src/shogun/ui/GUIClassifier.h
| | M	src/shogun/ui/GUIDistance.h
| | M	src/shogun/ui/GUIFeatures.h
| | M	src/shogun/ui/GUIPluginEstimate.h
| | M	src/shogun/ui/GUIStructure.h
| |     
* |   commit 9f7740af9bbd28bf0a90a16f273029755815538a
|\ \  Merge: 560d6cd 9474929
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 18 03:59:31 2011 -0700
| | | 
| | |     Merge pull request #302 from karlnapf/master
| | |     
| | |     working SGVector serialization
| | |    
| * | commit 94749298c576c4b63ce33fb2c1b696a9ad04dd4a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:56:40 2011 +0200
| | | 
| | |     added forgotten switch cases for the CT_SGMATRIX container type
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
| * | commit 6ffea7ba25d4e8bd7a8d90ac11dbd1830662a8f5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:44:39 2011 +0200
| | | 
| | |     made matrix free methods virtual
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit c3e2390aedfdb42a2e14fcd6aa42720b619de0bc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:37:38 2011 +0200
| | | 
| | |     introduced new container type CT_SGMATRIX for SGMatrix (de)serialization
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | | M	src/shogun/lib/DataType.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit d3c1cdb40b008b335fc1040d3973edc83a0df53c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:15:59 2011 +0200
| | | 
| | |     uncommented SGCachedVector
| | | 
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit 40ae0c1ef81a04f38dd9614fe56f35e6db39715e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:06:50 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
| * | commit 9eeee722e235c9738ae0b56559d250ca0eb1d1cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:06:18 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | |    
| * | commit 1994af6aef11837e3a567cec656dce4dc9367aba
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:05:35 2011 +0200
| | | 
| | |     removed unnecessary const
| | | 
| | | M	src/shogun/base/Version.h
| | | M	src/shogun/features/Features.h
| | | M	src/shogun/features/Labels.h
| | |    
| * | commit f059083741272ad277cdd527935fca4b87c919e0
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 18 12:05:14 2011 +0200
| | | 
| | |     introduced new container type CT_SGVECTOR which is now used for SGVector (de)serialization
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
| * | commit f26aed8a98861a6e346c864d234789769ea1d6ff
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Aug 17 12:06:48 2011 +0200
| |   
| |       Revert "temporary workaround for crasher in serialization"
| |       
| |       This reverts commit 49ff85135f6e96fe2527846e316f85f02f6980ca.
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit 560d6cd09049be48a410bea21f0c5107c972f1c2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 12:46:20 2011 +0400
| | 
| |     Various UI warnings fixes
| | 
| | M	src/shogun/ui/GUIHMM.h
| | M	src/shogun/ui/GUIKernel.h
| | M	src/shogun/ui/GUILabels.h
| | M	src/shogun/ui/GUIMath.h
| | M	src/shogun/ui/GUIPreprocessor.h
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/GUITime.h
| | M	src/shogun/ui/SGInterface.h
| |     
* |   commit 2a787b970d9ceeedff877d04e18f2b2979a196c8
|\ \  Merge: 96da4ad 462bf99
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 17 23:32:28 2011 +0200
| | | 
| | |     Merge branch 'master' of ssh://shogun-toolbox.org/shogun
| | |    
| * | commit 462bf999b4e833c9d594ec7bd379cc0f5cf7c99a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Aug 18 01:19:37 2011 +0400
| | | 
| | |     NEWS update
| | | 
| | | M	src/NEWS
| | |    
* | | commit 96da4adbfe7a8e866b48aeff17343bb270a3fe22
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Aug 17 23:30:49 2011 +0200
| |   
| |       fix compile errors detected by nightly_all
| |   
| |   M	src/interfaces/cmdline_static/CmdLineInterface.h
| |   M	src/shogun/base/DynArray.h
| |   
* | commit 636c1faece07f78356d41f4999ad5775765fd0bb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 23:05:35 2011 +0200
| | 
| |     fix warning in logsum_array
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 3d3eae40ec170cba6297dc9a9deca0b1f8c7779f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 23:05:12 2011 +0200
| | 
| |     mention that we support matlab 2011a now too
| | 
| | M	src/NEWS
| |   
* | commit 36676f3321c5fc88b88c4aa5f300a24237fd09c0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Aug 18 00:51:49 2011 +0400
| | 
| |     SGInterface doxygen warning removal
| | 
| | M	src/shogun/ui/SGInterface.h
| |   
* | commit a73d0cba249d1f5e98c35f4e64ad1b0db7123bb0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 22:01:27 2011 +0200
| | 
| |     transition further parts to SG* datatypes in structure/
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/structure/PlifMatrix.h
| | M	src/shogun/ui/SGInterface.cpp
| |     
* |   commit b477e8dac7713349d2ad26ab2e7ab41153e5dc8f
|\ \  Merge: eb4c839 f851c74
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 17 11:40:29 2011 -0700
| | | 
| | |     Merge pull request #301 from frx/streaming_vw
| | |     
| | |     VW in modular interfaces
| | |    
| * | commit f851c74af558c4f8c78a58d8f643070a401b2391
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Aug 18 00:05:22 2011 +0530
| | | 
| | |     Readded StreamingFileFromFeatures to modular.
| | | 
| | | M	src/interfaces/modular/IO.i
| | |    
| * | commit ed771b88794f539d927aac3387ac179de04935e8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Aug 17 20:35:09 2011 +0530
| | | 
| | |     A couple of documentation additions.
| | | 
| | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | |    
| * | commit 79ae518b40bf6c8b181414f070f690fd34040c59
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Wed Aug 17 20:25:39 2011 +0530
| |   
| |       Added VW to swig definitions.
| |   
| |   M	src/interfaces/modular/Classifier.i
| |   M	src/interfaces/modular/Classifier_includes.i
| |   M	src/interfaces/modular/Features.i
| |   M	src/interfaces/modular/IO.i
| |   M	src/interfaces/modular/IO_includes.i
| |   
* | commit eb4c839621903a1acdbbb437c423f36cb0387aad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:19:02 2011 +0200
| | 
| |     start to transition structure to SG* data types
| | 
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/DynProg.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/structure/PlifMatrix.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 9761262efe2ada47a4eed4d21193ccaf38b4dac2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:18:31 2011 +0200
| | 
| |     rename lenght -> len to fix warning about naming collision
| | 
| | M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   
* | commit d2662fe3a02406c9f271c21bbf2f1014891e250a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Aug 17 10:18:03 2011 +0200
| | 
| |     fix SGNDArray python typemap
| | 
| | M	src/interfaces/python_modular/swig_typemaps.i
| |   
* | commit e271fc67e52b38915d0f75a90d9cb4c16c26fd79
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 04:07:29 2011 +0400
| | 
| |     Fixed mistakes in doc of dim reduction preprocessors
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit 6e008b46682ff65db18c889f3ba7c9f4db49ba59
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 03:02:13 2011 +0400
| | 
| |     Temporary? hack for JAVA externalization
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |   
* | commit 8f5d697debf68ae3ec3fdc7c7f0ae1d60de3caa7
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Aug 17 01:57:05 2011 +0400
| | 
| |     Java externalization fixes
| | 
| | M	src/interfaces/modular/Library.i
| | M	src/interfaces/modular/ModelSelection.i
| | M	src/interfaces/modular/SGBase.i
| |     
* |   commit a419f9b4cb5a6111f29c1c0a029a781a2ea81786
|\ \  Merge: 2d2391f 4b721c8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Aug 17 01:56:27 2011 +0400
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit 4b721c832eb58e2e8e692f9096513ddf6017f5b8
| |\ \  Merge: 54d0eba 094d8ec
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 16 14:55:14 2011 -0700
| | | | 
| | | |     Merge pull request #300 from frx/streaming_vw
| | | |     
| | | |     SGD using CStreamingVwFeatures
| | | |     
| | * | commit 094d8ec97d51f9bcddc8aa565aae850c33177d4e
| |/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Aug 17 03:11:22 2011 +0530
| | |   
| | |       Corrections to expand_if_required for StreamingVwFeatures.Added StreamingVwFeatures example.
| | |   
| | |   A	examples/undocumented/libshogun/streaming_vwfeatures.cpp
| | |   M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| | |   M	src/shogun/features/StreamingVwFeatures.h
| | |    
* | | commit 2d2391fecda18f593b67e2b2f917421cdb82bfde
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Aug 17 01:55:07 2011 +0400
| |   
| |       Warning fixes
| |   
| |   M	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| |   M	src/shogun/classifier/svm/LaRank.h
| |   M	src/shogun/distributions/PositionalPWM.h
| |   M	src/shogun/features/LBPPyrDotFeatures.h
| |   M	src/shogun/io/SerializableAsciiFile.h
| |   M	src/shogun/io/SerializableFile.h
| |   M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| |   M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| |   M	src/shogun/kernel/SpectrumRBFKernel.h
| |   M	src/shogun/modelselection/GridSearchModelSelection.h
| |   M	src/shogun/modelselection/ParameterCombination.h
| |   
* | commit 54d0eba693f34b9e7c41418f822d0bc4685dd748
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 23:06:02 2011 +0200
| | 
| |     fix compile error when logsumarray is enabled
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 49ff85135f6e96fe2527846e316f85f02f6980ca
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 22:58:58 2011 +0200
| | 
| |     temporary workaround for crasher in serialization
| | 
| | M	src/shogun/lib/DataType.h
| |   
* | commit 6446418311c1fec50dd8f8aabd54172d734dbe2a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 22:42:35 2011 +0200
| | 
| |     unignore a few more classes like SGIO, version, ...
| | 
| | M	src/interfaces/modular/modshogun_ignores.i
| |     
* |   commit 14d5e3442752a66f300facd8adf0d4ce974c749d
|\ \  Merge: 747d65d 98fea46
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 16 08:19:06 2011 -0700
| | | 
| | |     Merge pull request #299 from karlnapf/master
| | |     
| | |     added example/test for stratified cross-validation splitting
| | |    
| * | commit 98fea466bf6737085daffb956a8aa94d165d995b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:48 2011 +0200
| | | 
| | |     added get_classes method and made get_num_classes method more general
| | | 
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | |    
| * | commit 149fb3bdcf7a0cb414603682635189819211217d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:27 2011 +0200
| | | 
| | |     added get_array() method
| | | 
| | | M	src/shogun/lib/Set.h
| | |    
| * | commit 26cd4949de55eb5eb82f7a4a8a4e9171b9c7e75d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:13:17 2011 +0200
| | | 
| | |     added checks for "stupid" combinations of num_labels and num_subsets
| | | 
| | | M	src/shogun/evaluation/SplittingStrategy.cpp
| | |    
| * | commit 30d3b54b51ffd53178fb0600fcfa6f0ffb8d85f3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 17:12:21 2011 +0200
| | | 
| | |     added example/test for stratified xval-splitting
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | | A	examples/undocumented/libshogun/splitting_stratified_crossvalidation.cpp
| | |    
| * | commit d6fd81c33727955a2828a1d3ee937b93fba7e9ab
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Aug 16 14:37:13 2011 +0200
| | | 
| | |     -comment change
| | |     -applied changed from CSplittingStrategy
| | | 
| | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | |    
| * | commit 8c2f0e1d33495ce5fa9456cadf4628e1549137f2
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Tue Aug 16 14:36:39 2011 +0200
| |   
| |       -introduced init method
| |       -made class serializable
| |       -put array from stack to heap
| |       -formatting changes
| |   
| |   M	src/shogun/evaluation/SplittingStrategy.cpp
| |   M	src/shogun/evaluation/SplittingStrategy.h
| |   
* | commit 747d65d2752714f7669115d246e8a38410f4bd04
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 16:49:53 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/classifier/KNN.h
| | M	src/shogun/classifier/mkl/MKL.h
| | M	src/shogun/distance/KernelDistance.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/ANOVAKernel.h
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/ExponentialKernel.h
| | M	src/shogun/kernel/GaussianKernel.h
| | M	src/shogun/kernel/HistogramIntersectionKernel.h
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | M	src/shogun/kernel/SpectrumRBFKernel.h
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/modelselection/ModelSelection.h
| | M	src/shogun/modelselection/ModelSelectionParameters.h
| |   
* | commit 703659c1938de7fdeef6e54321c1b336c5aa3261
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 14:36:22 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/base/ParameterMap.h
| | M	src/shogun/kernel/ANOVAKernel.h
| | M	src/shogun/kernel/BesselKernel.h
| | M	src/shogun/kernel/CircularKernel.h
| | M	src/shogun/kernel/DistanceKernel.h
| | M	src/shogun/kernel/DistantSegmentsKernel.h
| | M	src/shogun/kernel/ExponentialKernel.h
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/machine/Machine.h
| | M	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit edc7424d50f6b2756b3ff5201447a98e662a5e19
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 14:12:00 2011 +0400
| | 
| |     Doc safari
| | 
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/base/SGObject.h
| | M	src/shogun/classifier/GaussianNaiveBayes.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/Subset.h
| | M	src/shogun/io/File.h
| | M	src/shogun/io/SGIO.h
| | M	src/shogun/io/SerializableAsciiFile.h
| | M	src/shogun/io/SerializableAsciiReader00.h
| | M	src/shogun/io/SerializableFile.h
| | M	src/shogun/kernel/RationalQuadraticKernel.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/DynamicArray.h
| | M	src/shogun/lib/DynamicObjectArray.h
| |   
* | commit 3f2cb7ea17f9163dbedd8aa1cac27a3da38e7a7e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Aug 16 11:13:24 2011 +0200
| | 
| |     use matlabroot to determine matlab root path
| |     
| |     hopefully fixes matlab 2011a compile issues
| | 
| | M	src/configure
| |     
* |   commit 41e3393cc32002bbedbcfa94ee03935016a4ffd8
|\ \  Merge: 1e71db1 6b4e7a2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Aug 16 00:28:35 2011 -0700
| | | 
| | |     Merge pull request #298 from frx/streaming_vw
| | |     
| | |     Added VW example and fixed a write-mode argument in IOBuffer.
| | |    
| * | commit 6b4e7a242e02ba0e0a9b24152c80a336c17d857e
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Aug 16 12:30:40 2011 +0530
| |   
| |       Added VW example and fixed a write-mode argument in IOBuffer.
| |   
| |   A	examples/undocumented/libshogun/streaming_vowpalwabbit.cpp
| |   M	src/shogun/io/IOBuffer.cpp
| |   
* | commit 1e71db163be8aa59f5ab16d668d1a827c541c800
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 02:04:10 2011 +0400
| | 
| |     More warning hunt
| | 
| | M	src/shogun/base/Parallel.h
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/Features.h
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/Subset.h
| | M	src/shogun/lib/DataType.h
| |     
* |   commit d05ad85d65ccf061cf9121717715adcdeb8414f7
|\ \  Merge: 4826d03 693acf9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 14:57:31 2011 -0700
| | | 
| | |     Merge pull request #297 from frx/streaming_vw
| | |     
| | |     Missing/incorrect doc additions and corrections, plus load_regressor() for VW
| | |    
| * | commit 693acf90b7236e9390421b90da0445afa2a81668
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Aug 16 03:15:42 2011 +0530
| | | 
| | |     Reverted Doxyfile.
| | | 
| | | M	doc/Doxyfile
| | |    
| * | commit f2cce5fbbe9184cf22ff8686c38714d15310cbe3
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Aug 16 03:14:59 2011 +0530
| |   
| |       Fixed most online framework warnings.
| |   
| |   M	doc/Doxyfile
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.h
| |   M	src/shogun/classifier/vw/VwParser.h
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   M	src/shogun/classifier/vw/cache/VwCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| |   M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| |   M	src/shogun/classifier/vw/vw_common.h
| |   M	src/shogun/features/StreamingDotFeatures.h
| |   M	src/shogun/io/InputParser.h
| |   M	src/shogun/io/ParseBuffer.h
| |   M	src/shogun/io/StreamingAsciiFile.h
| |   M	src/shogun/io/StreamingFileFromFeatures.h
| |   M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| |   M	src/shogun/io/StreamingFileFromSparseFeatures.h
| |   M	src/shogun/io/StreamingFileFromStringFeatures.h
| |   M	src/shogun/io/StreamingVwCacheFile.h
| |   M	src/shogun/io/StreamingVwFile.h
| |   M	src/shogun/lib/v_array.h
| |   M	src/shogun/loss/HingeLoss.h
| |   M	src/shogun/loss/LogLoss.h
| |   M	src/shogun/loss/LogLossMargin.h
| |   M	src/shogun/loss/LossFunction.h
| |   M	src/shogun/loss/SmoothHingeLoss.h
| |   M	src/shogun/loss/SquaredHingeLoss.h
| |   M	src/shogun/loss/SquaredLoss.h
| |   
* | commit 4826d0374280e14b344be2471e3d2c49b5e5bb93
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 00:41:33 2011 +0400
| | 
| |     Moar doc
| | 
| | M	src/shogun/classifier/svm/LibSVM.h
| | M	src/shogun/classifier/svm/MultiClassSVM.h
| | M	src/shogun/classifier/svm/QPBSVMLib.h
| | M	src/shogun/classifier/svm/SVMOcas.h
| | M	src/shogun/distributions/PositionalPWM.h
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/lib/FibonacciHeap.h
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 9d2dd548c70bff45d8ac5a1aa00556ca425ef365
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Tue Aug 16 00:16:25 2011 +0400
| | 
| |     Updated doc for dimensionality reduction algorithms
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit bcf30020cffb01e6985c6cea76914a75dc3f3b36
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 15 21:53:03 2011 +0200
| | 
| |     LOCACCURACY is only available w/ LOGCACHE
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 9ca73170fb0f87974a3fcd3342136130d6b16544
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Aug 15 21:29:17 2011 +0200
| | 
| |     fix build failure in ui trying to access protected member variable
| | 
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/ui/SGInterface.cpp
| |     
* |   commit 2f343fb916cf3f356ac2a5acf33fc0450c2e299b
|\ \  Merge: 62e6aee e034620
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 11:44:05 2011 -0700
| | | 
| | |     Merge pull request #295 from frx/conv_to_32
| | |     
| | |     Conversion of weight vector and related parameters to float in Online Framework
| | |    
| * | commit e03462098c2f454b366d1380d82af5b647059c33
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 15 06:31:25 2011 +0530
| | | 
| | |     Remove a doc typo.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | |    
| * | commit 29768347939812366225f9b324e5eb9655c235c3
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Aug 15 03:01:28 2011 +0530
| | | 
| | |     Working float64_t to float32_t transition for online framework.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | M	src/shogun/features/StreamingDotFeatures.h
| | | M	src/shogun/features/StreamingFeatures.h
| | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | M	src/shogun/features/StreamingSparseFeatures.h
| | | M	src/shogun/features/StreamingStringFeatures.h
| | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | M	src/shogun/features/StreamingVwFeatures.h
| | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | M	src/shogun/io/StreamingAsciiFile.h
| | | M	src/shogun/io/StreamingFile.cpp
| | | M	src/shogun/io/StreamingFile.h
| | | M	src/shogun/io/StreamingFileFromFeatures.cpp
| | | M	src/shogun/io/StreamingFileFromFeatures.h
| | | M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| | | M	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | M	src/shogun/io/StreamingFileFromStringFeatures.h
| | | M	src/shogun/io/StreamingVwCacheFile.cpp
| | | M	src/shogun/io/StreamingVwCacheFile.h
| | | M	src/shogun/io/StreamingVwFile.cpp
| | | M	src/shogun/io/StreamingVwFile.h
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | M	src/shogun/machine/OnlineLinearMachine.h
| | | M	src/shogun/mathematics/Math.cpp
| | |    
| * | commit 692f79feae4a8c516ec57eb181aa12cca620295e
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Mon Aug 15 01:10:29 2011 +0530
| |   
| |       Partial transition to float32_t for online framework.
| |   
| |   M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| |   M	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   M	src/shogun/features/StreamingDotFeatures.h
| |   M	src/shogun/features/StreamingFeatures.h
| |   M	src/shogun/features/StreamingSimpleFeatures.h
| |   M	src/shogun/features/StreamingSparseFeatures.h
| |   M	src/shogun/features/StreamingStringFeatures.h
| |   M	src/shogun/features/StreamingVwFeatures.cpp
| |   M	src/shogun/features/StreamingVwFeatures.h
| |   M	src/shogun/io/StreamingAsciiFile.cpp
| |   M	src/shogun/io/StreamingAsciiFile.h
| |   M	src/shogun/io/StreamingFile.cpp
| |   M	src/shogun/io/StreamingFile.h
| |   M	src/shogun/io/StreamingFileFromFeatures.cpp
| |   M	src/shogun/io/StreamingFileFromFeatures.h
| |   M	src/shogun/io/StreamingFileFromSimpleFeatures.h
| |   M	src/shogun/io/StreamingFileFromSparseFeatures.h
| |   M	src/shogun/io/StreamingFileFromStringFeatures.h
| |   M	src/shogun/io/StreamingVwCacheFile.cpp
| |   M	src/shogun/io/StreamingVwCacheFile.h
| |   M	src/shogun/io/StreamingVwFile.cpp
| |   M	src/shogun/io/StreamingVwFile.h
| |   M	src/shogun/machine/OnlineLinearMachine.cpp
| |   M	src/shogun/machine/OnlineLinearMachine.h
| |   
* | commit 62e6aee40a47102c70fd1473f5f2b16554ee6a4d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 14:57:25 2011 +0400
| | 
| |     Made HLLE parallel
| | 
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| |   
* | commit cb38bbf8d65493ea64365abf0e586a2c775c346a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 14:57:10 2011 +0400
| | 
| |     Some clean for LTSA parallelization
| | 
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| |     
* |   commit 0a080465977519dc412836641d5ea3bed76f8aec
|\ \  Merge: 9f86e64 4560951
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Aug 15 01:05:04 2011 -0700
| | | 
| | |     Merge pull request #296 from alesis/gmm
| | |     
| | |     Multiple fixes (SG*, log-likelihood instead of likelihood), improved docu
| | |    
| * | commit 4560951cce29329ae9708dec6662e0da810314b2
|/ /  Author: Alesis Novik <alesisnov@gmail.com>
| |   Date:   Sun Aug 14 23:02:17 2011 +0100
| |   
| |       Multiple fixes (SG*, log-likelihood instead of likelihood), improved documentation
| |   
| |   M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| |   M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| |   M	src/shogun/clustering/GMM.cpp
| |   M	src/shogun/clustering/GMM.h
| |   M	src/shogun/distributions/Gaussian.cpp
| |   M	src/shogun/distributions/Gaussian.h
| |   M	src/shogun/features/DotFeatures.cpp
| |   M	src/shogun/features/DotFeatures.h
| |   
* | commit 9f86e64d92c947f2d55b5347994be098632cf51d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 04:20:10 2011 +0400
| | 
| |     Added parameters addition to dimensionality reduction algos
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | M	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | M	src/shogun/preprocessor/LaplacianEigenmaps.h
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.h
| |   
* | commit b219442246807f28ade87c10a1a5cb95dc34cf8d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:56:19 2011 +0400
| | 
| |     Made LTSA parallel
| | 
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| |   
* | commit 4c5331cd2f2bf0ba762c14da16102a9c06ea7264
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:55:13 2011 +0400
| | 
| |     Removed unnecessary pthread_exit
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit c02be2d605a6ddddf70c3cc0e0fe5af4605938f0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 03:14:36 2011 +0400
| | 
| |     Added pthread_exit for Isomap and MDS
| | 
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/MultidimensionalScaling.cpp
| |   
* | commit 81cc6a2e9bc14974bc55f7fce5261e4b05cbf0af
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:57:00 2011 +0400
| | 
| |     Made LLE parallel
| | 
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| |   
* | commit 953fa3ae30b31d241bc554cbf9f363f02e9d6b6c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:56:41 2011 +0400
| | 
| |     Got graphical dimreduct examples to work again
| | 
| | M	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| |   
* | commit 5e6a160721c864818c9127b685715f6d062ac84d
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:07:24 2011 +0400
| | 
| |     Fixed Classic/Landmark modular examples
| | 
| | D	examples/undocumented/csharp_modular/preprocessor_classicisomap_modular.cs
| | A	examples/undocumented/csharp_modular/preprocessor_isomap_modular.cs
| | D	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | A	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | D	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | A	examples/undocumented/java_modular/preprocessor_multidimensionalscaling_modular.java
| | D	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | A	examples/undocumented/lua_modular/preprocessor_isomap_modular.lua
| | D	examples/undocumented/python_modular/preprocessor_classicisomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | A	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | D	examples/undocumented/python_modular/preprocessor_landmarkmds_modular.py
| | A	examples/undocumented/python_modular/preprocessor_multidimensionalscaling_modular.py
| | D	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_isomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | D	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | A	examples/undocumented/ruby_modular/preprocessor_multidimensionalscaling_modular.rb
| |   
* | commit cfe4efbf46c4e8c89fed230357c6853a6a0d6d91
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Aug 15 02:00:13 2011 +0400
| | 
| |     United Landmark/Classic MDS and Isomap stuff
| | 
| | M	src/interfaces/modular/Preprocessor.i
| | M	src/interfaces/modular/Preprocessor_includes.i
| | D	src/shogun/preprocessor/ClassicIsomap.h
| | D	src/shogun/preprocessor/ClassicMDS.cpp
| | D	src/shogun/preprocessor/ClassicMDS.h
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/Isomap.h
| | D	src/shogun/preprocessor/LandmarkIsomap.h
| | D	src/shogun/preprocessor/LandmarkMDS.cpp
| | D	src/shogun/preprocessor/LandmarkMDS.h
| | A	src/shogun/preprocessor/MultidimensionalScaling.cpp
| | A	src/shogun/preprocessor/MultidimensionalScaling.h
| | M	src/shogun/preprocessor/Preprocessor.h
| |   
* | commit 4d757d9600c0316082ed812a922020ad4b712f10
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 22:48:05 2011 +0200
| | 
| |     set DOXYGEN_SHOULD_SKIP this when generating documentation
| | 
| | M	src/interfaces/modular/modshogun.doxy
| |   
* | commit fe8cd5cd36607684d14491bf53ab763bfa7c21b4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 21:58:03 2011 +0200
| | 
| |     call CMath::is_finite() instead of CMath::finite()
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit ea26eaa83ec12feb7a80ea8b6f11903351d05b65
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Aug 14 20:21:38 2011 +0200
| | 
| |     use CALLOC instead of malloc and fill_vector
| | 
| | M	src/shogun/mathematics/Math.h
| |   
* | commit 5f776e8b6a379223ad0ae36f39a3ccc8e99c8356
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 14 14:55:34 2011 +0400
| | 
| |     Got PCA to work in the right way again
| | 
| | M	src/shogun/preprocessor/PCA.cpp
| |     
* |   commit cb0a6caca7d4a4baed1ced0cf19f0a3992da39d7
|\ \  Merge: 60e3bad 1fe7294
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Aug 14 03:20:16 2011 -0700
| | | 
| | |     Merge pull request #294 from frx/streaming_vw
| | |     
| | |     VW Class
| | |    
| * | commit 1fe72944e562bcc4affdabc8014a559304c7a552
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 14 09:38:05 2011 +0530
| | | 
| | |     Corrected and documented StreamingSparseFeatures.
| | |     Added an example for OnlineSVMSGD.
| | | 
| | | A	examples/undocumented/libshogun/streaming_onlinesvmsgd.cpp
| | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | M	src/shogun/features/StreamingSparseFeatures.h
| | | M	src/shogun/machine/OnlineLinearMachine.h
| | |    
| * | commit 14946c510b9a2ca67a380f6e25ec11fdf8a50ed5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Aug 14 04:05:42 2011 +0530
| | | 
| | |     Added VowpalWabbit class.
| | | 
| | | M	src/shogun/classifier/vw/VowpalWabbit.cpp
| | | M	src/shogun/classifier/vw/VowpalWabbit.h
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | |    
| * | commit c9a0d164a82f41659ac94d801f5bdd24e8cbd8f3
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Aug 14 03:35:06 2011 +0530
| |   
| |       Incorporated dump regressor in VowpalWabbit.
| |       Added vw_math.
| |   
| |   A	src/shogun/classifier/vw/VowpalWabbit.cpp
| |   A	src/shogun/classifier/vw/VowpalWabbit.h
| |   A	src/shogun/classifier/vw/vw_math.cpp
| |   A	src/shogun/classifier/vw/vw_math.h
| |   M	src/shogun/features/StreamingVwFeatures.h
| |     
* |   commit 60e3badf826634c4bb430d64d865512f72eef4a8
|\ \  Merge: b1d1a6b 5d60b6a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Aug 13 14:42:44 2011 -0700
| | | 
| | |     Merge pull request #293 from frx/streaming_vw
| | |     
| | |     dump_regressor added to VwRegressor
| | |    
| * | commit 5d60b6affb7fe9d44be1c8b62e07d27ce69018b6
| | | Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| | | Date:   Sun Aug 14 03:04:53 2011 +0530
| | | 
| | |     Minor type change in VwRegressor.
| | | 
| | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | |    
| * | commit 94fd8aefa69cfa8535df6698b1125f05d079bd92
| | | Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| | | Date:   Sun Aug 14 02:52:58 2011 +0530
| | | 
| | |     Made VW version part of env.
| | | 
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | | M	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| | |    
| * | commit 3b4d08021c88d971d7ff40b80a172e16e7a59efd
|/ /  Author: Shashwat Lal Das <shashwat@Xan-Kriegor.(none)>
| |   Date:   Sun Aug 14 02:40:53 2011 +0530
| |   
| |       Added dump_regressor to VwRegressor.
| |   
| |   M	src/shogun/classifier/vw/VwEnvironment.cpp
| |   M	src/shogun/classifier/vw/VwEnvironment.h
| |   M	src/shogun/classifier/vw/VwRegressor.cpp
| |   M	src/shogun/classifier/vw/VwRegressor.h
| |   
* | commit b1d1a6b9a6eed84f659ebeb64e657a390c0f8e7b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Aug 14 00:59:16 2011 +0400
| | 
| |     Fixed more warnings (Parameter,Version)
| | 
| | M	src/shogun/base/Parameter.h
| | M	src/shogun/base/Version.h
| |   
* | commit dbf2ab3bdf396e9f49b6269c4401382e7a94b670
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:44:57 2011 +0400
| | 
| |     Got rid of Preprocessor doxygen warnings
| | 
| | M	src/shogun/preprocessor/Preprocessor.h
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | M	src/shogun/preprocessor/SimplePreprocessor.h
| | M	src/shogun/preprocessor/SparsePreprocessor.h
| | M	src/shogun/preprocessor/StringPreprocessor.h
| |   
* | commit e57e521fb5feaa29e526f0f0cc77d90a08ecc950
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:56 2011 +0400
| | 
| |     Improved java svmlight externalization example
| | 
| | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| |   
* | commit 0f67ca81f5663a1efeb84bd932fb9bfda2e60758
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:29 2011 +0400
| | 
| |     Codestyle fix for java externalization routines
| | 
| | M	src/interfaces/modular/SGBase.i
| |   
* | commit 86d2c7f84bb4a725ea64bba04426baa3e3d8d3d4
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 23:02:07 2011 +0400
| | 
| |     Restored Dynarray modular renames
| | 
| | M	src/interfaces/modular/Library.i
| |   
* | commit ad1314a98b0c84ad32e19f0485cfc8c3c182a003
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 20:21:27 2011 +0200
| | 
| |     fix remaining warnings in libshogun
| | 
| | M	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| |   
* | commit aecb8bf91ee41e899782f86318d64001ec741969
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 17:34:50 2011 +0200
| | 
| |     fix crashers in sparse features and svmocas
| | 
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/lib/DataType.h
| |   
* | commit 9350b71665283933bfbddbd16647eb79031636b5
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Aug 13 15:38:27 2011 +0400
| | 
| |     Got java externalization to work
| | 
| | M	src/interfaces/modular/SGBase.i
| |   
* | commit 52fbaf1fa5e3f9a88802706e8effdaa0776f7436
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 07:26:37 2011 +0200
| | 
| |     kill remaining warnings for python_modular
| | 
| | M	src/shogun/classifier/mkl/MKL.h
| | M	src/shogun/classifier/svm/SGDQN.h
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| |   
* | commit c1d50d1d4773efe4fd451a2dc7c491b817d89801
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Aug 13 07:05:29 2011 +0200
| | 
| |     fix compile error when compiling without reference counting
| | 
| | M	src/shogun/base/SGObject.h
| |   
* | commit dd165c51bb07c391e9845dec799e1215c8a3bfd3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Aug 12 22:29:58 2011 +0200
| | 
| |     fix further warning in io
| | 
| | M	src/shogun/io/SerializableXmlReader00.cpp
| |     
* |   commit 850010a854b1b1be32a5974f7899b258589c51c3
|\ \  Merge: 4c34008 cb5c195
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Aug 12 12:25:05 2011 -0700
| | | 
| | |     Merge pull request #292 from gsomix/master
| | |     
| | |     Implemented Hash set and added 'mythical 15 milliseconds' for Fibonacci heap
| | |    
| * | commit cb5c195b58f4fb13596bb849f9a5d1305abd2890
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Fri Aug 12 23:06:05 2011 +0400
| | | 
| | |     Implemented Hash set and added 'mythical 15 milliseconds' for Fibonacci heap
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | | M	src/shogun/lib/FibonacciHeap.h
| | | A	src/shogun/lib/HashSet.cpp
| | | A	src/shogun/lib/HashSet.h
| | |      
| * |   commit ac3d853f253db540d72c970f8cf25569d118f3f8
| |\ \  Merge: 26d1e8b 4c34008
| |/ /  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| |   Date:   Fri Aug 12 23:03:56 2011 +0400
| | |   
| | |       Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |      
* | |   commit 4c340085996eb6ea5902db3f6901f7d505c3b158
|\ \ \  Merge: 0b64595 5865e2a
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 07:42:30 2011 -0700
| | | | 
| | | |     Merge pull request #291 from frx/streaming_vw
| | | |     
| | | |     Documented and renamed a few functions in parser/ring for readability.
| | | |     
| * | | commit 5865e2a2f469d13aabdb1d0a9bf2279bc0c193c1
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Aug 12 17:26:13 2011 +0530
| | | | 
| | | |     Documented and renamed a few functions in parser/ring for readability.
| | | |     Added set_free_vectors_on_destroy to ParseBuffer to handle cases from StreamingFileFrom_Features.
| | | | 
| | | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | | M	src/shogun/io/InputParser.h
| | | | M	src/shogun/io/ParseBuffer.h
| | | |       
* | | |   commit 0b645950b322ed20857a196a975e0aa40d5441ad
|\ \ \ \  Merge: 99d18cc bf6e7e1
| | |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Aug 12 07:41:18 2011 -0700
| | | |   
| | | |       Merge pull request #290 from sploving/master
| | | |       
| | | |       add ruby and csharp docs
| | | |     
| * | | commit bf6e7e1fdfe406b1c61a705204caae72d83208bc
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Aug 12 16:43:30 2011 +0800
| | | | 
| | | |     add ruby and csharp docs
| | | | 
| | | | M	doc/pages/Installation.mainpage
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 96778ed76c0d27a723c3ab3a09dd2e2614ab9924
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Aug 12 16:42:50 2011 +0800
| | | | 
| | | |     add classifier_libsvm_minimal_modular.cs
| | | | 
| | | | A	examples/undocumented/csharp_modular/classifier_libsvm_minimal_modular.cs
| | | |     
* | | | commit 99d18ccc2634b9062ef183a18dc5267c2ef03786
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 16:37:04 2011 +0200
| | | | 
| | | |     remove unused 'end' variable
| | | | 
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | |     
* | | | commit fc12543ea57376ab67f51e113af530bf03dc1577
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Aug 12 16:18:15 2011 +0200
| | | | 
| | | |     fix remaining warnigns in classifier
| | | | 
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | |     
* | | | commit 9778993cd0a56537731befd02fbbdac7c2e3b8ce
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| |   Date:   Fri Aug 12 16:49:14 2011 +0400
| | |   
| | |       Fixed wrong deletion of SGNDArray<uint16_t>
| | |   
| | |   M	src/interfaces/modular/Library.i
| | |    
* | | commit cfab78295e85635c866e7361e6649ac71737b4bb
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Aug 12 16:34:38 2011 +0400
| | | 
| | |     Added write/readObject for java serialization, added ignores and removed unnecessary modular classes
| | | 
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/Library.i
| | | M	src/interfaces/modular/SGBase.i
| | | M	src/interfaces/modular/modshogun.i
| | | A	src/interfaces/modular/modshogun_ignores.i
| | |      
* | |   commit dbfda65ec87317bf1fee138f97407a4427544375
|\ \ \  Merge: 7594a76 a850d4f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Aug 11 21:53:29 2011 -0700
| | | | 
| | | |     Merge pull request #288 from frx/streaming_vw
| | | |     
| | | |     Added StreamingVwFeatures.
| | | |     
| * | | commit a850d4f5f1e7338a304355687adf27fa23513f14
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Aug 12 02:16:08 2011 +0530
| | | | 
| | | |     Switched to use of substring helpers for parsing streaming dense vectors.
| | | | 
| | | | M	src/shogun/io/AsciiFile.cpp
| | | | M	src/shogun/io/AsciiFile.h
| | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | M	src/shogun/io/StreamingAsciiFile.h
| | | |     
| * | | commit c4ef195ef3b49aa0a9e552bba592c8155c1f8eb6
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 23:07:19 2011 +0530
| | | | 
| | | |     Added some initializers for StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/StreamingVwFeatures.cpp
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | |     
| * | | commit 2770350c42535d6ad1489c6e55bf13becdf0f700
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 23:01:20 2011 +0530
| | | | 
| | | |     Added missing doc in StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/StreamingVwFeatures.h
| | | |     
| * | | commit d60003857e52bfb31dbcdc6a534916a68c0b8e68
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Aug 11 17:45:13 2011 +0530
| | | | 
| | | |     Added StreamingVwFeatures.
| | | | 
| | | | M	src/shogun/features/FeatureTypes.h
| | | | M	src/shogun/features/Features.cpp
| | | | A	src/shogun/features/StreamingVwFeatures.cpp
| | | | A	src/shogun/features/StreamingVwFeatures.h
| | | | M	src/shogun/io/InputParser.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | |       
* | | |   commit 7594a768cb7bc33417f90fa53c7b65907ee1faed
|\ \ \ \  Merge: 50d60be fbcb1ec
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| / /   Date:   Thu Aug 11 21:34:53 2011 -0700
| |/ /    
| | |         Merge pull request #289 from sploving/master
| | |         
| | |         ruby stringlist can work now
| | |    
| * | commit fbcb1ec4f37f3fa4505bd8846174201690a317f0
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Aug 12 11:14:33 2011 +0800
| | | 
| | |     fix ruby stringlist bug, add result=arr statement
| | | 
| | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | |    
| * | commit f97132ef8c622b65d3a4d4ee513db10791c51ff3
|/ /  Author: Baozeng Ding <sploving1@gmail.com>
| |   Date:   Fri Aug 12 10:53:27 2011 +0800
| |   
| |       fix ruby stringlist bug by removing SGFREE(str)
| |   
| |   M	src/interfaces/ruby_modular/swig_typemaps.i
| |   
* | commit 50d60be75904d7b230e4a45ee044d862949b93fe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:38:46 2011 +0200
| | 
| |     use SG_S* function for static function
| | 
| | M	src/shogun/io/SerializableHdf5File.cpp
| |   
* | commit 7fb2ee0e47822c2cda2f890f44746ad0650fe750
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:33:53 2011 +0200
| | 
| |     fix warnings in classifiers
| | 
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| |   
* | commit 081405b98c89fdfe1f1048e73f25c0b355732b03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:25:33 2011 +0200
| | 
| |     add SG_NOTIMPLEMENTED to fix switch CT_NDARRAY warning
| | 
| | M	src/shogun/io/SerializableAsciiFile.cpp
| | M	src/shogun/io/SerializableAsciiReader00.cpp
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| |   
* | commit b829fcc429e4b3efd521643fb972fd401b17cae8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Aug 11 20:07:54 2011 +0200
| | 
| |     initialize source and dest with NULL to fix uninited warnings
| | 
| | M	src/shogun/base/Parameter.cpp
| |     
* |   commit 7dcf548907fe8c7e08d9cd1d4e268f9edced4b5e
|\ \  Merge: d6b9d89 42f532d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 06:05:29 2011 -0700
| | | 
| | |     Merge pull request #287 from karlnapf/master
| | |     
| | |     ParameterMap is now not a CSGObject anymore
| | |    
| * | commit 42f532dc130b3ae4151ed8d89b364ba29a2efaef
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:16:30 2011 +0200
| | | 
| | |     applied changes of ParameterMap
| | | 
| | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | |    
| * | commit 73e5515a839fdf69e13ddc4afa929238d8e5561b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:16:08 2011 +0200
| | | 
| | |     parameter map will be a variable of CSGObject, so must not be a CSGObject itself. switched to manual memory handling and removed inheritance.
| | | 
| | | M	src/shogun/base/ParameterMap.cpp
| | | M	src/shogun/base/ParameterMap.h
| | |    
| * | commit f95d3a0cc89971528a8c59731f4db144d8dc502d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Aug 11 14:15:19 2011 +0200
| | | 
| | |     made get_array const
| | | 
| | | M	src/shogun/lib/DynamicArray.h
| | | M	src/shogun/lib/DynamicObjectArray.h
| | |    
| * | commit 4be098c72fc1725e9f979e0591ab8f9232d984f8
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Aug 11 14:15:07 2011 +0200
| |   
| |       made get_array const
| |   
| |   M	src/shogun/base/DynArray.h
| |     
* |   commit d6b9d892df4eb7d7b3fb427c7e98bfd474bde6e3
|\ \  Merge: ec41ad2 0367d91
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 04:41:12 2011 -0700
| | | 
| | |     Merge pull request #286 from sploving/master
| | |     
| | |     support stringlist for csharp and add some examples
| | |    
| * | commit 0367d916d5e263d294325c74144e5bd7a20a4a57
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Aug 11 19:31:46 2011 +0800
| | | 
| | |     add some csharp examples
| | | 
| | | A	examples/undocumented/csharp_modular/features_string_char_modular.cs
| | | A	examples/undocumented/csharp_modular/kernel_linear_word_modular.cs
| | | A	examples/undocumented/csharp_modular/kernel_weighted_degree_string_modular.cs
| | |    
| * | commit bc6cd6c5e116a433782a10829428977671bc46e5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Aug 11 19:26:45 2011 +0800
| | | 
| | |     support stringlist for csharp
| | | 
| | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | |    
* | | commit ec41ad2f4f028779c05e5d9557f73d185ba4341f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 13:13:26 2011 +0200
| | | 
| | |     fix further compiler warnings
| | | 
| | | M	src/shogun/classifier/svm/ssl.cpp
| | | M	src/shogun/io/StreamingFile.cpp
| | | M	src/shogun/lib/DataType.h
| | |    
* | | commit 2042a6dd393ba1311f8a1e6e70951473d37e5293
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:07:54 2011 +0200
| | | 
| | |     fix remaining warnings in parameter
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 6a23b056f30bd7774e04f547c9bc5a8e345a12a8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:05:36 2011 +0200
| | | 
| | |     fix warnign in DynProg about unused variable
| | | 
| | | M	src/shogun/structure/DynProg.cpp
| | |    
* | | commit 3adb67d077b4883945d0e3432855f49af6a90549
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 07:04:06 2011 +0200
| | | 
| | |     use SG_SNOTIMPLEMENTED to fix compile error in non-SGObject derived class
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 1baaf47293dcf8904a3ae0345d5029508f1daee1
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 00:35:27 2011 +0200
| | | 
| | |     fix case not handled in switch
| | | 
| | | M	src/shogun/base/Parameter.cpp
| | |    
* | | commit 1537fd1b8f0c48b7a6eac0050699a8ac0dbb2729
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Aug 11 00:35:01 2011 +0200
| | | 
| | |     fix further unused variable warnings
| | | 
| | | M	src/shogun/regression/svr/SVRLight.cpp
| | |      
* | |   commit 7cca7ff2b95e067797f7c89ddcd955c1f7761190
|\ \ \  Merge: 0796878 c73dbc8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 13:49:50 2011 -0700
| | | | 
| | | |     Merge pull request #285 from frx/streaming_vw
| | | |     
| | | |     Added StreamingVwCacheFile.
| | | |     
| * | | commit c73dbc8b7347e9f42a0e5ba5fe484ecd197055ed
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Aug 11 02:14:03 2011 +0530
| | |   
| | |       Added StreamingVwCacheFile.
| | |   
| | |   A	src/shogun/io/StreamingVwCacheFile.cpp
| | |   A	src/shogun/io/StreamingVwCacheFile.h
| | |    
* | | commit 079687806c814d0de310af8bce27e15b022afdc3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 22:39:39 2011 +0200
| | | 
| | |     fix further uninited warnings
| | | 
| | | M	src/shogun/distributions/HMM.cpp
| | | M	src/shogun/features/StringFeatures.h
| | | M	src/shogun/io/AsciiFile.cpp
| | | M	src/shogun/ui/GUIKernel.cpp
| | |      
* | |   commit 4c44f6bbc5f7a4b1b0dfd5ec74fd08e655550896
|\ \ \  Merge: 4eb1ae9 47bedcc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 22:38:28 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 47bedccb72adcc7c6869253d3fa98e782aa5886c
| |\ \ \  Merge: 81af90d bc3f108
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 10 13:08:52 2011 -0700
| | | | | 
| | | | |     Merge pull request #284 from frx/streaming_vw
| | | | |     
| | | | |     Added StreamingVwFile.
| | | | |      
| | * | | commit bc3f1085db65c22882289f10368bfcc93f93d913
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:36:31 2011 +0530
| | | | | 
| | | | |     Improved another switch-case block in VwParser.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwParser.cpp
| | | | |      
| | * | | commit c59c21fb1bcb67a5c1f78471316c1b062b757097
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:33:28 2011 +0530
| | | | | 
| | | | |     Made the parser type switch statement handle cases better.
| | | | | 
| | | | | M	src/shogun/io/StreamingVwFile.cpp
| | | | |      
| | * | | commit 057b70bc527af2e40801c237f357a41c11481598
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 11 01:27:27 2011 +0530
| | | | | 
| | | | |     Modified StreamingFile to include VwExample read functions.
| | | | | 
| | | | | M	src/shogun/io/StreamingFile.cpp
| | | | | M	src/shogun/io/StreamingFile.h
| | | | |      
| | * | | commit cfb3f072219ed1917522df282a620b99507a8c89
| |/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | |   Date:   Thu Aug 11 01:21:29 2011 +0530
| | | |   
| | | |       Added StreamingVwFile.
| | | |   
| | | |   A	src/shogun/io/StreamingVwFile.cpp
| | | |   A	src/shogun/io/StreamingVwFile.h
| | | |     
* | | | commit 4eb1ae9fab104d9cf0185f732787e6acde456111
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Aug 10 22:37:04 2011 +0200
| | |   
| | |       use unions to fix warnings w/ strict-aliasing on
| | |   
| | |   M	src/shogun/mathematics/Math.h
| | |    
* | | commit 81af90d3faefd1af7fbbf6418b328948750cb35f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 21:57:43 2011 +0200
| | | 
| | |     fix another g++ uninited warning
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | |    
* | | commit 072dabc15b4e48be1a8680d9707a3ac3c4d4e1c3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 21:50:54 2011 +0200
| | | 
| | |     fix uninitialized variable warning
| | | 
| | | M	src/shogun/lib/DataType.cpp
| | |      
* | |   commit b75a9715b8564fd1dfb4c806df8fe8965fcb437c
|\ \ \  Merge: 70476d8 960471e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 11:57:06 2011 -0700
| | | | 
| | | |     Merge pull request #283 from frx/streaming_vw
| | | |     
| | | |     Replaced size_t with uint32_t in hash func typedef.
| | | |     
| * | | commit 960471e52d2c1e571f67410fbc588143db7cad60
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Aug 11 00:11:35 2011 +0530
| | |   
| | |       Replaced size_t with uint32_t in hash func typedef.
| | |   
| | |   M	src/shogun/classifier/vw/vw_common.h
| | |    
* | | commit 70476d87dc605f41ba59b3447fbec96d23743de5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 20:31:57 2011 +0200
| | | 
| | |     Revert "remove lib/versionstring.h on distclean"
| | |     
| | |     This reverts commit c8e5d1c767cd3f08adacdc84e204ed116e02d2ca.
| | |     
| | |     Releases contain lib/versionstring.h and this file is just once auto
| | |     generated before releases. So removing it in distclean will require to
| | |     unpack the tarball again -> not a good idea.
| | | 
| | | M	src/Makefile
| | |      
* | |   commit 10e769906f4d25e2d38e803a01fcc3424439285b
|\ \ \  Merge: c8e5d1c 6d51367
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 10 20:24:19 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 6d513678d3371aed9f6c4c24c45a1a5e7ba01e1a
| |\ \ \  Merge: 0e23718 0fbb00c
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 10 11:20:06 2011 -0700
| | | | | 
| | | | |     Merge pull request #282 from frx/streaming_vw
| | | | |     
| | | | |     Added VW parser class.
| | | | |      
| | * | | commit 0fbb00cc965be6ff0c2f5bd541ae31485fc36262
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Aug 10 21:49:38 2011 +0530
| | | | | 
| | | | |     Conversion to SG_FREE in VW files.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwParser.cpp
| | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | |      
| | * | | commit 39ce6ac0de346ed0bb42e30e5cf7c19601a42684
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Aug 10 21:00:46 2011 +0530
| | | | | 
| | | | |     Added VW parser class.
| | | | | 
| | | | | A	src/shogun/classifier/vw/VwParser.cpp
| | | | | A	src/shogun/classifier/vw/VwParser.h
| | | | |        
| * | | |   commit 0e23718af106914b20d4947d6232badd50a6f399
| |\ \ \ \  Merge: ded0001 0be1f49
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Wed Aug 10 11:18:23 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #281 from karlnapf/master
| | | | | |     
| | | | | |     serialization example
| | | | | |       
| | * | | | commit 0be1f49d3e04253e41e6fa444613924feb12c9fb
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 10 15:53:58 2011 +0200
| | | | | | 
| | | | | |     added serialization example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| | * | | | commit 495e76b62c701027696d545103a10a0ff19c2d2f
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 10 15:52:20 2011 +0200
| | | | | | 
| | | | | |     added serialization example
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/serialization_ascii.cpp
| | | | | |         
| * | | | |   commit ded0001a1087b691190a197f2aadc2c5b33912e6
| |\ \ \ \ \  Merge: b80677d 3bb29e2
| | | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | |   Date:   Wed Aug 10 05:14:53 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #280 from frx/streaming_vw
| | | | | |       
| | | | | |       Added VW native cache read/write classes.
| | | | | |       
| | * | | | commit 3bb29e2ee79f1382986ad5775e2636f39a299edc
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Wed Aug 10 17:06:06 2011 +0530
| | | | | | 
| | | | | |     Made invsqrt inline.
| | | | | | 
| | | | | | M	src/shogun/mathematics/Math.h
| | | | | |       
| | * | | | commit 46b44a01b8b0f5237dfc036c2fbf729109e6caf2
| |/ / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | |   Date:   Wed Aug 10 16:47:36 2011 +0530
| | | | |   
| | | | |       Added VW native cache read/write classes.
| | | | |       Modified v_array to use shogun functions.
| | | | |   
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheReader.cpp
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheReader.h
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheWriter.cpp
| | | | |   A	src/shogun/classifier/vw/cache/VwNativeCacheWriter.h
| | | | |   M	src/shogun/lib/v_array.h
| | | | |      
* | | | | commit c8e5d1c767cd3f08adacdc84e204ed116e02d2ca
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Aug 10 20:24:00 2011 +0200
| | | |   
| | | |       remove lib/versionstring.h on distclean
| | | |   
| | | |   M	src/Makefile
| | | |       
* | | |   commit b80677d093c429d87fb7fbd16a2e25f3a7293702
|\ \ \ \  Merge: a861dd4 ab6daeb
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Aug 10 03:56:12 2011 -0700
| | | |   
| | | |       Merge pull request #279 from frx/streaming_vw
| | | |       
| | | |       Added SG_ADD for VW learner base class.
| | | |     
| * | | commit ab6daeb4865912ddc40d37649a2e0f26e2f98376
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Aug 10 16:22:06 2011 +0530
| | |   
| | |       Added SG_ADD for VW learner base class.
| | |   
| | |   M	src/shogun/classifier/vw/VwLearner.h
| | |    
* | | commit a861dd4953659cb3002596367b0e19aee3ceb868
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Aug 10 07:50:32 2011 +0200
| | | 
| | |     remove illegal -Wimplicit from C++ compile flags
| | | 
| | | M	src/configure
| | |      
* | |   commit 7d75106d6619e13ecb779d869fe272633200613a
|\ \ \  Merge: 9f7d9d7 ded1eb0
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Aug 9 22:49:18 2011 -0700
| | |   
| | |       Merge pull request #278 from sploving/master
| | |       
| | |       add some csharp examples
| | |    
| * | commit ded1eb0bc5b3742c7eb60b9c064260e30a49ff1b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Aug 10 13:06:08 2011 +0800
| | | 
| | |     add some csharp examples
| | | 
| | | A	examples/undocumented/csharp_modular/classifier_averaged_perceptron_modular.cs
| | | A	examples/undocumented/csharp_modular/distance_braycurtis_modular.cs
| | | A	examples/undocumented/csharp_modular/evaluation_contingencytableevaluation_modular.cs
| | | A	examples/undocumented/csharp_modular/features_simple_real_modular.cs
| | | A	examples/undocumented/csharp_modular/preprocessor_classicisomap_modular.cs
| | | A	examples/undocumented/csharp_modular/regression_krr_modular.cs
| | |      
* | |   commit 9f7d9d7e54fc2e8b8d0bdebee11574950c99ea26
|\ \ \  Merge: 259c1ec df09823
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 9 21:36:38 2011 -0700
| | | | 
| | | |     Merge pull request #277 from frx/streaming_vw
| | | |     
| | | |     VW learners
| | | |     
| * | | commit df098234396b7e37b030cc3e9baab6e8474a1a07
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 06:30:10 2011 +0530
| | | | 
| | | |     Corrected types in remaining VW code.
| | | | 
| | | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheReader.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | | M	src/shogun/classifier/vw/cache/VwCacheWriter.cpp
| | | | M	src/shogun/classifier/vw/cache/VwCacheWriter.h
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | | | M	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| | | |     
| * | | commit e7c47d410cc3a2f83beadd85380a04352d350615
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 02:53:07 2011 +0530
| | | | 
| | | |     Added non adaptive learner for VW.
| | | | 
| | | | A	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.cpp
| | | | A	src/shogun/classifier/vw/learners/VwNonAdaptiveLearner.h
| | | |     
| * | | commit 2da6cdc9c479563afd2d5be54745164e9ab0f5d5
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 00:06:02 2011 +0530
| | | | 
| | | |     float type fixed at one more location.
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit e0855cede5636dddd81b4658441d234abda1d0a9
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Aug 10 00:02:51 2011 +0530
| | | | 
| | | |     Changed type from float to float32_t for invsqrt.
| | | | 
| | | | M	src/shogun/classifier/vw/VwLearner.h
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | | | M	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 73ed3455d1afbc8f8a77daa624628024b4213058
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Tue Aug 9 16:37:35 2011 +0530
| | |   
| | |       Added VW Learner base class and adaptive learner implementation.
| | |       Added invsqrt to Math.h
| | |   
| | |   A	src/shogun/classifier/vw/VwLearner.h
| | |   A	src/shogun/classifier/vw/learners/VwAdaptiveLearner.cpp
| | |   A	src/shogun/classifier/vw/learners/VwAdaptiveLearner.h
| | |   M	src/shogun/mathematics/Math.h
| | |      
* | |   commit 259c1ec81b9bc3f480279b8c73153a622a33157d
|\ \ \  Merge: 4a52712 0a8043f
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Aug 9 11:13:52 2011 -0700
| | |   
| | |       Merge pull request #276 from sploving/master
| | |       
| | |       add Load.cs and one kernel example
| | |    
| * | commit 0a8043fbbde22de40a7ce905289d4e45235ec15b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:50:48 2011 +0800
| | | 
| | |     add kernel_gaussian_modular.cs example
| | | 
| | | A	examples/undocumented/csharp_modular/kernel_gaussian_modular.cs
| | |    
| * | commit 70c511389b126837c14bf43b382967df2229cc90
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:50:10 2011 +0800
| | | 
| | |     make check.sh work
| | | 
| | | M	examples/undocumented/csharp_modular/check.sh
| | |    
| * | commit c9982e980bceb3386d08a3fab43a065a76603d06
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Aug 9 16:49:47 2011 +0800
| | | 
| | |     add csharp example file, Load.cs, which read data from files
| | | 
| | | A	examples/undocumented/csharp_modular/Load.cs
| | |      
* | |   commit 4a52712eb9c78222a52d2e76de84b64491f57c6e
|\ \ \  Merge: f0ded6a aabcea9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 9 11:12:55 2011 -0700
| | | | 
| | | |     Merge pull request #272 from karlnapf/master
| | | |     
| | | |     Initial Parameter map implementation
| | | |     
| * | | commit aabcea9850d7dccea61e841e26e81f5965008109
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:35:16 2011 +0200
| | | | 
| | | |     removed old example
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| * | | commit 2a5fe6bad37c581d7ff35562d13ffe59de3acc3b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:30:06 2011 +0200
| | | | 
| | | |     applied changes in parameter map to example
| | | | 
| | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | |     
| * | | commit 3919c8b15e86ad4f3bf7ec8b5b033b53f7f68789
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:29:30 2011 +0200
| | | | 
| | | |     -base constructor calls
| | | |     -array is now kept sorted, get is done via binary search, added finalize method
| | | | 
| | | | M	src/shogun/base/ParameterMap.cpp
| | | | M	src/shogun/base/ParameterMap.h
| | | |     
| * | | commit 3dfb69d61c8cb7e4777e19afc87e9773f0a1741d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:28:53 2011 +0200
| | | | 
| | | |     -removed some unneccessary methods
| | | |     -added get_array()
| | | |     -spelling mistakes in documentation
| | | | 
| | | | M	src/shogun/lib/DynamicObjectArray.h
| | | |     
| * | | commit a6ef21752ed0fc94ebdc9d2b67d4ee8722d6f2f4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 16:28:20 2011 +0200
| | | | 
| | | |     added qsort and binary search for arrays of pointers
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit daa60dc536f5f43aef3addedaaab34418a6d3322
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 12:41:00 2011 +0200
| | | | 
| | | |     added parameter version magic
| | | | 
| | | | M	src/.version.sh
| | | |     
| * | | commit 1f87722a4a01826d41897251e6b3e8e5cfb8993b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 9 12:40:48 2011 +0200
| | | | 
| | | |     -added kernel
| | | |     -added parameter version info (needed by .version.sh script for parameter version)
| | | | 
| | | | M	src/NEWS
| | | |     
| * | | commit c0f50b4b5173b48618bdd66e1aa2f2958a887d34
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 19:17:30 2011 +0200
| | | | 
| | | |     more work towards saving/loading parameter version
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | |     
| * | | commit b5d1da61535b0a3fcc083806427132a3a9b1842a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 16:52:47 2011 +0200
| | | | 
| | | |     VERSION_PARAMETER is now an integer
| | | | 
| | | | M	src/.version.sh
| | | |     
| * | | commit e552ef2f00f5904adfb4cd64925d495f3cebff59
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Aug 8 16:51:20 2011 +0200
| | | | 
| | | |     added parameter version
| | | | 
| | | | M	src/.version.sh
| | | |       
| * | |   commit 5e580c0ac07361cfe57f53fbbe3b731c1d76a7dd
| |\ \ \  Merge: 16f81e5 e484bd2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 8 16:36:34 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | |        
| | * | |   commit e484bd2d888de2f53b644747818f76fc54fa0a09
| | |\ \ \  Merge: c7ea005 0db0870
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:51:50 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | | |     
| | | | | |     Conflicts:
| | | | | |     	examples/undocumented/libshogun/Makefile
| | | | | |       
| | | * | | commit 0db08709aa89d6c77dce437cabc318e1e3144b5e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| | | * | | commit de4b523c6ffc3b2eb211b0d3f1b2fa4fbb7568b8
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | | * | | commit bd802e7eeaafaf641df28d027e5a27c4367d9b70
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | A	src/shogun/lib/StringMap.cpp
| | | | | | A	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit c7ea005dd4d7db5180019ca63f4681af417f6742
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:35:36 2011 +0200
| | | | | | 
| | | | | |     added parameter map example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| | * | | | commit 71c76c242524cc0ec3dd15d7cac600957c36454d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:34:38 2011 +0200
| | | | | | 
| | | | | |     added type information to parameter map and applied changes to example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | M	src/shogun/base/ParameterMap.cpp
| | | | | | M	src/shogun/base/ParameterMap.h
| | | | | |       
| | * | | | commit 48e1b761e71cec302942dde0b7ec06e582899849
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:18:09 2011 +0200
| | | | | | 
| | | | | |     added CParameterMap class and an example how to use it
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | A	src/shogun/base/ParameterMap.cpp
| | | | | | A	src/shogun/base/ParameterMap.h
| | | | | |       
| | * | | | commit 62565978914947e43fee2c48f42226605ecb9c7e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:17:31 2011 +0200
| | | | | | 
| | | | | |     removed file
| | | | | | 
| | | | | | D	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | * | | | commit c2ffb6a7703dcc660863b88183daf836489c1303
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Sat Aug 6 16:42:10 2011 +0200
| | | | | | 
| | | | | |     removed StringMap file
| | | | | | 
| | | | | | D	src/shogun/lib/StringMap.cpp
| | | | | | D	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit 6d733fd06d4290ef2bac186b99b2f25ec70d6f03
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| | * | | | commit 8c0d140eb2b0e365e96df7fde074446e1f0514a0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| | * | | | commit a3894fb60bc6c75bbbf71c22991011eb1830c7b4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | A	src/shogun/lib/StringMap.cpp
| | | | | | A	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit 16f81e58c9f3217db557f1f362430dc9c43dbef4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 16:21:47 2011 +0200
| | | | | | 
| | | | | |     added version parameter (is also saved automatically)
| | | | | | 
| | | | | | M	src/shogun/base/SGObject.cpp
| | | | | | M	src/shogun/base/Version.cpp
| | | | | | M	src/shogun/base/Version.h
| | | | | |       
| * | | | | commit aff587f2c190086082c4568ad350d7429549000d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:35:36 2011 +0200
| | | | | | 
| | | | | |     added parameter map example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| * | | | | commit d6f12055d738bbc141ea54a9dbf7514e6d84984a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 13:34:38 2011 +0200
| | | | | | 
| | | | | |     added type information to parameter map and applied changes to example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | M	src/shogun/base/ParameterMap.cpp
| | | | | | M	src/shogun/base/ParameterMap.h
| | | | | |       
| * | | | | commit ce411f7c50f793fad97555d0d0d7bf5d1a338b10
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:18:09 2011 +0200
| | | | | | 
| | | | | |     added CParameterMap class and an example how to use it
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/base_parameter_map.cpp
| | | | | | A	src/shogun/base/ParameterMap.cpp
| | | | | | A	src/shogun/base/ParameterMap.h
| | | | | |       
| * | | | | commit a7e076fea736da2c5f7e5122d846a9cdc68d4874
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Aug 8 11:17:31 2011 +0200
| | | | | | 
| | | | | |     removed file
| | | | | | 
| | | | | | D	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| * | | | | commit 89ca0a11a48baa177996a0c6ced17f930dc17db8
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | | | 
| | | | | |     added stringmap implementation
| | | | | | 
| | | | | | D	src/shogun/lib/StringMap.cpp
| | | | | | D	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit 16c813f9bde9b66ddd70931bdf51b132f1cb4b85
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:34:21 2011 +0200
| | | | | | 
| | | | | |     added documentation
| | | | | | 
| | | | | | M	src/shogun/lib/StringMap.h
| | | | | |       
| * | | | | commit b7f378c854b3a62de9e6229d4d72544177b7bf21
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 17:27:40 2011 +0200
| | | | | | 
| | | | | |     added stringmap example/test
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/library_stringmap.cpp
| | | | | |       
| * | | | | commit 7c2d8653ae847fedefc9c25bcdaa01c5bc835832
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Fri Aug 5 17:27:18 2011 +0200
| | | | |   
| | | | |       added stringmap implementation
| | | | |   
| | | | |   A	src/shogun/lib/StringMap.cpp
| | | | |   A	src/shogun/lib/StringMap.h
| | | | |        
* | | | |   commit f0ded6af55dc347aa86b3caf0b2f30c155cea8cd
|\ \ \ \ \  Merge: c5d48a9 b71e4f8
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Aug 9 03:31:29 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #273 from frx/streaming_vw
| | | | | |     
| | | | | |     Added VW hash functions.
| | | | | |       
| * | | | | commit b71e4f8baa42b03b6ced2d9104bd2ea78a6e3135
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 05:13:49 2011 +0530
| | | | | | 
| | | | | |     Added vw cache read/write base classes.
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheReader.cpp
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheReader.h
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheWriter.cpp
| | | | | | A	src/shogun/classifier/vw/cache/VwCacheWriter.h
| | | | | |       
| * | | | | commit 80506fa5ba3c492649d6a76207dcfd97384e530d
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:19:38 2011 +0530
| | | | | | 
| | | | | |     Added hash_base to vw_common.h
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | |       
| * | | | | commit 58abe28a681a2854e5aab5b1ce62fdd9bc10634a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:06:36 2011 +0530
| | | | | | 
| | | | | |     Added missing header file in Hash.cpp
| | | | | | 
| | | | | | M	src/shogun/lib/Hash.cpp
| | | | | |       
| * | | | | commit ff557318dd2666a9ebc711fe433c2d86807167f8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 03:00:23 2011 +0530
| | | | | | 
| | | | | |     Moved hashstring to lib/Hash
| | | | | | 
| | | | | | D	src/shogun/classifier/vw/hash.cpp
| | | | | | D	src/shogun/classifier/vw/hash.h
| | | | | | M	src/shogun/lib/Hash.cpp
| | | | | | M	src/shogun/lib/Hash.h
| | | | | |       
| * | | | | commit 55cc4276eaa514959f2eb78a7b106d1a80660dab
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Aug 9 01:50:33 2011 +0530
| | | | | | 
| | | | | |     Added VW hash functions.
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/hash.cpp
| | | | | | A	src/shogun/classifier/vw/hash.h
| | | | | |         
* | | | | |   commit c5d48a935b3403dcfe55b90688c430389f799f95
|\ \ \ \ \ \  Merge: 63e6105 fca3318
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Tue Aug 9 02:56:00 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #274 from serialhex/master
| | | | | |       
| | | | | |       auto translated python -> ruby examples
| | | | | |       
| * | | | | commit fca33186dab4d022324cdf9198fd5a871d11bd7e
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Tue Aug 9 00:41:04 2011 -0400
| | | | | | 
| | | | | |     last commit didn't work too well. most of the examples fail, but that is to be expected.
| | | | | |     need to fix & get the examples running right... fun!
| | | | | | 
| | | | | | M	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/trancekoder.rb
| | | | | |       
| * | | | | commit e81612c98c7b425016d76926200044341ec00575
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Mon Aug 8 23:54:22 2011 -0400
| | | | | | 
| | | | | |     used an automated program to translate shogun examples in python to ruby.
| | | | | |     most of them work, but may need to be cleaned up & prettified.
| | | | | |     that is stage 2...
| | | | | | 
| | | | | | A	examples/undocumented/ruby_modular/classifier_averaged_perceptron_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_custom_kernel_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_domainadaptationsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gaussiannaivebayes_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gmnpsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_gpbtsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_knn_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_larank_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_lda_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_liblinear_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvmmulticlass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_libsvmoneclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_mpdsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_perceptron_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_subgradientsvm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_batch_linadd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_linear_term_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmlin_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmocas_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/classifier_svmsgd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_gmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_hierarchical_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/clustering_kmeans_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_braycurtis_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_canberra_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_canberraword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_chebyshew_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_chisquare_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_cosine_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_euclidian_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_geodesic_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_hammingword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_jensen_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_manhatten_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_manhattenword_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_minkowski_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_normsquared_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_sparseeuclidean_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distance_tanimoto_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_histogram_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_hmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_linearhmm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/distribution_ppwm_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_contingencytableevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_meansquarederror_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_multiclassaccuracy_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_prcevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/evaluation_rocevaluation_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_io_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_read_svmlight_format_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_byte_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_longint_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_simple_real_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_snp_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_sparse_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_char_compressed_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_char_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_file_char_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_file_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_hashed_wd_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_sliding_window_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_ulong_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/features_string_word_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_anova_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_auc_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_cauchy_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_chi2_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_circular_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_combined_custom_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_combined_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_const_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_custom_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_diag_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_distance_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_distantsegments_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_exponential_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_fisher_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_fixed_degree_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_gaussian_shift_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_histogram_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_inversemultiquadric_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_io_modular.rb
| | | | | | M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_linear_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_local_alignment_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_locality_improved_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_log_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_match_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_multiquadric_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_oligo_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_match_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_match_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_power_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_rationalquadratic_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_salzberg_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sigmoid_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_simple_locality_improved_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_gaussian_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_sparse_poly_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_spherical_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_spline_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_top_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_tstudent_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_wave_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_wavelet_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_comm_word_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_degree_position_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/kernel_weighted_degree_string_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/library_fisher2x3_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/mkl_binclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/mkl_multiclass_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/modelselection_grid_search_linear_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/modelselection_parameter_tree_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_classicisomap_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_classicmds_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_hessianlocallylinearembedding_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_kernelpcacut_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_landmarkisomap_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_landmarkmds_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_laplacianeigenmaps_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_locallylinearembedding_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_localtangentspacealignment_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_logplusone_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_normone_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_pca_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_prunevarsubmean_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_randomfouriergausspreproc_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_sortulongstring_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/preprocessor_sortwordstring_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_krr_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_libsvr_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/regression_svrlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_complex_example.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_matrix_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/serialization_svmlight_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/shogun_helpers.rb
| | | | | | A	examples/undocumented/ruby_modular/structure_dynprog_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/tests_check_commwordkernel_memleak_modular.rb
| | | | | | A	examples/undocumented/ruby_modular/trancekoder.rb
| | | | | |       
| * | | | | commit 382c407f3f94b1c0d24322c299f6214ca3fb58ea
|/ / / / /  Author: Justin Patera <serialhex@gmail.com>
| | | | |   Date:   Sun Aug 7 18:26:23 2011 -0400
| | | | |   
| | | | |       changed 'print' to 'puts' for more idiomatic & nicer-looking ruby
| | | | |   
| | | | |   M	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | |   M	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| | | | |        
| | | | *   commit 26d1e8bef53ef1099c94300e50714d041721271e
| | | | |\  Merge: 82733a7 63e6105
| |_|_|_|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| | | |   Date:   Tue Aug 9 13:05:11 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | | | |      
* | | | | commit 63e61051c7bb68747a5dcd3e1e699a1d53ebbbcc
|/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Tue Aug 9 00:21:41 2011 +0400
| | | |   
| | | |       Fixed wrong attempt to reuse matrix while DSYEVR is called
| | | |   
| | | |   M	src/shogun/preprocessor/ClassicMDS.cpp
| | | |     
* | | | commit 96ef7398573f8f45d520cc16b149906acc6925b7
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 8 13:20:03 2011 +0200
| | | | 
| | | |     fix make clean/distclean targets
| | | | 
| | | | M	src/Makefile
| | | |       
* | | |   commit 8e9019aebd6288c2713d88e5c874b5ccdbaed723
|\ \ \ \  Merge: 8730565 b49b72d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Aug 8 04:19:11 2011 -0700
| | | | | 
| | | | |     Merge pull request #270 from frx/streaming_vw
| | | | |     
| | | | |     VW classes are now mostly SGObjects
| | | | |      
| * | | | commit b49b72d1794692586166fa7acf43b53aca8af39c
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 16:27:48 2011 +0530
| | | | | 
| | | | |     Used realloc for get_vector_and_label in StreamingAsciiFile.
| | | | | 
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| * | | | commit 28b84c287efc09c8f567d2b75568582e67ac1abc
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 06:00:41 2011 +0530
| | | | | 
| | | | |     Added base class constructor calls to VwRegressor.
| | | | | 
| | | | | M	src/shogun/classifier/vw/VwRegressor.cpp
| | | | |      
| * | | | commit bcbdb859c09a5c532adb278420011b22f3a990f5
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Aug 8 05:58:03 2011 +0530
| | | | | 
| | | | |     Made VW environment and regressor SGObjects.
| | | | | 
| | | | | A	src/shogun/classifier/vw/VwEnvironment.cpp
| | | | | A	src/shogun/classifier/vw/VwEnvironment.h
| | | | | A	src/shogun/classifier/vw/VwRegressor.cpp
| | | | | A	src/shogun/classifier/vw/VwRegressor.h
| | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | D	src/shogun/classifier/vw/vw_environment.cpp
| | | | | D	src/shogun/classifier/vw/vw_environment.h
| | | | | D	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | D	src/shogun/classifier/vw/vw_regressor.h
| | | | |        
* | | | |   commit 873056520059f8be7ca26c6472554fe9bcd70114
|\ \ \ \ \  Merge: 015de5a 1c777b2
| |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | / /   Date:   Mon Aug 8 04:14:06 2011 -0700
| | |/ /    
| |/| |         Merge pull request #271 from sploving/master
| | | |         
| | | |         support csharp SGVector and SGMatrix and add two examples: VectorTest.cs and MatrixTest.cs
| | | |     
| * | | commit 1c777b2dde43c62c7af03ff12c5d15c07167e536
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Sun Aug 7 21:53:15 2011 +0800
| | | | 
| | | |     make matrix work
| | | | 
| | | | A	examples/undocumented/csharp_modular/MatrixTest.cs
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
| * | | commit f64984f7b6b89dcd3b365a4d54f1a7a1da697af1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Sun Aug 7 18:37:44 2011 +0800
| | | | 
| | | |     make SGVector work well
| | | | 
| | | | M	examples/undocumented/csharp_modular/VectorTest.cs
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
* | | | commit 015de5ab8e15c885fd4827b63b1c5be82dd836db
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 06:24:27 2011 +0400
| | | | 
| | | |     Fixed runtime error with LLE
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
* | | | commit b44191d9c6fef26c856fb36f9a477795937da254
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 06:22:09 2011 +0400
| | | | 
| | | |     Made ARPACK residual vector non-random
| | | | 
| | | | M	src/shogun/mathematics/arpack.cpp
| | | |     
* | | | commit 2ab04b100c987feb25df29bae648c89c31362cd0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 8 03:18:12 2011 +0400
| | | | 
| | | |     Fixed wrong attempt to reuse matrix when LAPACK is used in LLE null space finding
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |       
* | | |   commit 3f165e8045c51318efcea341e69c9454143cf0aa
|\ \ \ \  Merge: c6dc26b 85a0cd9
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Aug 8 03:16:39 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 85a0cd9a4eb8dcccf5bf4f16af41f709442e903f
| |\ \ \ \  Merge: 62a3f25 a266704
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sun Aug 7 15:10:52 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #268 from frx/streaming_vw
| | | | | |     
| | | | | |     Restructured vw class definitions
| | | | | |       
| | * | | | commit a26670480737ce519bd4374498e2148ad075b17a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 20:48:47 2011 +0530
| | | | | | 
| | | | | |     Added num_passes in vw environment.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit ffa136a7b726731caef64d86c28dcdae95e64ddb
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 17:33:42 2011 +0530
| | | | | | 
| | | | | |     Replaced ambiguous name 'constant' with 'constant_hash'
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | |       
| | * | | | commit 17b23e158a9fd97384aaa666a90fa81e256e7859
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 17:25:48 2011 +0530
| | | | | | 
| | | | | |     Added buf_read and buf_write to IOBuffer.
| | | | | |     Replaced string and vector in VW to use shogun compatible types.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/io/IOBuffer.cpp
| | | | | | M	src/shogun/io/IOBuffer.h
| | | | | |       
| | * | | | commit 3289391050050761bc8c498739fabf03fa6dc03b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun Aug 7 03:04:00 2011 +0530
| | | | | | 
| | | | | |     Moved substring to SGIO.h
| | | | | | 
| | | | | | D	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/io/SGIO.h
| | | | | |       
| | * | | | commit 341574afb1c621f570c4d138bfbc6269ced059ce
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:31:51 2011 +0530
| | | | | | 
| | | | | |     Further type conversion from vw to shogun types.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit 9ed41bdca4c4efa39f9ccbdb45bdc4c54318418c
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:20:02 2011 +0530
| | | | | | 
| | | | | |     Replaced double with float64_t in vw
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | |       
| | * | | | commit 487574c2cb860299ae8c0185287daca5c014853f
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:14:53 2011 +0530
| | | | | | 
| | | | | |     Replaced size_t with index_t for vw files.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.h
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | M	src/shogun/classifier/vw/vw_regressor.h
| | | | | |       
| | * | | | commit f1a8c8b10c33faf0c4c0d628579daca8cf186ea8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 18:02:25 2011 +0530
| | | | | | 
| | | | | |     Changed an include file in substring.
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | |       
| | * | | | commit 899f28b97def0ac4b2f0585eda8fb1dfdcc3ebe8
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:58:23 2011 +0530
| | | | | | 
| | | | | |     Replaced include paths for vw
| | | | | | 
| | | | | | M	src/shogun/classifier/vw/substring.h
| | | | | | M	src/shogun/classifier/vw/vw_common.h
| | | | | | M	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.cpp
| | | | | | M	src/shogun/classifier/vw/vw_example.h
| | | | | | M	src/shogun/classifier/vw/vw_label.cpp
| | | | | | M	src/shogun/classifier/vw/vw_label.h
| | | | | | M	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | M	src/shogun/classifier/vw/vw_regressor.h
| | | | | |       
| | * | | | commit aecb4e006fa644b2298915e077486f6358125e4a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:56:16 2011 +0530
| | | | | | 
| | | | | |     Moved to vw/
| | | | | | 
| | | | | | A	src/shogun/classifier/vw/substring.h
| | | | | | A	src/shogun/classifier/vw/vw_common.h
| | | | | | A	src/shogun/classifier/vw/vw_environment.cpp
| | | | | | A	src/shogun/classifier/vw/vw_environment.h
| | | | | | A	src/shogun/classifier/vw/vw_example.cpp
| | | | | | A	src/shogun/classifier/vw/vw_example.h
| | | | | | A	src/shogun/classifier/vw/vw_label.cpp
| | | | | | A	src/shogun/classifier/vw/vw_label.h
| | | | | | A	src/shogun/classifier/vw/vw_regressor.cpp
| | | | | | A	src/shogun/classifier/vw/vw_regressor.h
| | | | | | D	src/shogun/lib/vw/substring.h
| | | | | | D	src/shogun/lib/vw/vw_common.h
| | | | | | D	src/shogun/lib/vw/vw_environment.cpp
| | | | | | D	src/shogun/lib/vw/vw_environment.h
| | | | | | D	src/shogun/lib/vw/vw_example.cpp
| | | | | | D	src/shogun/lib/vw/vw_example.h
| | | | | | D	src/shogun/lib/vw/vw_label.cpp
| | | | | | D	src/shogun/lib/vw/vw_label.h
| | | | | | D	src/shogun/lib/vw/vw_regressor.cpp
| | | | | | D	src/shogun/lib/vw/vw_regressor.h
| | | | | |       
| | * | | | commit 9f27da2109da1eeaac7fc544c75ea9f43a789fc0
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sat Aug 6 17:35:10 2011 +0530
| | | | | | 
| | | | | |     Split vw_types into separate header files.
| | | | | | 
| | | | | | A	src/shogun/lib/vw/vw_common.h
| | | | | | A	src/shogun/lib/vw/vw_environment.cpp
| | | | | | A	src/shogun/lib/vw/vw_environment.h
| | | | | | A	src/shogun/lib/vw/vw_example.cpp
| | | | | | A	src/shogun/lib/vw/vw_example.h
| | | | | | A	src/shogun/lib/vw/vw_label.cpp
| | | | | | A	src/shogun/lib/vw/vw_label.h
| | | | | | A	src/shogun/lib/vw/vw_regressor.cpp
| | | | | | A	src/shogun/lib/vw/vw_regressor.h
| | | | | | D	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit 80833c61711172951e208678627fb125c1cf911a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 21:18:55 2011 +0530
| | | | | | 
| | | | | |     Added VW substring header file.
| | | | | | 
| | | | | | A	src/shogun/lib/vw/substring.h
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit e9a8bf2ef5bb124a42f540c3994fd072d690fa3b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 18:54:30 2011 +0530
| | | | | | 
| | | | | |     Further cleaning up of vw_types.h
| | | | | | 
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit 1a26a74d4dbe47f711efb7da7055a5e34ed49429
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Aug 5 18:43:27 2011 +0530
| | | | | | 
| | | | | |     Added vw_types.h with cleaning up.
| | | | | | 
| | | | | | M	src/shogun/lib/vw/vw_types.h
| | | | | |       
| | * | | | commit d6b6982a68e4553a79af71a7160f5ee0e9d11985
| |/ / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | |   Date:   Fri Aug 5 17:38:01 2011 +0530
| | | | |   
| | | | |       Added vw folder.
| | | | |   
| | | | |   A	src/shogun/lib/vw/vw_types.h
| | | | |      
* | | | | commit c6dc26ba7497acfd612e3a781c2419d0418773ec
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Aug 7 16:58:32 2011 +0400
| | | | | 
| | | | |     Fixed memleak in HLLE
| | | | | 
| | | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit e85f90c734c815a19e1b34b21f17df020b9ed0e5
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Aug 7 16:57:01 2011 +0400
| | | | | 
| | | | |     Fixed wrong order of SG_FREE in ClassicMDS
| | | | | 
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | |      
* | | | | commit df9c242e8b6208ea5f7b96acc47a7da35abf8603
|/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Sun Aug 7 16:56:07 2011 +0400
| | | |   
| | | |       Fixed memory leak in consolidate of FibonacciHeap
| | | |   
| | | |   M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
* | | | commit 62a3f253e68facebc524f5776109bc034eb2c5e4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:14:48 2011 +0400
| | | | 
| | | |     Updated python dimreduct graphical examples
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | | | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | | |     
* | | | commit 60bde073fd88eb16b8489177b8480eeecd471ea1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:11:08 2011 +0400
| | | | 
| | | |     Enforce W matrices in LTSA and HLLE to zero
| | | | 
| | | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | |     
* | | | commit ef0e4b175e57ffc5f97e9c839c52fefe2908c5e0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 03:10:39 2011 +0400
| | | | 
| | | |     Removed memleak from LandmarkMDS
| | | | 
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | |     
* | | | commit 92902801a9fac8045d39099b05106ae5dfd58ef9
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 02:51:03 2011 +0400
| | | | 
| | | |     Made LandmarkMDS parallel
| | | | 
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | M	src/shogun/preprocessor/LandmarkMDS.h
| | | |     
* | | | commit bec433f2c9e898f5e9bd9ddddc716a34c5f7d050
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Aug 7 02:49:05 2011 +0400
| | | | 
| | | |     Numthreads and style fixes for Isomap
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | |       
* | | |   commit e1eac745c2bceab04171e3463f3109e5641554db
|\ \ \ \  Merge: 74f775f 94d79dc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Aug 6 13:07:41 2011 -0700
| | | | | 
| | | | |     Merge pull request #269 from alesis/gmm
| | | | |     
| | | | |     Some fixes and checking for illegal use.
| | | | |      
| * | | | commit 94d79dcfec4618ba558ec96b8b90ed3428792b73
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Tue Aug 2 15:53:47 2011 +0100
| | | |   
| | | |       Some fixes and checking for illegal use.
| | | |   
| | | |   M	src/shogun/clustering/GMM.cpp
| | | |     
* | | | commit 74f775f72fbcae9f6a693634abff2d6ce4d31efb
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Aug 6 16:56:54 2011 +0400
| | | | 
| | | |     Made Isomap Heap-Dijkstra parallel
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | | M	src/shogun/preprocessor/Isomap.h
| | | |     
* | | | commit 86e9ed98a7bfc1c192e4923a03cc7ad98e0ebf40
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Aug 6 04:08:51 2011 +0400
| | | | 
| | | |     Made CDistance parallel
| | | | 
| | | | M	src/shogun/distance/Distance.cpp
| | | | M	src/shogun/distance/Distance.h
| | | |       
* | | |   commit f27d0510aa70e27894b03c0924dd765bd151fd7a
|\ \ \ \  Merge: 7013309 b3d5d69
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Sat Aug 6 00:09:17 2011 +0200
| | | |   
| | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit b3d5d69cd5ab4c08f3f3671837f60af64b4099c1
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:25:23 2011 +0400
| | | | 
| | | |     Introduced Laplacian Eigenmaps preprocessor
| | | | 
| | | | A	examples/undocumented/python_modular/preprocessor_laplacianeigenmaps_modular.py
| | | | M	src/interfaces/modular/Preprocessor.i
| | | | M	src/interfaces/modular/Preprocessor_includes.i
| | | | A	src/shogun/preprocessor/LaplacianEigenmaps.cpp
| | | | A	src/shogun/preprocessor/LaplacianEigenmaps.h
| | | | M	src/shogun/preprocessor/Preprocessor.h
| | | |     
| * | | commit 0ed492d24637f24161d19ae1863aaa03b92581b7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:24:17 2011 +0400
| | | | 
| | | |     Removed Isomap type with only K-Isomap remain
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.h
| | | |     
| * | | commit b683aa0e315448334cabc5c43720a25f1be27988
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:23:55 2011 +0400
| | | | 
| | | |     Added generalized eigenproblem support to ARPACK wrapper and adapted LLE and MDS
| | | | 
| | | | M	src/shogun/mathematics/arpack.cpp
| | | | M	src/shogun/mathematics/arpack.h
| | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
| * | | commit 93dcc58ddf879085e5584d164af5c6d44607c50e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Aug 5 19:22:17 2011 +0400
| | | | 
| | | |     Added DSYGVX routine wrapper
| | | | 
| | | | M	src/shogun/mathematics/lapack.cpp
| | | | M	src/shogun/mathematics/lapack.h
| | | |       
| * | |   commit 4aeadde261f48bfea207f44f32945eb57fc434dc
| |\ \ \  Merge: 2be3008 47bb9cf
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Aug 5 04:08:59 2011 -0700
| | | | | 
| | | | |     Merge pull request #263 from frx/streaming_vw
| | | | |     
| | | | |     Modified parse ring and parser to avoid race conditions, and for speedup.
| | | | |      
| | * | | commit 47bb9cf66fc1c0f2168c246ccec718d6b352e52d
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:46:47 2011 +0530
| | | | | 
| | | | |     Erased irrelevant comment.
| | | | | 
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | |      
| | * | | commit a95b0a5e837cfa5bdd2d3c502d2491249ee667e7
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:45:21 2011 +0530
| | | | | 
| | | | |     Replaced StreamingAsciiFile.cpp with the newest version.
| | | | | 
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| | * | | commit 28cd0091b4d001b269bc5f258632f2ddfa519d2b
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Aug 5 00:41:59 2011 +0530
| | | | | 
| | | | |     Removed use of new[] from ParseBuffer.h
| | | | | 
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | | M	src/shogun/io/StreamingAsciiFile.cpp
| | | | |      
| | * | | commit a726b018dc14f21d457fb86b8c54ec7702632f62
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu Aug 4 21:49:16 2011 +0530
| | | | | 
| | | | |     Modified parse ring and parser to avoid race conditions, and for speedup.
| | | | | 
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/ParseBuffer.h
| | | | |        
| * | | |   commit 2be30082a9662df568bc9724e32d2e98d599e094
| |\ \ \ \  Merge: f778cbe 2771890
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri Aug 5 04:08:39 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #266 from karlnapf/master
| | | | | |     
| | | | | |     fixes for DataType.h
| | | | | |       
| | * | | | commit 2771890e2a59d8bb5bf174ab1f4c5d4c12e90d28
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:16:10 2011 +0200
| | | | | | 
| | | | | |     added some comments
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit c18e07f4d62315ba44558a2c7741dafcc05573fe
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:10:47 2011 +0200
| | | | | | 
| | | | | |     made example work
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit a751b5a50b57f2a9cb5e3bb1c7e2f5c0edc4c2bd
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 11:34:29 2011 +0200
| | | | | | 
| | | | | |     bug fix
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 77529ad61dfb3ab6f305e0c44e3066e5f3691904
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 17:15:54 2011 +0200
| | | | | | 
| | | | | |     bugfixes
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 2359c8564f5b14857a33ba3365e897331b384552
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:55:47 2011 +0200
| | | | | | 
| | | | | |     made copy_subset non-const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit e4e5097371bf53ee2bf7e0852c179b48fa6071c4
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:55:11 2011 +0200
| | | | | | 
| | | | | |     added example/test for copy_subset on sparse features
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | A	examples/undocumented/libshogun/features_copy_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit fdcdfd50e004811b201f1d19d0ed64c9862b6037
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 13:45:32 2011 +0200
| | | | | | 
| | | | | |     towards working copy_subset
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 0cd0cfcba8c310d3d73e1f2fdd53f9c855040d5e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 3 12:53:38 2011 +0200
| | | | | | 
| | | | | |     work towards copy_feature_subset
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit ed042fe886ba7897a50c8960c5886c65b37b0187
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Aug 3 11:42:35 2011 +0200
| | | | | | 
| | | | | |     started implementing copy_subset method
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 52065edbb7f2629dbfc81be15bbece21bc7a34c7
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:25:01 2011 +0200
| | | | | | 
| | | | | |     made compute_sparse_feature_vector non-const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit a3a1c651137b72c5c414c001b9785755863bc428
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:23:16 2011 +0200
| | | | | | 
| | | | | |     made get_sparse_feature_vector not being const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit 334f7a1e5e52f00d4c11a1865ea41c72bdcf5c7d
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:20:25 2011 +0200
| | | | | | 
| | | | | |     made get_sparse_feature_vector and compute_sparse_feature_vector const
| | | | | | 
| | | | | | M	src/shogun/features/SparseFeatures.h
| | | | | |       
| | * | | | commit e3bf80e0dd35151012e37f57a23581252e091c77
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 16:01:01 2011 +0200
| | | | | | 
| | | | | |     fixed bug, uninitialised num_vectors variable
| | | | | | 
| | | | | | M	src/shogun/lib/DataType.h
| | | | | |       
| | * | | | commit 9013785c4c3c735e9ed684e6401f32a7bd95907a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:50:53 2011 +0200
| | | | | | 
| | | | | |     renamed all free variable to avoid name clashes with free()
| | | | | | 
| | | | | | M	src/shogun/lib/DataType.h
| | | | | |         
| * | | | |   commit f778cbe89e9e0a37c9412f16abd639324cdef350
| |\ \ \ \ \  Merge: 4e8838e edab68c
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Fri Aug 5 03:49:08 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #265 from karlnapf/master
| | | | | |       
| | | | | |       example corrections and made get_num_preprocessors() const
| | | | | |       
| | * | | | commit edab68ce196186fe0981428733004294f738c9b0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:27:43 2011 +0200
| | | | | | 
| | | | | |     made copy_subset() non-const
| | | | | | 
| | | | | | M	src/shogun/features/Features.h
| | | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | | M	src/shogun/features/StringFeatures.h
| | | | | |       
| | * | | | commit a06ede4417b05be02e52819e244fb9a0ade88092
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri Aug 5 12:30:34 2011 +0200
| | | | | | 
| | | | | |     applied get_spare_vector() changes
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | | |       
| | * | | | commit 6b6a17852951bf6407c491fd037a3f817e29c018
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Aug 4 15:02:23 2011 +0200
| | | | | | 
| | | | | |     made get_num_preprocessors() const
| | | | | | 
| | | | | | M	src/shogun/features/Features.h
| | | | | |         
| * | | | |   commit 4e8838e8b15f9bfac932ab0d8cf7ce4e7ff8735d
| |\ \ \ \ \  Merge: bf0c2af e06c208
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | / / /   Date:   Fri Aug 5 02:54:12 2011 -0700
| | |/ / /    
| |/| | |         Merge pull request #264 from karlnapf/master
| | | | |         
| | | | |         SGVector replacements
| | | | |      
| | * | | commit e06c20896afd118c1d6cafbf9db50fdc9e4cdc49
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 18:01:03 2011 +0200
| | | | | 
| | | | |     SGVector replacement fixes
| | | | | 
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | |      
| | * | | commit 9037d90f4b28f4b3ec5003d8c80630afa4d16bd1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:39:03 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | | |      
| | * | | commit e78fa8624d9dc06212ab003cb6667dca00a91066
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:29:15 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | |      
| | * | | commit 6985cc3d3b0e28899556b7828065b8d3fbed071f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 17:16:10 2011 +0200
| | | | | 
| | | | |     SGVector replacements
| | | | | 
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | |      
| | * | | commit 569c74a6654112208d873a0b00c7abb5e6f80601
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Aug 3 13:03:00 2011 +0200
| | | |   
| | | |       towards SGVector replacement in get_sparse_feature_vector
| | | |   
| | | |   M	src/shogun/features/SparseFeatures.h
| | | |       
| * | |   commit bf0c2afee970297f35fbe4c884191993901ed21a
| |\ \ \  Merge: beb108c 765bfc3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Aug 4 14:08:49 2011 -0700
| | | | | 
| | | | |     Merge pull request #262 from karlnapf/master
| | | | |     
| | | | |     made get_dim_feature_space method const
| | | | |      
| | * | | commit 765bfc390ee9b213ea8ecf7f41120af5f0b27406
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 13:09:18 2011 +0200
| | | | | 
| | | | |     removed another compiler warning
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 332c8e41dfda5d0db30fb23be94933b725c6c871
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 13:08:02 2011 +0200
| | | | | 
| | | | |     (hopefully) removed some warnings regarding initialization
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 4d85fba357387d4c3ae972f70bbfded62d09ee6b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 12:45:19 2011 +0200
| | | | | 
| | | | |     made get_dim_feature_space method const
| | | | | 
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | |      
| | * | | commit 51aed9ec32597cea85df9c9959e2c6cbfa5fc1e6
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Aug 3 12:41:06 2011 +0200
| | | |   
| | | |       made get_dim_feature_space method const
| | | |   
| | | |   M	src/shogun/features/CombinedDotFeatures.h
| | | |   M	src/shogun/features/DotFeatures.h
| | | |   M	src/shogun/features/ExplicitSpecFeatures.h
| | | |   M	src/shogun/features/HashedWDFeatures.h
| | | |   M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | |   M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | |   M	src/shogun/features/LBPPyrDotFeatures.h
| | | |   M	src/shogun/features/PolyFeatures.h
| | | |   M	src/shogun/features/SNPFeatures.h
| | | |   M	src/shogun/features/SimpleFeatures.h
| | | |   M	src/shogun/features/SparseFeatures.h
| | | |   M	src/shogun/features/SparsePolyFeatures.h
| | | |   M	src/shogun/features/StreamingDotFeatures.h
| | | |   M	src/shogun/features/StreamingSimpleFeatures.h
| | | |   M	src/shogun/features/StreamingSparseFeatures.h
| | | |   M	src/shogun/features/WDFeatures.h
| | | |       
| * | |   commit beb108c27bebcdbeb26057110cd36bd92ea7b9f2
| |\ \ \  Merge: eb4d547 787f384
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Aug 4 03:55:53 2011 -0700
| | | |   
| | | |       Merge pull request #261 from sploving/master
| | | |       
| | | |       add out typemap
| | | |     
| | * | commit 787f384cf1bfd59837ed4a37d6835163b12bdf5d
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Thu Aug 4 12:33:51 2011 +0800
| | | | 
| | | |     add csout typemap
| | | | 
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
* | | | commit 70133099d7b181647a342c4e7e88bfad5b69d760
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Aug 6 00:07:43 2011 +0200
| | |   
| | |       derive java modular classes from Serializable and add dummy
| | |       write/readObject functions
| | |   
| | |   M	src/interfaces/java_modular/swig_typemaps.i
| | |   M	src/interfaces/modular/SGBase.i
| | |    
* | | commit eb4d547edaa4757a30fe51dfbb3d8622c505ded9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Aug 4 01:33:22 2011 +0400
| | | 
| | |     News and contributions additions
| | | 
| | | M	src/CONTRIBUTIONS
| | | M	src/NEWS
| | |      
* | |   commit 9dc8f2bf46438efc1bbe236c63433a1bf5325664
|\ \ \  Merge: 6e6794a 7a745ad
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Aug 3 22:57:27 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 7a745ad175e872da4b9ae2bfe8f749df8d45ab07
| |\ \ \  Merge: 1e48c60 a8175a3
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Aug 3 11:11:51 2011 -0700
| | | |   
| | | |       Merge pull request #259 from sploving/master
| | | |       
| | | |       support c# sgvector
| | | |     
| | * | commit a8175a35879a120d4de11b859d5ec56d9c1ce883
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Aug 3 16:41:15 2011 +0800
| | | | 
| | | |     add VectorTest example
| | | | 
| | | | A	examples/undocumented/csharp_modular/VectorTest.cs
| | | |     
| | * | commit b8ead091b199f10c36dbd9accfa6e184cb79fa15
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Aug 3 16:40:29 2011 +0800
| | | | 
| | | |     support C# SGVector
| | | | 
| | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | |     
| | * | commit a5dca8d185ebe009024b628329306439ca28c80e
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 29 21:21:33 2011 +0800
| | | | 
| | | |     add kernel_linear_byte/word_modular
| | | | 
| | | | A	examples/undocumented/ruby_modular/kernel_linear_byte_modular.rb
| | | | A	examples/undocumented/ruby_modular/kernel_linear_word_modular.rb
| | | |       
| * | |   commit 1e48c60d83e60867f1aa7cde9cc6ad37eef475a2
| |\ \ \  Merge: 314f4b1 36a6c15
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Aug 3 11:08:28 2011 -0700
| | | | | 
| | | | |     Merge pull request #260 from karlnapf/master
| | | | |     
| | | | |     data type extensions
| | | | |      
| | * | | commit 36a6c15170ef037ee4e4d1ab6dcdf2dbad3acc44
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Aug 3 12:16:33 2011 +0200
| | | | | 
| | | | |     -added free and destroy methods for some data-types
| | | | |     -added constructors and methods to SGSparseVector
| | | | |     -added constructor to create new sparse matrix in memory
| | | | |     -some white space changes
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| * | | | commit 314f4b1a505c4bfad7f13f3580e6245ce3beb82f
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Wed Aug 3 21:04:59 2011 +0400
| | | |   
| | | |       Changed isomap geodesic distance with Dijkstra Heap instead of Floyd
| | | |   
| | | |   M	src/shogun/preprocessor/Isomap.cpp
| | | |     
| * | | commit 9d3e4f40579db3b3e7a2c5785feaea9ed16984cc
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed Aug 3 03:28:50 2011 +0400
| | | | 
| | | |     Removed unnecessary symmetrize matrix in Isomap
| | | | 
| | | | M	src/shogun/preprocessor/Isomap.cpp
| | | |     
* | | | commit 6e6794ac01c8ac1f7ae0ed252197ed50e443ad53
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Aug 3 22:36:46 2011 +0200
| | |   
| | |       fix osx build failure (inspired by the patch from av3ngr)
| | |   
| | |   M	src/shogun/io/AsciiFile.cpp
| | |      
* | |   commit 6387718cb3a8b19bb0ff3ff603cfefd0714056db
|\ \ \  Merge: a2be4dd 8c24d9e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Aug 2 12:05:04 2011 -0700
| | | | 
| | | |     Merge pull request #258 from karlnapf/master
| | | |     
| | | |     model selection now really works on model_selection_parameters
| | | |     
| * | | commit 8c24d9e3cdb09221d4b6cb54cb1da13e05dc7611
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 18:09:48 2011 +0200
| | | | 
| | | |     added methods to get names of model selection parameters and their descriptions and index (to get type)
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | |     
| * | | commit 61897972b7bb5fee5e28f16baba0c9647b4dc310
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 18:08:54 2011 +0200
| | | | 
| | | |     added example how to see which parameters are available for model selection, including description and type
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/parameter_modsel_parameters.cpp
| | | |     
| * | | commit 8e0b6dde183893bdeb6219a8ed7d8b3f88e4eb53
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:38 2011 +0200
| | | | 
| | | |     made example smaller and removed a "END" print
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | |     
| * | | commit 6a022212206a111924806534358ceb0c4f374897
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:17 2011 +0200
| | | | 
| | | |     "End" print removal
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | M	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | |     
| * | | commit 4d0d9347289150e6031ecd96359530329d3d5800
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:17:03 2011 +0200
| | | | 
| | | |     usage of SG_ADD for parameter registration
| | | | 
| | | | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | | |     
| * | | commit e30227a11c6e65f46c05f5371e84528af005c6c8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:09:39 2011 +0200
| | | | 
| | | |     usage of CMath::exp instead of std::exp
| | | | 
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | |     
| * | | commit f42e297f9d07f4fb35ac60c349cb7f7696b38c5b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:09:13 2011 +0200
| | | | 
| | | |     usage of SG_ADD for registering parameters
| | | | 
| | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |     
| * | | commit fa72e811c6db976e8091f320f16ba49778289cd2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:51 2011 +0200
| | | | 
| | | |     removed a modsel parameter
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | |     
| * | | commit 8ae650b5785343e11e24b54bd0f67383d6653d31
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:33 2011 +0200
| | | | 
| | | |     removed "end" print out
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit d43f67d16f3e92faf13281d33290d4820fce8633
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 16:08:10 2011 +0200
| | | | 
| | | |     applied name change
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | |     
| * | | commit 2bd40d52c8ec3af859e76f80b08446e35d466773
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:57:10 2011 +0200
| | | | 
| | | |     copy&pase error mistake
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit a7af19386931686c25b336c447de00d9dec672ff
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:54:22 2011 +0200
| | | | 
| | | |     applied name change
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit cb01baa2b0e00c65196da732753197e83578b55b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:54:15 2011 +0200
| | | | 
| | | |     -name change and usage of model selection parameters in apply_to_parameter
| | | | 
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit e3a8ec64620bee777bb32c79bc14d75548672a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:53:38 2011 +0200
| | | | 
| | | |     SGVector replacement and usage of SG_ADD for registering parameters
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | |     
| * | | commit e4cda95777095e6528d340436d72e8d70e8aa870
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:52:50 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/SVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | |     
| * | | commit 416ed90f242e7b83e61f529efeae0f7b8131622a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:52:08 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | |     
| * | | commit 8481716881a5b6e33a924a2c59bd917577c0ae2c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:48 2011 +0200
| | | | 
| | | |     added ASSERT
| | | | 
| | | | M	src/shogun/base/Parameter.cpp
| | | |     
| * | | commit 181ac01a7e08d16ab5f88f42047d64032aac1f54
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:35 2011 +0200
| | | | 
| | | |     removal of "END" print
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | |     
| * | | commit 2e5469fe930fd64417e2e2d1402091713855ede9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:19 2011 +0200
| | | | 
| | | |     SGVector replacement
| | | | 
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | |     
| * | | commit fee64d1024c7a421f52085ca25eb6512794786a9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 15:51:04 2011 +0200
| | | | 
| | | |     -replaced linear_term float array by SGVector
| | | |     -avoid making copies in get_linear_term()
| | | |     -usage of SG_ADD to register parameters, model selection parameters are also registered now
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | |     
| * | | commit 24db29761214c0d44b2a0bed6056daa5a5d175ed
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 14:44:22 2011 +0200
| | | | 
| | | |     removed print of model selection parameters (not serialized)
| | | | 
| | | | M	src/shogun/base/SGObject.cpp
| | | |     
| * | | commit 8230cbef8cd95eb6daac0beba50131de765fdb79
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 12:55:33 2011 +0200
| | | | 
| | | |     parameter combinations are now applied to model_selection_parameters of a SGObject
| | | | 
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit 0de84389b81774e7c903c23174e7706828e7dd54
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Aug 2 12:54:55 2011 +0200
| | | | 
| | | |     removed get_machine_parameters() and added get_machine()
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | |     
| * | | commit eeacbfacb25cbe8e918c0412de658182be907e3f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Aug 2 12:54:23 2011 +0200
| | |   
| | |       removed unnecessary macros (we have types for matrix and vector now)
| | |   
| | |   M	src/shogun/base/SGObject.h
| | |    
* | | commit a2be4dde5f464aa0e202e3d5ef1abb68209a09d5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Aug 2 05:07:36 2011 +0400
| | | 
| | |     Added fast neighbor search for LLE, HLLE, LTSA with Fibonacci heap
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |      
* | |   commit 6d92388d6f92eaf9b5272f1cd40a31a6b2e065a6
|\ \ \  Merge: 8f35bbc b8e83e8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Aug 1 11:56:56 2011 -0700
| | | | 
| | | |     Merge pull request #251 from frx/streaming_1
| | | |     
| | | |     Loss Functions
| | | |     
| * | | commit b8e83e83f8c2f9ad44297fe36580f498a1098afc
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Aug 1 12:54:15 2011 +0530
| | | | 
| | | |     Added SG_UNREF in destructor for loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 326dbd6f36bc109a9d972eef2f069bc65e6424d5
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Aug 1 12:31:51 2011 +0530
| | | | 
| | | |     Added SG_REF and base class constructor calls for loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit ab25c5bbc3fde6ebc508625bad1b6fdcb99a98bb
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:54:27 2011 +0530
| | | | 
| | | |     Added get_update and get_square_grad functions which are used in VW losses.
| | | | 
| | | | M	src/shogun/loss/HingeLoss.cpp
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.cpp
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.cpp
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.cpp
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.cpp
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.cpp
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit 3dca9e038d8000b0e01fb5f24951a46170733c42
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:19:41 2011 +0530
| | | | 
| | | |     Correct typo in doc.
| | | | 
| | | | M	src/shogun/loss/LogLoss.h
| | | |     
| * | | commit 6fe09ad3230b3fd1659bf271a89993329eec2396
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 18:17:29 2011 +0530
| | | | 
| | | |     Added get_loss_function for SGDQN and OnlineSVMSGD.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | |     
| * | | commit 54e4657f70ea07d09eece76f3066e3e52e223a4f
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 17:03:29 2011 +0530
| | | | 
| | | |     Modified SGD, SGDQN to use loss function classes.
| | | | 
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/loss/HingeLoss.h
| | | | M	src/shogun/loss/LogLoss.cpp
| | | | M	src/shogun/loss/LogLoss.h
| | | | M	src/shogun/loss/LogLossMargin.h
| | | | M	src/shogun/loss/LossFunction.h
| | | | M	src/shogun/loss/SmoothHingeLoss.h
| | | | M	src/shogun/loss/SquaredHingeLoss.h
| | | | M	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit c36e5520f2b98cf7d17a91953af4efc372a11fa4
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 10:58:22 2011 +0530
| | | | 
| | | |     SGD uses shogun loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 691d2596006d335355e9da1ab7c6fea1278ca92c
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 10:42:57 2011 +0530
| | | | 
| | | |     Rewrite of accidentally deleted loss functions.
| | | | 
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | A	src/shogun/loss/HingeLoss.cpp
| | | | A	src/shogun/loss/HingeLoss.h
| | | | A	src/shogun/loss/LogLoss.cpp
| | | | A	src/shogun/loss/LogLoss.h
| | | | A	src/shogun/loss/LogLossMargin.cpp
| | | | A	src/shogun/loss/LogLossMargin.h
| | | | A	src/shogun/loss/LossFunction.h
| | | | A	src/shogun/loss/SmoothHingeLoss.cpp
| | | | A	src/shogun/loss/SmoothHingeLoss.h
| | | | A	src/shogun/loss/SquaredHingeLoss.cpp
| | | | A	src/shogun/loss/SquaredHingeLoss.h
| | | | A	src/shogun/loss/SquaredLoss.cpp
| | | | A	src/shogun/loss/SquaredLoss.h
| | | |     
| * | | commit c162c6a3a71a886eaaaac7b6c41de16bc7cce6aa
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jul 31 02:08:56 2011 +0530
| | | | 
| | | |     Added loss functions, moved to loss/
| | | | 
| | | | D	src/shogun/losses/HingeLoss.cpp
| | | | D	src/shogun/losses/HingeLoss.h
| | | | D	src/shogun/losses/LossFunction.h
| | | | D	src/shogun/losses/SquaredLoss.cpp
| | | | D	src/shogun/losses/SquaredLoss.h
| | | |     
| * | | commit 2f3568b8ffb0bcd3d6b0d58c2ffb43d08c4f9738
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sat Jul 30 11:07:53 2011 +0530
| | | | 
| | | |     Removed VW-specific functions in LossFunction class
| | | | 
| | | | M	src/shogun/losses/HingeLoss.cpp
| | | | M	src/shogun/losses/HingeLoss.h
| | | | M	src/shogun/losses/LossFunction.h
| | | | M	src/shogun/losses/SquaredLoss.cpp
| | | | M	src/shogun/losses/SquaredLoss.h
| | | |     
| * | | commit 57f2d231e0370a7cd5caab812c4a1bba83f6b036
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sat Jul 30 10:54:00 2011 +0530
| | | | 
| | | |     Added loss functions.
| | | | 
| | | | A	src/shogun/losses/HingeLoss.cpp
| | | | A	src/shogun/losses/HingeLoss.h
| | | | A	src/shogun/losses/LossFunction.h
| | | | A	src/shogun/losses/SquaredLoss.cpp
| | | | A	src/shogun/losses/SquaredLoss.h
| | | |       
* | | |   commit 8f35bbc620a5e7178b2fe1004945fc006354431d
|\ \ \ \  Merge: 60efbcd bc3c4b9
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Aug 1 11:22:40 2011 -0700
| | | | | 
| | | | |     Merge pull request #257 from karlnapf/master
| | | | |     
| | | | |     reworked distance machines
| | | | |      
| * | | | commit bc3c4b95afdeab6344aa24e16f076e7b04658510
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:48:04 2011 +0200
| | | | | 
| | | | |     fix compile error
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit af64e4f78d25f5846b47cfbf5ee20d6638ecd200
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:47:37 2011 +0200
| | | | | 
| | | | |     -added init method
| | | | |     -added registration of parameters for serialization
| | | | |     -set store_model_features flag to false by default
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | |      
| * | | | commit b0be93e727462a87419056b48ac4d0fc17a18bc8
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:54 2011 +0200
| | | | | 
| | | | |     updated comments
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | |      
| * | | | commit 94ca93ca4ccd631d6b2573fc8e99a4abf7e16757
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:45 2011 +0200
| | | | | 
| | | | |     -added ASSERT
| | | | |     -reference counting bug fix
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | |      
| * | | | commit b2a3a7d3741249eba57db84269ab32ccb2f9ec61
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:22 2011 +0200
| | | | | 
| | | | |     added ASSERT for indices in compute()
| | | | | 
| | | | | M	src/shogun/distance/Distance.h
| | | | |      
| * | | | commit 777e758c44f25ad6072402c74096eddc5eb2c31b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:32:05 2011 +0200
| | | | | 
| | | | |     fix reference count bug
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | |      
| * | | | commit 19cf81b12cb151df1e36ec7d5f070b9db2262bab
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 15:31:49 2011 +0200
| | | | | 
| | | | |     added kmeans example
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | | A	examples/undocumented/libshogun/clustering_kmeans.cpp
| | | | |      
| * | | | commit c7959e041e2c35cef22c9d4d95ff938be65c66c2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:16:17 2011 +0200
| | | | | 
| | | | |     distance machine now has implemented apply methods which asumes that cluster centers are in lhs of distance variable. Simply returns cluster label with min distance to provided data
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | |      
| * | | | commit 161890e9deda8b7a07119925845d043783ec081f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:15:21 2011 +0200
| | | | | 
| | | | |     -applied changes of distance machine
| | | | |     -some internal changes
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit f1230c3e5f2423e51d990fb9ebd33bfeabc2578d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:14:40 2011 +0200
| | | | | 
| | | | |     -applied distance machine changes
| | | | |     -apply and store_model_features unimplemented for now
| | | | | 
| | | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | |      
| * | | | commit 5c0d80524f0dadd53e40e2348226e16d70858dc9
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:14:09 2011 +0200
| | | | | 
| | | | |     store_model_features now only copied lhs of features
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit 1605cc2ed0cbcb005d22e965b9c3fe3d8c6d596e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Aug 1 12:13:51 2011 +0200
| | | | | 
| | | | |     made store_model_features private
| | | | | 
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/machine/LinearMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | |      
| * | | | commit 0d695d42d18a8c5d027dd9dda9a63f85de48ffd2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jul 31 13:41:39 2011 +0200
| | | | | 
| | | | |     towards model selection for distance machines
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/machine/DistanceMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | |      
| * | | | commit 5452f738ea6a0b9e09041dd6c362f88a2a9405ed
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 15:17:16 2011 +0200
| | | | | 
| | | | |     comments
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit fe430917a318b2cae166a91b44f251e64c7e0514
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 15:14:46 2011 +0200
| | | | | 
| | | | |     implemented apply methods
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 9f2384dbef76c709de42fdbd7074f12f1204b240
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 14:46:29 2011 +0200
| | | | | 
| | | | |     train method now saves cluster centers in lhs of distance variable
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | |      
| * | | | commit 9953ed428e8a86b7dfb7927fc523683bfdf03a4d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 14:39:03 2011 +0200
| | | | | 
| | | | |     -removed mus variable (cluster centers)
| | | | |     -train method now stores these centers in lhs of distance
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 4c7d0c8de60fd3e7d9f5ff73b28c9755be404978
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:56:59 2011 +0200
| | | | | 
| | | | |     added (yet empty) store_model_features() method
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |      
| * | | | commit 0186cd3adb0da5d38d141ac3e58a0502e8847ca5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:44:27 2011 +0200
| | | | | 
| | | | |     fix compile error
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | |      
| * | | | commit 45eeffd2003a7624a053b471f8f21fd19b577e48
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:29:17 2011 +0200
| | | | | 
| | | | |     features are needed for apply, so overwrite store_model_features to duplicate feature data
| | | | | 
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | |      
| * | | | commit 786170294fcc418439d9e9c7088cb43b51318d11
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 29 12:28:47 2011 +0200
| | | | | 
| | | | |     store_model_features now does nothing here
| | | | | 
| | | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | |      
| * | | | commit f4b1d9aba1b06689a8b1f79d1b08cf2ce0b3eb97
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 29 12:10:20 2011 +0200
| | | |   
| | | |       implemented store_model_features() to make DistanceMachines work with cross-validation
| | | |   
| | | |   M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| | | * commit 82733a7df28b8d6fd59786232c3dc614c145f253
| |_|/  Author: Evgeniy Andreev <gsomix@gmail.com>
|/| |   Date:   Tue Aug 9 13:04:55 2011 +0400
| | |   
| | |       Work commit
| | |   
| | |   M	src/shogun/lib/FibonacciHeap.cpp
| | |      
* | |   commit 60efbcdbdc0d9c6cf8f4c54fbad061dd5b1bd516
|\ \ \  Merge: a514bca 44708d4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Aug 1 17:14:44 2011 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | | |     
| * | | commit 44708d4979e5e8880f6237725571f2dbf06f113e
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 16:53:31 2011 +0400
| | | | 
| | | |     More, more fixes in include of Fibonacci heap
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.h
| | | |     
| * | | commit 7190834656c712047f8f19ae4a5f2443a083cd70
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 16:49:37 2011 +0400
| | | | 
| | | |     Typing error
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
| * | | commit 2c66ec85a29544017cc2cd5c90faa624d9ef581e
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 15:26:27 2011 +0400
| | | | 
| | | |     Include file fixed
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.h
| | | |     
| * | | commit c25193c3fa784d040fec069016ae322a3e639305
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 15:21:51 2011 +0400
| | | | 
| | | |     Micro fix
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |     
| * | | commit 2cd984b3fd68a3f964e2941d9ed59ba658a0015b
| | | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | | Date:   Mon Aug 1 14:34:55 2011 +0400
| | | | 
| | | |     Some fixes in Fibonacci heap
| | | | 
| | | | M	src/shogun/lib/FibonacciHeap.cpp
| | | |       
* | | |   commit a514bca4f7200429d1696953ca9d3cadacb80a5f
|\ \ \ \  Merge: 380af5a 2d2fbf8
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jul 31 12:09:22 2011 -0700
| | | | | 
| | | | |     Merge pull request #255 from alesis/gmm
| | | | |     
| | | | |     added SG_UNREF where needed
| | | | |      
| * | | | commit 2d2fbf8433c9bfb0621a046dc7408aa49f15c2d8
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Sun Jul 31 19:28:52 2011 +0100
| | | |   
| | | |       added SG_UNREF where needed
| | | |   
| | | |   M	src/shogun/clustering/GMM.cpp
| | | |       
* | | |   commit 380af5acf4bba4d7cb226fd9dc90ab625b2ac149
|\ \ \ \  Merge: a6586d5 f8fc62c
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Sun Jul 31 10:59:52 2011 -0700
| | | |   
| | | |       Merge pull request #252 from alesis/gmm
| | | |       
| | | |       Memory problem fixes.
| | | |     
| * | | commit f8fc62c7b365df87859be00ef74bde3c6d2b7cdd
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 31 17:44:43 2011 +0100
| | | | 
| | | |     Removed copying
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
| * | | commit ef1a8954a1f5f44c159db1c544804a42273b2142
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 31 07:18:07 2011 +0100
| | | | 
| | | |     Memory problem fixes.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/distributions/Gaussian.h
| | | |       
* | | |   commit a6586d545c32c38ee414efd277d49f41bc8352a0
|\ \ \ \  Merge: fd09670 3ac5c53
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jul 31 05:20:11 2011 -0700
| | | | | 
| | | | |     Merge pull request #254 from karlnapf/master
| | | | |     
| | | | |     SGVector replacement
| | | | |      
| * | | | commit 3ac5c53a62eec98dd1d0b68a2dd80453755f9a1d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Sun Jul 31 13:07:49 2011 +0200
| | | | | 
| | | | |     another SGVector replacement and usage of CMath::sqrt instead of std::sqrt
| | | | | 
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | |        
* | | | |   commit fd0967097e615f9f234f1a18c6269e89d57a2ab4
|\ \ \ \ \  Merge: 95f11a0 062af8b
| |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | / / /   Date:   Sun Jul 31 04:06:47 2011 -0700
| |/ / /    
|/| | |         Merge pull request #253 from karlnapf/master
| | | |         
| | | |         made KMeans serializable and SGVector replacement
| | | |     
| * | | commit 062af8b5cc1b626cbd8dd5e285dd5e2b674528e8
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:57:57 2011 +0200
| | | | 
| | | |     fix compile error
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 78148d3676caad5ad3680f7f14c1f68c9ec99de1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:49:38 2011 +0200
| | | | 
| | | |     more elegant SGVector allocation
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 32262864f75326adada6a12aac232d08468774fe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:32:51 2011 +0200
| | | | 
| | | |     usage of SGVector.destory
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 85f4bb68e68450cb7f47b2628cc454b0e8d5db07
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:23:06 2011 +0200
| | | | 
| | | |     -moved initializations to init method
| | | |     -registration of parameters for serialization
| | | |     -replaced float64_t* R by SGVector
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | |     
| * | | commit 75ef02a617a0c10ea670b8c711e569c2621406b2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 12:05:21 2011 +0200
| | | | 
| | | |     reset to old status, due to memory error
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | |     
| * | | commit 77d3731951ecc458a3749c1b9e26649cd8adfc90
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 11:52:46 2011 +0200
| | | | 
| | | |     Revert "added forgotten initialization"
| | | |     
| | | |     This reverts commit 372bb67d275882dcbf62d7926314e5d1ff9eeb07.
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit 372bb67d275882dcbf62d7926314e5d1ff9eeb07
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sun Jul 31 11:49:49 2011 +0200
| | | | 
| | | |     added forgotten initialization
| | | | 
| | | | M	src/shogun/clustering/KMeans.cpp
| | | |     
| * | | commit cb88253f5fa09236ec651bc74564c8bf42ac3c5f
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 29 16:43:29 2011 +0200
| | |   
| | |       -added init method
| | |       -registered parameters
| | |       -usage of CMath::sqrt instead of ::sqrt
| | |       -replaced float64_t* R variable by SGVector<float64_t>
| | |   
| | |   M	src/shogun/clustering/KMeans.cpp
| | |   M	src/shogun/clustering/KMeans.h
| | |    
* | | commit 95f11a02929a4db4404c4bfdd0670d43cebf0610
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 31 00:45:37 2011 +0200
| | | 
| | |     Hopefully fix compiler errors in GMM/Gaussian. Utilize destroy_*.
| | | 
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/clustering/GMM.h
| | | M	src/shogun/distributions/Gaussian.cpp
| | | M	src/shogun/distributions/Gaussian.h
| | | M	src/shogun/lib/DataType.h
| | |    
* | | commit 42595fa7a75037216c096aeb9879f265c37fdbfe
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 31 00:45:26 2011 +0200
| | | 
| | |     use simple swig enums
| | | 
| | | M	src/interfaces/java_modular/swig_typemaps.i
| | |    
* | | commit 9ca6cc8ef09665423ee823bdeb165f3ac3274d18
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:49:44 2011 +0400
| | | 
| | |     Transitioned HLLE, LTSA and LLE to destroy_matrix routine usage
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 6e05605bfa441ee3d86c5a5aa8fcb3d37f93bf78
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:49:03 2011 +0400
| | | 
| | |     Fixed ARPACK routine calling in ClassicMDS
| | | 
| | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | |    
* | | commit 9a6e8ac46f26965c4aa2dafad84053ad4e4a5e01
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 23:48:37 2011 +0400
| | | 
| | |     Fixed wrong SG_FREE in ARPACK wrapper leading to segfault
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit cbb8d246c4ce604ad523f7f808257fed51b0f0fd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 17:41:04 2011 +0400
| | | 
| | |     Fixed regularization in LLE null-space routine, added posdef option
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |    
* | | commit 5f40ecc94d7970081f9fa5da70cc58ba6fccb8e6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 17:40:10 2011 +0400
| | | 
| | |     Improved ARPACK wrapper doc
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | | M	src/shogun/mathematics/arpack.h
| | |    
* | | commit 518360dc4d92852aa2f31dd986f902f98b309ba4
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 02:58:48 2011 +0400
| | | 
| | |     Added forgotten DGETRS define
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | |    
* | | commit f1167d6343e7e947da8c92fd71deee3b3d32cbd8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 01:42:53 2011 +0400
| | | 
| | |     Improved ARPACK performance by getting rid of matrix inverse
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit 2c7f2531f27cc259ae43468d9f12cc34c1990d24
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat Jul 30 01:41:52 2011 +0400
| | | 
| | |     Added DPOTRS and DGETRS wrappers for LAPACK
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |      
* | |   commit 91831a1d5307c860f27910bc76127fe0c2e83b6b
|\ \ \  Merge: ccd86e9 c94f370
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 29 10:02:25 2011 -0700
| | | | 
| | | |     Merge pull request #249 from karlnapf/master
| | | |     
| | | |     fix small issues
| | | |     
| * | | commit c94f3705178f992d98b2f75e527933daa25d6035
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 29 15:55:42 2011 +0200
| | | | 
| | | |     added parameter include
| | | | 
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| * | | commit 660b1805f3ba1476064b5390981dd327b952c9f9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 29 15:54:18 2011 +0200
| | | | 
| | | |     store_model_features is now in header file
| | | | 
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | |     
| * | | commit 63fada6e196ece6f418e146d6b7ebd97c22783ef
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 29 15:53:06 2011 +0200
| | |   
| | |       added init method
| | |       made store_model_features do nothing
| | |   
| | |   M	src/shogun/machine/DistanceMachine.cpp
| | |   M	src/shogun/machine/DistanceMachine.h
| | |      
* | |   commit ccd86e93c704b6d1e53637039ab81310cdcaa84d
|\ \ \  Merge: 29575c9 af57ba7
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | /   Date:   Fri Jul 29 06:21:23 2011 -0700
| |/    
|/|         Merge pull request #248 from gsomix/master
| |         
| |         Arrays are replaced by SGVector in CGaussianNaiveBayes
| |   
| * commit af57ba7c3682fbbef3c80668bee31a7f3a583ce7
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Fri Jul 29 16:13:21 2011 +0400
| | 
| |     Arrays is replaced by SGVector in CGaussianNaiveBayes
| | 
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.h
| |   
* | commit 29575c97d1af503136bd48221cff86355e1f7a30
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 13:47:56 2011 +0200
| | 
| |     add proper check.sh for csharp
| |     
| |     syntax is
| |     	./check.sh minimal_test.cs
| |     or just
| |     ./check.sh
| | 
| | A	examples/undocumented/csharp_modular/check.sh
| |     
* |   commit 37e9718706668604cdda9d1f69a20ca0ee3a6ba0
|\ \  Merge: 1510d31 576b6e8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 29 04:32:26 2011 -0700
| | | 
| | |     Merge pull request #247 from karlnapf/master
| | |     
| | |     completely applied renaming train -> train_machine (was only done for KernelMachines before)
| | |    
| * | commit 576b6e80f6b284aa1f01cf3a9f8b84634b8a4642
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Jul 29 13:21:01 2011 +0200
| |   
| |       renamed train method to train_machine and made it private in order to complete changes made to CMachine
| |   
| |   M	src/shogun/classifier/KNN.cpp
| |   M	src/shogun/classifier/KNN.h
| |   M	src/shogun/classifier/LDA.cpp
| |   M	src/shogun/classifier/LDA.h
| |   M	src/shogun/classifier/LPBoost.cpp
| |   M	src/shogun/classifier/LPBoost.h
| |   M	src/shogun/classifier/LPM.cpp
| |   M	src/shogun/classifier/LPM.h
| |   M	src/shogun/classifier/Perceptron.cpp
| |   M	src/shogun/classifier/Perceptron.h
| |   M	src/shogun/classifier/PluginEstimate.cpp
| |   M	src/shogun/classifier/PluginEstimate.h
| |   M	src/shogun/classifier/SubGradientLPM.cpp
| |   M	src/shogun/classifier/SubGradientLPM.h
| |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| |   M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| |   M	src/shogun/classifier/svm/SVMLin.cpp
| |   M	src/shogun/classifier/svm/SVMLin.h
| |   M	src/shogun/classifier/svm/SVMOcas.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.h
| |   M	src/shogun/classifier/svm/SVMSGD.cpp
| |   M	src/shogun/classifier/svm/SVMSGD.h
| |   M	src/shogun/classifier/svm/SubGradientSVM.cpp
| |   M	src/shogun/classifier/svm/SubGradientSVM.h
| |   M	src/shogun/classifier/svm/WDSVMOcas.cpp
| |   M	src/shogun/classifier/svm/WDSVMOcas.h
| |   M	src/shogun/clustering/Hierarchical.cpp
| |   M	src/shogun/clustering/Hierarchical.h
| |   M	src/shogun/clustering/KMeans.cpp
| |   M	src/shogun/clustering/KMeans.h
| |     
* |   commit 1510d315efcc4018dcbf47838a561ddc6a8d77cc
|\ \  Merge: 035f3cb 3ba5d3b
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Fri Jul 29 13:30:31 2011 +0200
| |   
| |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| |     
| *   commit 3ba5d3b7fd505a444d5d8bdb6dd3595e5aa79aa2
| |\  Merge: 89bf991 dba50f2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 29 03:35:46 2011 -0700
| | | 
| | |     Merge pull request #246 from karlnapf/master
| | |     
| | |     example corrections
| | |    
| | * commit dba50f2be70b444ea53778284c06ad878bcff047
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Fri Jul 29 11:31:23 2011 +0200
| |   
| |       -made search space smaller
| |       -removed stuff from stacdk to heap to be able to trace memory blocks
| |       -cleaned up comments
| |   
| |   M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
* | commit 035f3cbd443ae6eba756fb7cc609305ad90be90c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 13:30:13 2011 +0200
| | 
| |     fix minimal_test example to work with modshogun
| | 
| | M	examples/undocumented/csharp_modular/minimal_test.cs
| |   
* | commit 2d44753eb5506eb6415c5dfee71e082754cc83fb
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Jul 29 13:29:02 2011 +0200
|   
|       fix compile csharp errors
|       
|       - made read_vector* variables protected such that there is no get_/set_
|       naming clash
|       - use same signature for get_num_vectors() in attributefeatures to fix warning
|   
|   M	src/shogun/features/AttributeFeatures.h
|   M	src/shogun/io/InputParser.h
|  
* commit 89bf991a142d09d55b2e99e171e3e655e0f90e90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 29 10:46:08 2011 +0200
| 
|     introduce SGCachedVector prototype
| 
| M	src/shogun/lib/DataType.h
|    
*   commit 01b3fc30fe6a5a4926c0f750177efe8b7100610a
|\  Merge: 620037e 5ce74be
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 07:42:46 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 5ce74beed864066a3506f85c2a5a1d0251f63e6b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 29 00:13:49 2011 +0400
| | 
| |     Some additions and fixes for NEWS
| | 
| | M	src/NEWS
| |   
* | commit 620037ed381d27a99b8dc2ce304b85fe58a0159d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 00:42:10 2011 +0200
| | 
| |     add single file test
| | 
| | M	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 107276dba7c6f4cb8713b6e81a887f6f8dbada1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 29 00:19:55 2011 +0200
| | 
| |     add a ruby examples check script
| | 
| | A	examples/undocumented/ruby_modular/check.sh
| |   
* | commit 5fab0e0ebf63105c7d92eccb654b3c1cb7fcf8fe
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Jul 28 21:49:30 2011 +0200
|   
|       rename length -> slen to  match SGString change
|   
|   M	src/interfaces/java_modular/swig_typemaps.i
|   M	src/interfaces/lua_modular/swig_typemaps.i
|   M	src/interfaces/octave_modular/swig_typemaps.i
|   M	src/interfaces/r_modular/swig_typemaps.i
|   M	src/interfaces/ruby_modular/swig_typemaps.i
|  
* commit b2464db95dfe09f80c0203452dbe1504f91bad74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 21:30:15 2011 +0200
| 
|     fix compile errors in static interfaces
| 
| M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| M	src/interfaces/matlab_static/MatlabInterface.cpp
| M	src/interfaces/octave_static/OctaveInterface.cpp
| M	src/interfaces/r_static/RInterface.cpp
|  
* commit 1c631698486d9708d10e14f91743d095fa99e01d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 21:29:52 2011 +0200
| 
|     fix compile error in string subset example
| 
| M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
|    
*   commit 4c5fc86f761bd73f1c2423282da496d10de1f2f6
|\  Merge: a45b631 4172a45
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 23:25:50 2011 +0400
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit 4172a4540b588bb845764ab14c3b5f8868e6645d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 21:18:36 2011 +0200
| | 
| |     don't allocate objects on stack (this did evade the memory tracing)
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   
| * commit c8fa3276755a73ff426dd10ecd7ddc3aeeb10dfc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 20:58:55 2011 +0200
| | 
| |     fix compile error in static python interface
| | 
| | M	src/interfaces/python_static/PythonInterface.cpp
| |   
* | commit a45b631cc43de354310f4d3ece5414b9fdd11399
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Thu Jul 28 23:25:17 2011 +0400
|   
|       DSYEVR for LLE
|   
|   M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
|    
*   commit 72b9bef392f25fd1f0971367b0d574359700d112
|\  Merge: 5f296e7 625600e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 11:24:52 2011 -0700
| | 
| |     Merge pull request #245 from karlnapf/master
| |     
| |     model selection for string kernels
| |   
| * commit 625600e3b49f7ae97a665ad630d1fda88b4a5c3a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:44:26 2011 +0200
| | 
| |     added more meaningful not implemented message
| | 
| | M	src/shogun/features/Features.h
| |   
| * commit 4bfd1b6c29b2220209a5f7c6e0cb35e57c096a15
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:39:28 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| |   
| * commit f19b158af48a2a5ab247d3cb7fe3c954d19f47c4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:39:04 2011 +0200
| | 
| |     renamed example
| | 
| | A	examples/undocumented/python_modular/modelselection_grid_search_linear_modular.py
| | D	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| |   
| * commit b0c7e3348e4d4ef02b7d74abe005cc3929b23c6e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:30:51 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| |   
| * commit ace078bfb20041708aff0d91f06ca43ba4e84181
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:22:22 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/interfaces/python_modular/swig_typemaps.i
| |   
| * commit 1f1939eab22cad23e04ca2245335b75fdeaeabc2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 18:11:32 2011 +0200
| | 
| |     made example smaller
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
| * commit bf37785f24b88aa24c117841631954c6280ec1bc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:37:12 2011 +0200
| | 
| |     made example work
| | 
| | M	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| |   
| * commit 66e0302cee13d6af04a8714876e6124ff8cf2e09
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:24:54 2011 +0200
| | 
| |     added example of grid search using a string kernel
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/modelselection_grid_search_string_kernel.cpp
| |   
| * commit e72835a056db2f3995ac75cbcd602944bb15eecb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 17:23:42 2011 +0200
| | 
| |     added test for copy_subset on StringFeatures
| | 
| | M	examples/undocumented/libshogun/Makefile
| | A	examples/undocumented/libshogun/features_copy_subset_string_features.cpp
| |   
| * commit 46f5ff5e2b2c1bd7458c044add08807ae8f87e1e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:46:18 2011 +0200
| | 
| |     undone changes according to chat with soeren
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit 257c54d8a3bbecefb24126772a59603578606285
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:19:55 2011 +0200
| | 
| |     white space change
| | 
| | M	src/shogun/features/Subset.cpp
| |   
| * commit 3e5ce23993394e788ae00d271a34812ee720718a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 16:11:31 2011 +0200
| | 
| |     -more fixes towards working copy_subset method
| |     -get_feature_vector now returns a copy of an SGString with do_free=true
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit e1a4965d0e929493978f5495dd0bcbc4b08b4736
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:48:24 2011 +0200
| | 
| |     fix compile error
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit 5a777a66a81bdbacfc6f2911083103a9a123e437
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:47:32 2011 +0200
| | 
| |     removed unnecessary logcal check
| | 
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   
| * commit 32476c995e4064365c3dc8936b17832ddfc3a83a
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:47:20 2011 +0200
| | 
| |     copy_subset did not really copy data but reference ->memerror. fixed
| | 
| | M	src/shogun/features/StringFeatures.h
| |   
| * commit e62c95415ae29fdd20539c335692f84d897e5acb
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:46:49 2011 +0200
| | 
| |     removed display method (have to think about this some more)
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit f27ace85e966d09323d581d1768e71ca1e1713a7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:29:10 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/features/StringFileFeatures.h
| |   
| * commit 9fdee0d0cdb36333d3885f4080d1be304f9f0ac9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:14:48 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/features/StreamingStringFeatures.h
| |   
| * commit 95d79b28db086f6ed82956dd55a04780eed4a0d8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:12:17 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/base/Parameter.cpp
| |   
| * commit ec4c2106253ca38f9053a25e866903f5e8fa1f23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:10:13 2011 +0200
| | 
| |     renamed SGVector::length to slen
| | 
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| |   
| * commit 250b0023d9316ece17d3596acdf83d8fcef1cadf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:04:58 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/AsciiFile.cpp
| |   
| * commit 6e2a26082d229082902a4560a4fccc4ee1cda765
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:04:03 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/BinaryFile.cpp
| |   
| * commit 3cc585a5df97311aeb7ac83c15a12d82f3393ae1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:03:10 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/io/File.cpp
| |   
| * commit db0295d210db6124c8866166f97129b3f0809618
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:02:03 2011 +0200
| | 
| |     renamed SGString::length to slen
| | 
| | M	src/shogun/ui/SGInterface.cpp
| |   
| * commit ef6032885285a79f4d0b0283bea6b18ea95f3c5e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:01:25 2011 +0200
| | 
| |     renamed SGString.length to slen
| |     added display method for SGString
| | 
| | M	src/shogun/lib/DataType.h
| |   
| * commit 5737a842e8bd99554881c86be700b8dd66aa922d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 15:01:08 2011 +0200
| | 
| |     renamed length field of SGString to slen
| | 
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/ui/GUIFeatures.cpp
| |   
| * commit c48b1312a826a4d6708ff6dbe3aeed5d14d35b72
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jul 28 13:34:54 2011 +0200
| | 
| |     work towards supporting model storage
| | 
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/DistanceMachine.h
| |   
| * commit dca186c2fd828dbcfdf805dabd7a2f9ecce47c3b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 18:05:48 2011 +0200
| | 
| |     usage of SG_FREE instead of delete
| | 
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| |   
| * commit 4cfabaa75174d23dd4e9a8d357f706b6a1eaf992
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 18:03:59 2011 +0200
| | 
| |     SGVector usage
| | 
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/KNN.h
| |   
| * commit 070b2c290299c273ddbaa95689478bffc4b43cca
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jul 27 17:55:21 2011 +0200
| | 
| |     removed unnecessary ASSERT
| | 
| | M	src/shogun/classifier/KNN.cpp
| |   
| * commit e8934c6c3d6cce90c322d1b40a259d5dbd539219
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Wed Jul 27 17:53:13 2011 +0200
|   
|       removed unnecessary ASSERTs
|   
|   M	src/shogun/classifier/KNN.cpp
|  
* commit 5f296e7885667071409c47300c54b67bb1f7991d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 28 17:06:30 2011 +0200
| 
|     print leaks on exit when configure with --enable-trace-mallocs and do
|     proper cleanup
| 
| M	src/shogun/base/DynArray.h
| M	src/shogun/base/init.cpp
|    
*   commit d3602de6dc7b55ba0bb8142cf700dcd0664c9f2d
|\  Merge: 8bc3d93 a57a098
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 28 03:37:36 2011 -0700
| | 
| |     Merge pull request #244 from sploving/master
| |     
| |     add some ruby examples
| |   
| * commit a57a098fda4d2a21c20af2a07b56b3ba6eefb16a
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:57:35 2011 +0800
| | 
| |     add kernel_gaussian_modular.rb
| | 
| | A	examples/undocumented/ruby_modular/kernel_gaussian_modular.rb
| |   
| * commit eb2cd3b7fff35211769564ae999dcd25c1aeeaa1
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:57:01 2011 +0800
| | 
| |     add kernel_comm_word_string_modular.rb example
| | 
| | A	examples/undocumented/ruby_modular/kernel_comm_word_string_modular.rb
| |   
| * commit 216347d82db319ba724d720e92ec82791e2907c1
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:55:14 2011 +0800
| | 
| |     add load.rb file
| | 
| | A	examples/undocumented/ruby_modular/load.rb
| |   
| * commit 485e7bde75ef0214b48b27afb10e5bcf6e60ffdf
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 15:25:55 2011 +0800
| | 
| |     add kerenle_comm_ulong_string_modular.rb
| | 
| | A	examples/undocumented/ruby_modular/kernel_comm_ulong_string_modular.rb
| |   
| * commit 4a71946d4f84fe9f220d546ea1698643b9f1d33d
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Thu Jul 28 14:43:40 2011 +0800
| | 
| |     add typecheck for stringlist
| | 
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| |   
* | commit 8bc3d93c5fbb28609d061a7140529e874e3aa7b6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:47:26 2011 +0400
| | 
| |     Cleaned lapack wrappers
| | 
| | M	src/shogun/mathematics/lapack.cpp
| |   
* | commit 0238667449394761a104560c33973a7c02c7975e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:45:09 2011 +0400
| | 
| |     Changed MDS solver to DSYEVR
| | 
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| |   
* | commit 5286e9425b20f0f1dd89365208b8220ad2b4c562
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 28 03:43:40 2011 +0400
| | 
| |     Added wrapper for DSYEVR lapack routine
| | 
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/mathematics/lapack.h
| |     
* |   commit 57066ac8ec89a73253a7a21e8d9f215efb9aae55
|\ \  Merge: 1454579 fc63d7f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 28 00:05:39 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit fc63d7f69f2ba5e38845d5c917a28b2249081949
| |\ \  Merge: ec69179 dbf8677
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jul 27 08:39:20 2011 -0700
| | | | 
| | | |     Merge pull request #243 from karlnapf/master
| | | |     
| | | |     replacement for new
| | | |     
| | * | commit dbf8677d0af2ea7e402daf9cf86ee4f9b6afbf67
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:35:53 2011 +0200
| | | | 
| | | |     moved the store_model_features method from LibLinear to LinearMachine. Now all linear machines support model selection
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | | M	src/shogun/machine/LinearMachine.h
| | | |     
| | * | commit 4820267aaf94fc47ed657e1f1f9d598d957a84fd
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:18:42 2011 +0200
| | | | 
| | | |     made LibLinear support model selection again
| | | | 
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | |     
| | * | commit b5bc9c3257054d93bb0de93e908d0d586e4e6dd6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 17:18:25 2011 +0200
| | | | 
| | | |     added a more meaningfull error message
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 52bcd9c2a79da37bcaff60a0dedc80b3aa9054be
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:44:52 2011 +0200
| | | | 
| | | |     made example smaller and removed set_store_sv_features call (is in CrossValidation now)
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| | * | commit c7587344b47f5b8fceb0a5da8ff99e2662687b85
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:35:14 2011 +0200
| | | | 
| | | |     removed name clash and added forgotten return value
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 4a66e226cf8d4368077e536b826b2825d101cc06
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:34:59 2011 +0200
| | | | 
| | | |     tell machine to store model before starting x-validation
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | |     
| | * | commit 60ec8f566bad9759a46ea8045ba91382849e349b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:28:16 2011 +0200
| | | | 
| | | |     moved store_model flag from CKernelMachine to CMachine
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | | M	src/shogun/machine/KernelMachine.h
| | | | M	src/shogun/machine/Machine.cpp
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit f211b25bc962973df099febbf2d5c4773d151a87
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:19:46 2011 +0200
| | | | 
| | | |     renamed variable
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit 8296a9ac693d1b361483745e7c9b1f458256e72b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:19:35 2011 +0200
| | | | 
| | | |     directly use math.h function
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| | * | commit 872919bd987db95d7275324a95c9a419648d80bc
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:13:55 2011 +0200
| | | | 
| | | |     renamed train_kernel_machine to train_machine due to the method is now defined in CMachine instead of CKernelMachine
| | | | 
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/mkl/MKL.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | M	src/shogun/classifier/svm/LaRank.h
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | M	src/shogun/regression/KRR.cpp
| | | | M	src/shogun/regression/KRR.h
| | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | M	src/shogun/regression/svr/LibSVR.h
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.h
| | | |     
| | * | commit 060555b421f446d4e9f60d90ce0b4d02590669e4
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:13:14 2011 +0200
| | | | 
| | | |     moved model storage code to CMachine
| | | | 
| | | | M	src/shogun/machine/KernelMachine.h
| | | |     
| | * | commit b763c092209e2842fb5720fcef6eec2c7363f14b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 15:12:57 2011 +0200
| | | | 
| | | |     moved train_machine and model storage flag here from KernelMachine
| | | | 
| | | | M	src/shogun/machine/Machine.h
| | | |     
| | * | commit c8ce7adf0edf755347c9a41e9fc45250e2f65685
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:57:00 2011 +0200
| | | | 
| | | |     fixed a failed assertion due to wrong pow method selection when having two integers as arguments
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| | * | commit 436995926e5fe628f47e8f3b597288210d765a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:52:44 2011 +0200
| | | | 
| | | |     Revert "extended pow method to take negative exponents"
| | | |     
| | | |     This reverts commit 473327f146943c1d5d2954fec39f764e6ebafa65.
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| | * | commit 473327f146943c1d5d2954fec39f764e6ebafa65
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 14:51:27 2011 +0200
| | | | 
| | | |     extended pow method to take negative exponents
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
* | | | commit 14545797611459782da964cb59559e79063f3464
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Thu Jul 28 00:03:04 2011 +0200
| | |   
| | |       enable memory tracing when compiled with --enable-trace-mallocs
| | |       just call CSGObject::list_memory_allocs() or list_memory_allocs() if
| | |       you've include lib/memory.h
| | |   
| | |   M	src/shogun/base/DynArray.h
| | |   M	src/shogun/base/SGObject.cpp
| | |   M	src/shogun/base/SGObject.h
| | |   M	src/shogun/base/init.cpp
| | |   M	src/shogun/lib/Set.h
| | |   M	src/shogun/lib/memory.cpp
| | |   M	src/shogun/lib/memory.h
| | |    
* | | commit 0e5b6781c5e6c8a98819a2164012401cdac17c4f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 27 14:44:26 2011 +0200
| | | 
| | |     pow(float, int) now also takes exponents smaller than zero
| | | 
| | | M	src/shogun/mathematics/Math.h
| | |    
* | | commit b4a845225fd354c9a2bfa3293d5b91c3c246b690
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jul 27 14:35:59 2011 +0200
| |   
| |       replaced new by SG_MALLOC
| |   
| |   M	src/shogun/lib/DataType.h
| |   
* | commit ec69179210b7d8f4587de129f3ebb726daeeaf01
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Jul 27 16:21:15 2011 +0400
| | 
| |     Added HLLE and LTSA to swissroll graphical example
| | 
| | M	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| |   
* | commit 34dfe53d8f3ec7eebbfd8cf6cd84aa5317a3ecc2
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Wed Jul 27 16:00:45 2011 +0400
| | 
| |     Removed note about octave crash from FAQ
| | 
| | M	doc/pages/FAQ.mainpage
| |   
* | commit 9df895b9b474c21f6d2486c547a3f5262e8316d5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 27 13:13:56 2011 +0200
| | 
| |     fix mistake in string data type
| | 
| | M	src/shogun/lib/DataType.h
| |     
* |   commit 440c5efb2787654db9db583a44514cef20d8fc81
|\ \  Merge: 7821411 637aa52
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 12:59:36 2011 +0200
| | | 
| | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | |      
| * |   commit 637aa52f782c150393046d9c8de60aac14e3bb04
| |\ \  Merge: 76081df 37dce37
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 12:49:30 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | |       
| | * |   commit 37dce37c4a55c41149d58e630aad3961db826ac3
| | |\ \  Merge: cb70e27 2bd248e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 27 12:19:15 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | |      
| | | * | commit 2bd248ea4837b0d0100f942ab9af72d26f34c680
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | | 
| | | | |     method calls should remain float64, not in integer type
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | |      
| | | * | commit fe4490e47e59122f1b433b67f3b316fb1f6284c9
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | | 
| | | | |     class is now able to take multiple types of values.
| | | | |     currently float64_t and int32_t are implemented
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | | * | commit fd77e3477bbf04f2ddb90b999a2108cbc1c53b55
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:13:19 2011 +0200
| | | | | 
| | | | |     work towards handling of multiple data types
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | | * | commit 965a8ca2a3f75211106153aada1dccdf97fe930d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | | 
| | | | |     print method now handles different data types
| | | | | 
| | | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | |      
| | | * | commit d37a0d4c81f9df5c6cc9742c751fa3ede7a65a9f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | | 
| | | | |     added constructors for SGStringList and SGString
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | | * | commit c3756726f7c7870bc098fbbd146d678c2794edac
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | | 
| | | | |     added copy_subset implementation
| | | | | 
| | | | | M	src/shogun/features/StringFeatures.h
| | | | |      
| | | * | commit 4d1e64ea57d208295b25bad5b6dbfddab2f01da7
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:22 2011 +0200
| | | | | 
| | | | |     added comment
| | | | | 
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | |      
| | * | | commit cb70e27319e6277db67b5ff3174c13767ac80fef
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | | 
| | | | |     method calls should remain float64, not in integer type
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | |      
| | * | | commit c2afee0648f4255631710db70c1dd684650c24a6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | | 
| | | | |     class is now able to take multiple types of values.
| | | | |     currently float64_t and int32_t are implemented
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | * | | commit 9a118f918f5a009c83e794ee3576d90d29394ea4
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 27 12:16:55 2011 +0200
| | | | | 
| | | | |     merge of current upstream
| | | | | 
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | |      
| | * | | commit 53e86bb94103f86c0c53327ff23e16790907cf8b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | | 
| | | | |     print method now handles different data types
| | | | | 
| | | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | |      
| | * | | commit 0322ee178e61518a92c925f69a729f1b3728068d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | | 
| | | | |     added constructors for SGStringList and SGString
| | | | | 
| | | | | M	src/shogun/lib/DataType.h
| | | | |      
| | * | | commit 7d4b026f2da1d0d60637c6446eee5fdcb318f75c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | | 
| | | | |     added copy_subset implementation
| | | | | 
| | | | | M	src/shogun/features/StringFeatures.h
| | | | |      
| | * | | commit 43f699ff4529d6ebf09a1d26a1e6e38ed086d316
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Tue Jul 26 00:06:22 2011 +0200
| | | |   
| | | |       added comment
| | | |   
| | | |   M	src/shogun/features/SimpleFeatures.h
| | | |     
| * | | commit 76081dfa9fc96978575295e7e0a8a7d4db19faba
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | 
| | | |     class is now able to take multiple types of values.
| | | |     currently float64_t and int32_t are implemented
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit 171a0f21887221c81c4bb43c05a64d244f588fb6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 27 12:16:55 2011 +0200
| | | | 
| | | |     merge of current upstream
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit 1e259a959d14ae925aaadbcda6db026cdb058e82
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:25:37 2011 +0200
| | | | 
| | | |     method calls should remain float64, not in integer type
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | |     
| * | | commit 85dbe9ddde75fea583c70c61b2a3fdd4e407cbf3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:24:56 2011 +0200
| | | | 
| | | |     class is now able to take multiple types of values.
| | | |     currently float64_t and int32_t are implemented
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| * | | commit e2c9030e0c33189763e5f1dda9f05fb9565e1623
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:13:19 2011 +0200
| | | | 
| | | |     work towards handling of multiple data types
| | | | 
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | |     
| * | | commit cd32001298a7fdf2216f9225ab29cc159f2fd781
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:12:05 2011 +0200
| | | | 
| | | |     print method now handles different data types
| | | | 
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | |     
| * | | commit 0d06cb4fd96b87f49030a747054c7cff021e7dfb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:06:55 2011 +0200
| | | | 
| | | |     added constructors for SGStringList and SGString
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
| * | | commit cfa2699907cc8a2d923e363bd1a9b31489e7e188
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 26 00:06:39 2011 +0200
| | | | 
| | | |     added copy_subset implementation
| | | | 
| | | | M	src/shogun/features/StringFeatures.h
| | | |     
| * | | commit b358503181d09816525573c811e42141111c1db3
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Tue Jul 26 00:06:22 2011 +0200
| | |   
| | |       added comment
| | |   
| | |   M	src/shogun/features/SimpleFeatures.h
| | |    
* | | commit 7821411c082cab87afb162564431bca82df0d845
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jul 27 10:26:00 2011 +0200
| |   
| |       include GSoC student contributions in NEWS / CONTRIBUTIONS
| |   
| |   M	src/CONTRIBUTIONS
| |   M	src/NEWS
| |     
* |   commit 9bb26bc315ab8d8645391df3ab87c2a3538985d2
|\ \  Merge: 8f5a9eb b61710c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:41:25 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit b61710c72ab5550c7a6b859a1f93e85ff65fc3b4
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 03:03:21 2011 +0400
| | | 
| | |     Fixed HLLE python example and added LTSA one
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| | | A	examples/undocumented/python_modular/preprocessor_localtangentspacealignment_modular.py
| | |    
| * | commit 16acbc2a648c7c522badba20e76849c0107e7ea0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 02:34:05 2011 +0400
| | | 
| | |     SG_CALLOC usage for LLE and HLLE
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
| * | commit 5918132d0383e371969afc9afb7593891bb08ba0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 27 02:32:12 2011 +0400
| | | 
| | |     Introduced Local Tangent Space Alignment preprocessor
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/LocalTangentSpaceAlignment.cpp
| | | A	src/shogun/preprocessor/LocalTangentSpaceAlignment.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit 8f5a9ebd403f0cedd97c21f95f385769ec532a32
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:40:47 2011 +0200
| | | 
| | |     get TRACE_MALLOCS to compile again (but still crashes for some reason)
| | | 
| | | M	src/shogun/base/DynArray.h
| | | M	src/shogun/base/init.cpp
| | | M	src/shogun/lib/Set.h
| | | M	src/shogun/lib/common.h
| | | M	src/shogun/lib/memory.cpp
| | | M	src/shogun/lib/memory.h
| | | M	src/shogun/ui/SGInterface.cpp
| | |    
* | | commit 91c9490d766564d8a82947f5b4cbc362319315b9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 27 01:40:02 2011 +0200
| | | 
| | |     get the ruby examples to work again
| | | 
| | | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | | M	examples/undocumented/ruby_modular/VectorTest.rb
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | | M	examples/undocumented/ruby_modular/minimal_test.rb
| | |    
* | | commit 1a6d8f2a1dbc6ea95687bb6f17266d96f091f8d9
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Tue Jul 26 23:43:47 2011 +0200
| |   
| |       hide makefile generation
| |   
| |   M	src/Makefile
| |   
* | commit 8431a6db403e11a7b0b678bb348ba5a35b70e0b6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:58:06 2011 +0200
| | 
| |     examples all run trough nicely, so rename SG_MALLOCX -> SG_MALLOC
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | M	examples/undocumented/libshogun/library_indirect_object.cpp
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/lua_modular/swig_typemaps.i
| | M	src/interfaces/matlab_static/MatlabInterface.cpp
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_modular/swig_typemaps.i
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/CustomDistance.h
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Distribution.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/BinaryFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/Compressor.cpp
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/DecompressString.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| | M	src/shogun/preprocessor/NormOne.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/preprocessor/SortUlongString.cpp
| | M	src/shogun/preprocessor/SortWordString.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIFeatures.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit c362c79ce940ad626d95618ffae9e4ef28af97b0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:56:10 2011 +0200
| | 
| |     translate new T[size] -> SG_MALLOCX(T, size)
| | 
| | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | M	examples/undocumented/libshogun/kernel_revlin.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/library_indirect_object.cpp
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | M	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/csharp_modular/swig_typemaps.i
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/lua_modular/swig_typemaps.i
| | M	src/interfaces/matlab_static/MatlabInterface.cpp
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_modular/swig_typemaps.i
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/CustomDistance.h
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Distribution.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/BinaryFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.h
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/Compressor.cpp
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/DecompressString.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/LogPlusOne.cpp
| | M	src/shogun/preprocessor/NormOne.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/preprocessor/SortUlongString.cpp
| | M	src/shogun/preprocessor/SortWordString.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIClassifier.cpp
| | M	src/shogun/ui/GUIFeatures.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit 9da4005b912c6a3d3f316bde31905e53f8aee80b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:11:48 2011 +0200
| | 
| |     new[] -> SG_MALLOC: change a few difficult to automagically convert cases
| | 
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| |   
* | commit dacdc4b99e49f15bfc1019e8ab7f339a6b034c1a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 22:05:32 2011 +0200
| | 
| |     start to replace new[] with SG_MALLOC
| | 
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| |   
* | commit 8c838b849a588c67714d4c4920383337137f0b79
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:34:52 2011 +0200
| | 
| |     don't make the weights const
| | 
| | M	src/shogun/lib/Trie.h
| |   
* | commit 74ee7d0bc1d23e86398db221cdb2e9791b02c36b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:19:19 2011 +0200
| | 
| |     replace delete[] with SG_FREE() also in examples
| | 
| | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | M	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | M	examples/undocumented/libshogun/library_dyn_int.cpp
| | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
* | commit ecae80dc13ad9f8746d069c4299bfde226994933
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 20:17:17 2011 +0200
| | 
| |     replace delete[] with SG_FREE()
| | 
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/interfaces/java_modular/swig_typemaps.i
| | M	src/interfaces/octave_static/OctaveInterface.cpp
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/interfaces/python_static/PythonInterface.cpp
| | M	src/interfaces/r_static/RInterface.cpp
| | M	src/interfaces/ruby_modular/swig_typemaps.i
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/base/Parameter.cpp
| | M	src/shogun/classifier/AveragedPerceptron.cpp
| | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/LDA.cpp
| | M	src/shogun/classifier/LPBoost.cpp
| | M	src/shogun/classifier/LPM.cpp
| | M	src/shogun/classifier/Perceptron.cpp
| | M	src/shogun/classifier/PluginEstimate.cpp
| | M	src/shogun/classifier/SubGradientLPM.cpp
| | M	src/shogun/classifier/mkl/MKL.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | M	src/shogun/classifier/svm/GMNPLib.cpp
| | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | M	src/shogun/classifier/svm/GNPPLib.cpp
| | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/LibSVM.cpp
| | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | M	src/shogun/classifier/svm/MPDSVM.cpp
| | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | M	src/shogun/classifier/svm/SGDQN.cpp
| | M	src/shogun/classifier/svm/SVM.cpp
| | M	src/shogun/classifier/svm/SVMLight.cpp
| | M	src/shogun/classifier/svm/SVMLin.cpp
| | M	src/shogun/classifier/svm/SVMOcas.cpp
| | M	src/shogun/classifier/svm/SVMSGD.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/SVM_linear.cpp
| | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | M	src/shogun/classifier/svm/Tron.cpp
| | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/classifier/svm/ssl.cpp
| | M	src/shogun/clustering/GMM.cpp
| | M	src/shogun/clustering/Hierarchical.cpp
| | M	src/shogun/clustering/KMeans.cpp
| | M	src/shogun/distance/CustomDistance.cpp
| | M	src/shogun/distance/Distance.cpp
| | M	src/shogun/distance/Distance.h
| | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | M	src/shogun/distributions/Gaussian.cpp
| | M	src/shogun/distributions/HMM.cpp
| | M	src/shogun/distributions/Histogram.cpp
| | M	src/shogun/distributions/LinearHMM.cpp
| | M	src/shogun/distributions/PositionalPWM.cpp
| | M	src/shogun/evaluation/CrossValidation.cpp
| | M	src/shogun/evaluation/PRCEvaluation.cpp
| | M	src/shogun/evaluation/ROCEvaluation.cpp
| | M	src/shogun/features/CombinedDotFeatures.cpp
| | M	src/shogun/features/CombinedDotFeatures.h
| | M	src/shogun/features/DotFeatures.cpp
| | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | M	src/shogun/features/FKFeatures.cpp
| | M	src/shogun/features/Features.cpp
| | M	src/shogun/features/HashedWDFeatures.cpp
| | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | M	src/shogun/features/Labels.cpp
| | M	src/shogun/features/PolyFeatures.cpp
| | M	src/shogun/features/RealFileFeatures.cpp
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/SparseFeatures.h
| | M	src/shogun/features/SparsePolyFeatures.cpp
| | M	src/shogun/features/StreamingSparseFeatures.h
| | M	src/shogun/features/StreamingStringFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/features/StringFileFeatures.h
| | M	src/shogun/features/Subset.cpp
| | M	src/shogun/features/TOPFeatures.cpp
| | M	src/shogun/features/WDFeatures.cpp
| | M	src/shogun/io/AsciiFile.cpp
| | M	src/shogun/io/File.cpp
| | M	src/shogun/io/HDF5File.cpp
| | M	src/shogun/io/InputParser.h
| | M	src/shogun/io/ParseBuffer.h
| | M	src/shogun/io/SerializableHdf5File.cpp
| | M	src/shogun/io/SimpleFile.h
| | M	src/shogun/io/StreamingAsciiFile.cpp
| | M	src/shogun/kernel/ANOVAKernel.cpp
| | M	src/shogun/kernel/AUCKernel.cpp
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommWordStringKernel.cpp
| | M	src/shogun/kernel/CustomKernel.cpp
| | M	src/shogun/kernel/DiceKernelNormalizer.h
| | M	src/shogun/kernel/GaussianKernel.cpp
| | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | M	src/shogun/kernel/Kernel.cpp
| | M	src/shogun/kernel/Kernel.h
| | M	src/shogun/kernel/LinearKernel.cpp
| | M	src/shogun/kernel/LinearStringKernel.cpp
| | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/OligoStringKernel.cpp
| | M	src/shogun/kernel/PyramidChi2.cpp
| | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | M	src/shogun/lib/BitString.h
| | M	src/shogun/lib/Cache.h
| | M	src/shogun/lib/DataType.h
| | M	src/shogun/lib/DynamicArray.h
| | M	src/shogun/lib/DynamicObjectArray.h
| | M	src/shogun/lib/GCArray.h
| | M	src/shogun/lib/Trie.cpp
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/machine/DistanceMachine.cpp
| | M	src/shogun/machine/KernelMachine.cpp
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/machine/LinearMachine.cpp
| | M	src/shogun/machine/LinearMachine.h
| | M	src/shogun/machine/OnlineLinearMachine.cpp
| | M	src/shogun/machine/OnlineLinearMachine.h
| | M	src/shogun/mathematics/Cplex.cpp
| | M	src/shogun/mathematics/Math.cpp
| | M	src/shogun/mathematics/Math.h
| | M	src/shogun/mathematics/arpack.cpp
| | M	src/shogun/mathematics/lapack.cpp
| | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | M	src/shogun/modelselection/ParameterCombination.cpp
| | M	src/shogun/preprocessor/ClassicMDS.cpp
| | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/Isomap.cpp
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | M	src/shogun/preprocessor/PCA.cpp
| | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | M	src/shogun/regression/KRR.cpp
| | M	src/shogun/regression/svr/LibSVR.cpp
| | M	src/shogun/regression/svr/SVRLight.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| | M	src/shogun/structure/Plif.cpp
| | M	src/shogun/structure/Plif.h
| | M	src/shogun/structure/PlifMatrix.cpp
| | M	src/shogun/ui/GUIHMM.cpp
| | M	src/shogun/ui/GUIKernel.cpp
| | M	src/shogun/ui/GUIStructure.h
| | M	src/shogun/ui/SGInterface.cpp
| |   
* | commit cc045e9cfb9e08c439f5fad300c81a6623661c92
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 26 19:52:18 2011 +0200
| | 
| |     Introduce new SG_MALLOC/REALLOC/CALLOC macros calling sg_malloc etc but
| |     have the type information as first argument. Change all of shogun to use
| |     these new macros.
| | 
| | M	src/interfaces/octave_modular/swig_typemaps.i
| | M	src/interfaces/python_modular/swig_typemaps.i
| | M	src/shogun/base/DynArray.h
| | M	src/shogun/classifier/KNN.cpp
| | M	src/shogun/classifier/svm/LaRank.cpp
| | M	src/shogun/classifier/svm/LibLinear.cpp
| | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | M	src/shogun/classifier/svm/gpdt.cpp
| | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | M	src/shogun/classifier/svm/gpm.cpp
| | M	src/shogun/classifier/svm/pr_loqo.cpp
| | M	src/shogun/features/Alphabet.h
| | M	src/shogun/features/SNPFeatures.cpp
| | M	src/shogun/features/SimpleFeatures.h
| | M	src/shogun/features/StreamingDotFeatures.h
| | M	src/shogun/features/StringFeatures.h
| | M	src/shogun/kernel/CombinedKernel.cpp
| | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | M	src/shogun/kernel/LinearKernel.h
| | M	src/shogun/kernel/SNPStringKernel.cpp
| | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/shogun/lib/Array.h
| | M	src/shogun/lib/Trie.h
| | M	src/shogun/lib/memory.cpp
| | M	src/shogun/lib/memory.h
| | M	src/shogun/machine/KernelMachine.h
| | M	src/shogun/preprocessor/KernelPCACut.cpp
| | M	src/shogun/structure/DynProg.cpp
| | M	src/shogun/structure/IntronList.cpp
| |     
* |   commit 0370104d67d2da5f5fd734d984459700354ac190
|\ \  Merge: e0df385 f8fba71
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 20:55:39 2011 +0400
| | | 
| | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | |    
| * | commit f8fba71e0d82189adb15a49df3003013a6d54396
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue Jul 26 20:53:00 2011 +0400
| | | 
| | |     Fix fatal bug
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | |      
* | |   commit e0df3851f64846855e56dde8e2092f22e0ef6977
|\ \ \  Merge: 08e35cf 72b9f6c
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Tue Jul 26 20:12:29 2011 +0400
| | |   
| | |       Merge branch 'master' of git://github.com/gsomix/shogun
| | |    
| * | commit 72b9f6c797f73f1f83007de84c5f4b5a0e6cb118
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Tue Jul 26 20:08:58 2011 +0400
| | | 
| | |     Added get_key function for Fibonacci heap
| | | 
| | | M	src/shogun/lib/FibonacciHeap.cpp
| | | M	src/shogun/lib/FibonacciHeap.h
| | |    
* | | commit 08e35cf3e7d080c3469a412458013fae92d86274
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 18:50:00 2011 +0400
| | | 
| | |     Moved isomap_distance to .cpp
| | | 
| | | A	src/shogun/preprocessor/Isomap.cpp
| | | M	src/shogun/preprocessor/Isomap.h
| | |      
* | |   commit 6536a37bdeed738599eb1a3d1206878886f470aa
|\ \ \  Merge: 6ffbbae e79b597
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 06:24:07 2011 -0700
| | | | 
| | | |     Merge pull request #237 from sploving/master
| | | |     
| | | |     splite SGVector<char> from other types, since there is no char type in lua, we need use one-len string in lua to map a char in C
| | | |     
| * | | commit e79b5978ee002a6c210cb9312ad913503b47deee
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 21:08:16 2011 +0800
| | | | 
| | | |     splite SGVector<char> from other types, since there is no char type in lua, we need use one-len string in lua to map a char in C
| | | | 
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit 6ffbbae774955b7de9e581b1718b8479823b9eb2
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 14:36:25 2011 +0200
| | | | 
| | | |     fix python out typemap for strings
| | | | 
| | | | M	src/interfaces/python_modular/swig_typemaps.i
| | | |     
* | | | commit 595aee74bcf5dd8bfec404d6a36b87b4269cbc03
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 13:43:02 2011 +0200
| | | | 
| | | |     Introduce destroy_vector/matrix. This function should be called only be
| | | |     the 'owner' of the vector/matrix object.
| | | | 
| | | | M	src/shogun/lib/DataType.h
| | | |     
* | | | commit 5ee1b7e12b32b6da3ddfc81c24197fb95ea77f75
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 13:42:30 2011 +0200
| | | | 
| | | |     fix ruby linkflags
| | | | 
| | | | M	src/configure
| | | |     
* | | | commit 19b3616126b6507227003aff3753a7c075d632e9
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 26 13:41:40 2011 +0200
| | |   
| | |       take care of dealloc of python objects in python typemaps and remove unused functions
| | |   
| | |   M	src/interfaces/python_modular/swig_typemaps.i
| | |    
* | | commit 2387fee9f7071e46aaf9c70e4171dfb870473c4f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 26 12:33:24 2011 +0200
| | | 
| | |     fix compile failure w/o arpack
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |      
* | |   commit c9e1279f9fb46924a77d276ca155a1a20acbf912
|\ \ \  Merge: cb17d3a c4fc6c5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 03:23:45 2011 -0700
| | | | 
| | | |     Merge pull request #236 from sploving/master
| | | |     
| | | |     support ruby narray library
| | | |     
| * | | commit c4fc6c56b4039b949f0a939559a46ebad65c0662
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 18:19:40 2011 +0800
| | | | 
| | | |     support ruby narray library
| | | | 
| | | | M	src/interfaces/ruby_modular/swig_typemaps.i
| | | |       
* | | |   commit cb17d3ad839c39d942986d5955d165151e77482d
|\ \ \ \  Merge: 93a63c7 0654cea
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 26 03:18:41 2011 -0700
| | | |   
| | | |       Merge pull request #235 from sploving/master
| | | |       
| | | |       support lua sgvector<char>
| | | |     
| * | | commit 0654cead46731267087bad0b73baf5f51e5d7ac5
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 26 18:10:34 2011 +0800
| | | | 
| | | |     support SGVector<char>
| | | | 
| | | | M	examples/undocumented/lua_modular/features_string_char_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit 93a63c749ac5994478b04611d696a6cc73eb8076
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 26 11:28:04 2011 +0200
| | | | 
| | | |     add ruby narray detection in configure
| | | | 
| | | | M	src/configure
| | | |       
* | | |   commit 16fc2a1b93f5e2121524a6d468a6f972b2f2d8c2
|\ \ \ \  Merge: 05427ed f5b05f4
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | /   Date:   Tue Jul 26 02:27:45 2011 -0700
| |_|/    
|/| |         Merge pull request #234 from sploving/master
| | |         
| | |         add lua string features modular
| | |    
| * | commit f5b05f473c275c9cc78d2d102ee8101c80fac3cb
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jul 26 16:39:20 2011 +0800
| | | 
| | |     add string features lua example
| | | 
| | | A	examples/undocumented/lua_modular/features_string_char_modular.lua
| | |    
* | | commit 05427edcff160e1241f9b9b8ad6674e8fc7b31cc
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:39:48 2011 +0400
| | | 
| | |     Changed solver for LLE and removed unnecessary default parameter
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit e11c4bcfcfab8163380b8c13933aaa3bc9d171a3
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:35:16 2011 +0400
| | | 
| | |     Improved HLLE
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | |    
* | | commit 1fff667d78a71a7ab8fd3c0ab9ca303ef8502359
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:33:05 2011 +0400
| | | 
| | |     Improved stability of Locally Linear Embedding
| | | 
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit ac722b7fafeb94352f855b66dbfe66aca0cdd509
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:32:00 2011 +0400
| | | 
| | |     Improved arpack wrapper
| | | 
| | | M	src/shogun/mathematics/arpack.cpp
| | |    
* | | commit 053c634fce544b1efb1b2141826dc5d4d7ba3ad7
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 26 00:30:26 2011 +0400
| | | 
| | |     Added some more filetypes to ignore by git
| | | 
| | | M	.gitignore
| | |    
* | | commit 9ff99546af4be84dfc1c079b4318f29e7b729735
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 23:05:48 2011 +0400
| | | 
| | |     Added force_lapack option for Locally Linear Embedding and forced HLLE to use lapack solver
| | | 
| | | M	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | |    
* | | commit fe563a7c46e90eace5ec4177ab458883510986db
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 20:50:42 2011 +0200
| | | 
| | |     fix documentation for ALPHANUM and PROTEIN alphabets (they take upper
| | |     case chars not lowercase)
| | | 
| | | M	src/shogun/features/Alphabet.h
| | |    
* | | commit 179091b1af287374bc754b852f2a833321e8704e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:41:25 2011 +0400
| | | 
| | |     Fixed LLE and added HLLE python modular example
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_hessianlocallylinearembedding_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | |    
* | | commit 988360ca58dfa56181aedb7cb7781b7d64ee0a3d
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:37:11 2011 +0400
| | | 
| | |     Introduced Hessian Locally Linear Embedding preprocessor
| | | 
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/shogun/preprocessor/HessianLocallyLinearEmbedding.cpp
| | | A	src/shogun/preprocessor/HessianLocallyLinearEmbedding.h
| | | M	src/shogun/preprocessor/Preprocessor.h
| | |    
* | | commit bcb7bb8f5a965e5eb7e51f7c158a4015411f5cf5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 20:35:49 2011 +0400
| | | 
| | |     Added DORGQR routine wrapper for lapack
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |    
* | | commit 00d57d584f283a8ed9512f97e74b6a8413b7b662
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:45:12 2011 +0200
| | | 
| | |     fix clustering example
| | | 
| | | M	examples/undocumented/python_modular/clustering_gmm_modular.py
| | |      
* | |   commit b3b2501e0a626e1dbf1cde9f83153c2ca6f61249
|\ \ \  Merge: 58fd62c e9d4632
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 25 17:35:39 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit e9d463232d97ebb290e9db25ae31905469c22acf
| |\ \ \  Merge: f70a405 ad8130a
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Jul 25 02:47:16 2011 -0700
| | | |   
| | | |       Merge pull request #232 from sploving/master
| | | |       
| | | |       fix matrix typemap(columns first then rows)
| | | |     
| | * | commit ad8130a578f008d729f4f2525b83631b52ba4620
| |/ /  Author: Baozeng Ding <sploving1@gmail.com>
| | |   Date:   Mon Jul 25 17:21:30 2011 +0800
| | |   
| | |       fix matrix typemap(columns first then rows)
| | |   
| | |   M	src/interfaces/lua_modular/swig_typemaps.i
| | |    
* | | commit 58fd62cc8e2765e82b9e4fc5926603942355d47e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:33:24 2011 +0200
| | | 
| | |     various bugfixes related to SGVector/SGMatrix transition
| | |     
| | |     - in out typemap of python_modular for vectors
| | |     - in simplefeatures set_feature_matrix
| | |     - KRR double free
| | |      ...
| | | 
| | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | M	src/interfaces/modular/SGBase.i
| | | M	src/interfaces/python_modular/swig_typemaps.i
| | | M	src/shogun/base/SGObject.cpp
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/features/SimpleFeatures.h
| | | M	src/shogun/machine/LinearMachine.cpp
| | | M	src/shogun/regression/KRR.cpp
| | |    
* | | commit d2f13fb17d3f9998af1a175dfd4e2bea4544fb3d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 17:28:48 2011 +0200
| | | 
| | |     add example to just serialize matrix
| | | 
| | | A	examples/undocumented/python_modular/serialization_matrix_modular.py
| | |    
* | | commit d85cb655161d037c2d0a0c2f0970f44de3a9e131
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 25 14:00:49 2011 +0200
| | | 
| | |     remove unused confidences from labels and add SGVector in methods
| | |     utilizing labels when possible
| | | 
| | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | M	src/shogun/classifier/GaussianNaiveBayes.h
| | | M	src/shogun/classifier/KNN.cpp
| | | M	src/shogun/classifier/LDA.cpp
| | | M	src/shogun/classifier/Perceptron.cpp
| | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | M	src/shogun/classifier/svm/libqp_splx.cpp
| | | M	src/shogun/clustering/GMM.cpp
| | | M	src/shogun/distributions/HMM.cpp
| | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | M	src/shogun/features/Labels.cpp
| | | M	src/shogun/features/Labels.h
| | | M	src/shogun/kernel/AUCKernel.cpp
| | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | M	src/shogun/machine/LinearMachine.cpp
| | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | M	src/shogun/regression/KRR.cpp
| | |    
* | | commit 1083498b7d9c95c7c9adbca1d5156cc03ef5573b
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 25 10:33:24 2011 +0200
| |   
| |       start transition of label to use SGVector
| |   
| |   M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| |   M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.cpp
| |   M	src/shogun/classifier/svm/SVMOcas.h
| |   M	src/shogun/features/Labels.cpp
| |   M	src/shogun/features/Labels.h
| |   
* | commit f70a4056edbfef3e3070a99a787331c591b7d321
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 25 01:42:28 2011 +0400
| | 
| |     Fixed load matrix for java modular
| | 
| | M	examples/undocumented/java_modular/Load.java
| |   
* | commit 480b7177dab18f8844fdd44a2c28c8023aa49549
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 25 01:30:42 2011 +0400
| | 
| |     Fixed load.py
| | 
| | M	examples/undocumented/python_modular/tools/load.py
| |     
* |   commit 020d90962a1ff71ab4a67e7b689f4c50dbae1fce
|\ \  Merge: d8c70f9 a844225
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 24 23:09:05 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit a8442259d8ac93013e54eb86148d94b76fa159fa
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:19:54 2011 +0400
| | | 
| | |     Removed unnecessary println at landmark isomap java example
| | | 
| | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | |    
| * | commit c1bbc5df97c100500f386a85c40b4e5976bec7f3
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:18:45 2011 +0400
| | | 
| | |     Split isomap java example
| | | 
| | | M	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | D	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | |    
| * | commit 32df164cd0a76b87248fef5e9cca2bcdcd15d4a0
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jul 25 00:15:21 2011 +0400
| | | 
| | |     Replaced simple features java test with one
| | | 
| | | D	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | D	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | M	examples/undocumented/java_modular/features_simple_modular.java
| | | D	examples/undocumented/java_modular/features_simple_real_modular.java
| | |      
| * |   commit 4a479cce25911d1de3477babd7c9d288e7e0b6c9
| |\ \  Merge: 8d1fa89 a75874e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jul 25 00:11:59 2011 +0400
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit 8d1fa89dc2980b3d42939655800d159f886410ea
| |\ \ \  Merge: 36d16cf 96ba02b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Jul 24 17:08:50 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 36d16cf37317b5b2a7761f6c8fbc621a236a22a9
| |\ \ \ \  Merge: cdc1dc6 bb39c2f
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Jul 24 15:19:26 2011 +0400
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/gsomix/shogun
| | | | | |       
* | | | | | commit d8c70f99ee09ace4bca8c8d192997e60ada519d6
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Jul 24 23:08:09 2011 +0200
| | | | |   
| | | | |       fix loading of matrices (we now have one example per line - no longer
| | | | |       		one per column)
| | | | |   
| | | | |   M	examples/undocumented/python_modular/tools/load.py
| | | | |        
* | | | |   commit a75874e61e7719575310acc46bb68df5134a26e3
|\ \ \ \ \  Merge: 96ba02b 74f3665
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Jul 24 11:35:37 2011 -0700
| | | | |   
| | | | |       Merge pull request #231 from alesis/gmm
| | | | |       
| | | | |       Important EM bug fix and nice examples
| | | | |      
| * | | | commit 74f3665bb02bf1ad2240471acd3d76994023746b
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Jul 24 18:13:40 2011 +0100
| | | | | 
| | | | |     A more illustrative example of SMEMs effect.
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | | |      
| * | | | commit 220e8bf4829ddc1203abd613281d01d4ea9c7a7a
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Jul 24 18:02:29 2011 +0100
| | | | | 
| | | | |     Bug fixes for Gaussian and example
| | | | | 
| | | | | M	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | | | M	src/shogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 81c0c6de0de7fbf69ef6e16ce6aba4a62a094bb3
|/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | |   Date:   Sun Jul 24 09:19:59 2011 +0100
| | | |   
| | | |       Small example changes
| | | |   
| | | |   M	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | |       
* | | |   commit 96ba02b9a7073d8a4b8acd943b447a1bd37c9ca9
|\ \ \ \  Merge: cdc1dc6 1ba5573
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | /   Date:   Sun Jul 24 06:06:04 2011 -0700
| | |/    
| |/|         Merge pull request #230 from gsomix/master
| | |         
| | |         Implemented Fibonacci heap.
| | |    
| * | commit 1ba5573b2f2c3d06af937d0da92a3804156c423d
| |/  Author: Evgeniy Andreev <gsomix@gmail.com>
| |   Date:   Sun Jul 24 15:30:51 2011 +0400
| |   
| |       Some fixes.
| |   
| |   M	src/shogun/lib/FibonacciHeap.cpp
| |   M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit bb39c2f33cd6e1d8301fd98e097581236a12de07
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sun Jul 24 15:13:08 2011 +0400
| | 
| |     Some fixes.
| | 
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit 194468a2e9867b9aa5645edaabe70c951f2e6da0
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Sun Jul 24 15:02:34 2011 +0400
| | 
| |     Rewritten and added CFibonacciHeap class.
| | 
| | M	src/shogun/lib/FibonacciHeap.cpp
| | M	src/shogun/lib/FibonacciHeap.h
| |   
| * commit dcea2d6401fa91d51ad71e445920e806a6f4a09a
| | Author: Evgeniy Andreev <gsomix@gmail.com>
| | Date:   Tue Jul 19 10:42:34 2011 +0400
| | 
| |     Renamed some files.
| | 
| | D	src/libshogun/lib/FibonacciHeap.cpp
| | D	src/libshogun/lib/FibonacciHeap.h
| | A	src/shogun/lib/FibonacciHeap.cpp
| | A	src/shogun/lib/FibonacciHeap.h
| |     
| *   commit b00c496e964aeaff32353fb11109a03790c66d2d
| |\  Merge: 1dbb5bf d67fba1
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Mon Jul 18 23:51:14 2011 +0400
| | | 
| | |     Merge branch 'master' of git://github.com/shogun-toolbox/shogun
| | |    
| * | commit 1dbb5bfe1d4eb095d1d048a92016b8c1af1c1a38
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 23:10:11 2011 +0400
| | | 
| | |     Implemented Fibonacci heap
| | | 
| | | A	src/libshogun/lib/FibonacciHeap.cpp
| | | A	src/libshogun/lib/FibonacciHeap.h
| | |    
* | | commit cdc1dc6ae1467816896f449cb98d871feede8f2f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 24 11:57:50 2011 +0200
| | | 
| | |     mention modular interfaces at the top and static ones below
| | | 
| | | M	README
| | |      
* | |   commit a6e9a4a0b386ac2d9abef5bcbda74d1f943cfdd7
|\ \ \  Merge: 1db16d9 fc4baa4
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jul 24 02:46:03 2011 -0700
| | | | 
| | | |     Merge pull request #229 from alesis/gmm
| | | |     
| | | |     SMEM for GMM
| | | |     
| * | | commit fc4baa4e08676a1501b5a244cb3c16dd7392d9a1
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 24 09:08:11 2011 +0100
| | | | 
| | | |     Added SMEM GMM examples
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/smem_1d_gmm.py
| | | | A	examples/undocumented/python_modular/graphical/smem_2d_gmm.py
| | | |     
| * | | commit 104f0f0ee5e23d95562fa7bd21b69b0da230fd91
| | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | Date:   Sun Jul 24 08:11:59 2011 +0100
| | | | 
| | | |     Some memory leaks and general fixes. Mostly works now.
| | | | 
| | | | M	src/shogun/clustering/GMM.cpp
| | | |     
| * | | commit 8af741f5fb1f39d97ddbbd4fce3810a2c953f07f
|/ / /  Author: Alesis Novik <alesisnov@gmail.com>
| | |   Date:   Sun Jul 24 01:19:59 2011 +0100
| | |   
| | |       Initial SMEM implementation. With bugs, fix will follow.
| | |   
| | |   M	src/shogun/clustering/GMM.cpp
| | |   M	src/shogun/clustering/GMM.h
| | |   M	src/shogun/distributions/Gaussian.h
| | |    
* | | commit 1db16d9cbf7fe0da5c2645f8ab175840c357f97c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 24 01:45:07 2011 +0400
| | | 
| | |     Added DGEQR wrapper for QR factorization
| | | 
| | | M	src/shogun/mathematics/lapack.cpp
| | | M	src/shogun/mathematics/lapack.h
| | |      
* | |   commit 9d9ea5c4ef651932817e4f72f3a5de838c469dea
|\ \ \  Merge: 31d21d3 77d27f6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 10:56:48 2011 -0700
| | | | 
| | | |     Merge pull request #228 from karlnapf/master
| | | |     
| | | |     first working grid search with a kernel
| | | |     
| * | | commit 77d27f642bbf6dcd5c3247ebf04b2e590a0a9a2b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:52:43 2011 +0200
| | | | 
| | | |     extended model selection to select kernel with SGObject parameters
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit f7a8c7da2d4b93dffbd84a22ee295820b31176fe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:41:42 2011 +0200
| | | | 
| | | |     cleaned up includes
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |       
| * | |   commit b0ac9e5257badad9a09a41558467c3e7c07ae934
| |\ \ \  Merge: 31d21d3 0092dd8
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Fri Jul 22 19:37:50 2011 +0200
| | | |   
| | | |       Merge branch 'kernelmachine'
| | | |     
| * | | commit 0092dd8e1d36822c005834ed70ce9e0cdee3d4e9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:37:14 2011 +0200
| | | | 
| | | |     -renaming
| | | |     -added confidence interval computation
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| * | | commit 094c0160219591ab874c87860a47c0f50a445524
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:36:23 2011 +0200
| | | | 
| | | |     added grid search example with a kernel
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/modelselection_grid_search_kernel.cpp
| | | |     
| * | | commit b792f0f7972e975e7c575d97bcccbed6f62c0882
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 19:36:02 2011 +0200
| | | | 
| | | |     renamed grid_search_simple
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_grid_search_linear.cpp
| | | | D	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |       
* | | |   commit 31d21d3b65ca24884fa8bbb2c7e343774cdb130c
|\ \ \ \  Merge: 0f1f5d9 80b7302
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 22 09:13:41 2011 -0700
| | | |   
| | | |       Merge pull request #227 from karlnapf/master
| | | |       
| | | |       simplified parameter trees for model selection
| | | |     
| * | | commit 80b730257932bb5e116ec8c67114dc0bd8ba0ee7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:08:29 2011 +0200
| | | | 
| | | |     applied name node removal of model selection parameters
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit d05c40c773f1a9cee48475b4624267fb5d94ef8b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:01:45 2011 +0200
| | | | 
| | | |     removed "name nodes" which were a placeholder to group SGObject nodes. This is just not necessary
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | M	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit c94ebcc313eb30725c1c9be2c2ab71a0a31cb903
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 18:00:23 2011 +0200
| | | | 
| | | |     usage of CStatisitcs::mean instead of CMath
| | | | 
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | |     
| * | | commit 20f697448860a53f4fc1063f0abcdd119d03326b
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 22 16:25:30 2011 +0200
| | |   
| | |       usage of mean method of CStatistics instead of CMath
| | |   
| | |   M	src/shogun/evaluation/CrossValidation.cpp
| | |    
* | | commit 0f1f5d9ed7352a33426c5c8285670ecf36fb1b39
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 22 16:34:45 2011 +0200
| | | 
| | |     enable major/minor string finding over 2 snp feature objects
| | | 
| | | M	src/shogun/features/SNPFeatures.cpp
| | | M	src/shogun/features/SNPFeatures.h
| | |      
* | |   commit 35719a854d3721aaaa87e5d443117e29ffbe375e
|\ \ \  Merge: abdbf53 c3629a8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 07:31:38 2011 -0700
| | | | 
| | | |     Merge pull request #226 from karlnapf/master
| | | |     
| | | |     correction
| | | |     
| * | | commit c3629a8bd39ce17e8015aaea1ef89000d43b500d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 16:18:24 2011 +0200
| | | | 
| | | |     removed a check that did not make sense
| | | | 
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | |       
* | | |   commit abdbf5369b6b1796f669b7fa24bc5c0d569982cd
|\ \ \ \  Merge: f8239e9 68f6f71
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 22 03:38:09 2011 -0700
| | | |   
| | | |       Merge pull request #225 from karlnapf/master
| | | |       
| | | |       implementation of copy_subset
| | | |     
| * | | commit 68f6f71f7c62f425b875526a316ccb032e1db493
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 12:33:37 2011 +0200
| | | | 
| | | |     added example/test for copy_subset method of SimpleFeatures
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/features_copy_subset_simple_features.cpp
| | | |     
| * | | commit 295d6f0ace7c41881e6dd6ac89d4432579ceed81
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Fri Jul 22 12:29:48 2011 +0200
| | |   
| | |       implemented copy_subset method
| | |   
| | |   M	src/shogun/features/SimpleFeatures.h
| | |      
* | |   commit f8239e91fd171086786a114fae9b61c578c4ee20
|\ \ \  Merge: 6d0ae13 3bb09d5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 22 03:25:35 2011 -0700
| | | | 
| | | |     Merge pull request #224 from karlnapf/master
| | | |     
| | | |     made get_num_vectors method const
| | | |     
| * | | commit 3bb09d5aee7ac6f12f0b393e70f8bdf3d9ee9b66
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 22 10:54:05 2011 +0200
| | | | 
| | | |     made get_num_vectors() a const method
| | | | 
| | | | M	src/shogun/features/CombinedDotFeatures.h
| | | | M	src/shogun/features/CombinedFeatures.h
| | | | M	src/shogun/features/DummyFeatures.h
| | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | M	src/shogun/features/Features.h
| | | | M	src/shogun/features/HashedWDFeatures.h
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | M	src/shogun/features/PolyFeatures.h
| | | | M	src/shogun/features/SNPFeatures.h
| | | | M	src/shogun/features/SimpleFeatures.h
| | | | M	src/shogun/features/SparseFeatures.h
| | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | M	src/shogun/features/StringFeatures.h
| | | | M	src/shogun/features/WDFeatures.h
| | | |       
* | | |   commit 6d0ae13a0b07debbcf09db4b2fd7c072874fd23e
|\ \ \ \  Merge: c86e131 fe2408f
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Fri Jul 22 01:27:41 2011 -0700
| | | |   
| | | |       Merge pull request #223 from sploving/master
| | | |       
| | | |       add lua docs and further examples
| | | |     
| * | | commit fe2408fa7b2f9aad282381981bdd5019341c49fa
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 16:21:35 2011 +0800
| | | | 
| | | |     add lua doc in ModularTutorial.mainpage
| | | | 
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 49f6d5e82a6dfe0d2d75964d4f37381184423ccf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 16:15:50 2011 +0800
| | | | 
| | | |     add minimal libsvm lua modular
| | | | 
| | | | A	examples/undocumented/lua_modular/classifier_libsvm_minimal_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit e385d7177cb165e59d5f33c8c3af110c2982ebb8
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 15:16:08 2011 +0800
| | | | 
| | | |     add lua doc in Installion.mainpage
| | | | 
| | | | M	doc/pages/Installation.mainpage
| | | |     
| * | | commit 669e97cc7e70fff90616863b22578358b2a4a65b
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:55:13 2011 +0800
| | | | 
| | | |     add debug.getinfo(3), which is simliar to __main__ function in python
| | | | 
| | | | M	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | | | M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | M	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | | | M	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | | | M	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | | | M	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | | | M	examples/undocumented/lua_modular/serialization_complex_example.lua
| | | |     
| * | | commit 33d2b2354cdd3cb45a44b6f58b2854ffc9a6c2f1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:24:44 2011 +0800
| | | | 
| | | |     add kernel_comm_word_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_comm_word_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 7875d7b28665760a3421cb0e992f88ea14c459a3
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:17:09 2011 +0800
| | | | 
| | | |     add kerenel_comm_ulong_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_comm_ulong_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 6ee1f50f27794826a0ac772bb51eb806270f05ee
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 13:06:14 2011 +0800
| | | | 
| | | |     add kernel_linear_word_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_linear_word_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 93c62a63abaded3278c2de8d0fbf5466cd5cc6e1
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 12:59:45 2011 +0800
| | | | 
| | | |     add kernel_linear_byte_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_linear_byte_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |       
* | | |   commit c86e131225489bddbe45932604fd40c3177a9157
|\ \ \ \  Merge: fd2da15 8bb327a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Jul 21 23:40:38 2011 -0700
| | | |   
| | | |       Merge pull request #222 from sploving/8bb327a2f81c5e85ea97070aa548739bbb96291d
| | | |       
| | | |       add string support in typemap and example
| | | |     
| * | | commit 8bb327a2f81c5e85ea97070aa548739bbb96291d
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 11:22:01 2011 +0800
| | | | 
| | | |     add kernel_weighted_degree_string_modular.lua example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_weighted_degree_string_modular.lua
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
| * | | commit 334cc39b56b30d5f79415c48ef9bf3a3587346da
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 22 11:20:45 2011 +0800
| | | | 
| | | |     add stringfeatures check typemap
| | | | 
| | | | M	src/interfaces/lua_modular/swig_typemaps.i
| | | |     
* | | | commit fd2da157e85cc3b6534f2eaa1af2963915834015
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 21 22:34:21 2011 +0200
| | | | 
| | | |     Modify examples to only load modshogun.
| | | | 
| | | | M	examples/undocumented/java_modular/Load.java
| | | | M	examples/undocumented/java_modular/MatrixTest.java
| | | | M	examples/undocumented/java_modular/VectorTest.java
| | | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/classifier_domainadaptationsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | | M	examples/undocumented/java_modular/classifier_larank_modular.java
| | | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| | | | M	examples/undocumented/java_modular/classifier_libsvmoneclass_modular.java
| | | | M	examples/undocumented/java_modular/classifier_mpdsvm_modular.java
| | | | M	examples/undocumented/java_modular/classifier_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | | | M	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | | | M	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | | | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | | | M	examples/undocumented/java_modular/distance_braycurtis_modular.java
| | | | M	examples/undocumented/java_modular/distance_canberra_modular.java
| | | | M	examples/undocumented/java_modular/distance_canberraword_modular.java
| | | | M	examples/undocumented/java_modular/distance_chebyshew_modular.java
| | | | M	examples/undocumented/java_modular/distance_chisquare_modular.java
| | | | M	examples/undocumented/java_modular/distance_cosine_modular.java
| | | | M	examples/undocumented/java_modular/distance_euclidian_modular.java
| | | | M	examples/undocumented/java_modular/distance_geodesic_modular.java
| | | | M	examples/undocumented/java_modular/distance_hammingword_modular.java
| | | | M	examples/undocumented/java_modular/distance_jensen_modular.java
| | | | M	examples/undocumented/java_modular/distance_manhatten_modular.java
| | | | M	examples/undocumented/java_modular/distance_manhattenword_modular.java
| | | | M	examples/undocumented/java_modular/distance_minkowski_modular.java
| | | | M	examples/undocumented/java_modular/distance_normsquared_modular.java
| | | | M	examples/undocumented/java_modular/distance_tanimoto_modular.java
| | | | M	examples/undocumented/java_modular/distribution_histogram_modular.java
| | | | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | | M	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | | | M	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_contingencytableevaluation_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_meansquarederror_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_multiclassaccuracy_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_prcevaluation_modular.java
| | | | M	examples/undocumented/java_modular/evaluation_rocevaluation_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_modular.java
| | | | M	examples/undocumented/java_modular/features_simple_real_modular.java
| | | | M	examples/undocumented/java_modular/features_snp_modular.java
| | | | M	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | | | M	examples/undocumented/java_modular/features_string_char_modular.java
| | | | M	examples/undocumented/java_modular/features_string_file_char_modular.java
| | | | M	examples/undocumented/java_modular/features_string_file_modular.java
| | | | M	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | | | M	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | | | M	examples/undocumented/java_modular/features_string_ulong_modular.java
| | | | M	examples/undocumented/java_modular/features_string_word_modular.java
| | | | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | | | M	examples/undocumented/java_modular/kernel_auc_modular.java
| | | | M	examples/undocumented/java_modular/kernel_cauchy_modular.java
| | | | M	examples/undocumented/java_modular/kernel_chi2_modular.java
| | | | M	examples/undocumented/java_modular/kernel_circular_modular.java
| | | | M	examples/undocumented/java_modular/kernel_combined_custom_poly_modular.java
| | | | M	examples/undocumented/java_modular/kernel_combined_modular.java
| | | | M	examples/undocumented/java_modular/kernel_comm_ulong_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_comm_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_const_modular.java
| | | | M	examples/undocumented/java_modular/kernel_custom_modular.java
| | | | M	examples/undocumented/java_modular/kernel_diag_modular.java
| | | | M	examples/undocumented/java_modular/kernel_distance_modular.java
| | | | M	examples/undocumented/java_modular/kernel_distantsegments_modular.java
| | | | M	examples/undocumented/java_modular/kernel_exponential_modular.java
| | | | M	examples/undocumented/java_modular/kernel_fisher_modular.java
| | | | M	examples/undocumented/java_modular/kernel_fixed_degree_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | | M	examples/undocumented/java_modular/kernel_gaussian_shift_modular.java
| | | | M	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_inversemultiquadric_modular.java
| | | | M	examples/undocumented/java_modular/kernel_io_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_byte_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_linear_word_modular.java
| | | | M	examples/undocumented/java_modular/kernel_local_alignment_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_locality_improved_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_log_modular.java
| | | | M	examples/undocumented/java_modular/kernel_match_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_multiquadric_modular.java
| | | | M	examples/undocumented/java_modular/kernel_oligo_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_poly_modular.java
| | | | M	examples/undocumented/java_modular/kernel_power_modular.java
| | | | M	examples/undocumented/java_modular/kernel_rationalquadratic_modular.java
| | | | M	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_sigmoid_modular.java
| | | | M	examples/undocumented/java_modular/kernel_simple_locality_improved_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_spherical_modular.java
| | | | M	examples/undocumented/java_modular/kernel_spline_modular.java
| | | | M	examples/undocumented/java_modular/kernel_top_modular.java
| | | | M	examples/undocumented/java_modular/kernel_tstudent_modular.java
| | | | M	examples/undocumented/java_modular/kernel_wave_modular.java
| | | | M	examples/undocumented/java_modular/kernel_wavelet_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_comm_word_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| | | | M	examples/undocumented/java_modular/mkl_binclass_modular.java
| | | | M	examples/undocumented/java_modular/mkl_multiclass_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_logplusone_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_normone_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_pca_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_prunevarsubmean_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_randomfouriergausspreproc_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| | | | M	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
| | | | M	examples/undocumented/java_modular/regression_krr_modular.java
| | | | M	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | | M	examples/undocumented/java_modular/regression_svrlight_modular.java
| | | | M	examples/undocumented/java_modular/serialization_complex_example.java
| | | | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | | | M	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| | | |       
* | | |   commit 2399d29c2d8889531388a2b15dc4138cfd93a639
|\ \ \ \  Merge: 5ac6102 963da14
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Jul 21 08:20:15 2011 -0700
| | | | | 
| | | | |     Merge pull request #221 from karlnapf/master
| | | | |     
| | | | |     changes towards kernel machine model storage
| | | | |      
| * | | | commit 963da14fdd1aa6673f59559d7d0129e450993f39
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:09:25 2011 +0200
| | | | | 
| | | | |     renamed train() to train_kernel_machine() which is private and being called from KernelMachine
| | | | | 
| | | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | | M	src/shogun/classifier/mkl/MKL.h
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | | M	src/shogun/regression/KRR.cpp
| | | | | M	src/shogun/regression/KRR.h
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.h
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.h
| | | | |      
| * | | | commit 4a2bcb739095e9f202f44bb81062b964e95961af
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:09:14 2011 +0200
| | | | | 
| | | | |     added has_subset method
| | | | | 
| | | | | M	src/shogun/features/Features.h
| | | | |      
| * | | | commit 608d4641c74842a3ad8de4b9e0067db30ad6e265
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:07:45 2011 +0200
| | | | | 
| | | | |     added comments
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 545972e1e9e293165b24ed27c920c4e5c0694699
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 17:07:31 2011 +0200
| | | | | 
| | | | |     forbid subset on lhs when calling apply
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | |      
| * | | | commit 0c66e74c3b557354c97ad70d520b7494738040cb
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:49:08 2011 +0200
| | | | | 
| | | | |     removed warning
| | | | | 
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | |      
| * | | | commit bfa3fad6556bb3d70619c82df635e040f87c6139
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:48:20 2011 +0200
| | | | | 
| | | | |     removed KernelPerceptron
| | | | | 
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | |      
| * | | | commit 7a629ffac127f9a3cdc5f7a45adea74a28707f00
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:47:02 2011 +0200
| | | | | 
| | | | |     removed debug stuff
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 87d622b4ed714fd2a9b15e677909483dfbce1dcb
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:41:02 2011 +0200
| | | | | 
| | | | |     added method to copy a subset of features
| | | | | 
| | | | | M	src/shogun/features/Features.h
| | | | |      
| * | | | commit ebad67e9b3dfb23db8ce3cee29da9e7739458e27
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:40:15 2011 +0200
| | | | | 
| | | | |     added store_sv_features method to store SV data after training locally
| | | | |     some changes go along with this
| | | | |     train method now calls train_kernel_machine
| | | | | 
| | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | |      
| * | | | commit 1eb0e2355284abce73ccd74b1d332e78b0e104ff
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 16:38:57 2011 +0200
| | | | | 
| | | | |     removed KernelPerceptron
| | | | | 
| | | | | M	src/interfaces/modular/Classifier.i
| | | | | M	src/interfaces/modular/Classifier_includes.i
| | | | | D	src/shogun/classifier/KernelPerceptron.cpp
| | | | | D	src/shogun/classifier/KernelPerceptron.h
| | | | |      
| * | | | commit 4599e80c41597b02d88c81ae9e6eb5b1c03fb771
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 15:02:15 2011 +0200
| | | | | 
| | | | |     fixed compile error
| | | | | 
| | | | | M	src/shogun/mathematics/Math.h
| | | | |      
| * | | | commit 15a9a2ff1d4828b312a9e2fe4a3774af80aaf8b5
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 21 15:02:06 2011 +0200
| | | | | 
| | | | |     better assert
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | |        
* | | | |   commit 5ac61021fb14249b0270ba77eca07e1a35e5233e
|\ \ \ \ \  Merge: 541e13e c3d0e6d
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Thu Jul 21 06:25:55 2011 -0700
| | | | |   
| | | | |       Merge pull request #220 from sploving/master
| | | | |       
| | | | |       add generator.lua
| | | | |      
| * | | | commit c3d0e6d9f092cd80dede9852d10a6d9588e23987
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Thu Jul 21 20:18:18 2011 +0800
| | | | | 
| | | | |     add generator.lua
| | | | | 
| | | | | A	testsuite/lua_modular/generator.lua
| | | | |      
| * | | | commit b3eb3765ad8358821da2e068dff15bbd2ccd8a71
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 21:56:02 2011 +0800
| | | | | 
| | | | |     add serialization_complex_example.lua
| | | | | 
| | | | | A	examples/undocumented/lua_modular/serialization_complex_example.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |        
* | | | |   commit 541e13e1d053411e8b8e742fc405fcb4312bab38
|\ \ \ \ \  Merge: ef357f2 77cda69
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 10:59:10 2011 -0700
| | | | |   
| | | | |       Merge pull request #218 from karlnapf/master
| | | | |       
| | | | |       use SGVector for KernelMachine svs and alphas
| | | | |        
| * | | |   commit 77cda696b2ca9a89c50f7e9bb4411d4c8515eca7
| |\ \ \ \  Merge: 9e9338a 91d2b12
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:15:54 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:karlnapf/shogun
| | | | | |       
| | * | | | commit 91d2b122042604601b732a238c88b43d349e20ab
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:58 2011 +0200
| | | | | | 
| | | | | |     removed a warning
| | | | | | 
| | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | |       
| | * | | | commit ccd35adab282352ceb14dd00e942884b1e83a413
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:50 2011 +0200
| | | | | | 
| | | | | |     applied SGVector changes in KernelMachine
| | | | | | 
| | | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | |       
| | * | | | commit e6252645b301d7cc4d2cae1c9871a2d56c4eb49e
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:32 2011 +0200
| | | | | | 
| | | | | |     usage of SGVector for support vectors and alpha coefficients
| | | | | | 
| | | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | |       
| * | | | | commit 9e9338ada1fdbfe3f9cc3c9e85e7857f31027bee
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:58 2011 +0200
| | | | | | 
| | | | | |     removed a warning
| | | | | | 
| | | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | |       
| * | | | | commit 60be54821762fa6c4d8c923007c017b4d0803b4a
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:50 2011 +0200
| | | | | | 
| | | | | |     applied SGVector changes in KernelMachine
| | | | | | 
| | | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | |       
| * | | | | commit 96570bde463f21befc2e3c8041f7325246de8d93
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jul 20 17:13:32 2011 +0200
| | | | | | 
| | | | | |     usage of SGVector for support vectors and alpha coefficients
| | | | | | 
| | | | | | M	src/shogun/machine/KernelMachine.cpp
| | | | | | M	src/shogun/machine/KernelMachine.h
| | | | | |         
* | | | | |   commit ef357f2a6ff48da25c96f19b17242742c0a87555
|\ \ \ \ \ \  Merge: eeec47b dc33d39
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Wed Jul 20 10:57:40 2011 -0700
| | | | | |   
| | | | | |       Merge pull request #219 from alesis/gmm
| | | | | |       
| | | | | |       Example and fix
| | | | | |       
| * | | | | commit dc33d39f1697de5fd52662911d1ac7e54b114264
|/ / / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | | |   Date:   Tue Jul 19 23:45:06 2011 +0100
| | | | |   
| | | | |       Example and fix
| | | | |   
| | | | |   A	examples/undocumented/python_modular/clustering_gmm_modular.py
| | | | |   M	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | | |      
* | | | | commit eeec47b285abbed7c9123737589f015b03243c7f
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Jul 20 16:30:06 2011 +0200
| | | | | 
| | | | |     comment these typemaps - they just don't work yet
| | | | | 
| | | | | M	src/interfaces/csharp_modular/swig_typemaps.i
| | | | |        
* | | | |   commit 9cd2e5e1378c72c57b4a8711a7721d3bb28ae804
|\ \ \ \ \  Merge: 43cd548 0e4d085
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 06:35:05 2011 -0700
| | | | |   
| | | | |       Merge pull request #217 from sploving/master
| | | | |       
| | | | |       add some more lua examples
| | | | |      
| * | | | commit 0e4d08584523a36db40a6a935f92ff7d5d439e0d
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:12:53 2011 +0800
| | | | | 
| | | | |     regression_krr_modular.lua
| | | | | 
| | | | | A	examples/undocumented/lua_modular/regression_krr_modular.lua
| | | | |      
| * | | | commit 181e6650360adbc5c44b7f220b7682fda9d2a967
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:09:27 2011 +0800
| | | | | 
| | | | |     add preprocessor_classicisomap example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/preprocessor_classicisomap_modular.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |      
| * | | | commit 355c82cb2b7e7a969f5aeca3ded2ef7577b7e3be
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 15:04:58 2011 +0800
| | | | | 
| | | | |     add features_simple_real_modular example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/features_simple_real_modular.lua
| | | | |      
| * | | | commit 2c98bc0a75c1e8b0eb7c1c0bdf52e304295f31b7
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 14:56:41 2011 +0800
| | | | | 
| | | | |     fix typo
| | | | | 
| | | | | M	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | |      
| * | | | commit 026cf32b2b41a1d85ca8b01180fefb9e2339ef5f
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Wed Jul 20 14:42:28 2011 +0800
| | | | | 
| | | | |     add evaluation_contingencytableevaluation_modular example
| | | | | 
| | | | | A	examples/undocumented/lua_modular/evaluation_contingencytableevaluation_modular.lua
| | | | | M	src/interfaces/lua_modular/shogun.lua
| | | | |        
* | | | |   commit 43cd548bfad5a1d09b5fcf309962e3605445937e
|\ \ \ \ \  Merge: 1e6799c 3d831f7
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Wed Jul 20 05:36:55 2011 -0700
| | | | |   
| | | | |       Merge pull request #216 from karlnapf/master
| | | | |       
| | | | |       confidence interval example and some minor fixes
| | | | |      
| * | | | commit 3d831f7622ed9657297e2b0acf5e6646b7ff41c1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:33:34 2011 +0200
| | | | | 
| | | | |     fixed mem-leak
| | | | | 
| | | | | M	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | | | |      
| * | | | commit 5de9e44d70028b679ddebb10f47a8e1ec8f3e541
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:30:53 2011 +0200
| | | | | 
| | | | |     corrected includes
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | | M	src/shogun/mathematics/Statistics.h
| | | | |      
| * | | | commit 7055cec2fba430ac82b60c714bfeff11f532db0c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:27:28 2011 +0200
| | | | | 
| | | | |     added confidence interval example
| | | | | 
| | | | | M	examples/undocumented/libshogun/Makefile
| | | | |      
| * | | | commit a19dcaea1b2b9d109465c8e893bb6f94f5d206e1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:26:42 2011 +0200
| | | | | 
| | | | |     initial add
| | | | | 
| | | | | A	examples/undocumented/libshogun/mathematics_confidence_intervals.cpp
| | | | |      
| * | | | commit 2898c6a4866eb303909eb00648f84c1baddc7e26
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed Jul 20 14:26:36 2011 +0200
| | | | | 
| | | | |     use absolute value of inverse student t value (symmetric anyways)
| | | | | 
| | | | | M	src/shogun/mathematics/Statistics.cpp
| | | | |      
| * | | | commit 4c34b9726b6c745062115a011d75ce44f373eba7
|/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Wed Jul 20 14:08:25 2011 +0200
| | | |   
| | | |       added important comment
| | | |   
| | | |   M	src/shogun/mathematics/Statistics.h
| | | |     
* | | | commit 1e6799c31de7225cce2179692e93d492e39d056c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jul 20 09:16:09 2011 +0200
| | | | 
| | | |     install modshogun in base level directory and only underneath in
| | | |     shogun/* Kernel, Features, ... compatibility helpers
| | | | 
| | | | M	src/Makefile.template
| | | |       
* | | |   commit f2b409277e46e9a32fc428d63cda2673278fa62b
|\ \ \ \  Merge: 417cfbb d4aa6d9
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Tue Jul 19 23:46:53 2011 -0700
| | | |   
| | | |       Merge pull request #215 from frx/streaming_1
| | | |       
| | | |       Use of pthread_cond_wait in place of busy-loop in parser
| | | |     
| * | | commit d4aa6d9a084d32da144b94d2b8a7f3e1b5cd3e61
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Jul 20 10:23:00 2011 +0530
| | |   
| | |       Parser changed to use condition variable waiting in place of the spinlock.
| | |   
| | |   M	src/shogun/io/InputParser.h
| | |    
* | | commit 417cfbbd42809aad7a18eb81bf4fb72d83bfc3b0
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 20 02:52:22 2011 +0200
| | | 
| | |     doxygen support for python_modular's modshogun
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/configure
| | | M	src/interfaces/modular/Classifier.i
| | | M	src/interfaces/modular/Clustering.i
| | | M	src/interfaces/modular/Distance.i
| | | M	src/interfaces/modular/Distribution.i
| | | M	src/interfaces/modular/Evaluation.i
| | | M	src/interfaces/modular/Features.i
| | | M	src/interfaces/modular/IO.i
| | | M	src/interfaces/modular/Kernel.i
| | | M	src/interfaces/modular/Library.i
| | | M	src/interfaces/modular/Mathematics.i
| | | M	src/interfaces/modular/ModelSelection.i
| | | M	src/interfaces/modular/Preprocessor.i
| | | M	src/interfaces/modular/Regression.i
| | | M	src/interfaces/modular/Structure.i
| | | A	src/interfaces/modular/modshogun.doxy
| | | M	src/interfaces/modular/modshogun.i
| | |      
* | |   commit e31becc5899810fd0b8cc63b8bdbbc473ebe4b71
|\ \ \  Merge: ec1939d 00691c6
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 17:22:27 2011 -0700
| | | | 
| | | |     Merge pull request #214 from karlnapf/master
| | | |     
| | | |     introduced CStatistics class
| | | |     
| * | | commit 00691c6073797e5887d689e5ce6cc6b4bdc0d2e9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:24:33 2011 +0200
| | | | 
| | | |     removed a warning
| | | | 
| | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | |     
| * | | commit 06ba167dd5629f0916fcf6a317e60fce62af78c2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:22:36 2011 +0200
| | | | 
| | | |     marked mean method as deprecated
| | | | 
| | | | M	src/shogun/mathematics/Math.h
| | | |     
| * | | commit 961441f94cbf3df29047f648e3851f9f89effa08
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:19:59 2011 +0200
| | | | 
| | | |     initial add
| | | |     -includes methods to compute confidence intervals using the student's t distribution
| | | | 
| | | | A	src/shogun/mathematics/Statistics.cpp
| | | | A	src/shogun/mathematics/Statistics.h
| | | |     
| * | | commit 134ed8b53aa837a3d6b9e18a6fda318992b3aa9f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jul 19 20:16:44 2011 +0200
| | | | 
| | | |     added some constants and gnu math function wrappers
| | | | 
| | | | M	src/shogun/mathematics/Math.cpp
| | | | M	src/shogun/mathematics/Math.h
| | | |       
* | | |   commit ec1939de4689ba2fcac3a236741bf768c2a67598
|\ \ \ \  Merge: 4b9fc30 0454959
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Wed Jul 20 02:19:50 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 0454959dadac42b2c09dd085c2a052a02e20b6dd
| |\ \ \ \  Merge: 44cf499 8286ce3
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Tue Jul 19 23:43:47 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit 44cf4999f8e2f345c920d7b4f99a91c800e5cd36
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Tue Jul 19 23:43:39 2011 +0400
| | | | | 
| | | | |     Fixed z_matrix size at LocallyLinearEmbedding
| | | | | 
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit 4b9fc307eee4243bda374af1018d0c947fde722a
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Jul 20 02:14:44 2011 +0200
| | | |   
| | | |       Just create a single modshogun object for the modular interfaces. While
| | | |       this increases wrapper size (memory requirements when compiling) - it
| | | |       avoids all the issues we were having utilizing %import and multiple swig
| | | |       modules. Namely octave_modular is now working reliably / rock-stable.
| | | |       Require order in lua_modular decides no longer if sth works or not, etc
| | | |       
| | | |       To reduce wrapper size the Array* wrappings were removed from the
| | | |       interfaces and std.i is no longer included.
| | | |   
| | | |   M	README
| | | |   M	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | |   M	examples/undocumented/lua_modular/check.sh
| | | |   M	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | |   M	src/Makefile.template
| | | |   M	src/interfaces/lua_modular/shogun.lua
| | | |   D	src/interfaces/modular/Classifier.doxy
| | | |   M	src/interfaces/modular/Classifier.i
| | | |   D	src/interfaces/modular/Clustering.doxy
| | | |   M	src/interfaces/modular/Clustering.i
| | | |   D	src/interfaces/modular/Distance.doxy
| | | |   M	src/interfaces/modular/Distance.i
| | | |   D	src/interfaces/modular/Distribution.doxy
| | | |   M	src/interfaces/modular/Distribution.i
| | | |   D	src/interfaces/modular/Evaluation.doxy
| | | |   M	src/interfaces/modular/Evaluation.i
| | | |   D	src/interfaces/modular/Features.doxy
| | | |   M	src/interfaces/modular/Features.i
| | | |   D	src/interfaces/modular/IO.doxy
| | | |   M	src/interfaces/modular/IO.i
| | | |   D	src/interfaces/modular/Kernel.doxy
| | | |   M	src/interfaces/modular/Kernel.i
| | | |   D	src/interfaces/modular/Library.doxy
| | | |   M	src/interfaces/modular/Library.i
| | | |   D	src/interfaces/modular/Mathematics.doxy
| | | |   M	src/interfaces/modular/Mathematics.i
| | | |   D	src/interfaces/modular/ModelSelection.doxy
| | | |   M	src/interfaces/modular/ModelSelection.i
| | | |   D	src/interfaces/modular/Preprocessor.doxy
| | | |   M	src/interfaces/modular/Preprocessor.i
| | | |   D	src/interfaces/modular/Regression.doxy
| | | |   M	src/interfaces/modular/Regression.i
| | | |   M	src/interfaces/modular/SGBase.i
| | | |   D	src/interfaces/modular/Structure.doxy
| | | |   M	src/interfaces/modular/Structure.i
| | | |   A	src/interfaces/modular/modshogun.i
| | | |       
* | | |   commit 8286ce3c7ce74c4caacbc79dd7fe97913841a046
|\ \ \ \  Merge: 6dab54f 9fb1c7c
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 17:06:21 2011 +0200
| | | |   
| | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 9fb1c7cdd87c1976afb5121ec953c4139ef5ecf3
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jul 19 17:27:27 2011 +0400
| | | | 
| | | |     Design improvement for LocallyLinearEmbedding
| | | | 
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | |     
* | | | commit 6dab54f7d71500a7d350d0f8c6d4b1e1c43823d0
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 19 17:05:00 2011 +0200
| | |   
| | |       zero poim before computing it
| | |   
| | |   M	src/shogun/distributions/PositionalPWM.cpp
| | |   M	src/shogun/distributions/PositionalPWM.h
| | |    
* | | commit dc9ddee591a319a302297bc9155d4f9ecf381dbb
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 19 14:31:30 2011 +0200
| | | 
| | |     remove get_distance_matrix(float64_t** dst, int32_t* m, int32_t* n) and
| | |     adjust preprocs accordingly
| | | 
| | | M	src/shogun/distance/Distance.cpp
| | | M	src/shogun/distance/Distance.h
| | | M	src/shogun/preprocessor/Isomap.h
| | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | |      
* | |   commit 003fbf5fa073970ec1ca143fea0f49c4ef39bf9d
|\ \ \  Merge: 33f0c26 360ef02
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 05:10:44 2011 -0700
| | | | 
| | | |     Merge pull request #213 from sploving/master
| | | |     
| | | |     add AveragedPerceptron for classifier
| | | |     
| * | | commit 360ef02a9da9800b9598d21f1e92510c1d2adb86
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 20:09:33 2011 +0800
| | | | 
| | | |     add AveragedPerceptron for classifier
| | | | 
| | | | M	src/interfaces/lua_modular/shogun.lua
| | | |     
* | | | commit 33f0c26827c48577297f765a4a7f6d19271ce416
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 14:06:37 2011 +0200
| | | | 
| | | |     add lua example check script
| | | | 
| | | | A	examples/undocumented/lua_modular/check.sh
| | | |     
* | | | commit 584c096427cc8cda49b9e7dcc509ee2670889779
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 13:38:33 2011 +0200
| | | | 
| | | |     fix build failure w/ {IO,Mathematics,ModelSelection}_doxygen.i
| | | | 
| | | | M	src/.generate_link_dependencies.py
| | | |     
* | | | commit 2682d26dca45941b8b02d1ecb2e404ae0c416f18
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 19 13:13:08 2011 +0200
| | | | 
| | | |     enable java autodetection
| | | | 
| | | | M	src/configure
| | | |       
* | | |   commit b908d51c942f58d315d976f3da5ee63846089e79
|\ \ \ \  Merge: 3c9006f 909ad5f
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 04:11:47 2011 -0700
| | | |   
| | | |       Merge pull request #212 from sploving/master
| | | |       
| | | |       add a lua  kernel  example
| | | |     
| * | | commit 909ad5f5feb413b2716096eecb0c8b25d279fd02
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:42:36 2011 +0800
| | | | 
| | | |     add one kernel example
| | | | 
| | | | A	examples/undocumented/lua_modular/kernel_gaussian_modular.lua
| | | |       
* | | |   commit 3c9006f0afbf3594fc6f80206f4e9a7342cfe238
|\ \ \ \  Merge: 6d22179 7118c47
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jul 19 03:37:26 2011 -0700
| | | |   
| | | |       Merge pull request #211 from sploving/master
| | | |       
| | | |       add load.lua, two examples and lua doc
| | | |     
| * | | commit 7118c473172a25762f09c80b3008795e13117c9c
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:28:32 2011 +0800
| | | | 
| | | |     add one distance example
| | | | 
| | | | A	examples/undocumented/lua_modular/distance_braycurtis_modular.lua
| | | |     
| * | | commit 190958ea8c2566a1a42893d18c7d48681d73d6bf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:27:39 2011 +0800
| | | | 
| | | |     add one classifier example
| | | | 
| | | | A	examples/undocumented/lua_modular/classifier_averaged_perceptron_modular.lua
| | | |     
| * | | commit 1bebd27f55a9e86739c1025667ae74a873198fa4
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:26:24 2011 +0800
| | | | 
| | | |     add lua doc for lua path set
| | | | 
| | | | M	doc/pages/ModularTutorial.mainpage
| | | |     
| * | | commit 8590caf191328308cb0665efb22ff8c90025e45e
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jul 19 18:15:07 2011 +0800
| | | | 
| | | |     add load.lua
| | | | 
| | | | A	examples/undocumented/lua_modular/load.lua
| | | |       
* | | |   commit 6d221799594fe7b28e8b573113880245893df193
|\ \ \ \  Merge: 21de43e 0a35e71
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jul 19 10:04:28 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 0a35e712a33d8e6fb92f4eebfada0df3d911f1be
| |\ \ \ \  Merge: 2a8980b 5f2d2b1
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Tue Jul 19 01:03:56 2011 -0700
| | | | | | 
| | | | | |     Merge pull request #210 from frx/streaming_1
| | | | | |     
| | | | | |     Transition to file descriptors in StreamingFeatures
| | | | | |       
| | * | | | commit 5f2d2b137263d8076cbf0f03fac713176017ee6a
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 12:54:00 2011 +0530
| | | | | | 
| | | | | |     Correction in include path in StreamingFile.
| | | | | | 
| | | | | | M	src/shogun/io/StreamingFile.h
| | | | | |         
| | * | | |   commit 9c42aa22b66118da67ee580d2c8c395f074bc35d
| | |\ \ \ \  Merge: 2a8980b 48366d4
| |/ / / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | |   Date:   Tue Jul 19 12:35:06 2011 +0530
| | | | | |   
| | | | | |       Transition from file streams to descriptors for streaming features.
| | | | | |       
| | * | | | commit 48366d4999205776119d706953e01866dab0f77c
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 12:25:44 2011 +0530
| | | | | | 
| | | | | |     Corrected get_vector and get_vector_and_label to work with new non-null terminated strings from read_line.
| | | | | | 
| | | | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | |       
| | * | | | commit ce95818b2bab096717e2c2d16d449fe0a5575655
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 10:09:26 2011 +0530
| | | | | | 
| | | | | |     Completed modification of StreamingAsciiFile to use buffer-proxied input.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/IOBuffer.h
| | | | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.h
| | | | | |       
| | * | | | commit 3994bb8fcfd609abc440e02715ddbd108e78b189
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 08:00:26 2011 +0530
| | | | | | 
| | | | | |     Updated v_array and IOBuffer to use v_array member functions.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/v_array.h
| | | | | |       
| | * | | | commit 8fce7e7fff066176fba9d09ecce77d8b6a173094
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Tue Jul 19 06:59:30 2011 +0530
| | | | | | 
| | | | | |     Initial changes in IOBuffer and StreamingFile to use file descriptors.
| | | | | | 
| | | | | | M	src/shogun/lib/IOBuffer.cpp
| | | | | | M	src/shogun/lib/IOBuffer.h
| | | | | | M	src/shogun/lib/StreamingFile.cpp
| | | | | | M	src/shogun/lib/StreamingFile.h
| | | | | |         
* | | | | |   commit 21de43e0e1c4d54d7a6626c9d0d68c86c34ecd8b
|\ \ \ \ \ \  Merge: 4a43d33 2a8980b
| |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Tue Jul 19 10:00:08 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | | |         
| * | | | |   commit 2a8980bc6e359af7fde90458d1717d11b0c584bc
| |\ \ \ \ \  Merge: 6c8f9ca ddc2e2a
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Jul 18 23:29:07 2011 -0700
| | | | | | | 
| | | | | | |     Merge pull request #209 from alesis/gmm
| | | | | | |     
| | | | | | |     Added examples for GMM
| | | | | | |        
| | * | | | | commit ddc2e2af4bf5c4982bf7e192762d1c45ef1016a2
| | | |/ / /  Author: Alesis Novik <alesisnov@gmail.com>
| | |/| | |   Date:   Tue Jul 19 03:59:20 2011 +0100
| | | | | |   
| | | | | |       Added examples
| | | | | |   
| | | | | |   A	examples/undocumented/python_modular/graphical/em_1d_gmm.py
| | | | | |   A	examples/undocumented/python_modular/graphical/em_2d_gmm.py
| | | | | |       
* | | | | | commit 4a43d33a62e00e5666f16fec2e11fa431f2750a8
|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Tue Jul 19 09:58:02 2011 +0200
| | | | |   
| | | | |       fix examples and check-examples for libshogun
| | | | |   
| | | | |   M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | |   M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | |   M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | | | |   M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | | |   M	examples/undocumented/libshogun/kernel_gaussian.cpp
| | | | |   M	examples/undocumented/libshogun/kernel_revlin.cpp
| | | | |   M	examples/undocumented/libshogun/library_dyn_int.cpp
| | | | |   M	examples/undocumented/libshogun/library_indirect_object.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | |   M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | |   M	src/Makefile
| | | | |      
* | | | | commit 6c8f9ca9abd2dc64b7ed3311f997d2bbc236d916
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Tue Jul 19 00:07:09 2011 +0200
| | | | | 
| | | | |     rename IO class to SGIO to avoid IO (module) vs. IO (class) naming clash
| | | | | 
| | | | | M	src/NEWS
| | | | | M	src/README.developer
| | | | | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | | | | M	src/interfaces/csharp_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/java_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/lua_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/interfaces/octave_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/octave_static/OctaveInterface.cpp
| | | | | M	src/interfaces/python_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | | M	src/interfaces/r_static/RInterface.cpp
| | | | | M	src/interfaces/ruby_modular/sg_print_functions.cpp
| | | | | M	src/shogun/base/DynArray.h
| | | | | M	src/shogun/base/Parallel.h
| | | | | M	src/shogun/base/Parameter.h
| | | | | M	src/shogun/base/SGObject.cpp
| | | | | M	src/shogun/base/SGObject.h
| | | | | M	src/shogun/base/Version.h
| | | | | M	src/shogun/base/init.cpp
| | | | | M	src/shogun/base/init.h
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | | M	src/shogun/distance/CosineDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.cpp
| | | | | M	src/shogun/distance/Distance.cpp
| | | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | | M	src/shogun/distance/JensenMetric.cpp
| | | | | M	src/shogun/distance/KernelDistance.cpp
| | | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | | M	src/shogun/distance/SimpleDistance.h
| | | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | | M	src/shogun/distributions/HMM.cpp
| | | | | M	src/shogun/distributions/HMM.h
| | | | | M	src/shogun/distributions/Histogram.cpp
| | | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/shogun/features/Alphabet.cpp
| | | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | | M	src/shogun/features/FKFeatures.cpp
| | | | | M	src/shogun/features/Features.cpp
| | | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | | M	src/shogun/features/Labels.cpp
| | | | | M	src/shogun/features/Labels.h
| | | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | | M	src/shogun/features/SNPFeatures.cpp
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | | M	src/shogun/features/StringFeatures.h
| | | | | M	src/shogun/features/StringFileFeatures.h
| | | | | M	src/shogun/features/Subset.cpp
| | | | | M	src/shogun/features/TOPFeatures.cpp
| | | | | M	src/shogun/features/WDFeatures.cpp
| | | | | M	src/shogun/io/AsciiFile.h
| | | | | M	src/shogun/io/BinaryFile.h
| | | | | M	src/shogun/io/BinaryStream.h
| | | | | M	src/shogun/io/HDF5File.h
| | | | | M	src/shogun/io/IOBuffer.h
| | | | | M	src/shogun/io/InputParser.h
| | | | | M	src/shogun/io/LibSVMFile.h
| | | | | M	src/shogun/io/MemoryMappedFile.h
| | | | | A	src/shogun/io/SGIO.cpp
| | | | | A	src/shogun/io/SGIO.h
| | | | | M	src/shogun/io/SimpleFile.h
| | | | | M	src/shogun/io/StreamingFile.h
| | | | | D	src/shogun/io/io.cpp
| | | | | D	src/shogun/io/io.h
| | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | M	src/shogun/kernel/DotKernel.h
| | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | M	src/shogun/lib/BitString.h
| | | | | M	src/shogun/lib/Cache.h
| | | | | M	src/shogun/lib/Compressor.h
| | | | | M	src/shogun/lib/DynInt.h
| | | | | M	src/shogun/lib/Signal.cpp
| | | | | M	src/shogun/lib/Time.cpp
| | | | | M	src/shogun/lib/Time.h
| | | | | M	src/shogun/lib/Trie.cpp
| | | | | M	src/shogun/lib/Trie.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/mathematics/Cplex.cpp
| | | | | M	src/shogun/mathematics/Loss.h
| | | | | M	src/shogun/mathematics/Math.cpp
| | | | | M	src/shogun/mathematics/Math.h
| | | | | M	src/shogun/mathematics/arpack.cpp
| | | | | M	src/shogun/mathematics/arpack.h
| | | | | M	src/shogun/mathematics/lapack.cpp
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/shogun/preprocessor/Isomap.h
| | | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/structure/DynProg.cpp
| | | | | M	src/shogun/structure/DynProg.h
| | | | | M	src/shogun/structure/IntronList.cpp
| | | | | M	src/shogun/structure/Plif.cpp
| | | | | M	src/shogun/structure/PlifArray.cpp
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | | M	src/shogun/ui/GUIDistance.cpp
| | | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | M	src/shogun/ui/GUILabels.cpp
| | | | | M	src/shogun/ui/GUIMath.cpp
| | | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | | M	src/shogun/ui/GUISignals.cpp.orig
| | | | | M	src/shogun/ui/GUIStructure.cpp
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |      
* | | | | commit 4c71689ff029f1c900adad6a2cb1b89e57f856f9
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 23:19:35 2011 +0200
| | | | | 
| | | | |     mention doxy files in link dependency generator
| | | | | 
| | | | | M	src/.generate_link_dependencies.py
| | | | |      
* | | | | commit 2514157dad708883a35532dbdff847984c618a60
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 23:15:49 2011 +0200
| | | | | 
| | | | |     move data types back to library
| | | | | 
| | | | | M	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | | M	src/shogun/io/SerializableAsciiFile.cpp
| | | | | M	src/shogun/io/SerializableAsciiReader00.cpp
| | | | | M	src/shogun/io/SerializableHdf5File.cpp
| | | | | M	src/shogun/io/SerializableHdf5Reader00.cpp
| | | | | M	src/shogun/io/SerializableJsonFile.cpp
| | | | | M	src/shogun/io/SerializableJsonReader00.cpp
| | | | | M	src/shogun/io/SerializableXmlFile.cpp
| | | | | M	src/shogun/io/SerializableXmlReader00.cpp
| | | | |      
* | | | | commit e70754fdb1a5cc9abc5ef39825e6954e5f472a19
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:56:49 2011 +0200
| | | | | 
| | | | |     split up modular Library interface into Library, Mathematics and IO
| | | | | 
| | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | | | M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| | | | | M	examples/undocumented/python_modular/features_io_modular.py
| | | | | M	examples/undocumented/python_modular/features_string_file_modular.py
| | | | | M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| | | | | M	examples/undocumented/python_modular/kernel_io_modular.py
| | | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | | M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| | | | | A	src/interfaces/modular/IO.doxy
| | | | | A	src/interfaces/modular/IO.i
| | | | | A	src/interfaces/modular/IO_includes.i
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | A	src/interfaces/modular/Mathematics.doxy
| | | | | A	src/interfaces/modular/Mathematics.i
| | | | | A	src/interfaces/modular/Mathematics_includes.i
| | | | |      
* | | | | commit 85442d2d49003aff902975d2d5fe9925ebd92864
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:28:55 2011 +0200
| | | | | 
| | | | |     don't try to remove shogun on distclean
| | | | | 
| | | | | M	src/Makefile
| | | | |      
* | | | | commit 65694368b5c7fac9c61de6d7cdc688fc2afa9f1c
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 22:24:56 2011 +0200
| | | | | 
| | | | |     split up lib/ into io/ lib/ mathematics/ for clarity
| | | | | 
| | | | | M	src/README.developer
| | | | | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | | | | M	src/interfaces/csharp_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/java_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/lua_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/modular/Library.i
| | | | | M	src/interfaces/modular/Library_includes.i
| | | | | M	src/interfaces/modular/SGBase.i
| | | | | M	src/interfaces/octave_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/octave_static/OctaveInterface.cpp
| | | | | M	src/interfaces/python_modular/sg_print_functions.cpp
| | | | | M	src/interfaces/python_static/PythonInterface.cpp
| | | | | M	src/interfaces/r_static/RInterface.cpp
| | | | | M	src/interfaces/ruby_modular/sg_print_functions.cpp
| | | | | M	src/shogun/base/DynArray.h
| | | | | M	src/shogun/base/Parallel.h
| | | | | M	src/shogun/base/Parameter.h
| | | | | M	src/shogun/base/SGObject.cpp
| | | | | M	src/shogun/base/SGObject.h
| | | | | M	src/shogun/base/Version.h
| | | | | M	src/shogun/base/init.cpp
| | | | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | | M	src/shogun/classifier/KNN.cpp
| | | | | M	src/shogun/classifier/KNN.h
| | | | | M	src/shogun/classifier/KernelPerceptron.cpp
| | | | | M	src/shogun/classifier/LDA.cpp
| | | | | M	src/shogun/classifier/LPBoost.cpp
| | | | | M	src/shogun/classifier/LPM.cpp
| | | | | M	src/shogun/classifier/Perceptron.cpp
| | | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | | M	src/shogun/classifier/SubGradientLPM.cpp
| | | | | M	src/shogun/classifier/SubGradientLPM.h
| | | | | D	src/shogun/classifier/__init__.py
| | | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.cpp
| | | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | | M	src/shogun/classifier/svm/LaRank.h
| | | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | | M	src/shogun/classifier/svm/Tron.cpp
| | | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | | | D	src/shogun/classifier/svm/__init__.py
| | | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | | M	src/shogun/clustering/GMM.cpp
| | | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | | M	src/shogun/clustering/Hierarchical.h
| | | | | M	src/shogun/clustering/KMeans.cpp
| | | | | M	src/shogun/clustering/KMeans.h
| | | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | | M	src/shogun/distance/CosineDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.cpp
| | | | | M	src/shogun/distance/CustomDistance.h
| | | | | M	src/shogun/distance/Distance.cpp
| | | | | M	src/shogun/distance/Distance.h
| | | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | | M	src/shogun/distance/JensenMetric.cpp
| | | | | M	src/shogun/distance/KernelDistance.cpp
| | | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | | M	src/shogun/distance/SimpleDistance.h
| | | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | | M	src/shogun/distributions/Distribution.cpp
| | | | | M	src/shogun/distributions/Distribution.h
| | | | | M	src/shogun/distributions/GHMM.h
| | | | | M	src/shogun/distributions/Gaussian.cpp
| | | | | M	src/shogun/distributions/Gaussian.h
| | | | | M	src/shogun/distributions/HMM.cpp
| | | | | M	src/shogun/distributions/HMM.h
| | | | | M	src/shogun/distributions/Histogram.cpp
| | | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | | M	src/shogun/distributions/PositionalPWM.h
| | | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/shogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | | | M	src/shogun/features/Alphabet.cpp
| | | | | M	src/shogun/features/Alphabet.h
| | | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.cpp
| | | | | M	src/shogun/features/DotFeatures.h
| | | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | | M	src/shogun/features/FKFeatures.cpp
| | | | | M	src/shogun/features/Features.cpp
| | | | | M	src/shogun/features/Features.h
| | | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | | M	src/shogun/features/Labels.cpp
| | | | | M	src/shogun/features/Labels.h
| | | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | | M	src/shogun/features/SNPFeatures.cpp
| | | | | M	src/shogun/features/SimpleFeatures.h
| | | | | M	src/shogun/features/SparseFeatures.h
| | | | | M	src/shogun/features/StreamingDotFeatures.h
| | | | | M	src/shogun/features/StreamingFeatures.h
| | | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | | M	src/shogun/features/StringFeatures.h
| | | | | M	src/shogun/features/StringFileFeatures.h
| | | | | M	src/shogun/features/Subset.cpp
| | | | | M	src/shogun/features/TOPFeatures.cpp
| | | | | M	src/shogun/features/WDFeatures.cpp
| | | | | D	src/shogun/features/__init__.py
| | | | | A	src/shogun/io/AsciiFile.cpp
| | | | | A	src/shogun/io/AsciiFile.h
| | | | | A	src/shogun/io/BinaryFile.cpp
| | | | | A	src/shogun/io/BinaryFile.h
| | | | | A	src/shogun/io/BinaryStream.h
| | | | | A	src/shogun/io/File.cpp
| | | | | A	src/shogun/io/File.h
| | | | | A	src/shogun/io/HDF5File.cpp
| | | | | A	src/shogun/io/HDF5File.h
| | | | | A	src/shogun/io/IOBuffer.cpp
| | | | | A	src/shogun/io/IOBuffer.h
| | | | | A	src/shogun/io/InputParser.h
| | | | | A	src/shogun/io/LibSVMFile.h
| | | | | A	src/shogun/io/MemoryMappedFile.h
| | | | | A	src/shogun/io/ParseBuffer.h
| | | | | A	src/shogun/io/SerializableAsciiFile.cpp
| | | | | A	src/shogun/io/SerializableAsciiFile.h
| | | | | A	src/shogun/io/SerializableAsciiReader00.cpp
| | | | | A	src/shogun/io/SerializableAsciiReader00.h
| | | | | A	src/shogun/io/SerializableFile.cpp
| | | | | A	src/shogun/io/SerializableFile.h
| | | | | A	src/shogun/io/SerializableHdf5File.cpp
| | | | | A	src/shogun/io/SerializableHdf5File.h
| | | | | A	src/shogun/io/SerializableHdf5Reader00.cpp
| | | | | A	src/shogun/io/SerializableHdf5Reader00.h
| | | | | A	src/shogun/io/SerializableJsonFile.cpp
| | | | | A	src/shogun/io/SerializableJsonFile.h
| | | | | A	src/shogun/io/SerializableJsonReader00.cpp
| | | | | A	src/shogun/io/SerializableJsonReader00.h
| | | | | A	src/shogun/io/SerializableXmlFile.cpp
| | | | | A	src/shogun/io/SerializableXmlFile.h
| | | | | A	src/shogun/io/SerializableXmlReader00.cpp
| | | | | A	src/shogun/io/SerializableXmlReader00.h
| | | | | A	src/shogun/io/SimpleFile.h
| | | | | A	src/shogun/io/StreamingAsciiFile.cpp
| | | | | A	src/shogun/io/StreamingAsciiFile.h
| | | | | A	src/shogun/io/StreamingFile.cpp
| | | | | A	src/shogun/io/StreamingFile.h
| | | | | A	src/shogun/io/StreamingFileFromFeatures.cpp
| | | | | A	src/shogun/io/StreamingFileFromFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromSimpleFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromSparseFeatures.h
| | | | | A	src/shogun/io/StreamingFileFromStringFeatures.h
| | | | | A	src/shogun/io/io.cpp
| | | | | A	src/shogun/io/io.h
| | | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | | M	src/shogun/kernel/CombinedKernel.h
| | | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | | M	src/shogun/kernel/CommUlongStringKernel.h
| | | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/CommWordStringKernel.h
| | | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | | M	src/shogun/kernel/ConstKernel.h
| | | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | | M	src/shogun/kernel/CustomKernel.h
| | | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | | M	src/shogun/kernel/DotKernel.h
| | | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | M	src/shogun/kernel/Kernel.cpp
| | | | | M	src/shogun/kernel/Kernel.h
| | | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/LogKernel.cpp
| | | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | | D	src/shogun/kernel/__init__.py
| | | | | D	src/shogun/lib/AsciiFile.cpp
| | | | | D	src/shogun/lib/AsciiFile.h
| | | | | D	src/shogun/lib/BinaryFile.cpp
| | | | | D	src/shogun/lib/BinaryFile.h
| | | | | D	src/shogun/lib/BinaryStream.h
| | | | | M	src/shogun/lib/BitString.h
| | | | | M	src/shogun/lib/Cache.h
| | | | | M	src/shogun/lib/Compressor.cpp
| | | | | M	src/shogun/lib/Compressor.h
| | | | | D	src/shogun/lib/Cplex.cpp
| | | | | D	src/shogun/lib/Cplex.h
| | | | | M	src/shogun/lib/DynInt.h
| | | | | D	src/shogun/lib/File.cpp
| | | | | D	src/shogun/lib/File.h
| | | | | D	src/shogun/lib/HDF5File.cpp
| | | | | D	src/shogun/lib/HDF5File.h
| | | | | D	src/shogun/lib/IOBuffer.cpp
| | | | | D	src/shogun/lib/IOBuffer.h
| | | | | D	src/shogun/lib/InputParser.h
| | | | | D	src/shogun/lib/LibSVMFile.h
| | | | | D	src/shogun/lib/Loss.h
| | | | | D	src/shogun/lib/Mathematics.cpp
| | | | | D	src/shogun/lib/Mathematics.h
| | | | | D	src/shogun/lib/MemoryMappedFile.h
| | | | | D	src/shogun/lib/ParseBuffer.h
| | | | | D	src/shogun/lib/SerializableAsciiFile.cpp
| | | | | D	src/shogun/lib/SerializableAsciiFile.h
| | | | | D	src/shogun/lib/SerializableAsciiReader00.cpp
| | | | | D	src/shogun/lib/SerializableAsciiReader00.h
| | | | | D	src/shogun/lib/SerializableFile.cpp
| | | | | D	src/shogun/lib/SerializableFile.h
| | | | | D	src/shogun/lib/SerializableHdf5File.cpp
| | | | | D	src/shogun/lib/SerializableHdf5File.h
| | | | | D	src/shogun/lib/SerializableHdf5Reader00.cpp
| | | | | D	src/shogun/lib/SerializableHdf5Reader00.h
| | | | | D	src/shogun/lib/SerializableJsonFile.cpp
| | | | | D	src/shogun/lib/SerializableJsonFile.h
| | | | | D	src/shogun/lib/SerializableJsonReader00.cpp
| | | | | D	src/shogun/lib/SerializableJsonReader00.h
| | | | | D	src/shogun/lib/SerializableXmlFile.cpp
| | | | | D	src/shogun/lib/SerializableXmlFile.h
| | | | | D	src/shogun/lib/SerializableXmlReader00.cpp
| | | | | D	src/shogun/lib/SerializableXmlReader00.h
| | | | | M	src/shogun/lib/Set.h
| | | | | M	src/shogun/lib/Signal.cpp
| | | | | D	src/shogun/lib/SimpleFile.h
| | | | | D	src/shogun/lib/StreamingAsciiFile.cpp
| | | | | D	src/shogun/lib/StreamingAsciiFile.h
| | | | | D	src/shogun/lib/StreamingFile.cpp
| | | | | D	src/shogun/lib/StreamingFile.h
| | | | | D	src/shogun/lib/StreamingFileFromFeatures.cpp
| | | | | D	src/shogun/lib/StreamingFileFromFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | | | | D	src/shogun/lib/StreamingFileFromStringFeatures.h
| | | | | M	src/shogun/lib/Time.cpp
| | | | | M	src/shogun/lib/Time.h
| | | | | M	src/shogun/lib/Trie.cpp
| | | | | M	src/shogun/lib/Trie.h
| | | | | D	src/shogun/lib/__init__.py
| | | | | D	src/shogun/lib/arpack.cpp
| | | | | D	src/shogun/lib/arpack.h
| | | | | D	src/shogun/lib/io.cpp
| | | | | D	src/shogun/lib/io.h
| | | | | D	src/shogun/lib/lapack.cpp
| | | | | D	src/shogun/lib/lapack.h
| | | | | M	src/shogun/machine/KernelMachine.h
| | | | | M	src/shogun/machine/Machine.h
| | | | | A	src/shogun/mathematics/Cplex.cpp
| | | | | A	src/shogun/mathematics/Cplex.h
| | | | | A	src/shogun/mathematics/Loss.h
| | | | | A	src/shogun/mathematics/Math.cpp
| | | | | A	src/shogun/mathematics/Math.h
| | | | | A	src/shogun/mathematics/arpack.cpp
| | | | | A	src/shogun/mathematics/arpack.h
| | | | | A	src/shogun/mathematics/lapack.cpp
| | | | | A	src/shogun/mathematics/lapack.h
| | | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/shogun/preprocessor/Isomap.h
| | | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | | M	src/shogun/preprocessor/LogPlusOne.cpp
| | | | | M	src/shogun/preprocessor/NormOne.cpp
| | | | | M	src/shogun/preprocessor/PCA.cpp
| | | | | M	src/shogun/preprocessor/PCA.h
| | | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | | | | M	src/shogun/preprocessor/SortUlongString.cpp
| | | | | M	src/shogun/preprocessor/SortWordString.cpp
| | | | | M	src/shogun/regression/KRR.cpp
| | | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | | M	src/shogun/structure/DynProg.cpp
| | | | | M	src/shogun/structure/DynProg.h
| | | | | M	src/shogun/structure/IntronList.cpp
| | | | | M	src/shogun/structure/Plif.cpp
| | | | | M	src/shogun/structure/Plif.h
| | | | | M	src/shogun/structure/PlifArray.cpp
| | | | | M	src/shogun/structure/PlifArray.h
| | | | | M	src/shogun/structure/PlifBase.h
| | | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | | M	src/shogun/ui/GUIDistance.cpp
| | | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | | M	src/shogun/ui/GUIKernel.cpp
| | | | | M	src/shogun/ui/GUILabels.cpp
| | | | | M	src/shogun/ui/GUIMath.cpp
| | | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | | M	src/shogun/ui/GUISignals.cpp.orig
| | | | | M	src/shogun/ui/GUIStructure.cpp
| | | | | M	src/shogun/ui/SGInterface.cpp
| | | | |      
* | | | | commit 245cf3e996c2c93397f8b053da3658bdf11b6acb
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 21:30:14 2011 +0200
| | | | | 
| | | | |     remove sed -i operation on shogun dir - no longer necessary with new
| | | | |     directory layout
| | | | | 
| | | | | M	src/Makefile.template
| | | | |      
* | | | | commit bf5a3a340c0cb77adf77aa47cd6ac1ec06d0d543
| |_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Mon Jul 18 21:29:44 2011 +0200
| | | |   
| | | |       remove shogun from ignored dirs since that is now the main shogun aka
| | | |       libshogun dir
| | | |   
| | | |   M	.gitignore
| | | |       
* | | |   commit d67fba135096bc7e0781a5df2bb736f73435e586
|\ \ \ \  Merge: 8e49447 9541603
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jul 18 08:08:49 2011 -0700
| | | | | 
| | | | |     Merge pull request #208 from karlnapf/master
| | | | |     
| | | | |     Modelselection ->ModelSelection
| | | | |      
| * | | | commit 95416034bcaeb2a73b6463c36c4f3a06efa5e2e6
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 18 17:01:17 2011 +0200
| | | | | 
| | | | |     renamed Modelselection to ModelSelection
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | | | A	src/interfaces/modular/ModelSelection.doxy
| | | | | A	src/interfaces/modular/ModelSelection.i
| | | | | A	src/interfaces/modular/ModelSelection_includes.i
| | | | | D	src/interfaces/modular/Modelselection.doxy
| | | | | D	src/interfaces/modular/Modelselection.i
| | | | | D	src/interfaces/modular/Modelselection_includes.i
| | | | |      
* | | | | commit 8e49447cacb89df18751bcdd772cdce277ad4d8b
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Jul 18 16:59:17 2011 +0200
| | | |   
| | | |       test whether ant is installed (and disable java if not available)
| | | |   
| | | |   M	src/configure
| | | |     
* | | | commit e36498950e9d509792cb57ae543187ae728717bf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jul 18 15:38:32 2011 +0200
| | | | 
| | | |     change include paths to be all relative to /src, e.g.
| | | |     <shogun/features/SimpleFeatures.i>
| | | | 
| | | | M	src/shogun/base/DynArray.h
| | | | M	src/shogun/base/Parallel.cpp
| | | | M	src/shogun/base/Parallel.h
| | | | M	src/shogun/base/Parameter.cpp
| | | | M	src/shogun/base/Parameter.h
| | | | M	src/shogun/base/SGObject.cpp
| | | | M	src/shogun/base/SGObject.h
| | | | M	src/shogun/base/Version.cpp
| | | | M	src/shogun/base/Version.h
| | | | M	src/shogun/base/class_list.h
| | | | M	src/shogun/base/init.cpp
| | | | M	src/shogun/classifier/AveragedPerceptron.cpp
| | | | M	src/shogun/classifier/AveragedPerceptron.h
| | | | M	src/shogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/shogun/classifier/GaussianNaiveBayes.h
| | | | M	src/shogun/classifier/KNN.cpp
| | | | M	src/shogun/classifier/KNN.h
| | | | M	src/shogun/classifier/KernelPerceptron.cpp
| | | | M	src/shogun/classifier/KernelPerceptron.h
| | | | M	src/shogun/classifier/LDA.cpp
| | | | M	src/shogun/classifier/LDA.h
| | | | M	src/shogun/classifier/LPBoost.cpp
| | | | M	src/shogun/classifier/LPBoost.h
| | | | M	src/shogun/classifier/LPM.cpp
| | | | M	src/shogun/classifier/LPM.h
| | | | M	src/shogun/classifier/Perceptron.cpp
| | | | M	src/shogun/classifier/Perceptron.h
| | | | M	src/shogun/classifier/PluginEstimate.cpp
| | | | M	src/shogun/classifier/PluginEstimate.h
| | | | M	src/shogun/classifier/SubGradientLPM.cpp
| | | | M	src/shogun/classifier/SubGradientLPM.h
| | | | M	src/shogun/classifier/mkl/MKL.cpp
| | | | M	src/shogun/classifier/mkl/MKL.h
| | | | M	src/shogun/classifier/mkl/MKLClassification.cpp
| | | | M	src/shogun/classifier/mkl/MKLClassification.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClass.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | | | M	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | | | M	src/shogun/classifier/mkl/MKLOneClass.cpp
| | | | M	src/shogun/classifier/mkl/MKLOneClass.h
| | | | M	src/shogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/shogun/classifier/svm/CPLEXSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | M	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | M	src/shogun/classifier/svm/GMNPLib.cpp
| | | | M	src/shogun/classifier/svm/GMNPLib.h
| | | | M	src/shogun/classifier/svm/GMNPSVM.cpp
| | | | M	src/shogun/classifier/svm/GMNPSVM.h
| | | | M	src/shogun/classifier/svm/GNPPLib.cpp
| | | | M	src/shogun/classifier/svm/GNPPLib.h
| | | | M	src/shogun/classifier/svm/GNPPSVM.cpp
| | | | M	src/shogun/classifier/svm/GNPPSVM.h
| | | | M	src/shogun/classifier/svm/GPBTSVM.cpp
| | | | M	src/shogun/classifier/svm/GPBTSVM.h
| | | | M	src/shogun/classifier/svm/LaRank.cpp
| | | | M	src/shogun/classifier/svm/LaRank.h
| | | | M	src/shogun/classifier/svm/LibLinear.cpp
| | | | M	src/shogun/classifier/svm/LibLinear.h
| | | | M	src/shogun/classifier/svm/LibSVM.cpp
| | | | M	src/shogun/classifier/svm/LibSVM.h
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMMultiClass.h
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | | | M	src/shogun/classifier/svm/LibSVMOneClass.h
| | | | M	src/shogun/classifier/svm/MPDSVM.cpp
| | | | M	src/shogun/classifier/svm/MPDSVM.h
| | | | M	src/shogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/shogun/classifier/svm/MultiClassSVM.h
| | | | M	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | | | M	src/shogun/classifier/svm/OnlineLibLinear.h
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/shogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/shogun/classifier/svm/QPBSVMLib.cpp
| | | | M	src/shogun/classifier/svm/QPBSVMLib.h
| | | | M	src/shogun/classifier/svm/SGDQN.cpp
| | | | M	src/shogun/classifier/svm/SGDQN.h
| | | | M	src/shogun/classifier/svm/SVM.cpp
| | | | M	src/shogun/classifier/svm/SVM.h
| | | | M	src/shogun/classifier/svm/SVMLight.cpp
| | | | M	src/shogun/classifier/svm/SVMLight.h
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | | | M	src/shogun/classifier/svm/SVMLightOneClass.h
| | | | M	src/shogun/classifier/svm/SVMLin.cpp
| | | | M	src/shogun/classifier/svm/SVMLin.h
| | | | M	src/shogun/classifier/svm/SVMOcas.cpp
| | | | M	src/shogun/classifier/svm/SVMOcas.h
| | | | M	src/shogun/classifier/svm/SVMSGD.cpp
| | | | M	src/shogun/classifier/svm/SVMSGD.h
| | | | M	src/shogun/classifier/svm/SVM_libsvm.cpp
| | | | M	src/shogun/classifier/svm/SVM_libsvm.h
| | | | M	src/shogun/classifier/svm/SVM_linear.cpp
| | | | M	src/shogun/classifier/svm/SVM_linear.h
| | | | M	src/shogun/classifier/svm/ScatterSVM.cpp
| | | | M	src/shogun/classifier/svm/ScatterSVM.h
| | | | M	src/shogun/classifier/svm/SubGradientSVM.cpp
| | | | M	src/shogun/classifier/svm/SubGradientSVM.h
| | | | M	src/shogun/classifier/svm/Tron.cpp
| | | | M	src/shogun/classifier/svm/Tron.h
| | | | M	src/shogun/classifier/svm/WDSVMOcas.cpp
| | | | M	src/shogun/classifier/svm/WDSVMOcas.h
| | | | M	src/shogun/classifier/svm/gpdt.cpp
| | | | M	src/shogun/classifier/svm/gpdt.h
| | | | M	src/shogun/classifier/svm/gpdtsolve.cpp
| | | | M	src/shogun/classifier/svm/gpdtsolve.h
| | | | M	src/shogun/classifier/svm/gpm.cpp
| | | | M	src/shogun/classifier/svm/gpm.h
| | | | M	src/shogun/classifier/svm/libocas.cpp
| | | | M	src/shogun/classifier/svm/libocas.h
| | | | M	src/shogun/classifier/svm/libocas_common.h
| | | | M	src/shogun/classifier/svm/libqp.h
| | | | M	src/shogun/classifier/svm/libqp_splx.cpp
| | | | M	src/shogun/classifier/svm/pr_loqo.cpp
| | | | M	src/shogun/classifier/svm/ssl.cpp
| | | | M	src/shogun/classifier/svm/ssl.h
| | | | M	src/shogun/clustering/GMM.cpp
| | | | M	src/shogun/clustering/GMM.h
| | | | M	src/shogun/clustering/Hierarchical.cpp
| | | | M	src/shogun/clustering/Hierarchical.h
| | | | M	src/shogun/clustering/KMeans.cpp
| | | | M	src/shogun/clustering/KMeans.h
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | | | M	src/shogun/distance/AttenuatedEuclidianDistance.h
| | | | M	src/shogun/distance/BrayCurtisDistance.cpp
| | | | M	src/shogun/distance/BrayCurtisDistance.h
| | | | M	src/shogun/distance/CanberraMetric.cpp
| | | | M	src/shogun/distance/CanberraMetric.h
| | | | M	src/shogun/distance/CanberraWordDistance.cpp
| | | | M	src/shogun/distance/CanberraWordDistance.h
| | | | M	src/shogun/distance/ChebyshewMetric.cpp
| | | | M	src/shogun/distance/ChebyshewMetric.h
| | | | M	src/shogun/distance/ChiSquareDistance.cpp
| | | | M	src/shogun/distance/ChiSquareDistance.h
| | | | M	src/shogun/distance/CosineDistance.cpp
| | | | M	src/shogun/distance/CosineDistance.h
| | | | M	src/shogun/distance/CustomDistance.cpp
| | | | M	src/shogun/distance/CustomDistance.h
| | | | M	src/shogun/distance/Distance.cpp
| | | | M	src/shogun/distance/Distance.h
| | | | M	src/shogun/distance/EuclidianDistance.cpp
| | | | M	src/shogun/distance/EuclidianDistance.h
| | | | M	src/shogun/distance/GeodesicMetric.cpp
| | | | M	src/shogun/distance/GeodesicMetric.h
| | | | M	src/shogun/distance/HammingWordDistance.cpp
| | | | M	src/shogun/distance/HammingWordDistance.h
| | | | M	src/shogun/distance/JensenMetric.cpp
| | | | M	src/shogun/distance/JensenMetric.h
| | | | M	src/shogun/distance/KernelDistance.cpp
| | | | M	src/shogun/distance/KernelDistance.h
| | | | M	src/shogun/distance/ManhattanMetric.cpp
| | | | M	src/shogun/distance/ManhattanMetric.h
| | | | M	src/shogun/distance/ManhattanWordDistance.cpp
| | | | M	src/shogun/distance/ManhattanWordDistance.h
| | | | M	src/shogun/distance/MinkowskiMetric.cpp
| | | | M	src/shogun/distance/MinkowskiMetric.h
| | | | M	src/shogun/distance/RealDistance.h
| | | | M	src/shogun/distance/SimpleDistance.h
| | | | M	src/shogun/distance/SparseDistance.h
| | | | M	src/shogun/distance/SparseEuclidianDistance.cpp
| | | | M	src/shogun/distance/SparseEuclidianDistance.h
| | | | M	src/shogun/distance/StringDistance.h
| | | | M	src/shogun/distance/TanimotoDistance.cpp
| | | | M	src/shogun/distance/TanimotoDistance.h
| | | | M	src/shogun/distributions/Distribution.cpp
| | | | M	src/shogun/distributions/Distribution.h
| | | | M	src/shogun/distributions/GHMM.cpp
| | | | M	src/shogun/distributions/GHMM.h
| | | | M	src/shogun/distributions/Gaussian.cpp
| | | | M	src/shogun/distributions/Gaussian.h
| | | | M	src/shogun/distributions/HMM.cpp
| | | | M	src/shogun/distributions/HMM.h
| | | | M	src/shogun/distributions/Histogram.cpp
| | | | M	src/shogun/distributions/Histogram.h
| | | | M	src/shogun/distributions/LinearHMM.cpp
| | | | M	src/shogun/distributions/LinearHMM.h
| | | | M	src/shogun/distributions/PositionalPWM.cpp
| | | | M	src/shogun/distributions/PositionalPWM.h
| | | | M	src/shogun/evaluation/BinaryClassEvaluation.h
| | | | M	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| | | | M	src/shogun/evaluation/ContingencyTableEvaluation.h
| | | | M	src/shogun/evaluation/CrossValidation.cpp
| | | | M	src/shogun/evaluation/CrossValidation.h
| | | | M	src/shogun/evaluation/Evaluation.h
| | | | M	src/shogun/evaluation/MeanSquaredError.cpp
| | | | M	src/shogun/evaluation/MeanSquaredError.h
| | | | M	src/shogun/evaluation/MulticlassAccuracy.cpp
| | | | M	src/shogun/evaluation/MulticlassAccuracy.h
| | | | M	src/shogun/evaluation/PRCEvaluation.cpp
| | | | M	src/shogun/evaluation/PRCEvaluation.h
| | | | M	src/shogun/evaluation/ROCEvaluation.cpp
| | | | M	src/shogun/evaluation/ROCEvaluation.h
| | | | M	src/shogun/evaluation/SplittingStrategy.cpp
| | | | M	src/shogun/evaluation/SplittingStrategy.h
| | | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | | | M	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | | | M	src/shogun/features/Alphabet.cpp
| | | | M	src/shogun/features/Alphabet.h
| | | | M	src/shogun/features/AttributeFeatures.cpp
| | | | M	src/shogun/features/AttributeFeatures.h
| | | | M	src/shogun/features/CombinedDotFeatures.cpp
| | | | M	src/shogun/features/CombinedDotFeatures.h
| | | | M	src/shogun/features/CombinedFeatures.cpp
| | | | M	src/shogun/features/CombinedFeatures.h
| | | | M	src/shogun/features/DotFeatures.cpp
| | | | M	src/shogun/features/DotFeatures.h
| | | | M	src/shogun/features/DummyFeatures.h
| | | | M	src/shogun/features/ExplicitSpecFeatures.cpp
| | | | M	src/shogun/features/ExplicitSpecFeatures.h
| | | | M	src/shogun/features/FKFeatures.cpp
| | | | M	src/shogun/features/FKFeatures.h
| | | | M	src/shogun/features/Features.cpp
| | | | M	src/shogun/features/Features.h
| | | | M	src/shogun/features/HashedWDFeatures.cpp
| | | | M	src/shogun/features/HashedWDFeatures.h
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | | | M	src/shogun/features/HashedWDFeaturesTransposed.h
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | | | M	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | | | M	src/shogun/features/LBPPyrDotFeatures.cpp
| | | | M	src/shogun/features/LBPPyrDotFeatures.h
| | | | M	src/shogun/features/Labels.cpp
| | | | M	src/shogun/features/Labels.h
| | | | M	src/shogun/features/PolyFeatures.cpp
| | | | M	src/shogun/features/PolyFeatures.h
| | | | M	src/shogun/features/RealFileFeatures.cpp
| | | | M	src/shogun/features/RealFileFeatures.h
| | | | M	src/shogun/features/SNPFeatures.cpp
| | | | M	src/shogun/features/SNPFeatures.h
| | | | M	src/shogun/features/SimpleFeatures.h
| | | | M	src/shogun/features/SparseFeatures.h
| | | | M	src/shogun/features/SparsePolyFeatures.cpp
| | | | M	src/shogun/features/SparsePolyFeatures.h
| | | | M	src/shogun/features/StreamingDotFeatures.h
| | | | M	src/shogun/features/StreamingFeatures.h
| | | | M	src/shogun/features/StreamingSimpleFeatures.h
| | | | M	src/shogun/features/StreamingSparseFeatures.h
| | | | M	src/shogun/features/StreamingStringFeatures.h
| | | | M	src/shogun/features/StringFeatures.h
| | | | M	src/shogun/features/StringFileFeatures.h
| | | | M	src/shogun/features/Subset.cpp
| | | | M	src/shogun/features/Subset.h
| | | | M	src/shogun/features/TOPFeatures.cpp
| | | | M	src/shogun/features/TOPFeatures.h
| | | | M	src/shogun/features/WDFeatures.cpp
| | | | M	src/shogun/features/WDFeatures.h
| | | | M	src/shogun/kernel/ANOVAKernel.cpp
| | | | M	src/shogun/kernel/ANOVAKernel.h
| | | | M	src/shogun/kernel/AUCKernel.cpp
| | | | M	src/shogun/kernel/AUCKernel.h
| | | | M	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | | | M	src/shogun/kernel/BesselKernel.cpp
| | | | M	src/shogun/kernel/BesselKernel.h
| | | | M	src/shogun/kernel/CauchyKernel.cpp
| | | | M	src/shogun/kernel/CauchyKernel.h
| | | | M	src/shogun/kernel/Chi2Kernel.cpp
| | | | M	src/shogun/kernel/Chi2Kernel.h
| | | | M	src/shogun/kernel/CircularKernel.cpp
| | | | M	src/shogun/kernel/CircularKernel.h
| | | | M	src/shogun/kernel/CombinedKernel.cpp
| | | | M	src/shogun/kernel/CombinedKernel.h
| | | | M	src/shogun/kernel/CommUlongStringKernel.cpp
| | | | M	src/shogun/kernel/CommUlongStringKernel.h
| | | | M	src/shogun/kernel/CommWordStringKernel.cpp
| | | | M	src/shogun/kernel/CommWordStringKernel.h
| | | | M	src/shogun/kernel/ConstKernel.cpp
| | | | M	src/shogun/kernel/ConstKernel.h
| | | | M	src/shogun/kernel/CustomKernel.cpp
| | | | M	src/shogun/kernel/CustomKernel.h
| | | | M	src/shogun/kernel/DiagKernel.cpp
| | | | M	src/shogun/kernel/DiagKernel.h
| | | | M	src/shogun/kernel/DiceKernelNormalizer.h
| | | | M	src/shogun/kernel/DistanceKernel.cpp
| | | | M	src/shogun/kernel/DistanceKernel.h
| | | | M	src/shogun/kernel/DistantSegmentsKernel.cpp
| | | | M	src/shogun/kernel/DistantSegmentsKernel.h
| | | | M	src/shogun/kernel/DotKernel.h
| | | | M	src/shogun/kernel/ExponentialKernel.cpp
| | | | M	src/shogun/kernel/ExponentialKernel.h
| | | | M	src/shogun/kernel/FirstElementKernelNormalizer.h
| | | | M	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | | | M	src/shogun/kernel/FixedDegreeStringKernel.h
| | | | M	src/shogun/kernel/GaussianKernel.cpp
| | | | M	src/shogun/kernel/GaussianKernel.h
| | | | M	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | | | M	src/shogun/kernel/GaussianMatchStringKernel.h
| | | | M	src/shogun/kernel/GaussianShiftKernel.cpp
| | | | M	src/shogun/kernel/GaussianShiftKernel.h
| | | | M	src/shogun/kernel/GaussianShortRealKernel.cpp
| | | | M	src/shogun/kernel/GaussianShortRealKernel.h
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | | | M	src/shogun/kernel/HistogramIntersectionKernel.h
| | | | M	src/shogun/kernel/HistogramWordStringKernel.cpp
| | | | M	src/shogun/kernel/HistogramWordStringKernel.h
| | | | M	src/shogun/kernel/IdentityKernelNormalizer.h
| | | | M	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | | | M	src/shogun/kernel/InverseMultiQuadricKernel.h
| | | | M	src/shogun/kernel/Kernel.cpp
| | | | M	src/shogun/kernel/Kernel.h
| | | | M	src/shogun/kernel/KernelNormalizer.h
| | | | M	src/shogun/kernel/LinearKernel.cpp
| | | | M	src/shogun/kernel/LinearKernel.h
| | | | M	src/shogun/kernel/LinearStringKernel.cpp
| | | | M	src/shogun/kernel/LinearStringKernel.h
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | | | M	src/shogun/kernel/LocalAlignmentStringKernel.h
| | | | M	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | | | M	src/shogun/kernel/LocalityImprovedStringKernel.h
| | | | M	src/shogun/kernel/LogKernel.cpp
| | | | M	src/shogun/kernel/LogKernel.h
| | | | M	src/shogun/kernel/MatchWordStringKernel.cpp
| | | | M	src/shogun/kernel/MatchWordStringKernel.h
| | | | M	src/shogun/kernel/MultiquadricKernel.cpp
| | | | M	src/shogun/kernel/MultiquadricKernel.h
| | | | M	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelMklNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | M	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | | | M	src/shogun/kernel/OligoStringKernel.cpp
| | | | M	src/shogun/kernel/OligoStringKernel.h
| | | | M	src/shogun/kernel/PolyKernel.cpp
| | | | M	src/shogun/kernel/PolyKernel.h
| | | | M	src/shogun/kernel/PolyMatchStringKernel.cpp
| | | | M	src/shogun/kernel/PolyMatchStringKernel.h
| | | | M	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | | | M	src/shogun/kernel/PolyMatchWordStringKernel.h
| | | | M	src/shogun/kernel/PowerKernel.cpp
| | | | M	src/shogun/kernel/PowerKernel.h
| | | | M	src/shogun/kernel/PyramidChi2.cpp
| | | | M	src/shogun/kernel/PyramidChi2.h
| | | | M	src/shogun/kernel/RationalQuadraticKernel.cpp
| | | | M	src/shogun/kernel/RationalQuadraticKernel.h
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | M	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | | | M	src/shogun/kernel/RidgeKernelNormalizer.h
| | | | M	src/shogun/kernel/SNPStringKernel.cpp
| | | | M	src/shogun/kernel/SNPStringKernel.h
| | | | M	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | | | M	src/shogun/kernel/SalzbergWordStringKernel.h
| | | | M	src/shogun/kernel/ScatterKernelNormalizer.h
| | | | M	src/shogun/kernel/SigmoidKernel.cpp
| | | | M	src/shogun/kernel/SigmoidKernel.h
| | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | | | M	src/shogun/kernel/SimpleLocalityImprovedStringKernel.h
| | | | M	src/shogun/kernel/SparseKernel.h
| | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | M	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | M	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | | | M	src/shogun/kernel/SpectrumRBFKernel.cpp
| | | | M	src/shogun/kernel/SpectrumRBFKernel.h
| | | | M	src/shogun/kernel/SphericalKernel.cpp
| | | | M	src/shogun/kernel/SphericalKernel.h
| | | | M	src/shogun/kernel/SplineKernel.cpp
| | | | M	src/shogun/kernel/SplineKernel.h
| | | | M	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | | | M	src/shogun/kernel/StringKernel.h
| | | | M	src/shogun/kernel/TStudentKernel.cpp
| | | | M	src/shogun/kernel/TStudentKernel.h
| | | | M	src/shogun/kernel/TanimotoKernelNormalizer.h
| | | | M	src/shogun/kernel/TensorProductPairKernel.cpp
| | | | M	src/shogun/kernel/TensorProductPairKernel.h
| | | | M	src/shogun/kernel/VarianceKernelNormalizer.h
| | | | M	src/shogun/kernel/WaveKernel.cpp
| | | | M	src/shogun/kernel/WaveKernel.h
| | | | M	src/shogun/kernel/WaveletKernel.cpp
| | | | M	src/shogun/kernel/WaveletKernel.h
| | | | M	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedCommWordStringKernel.h
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | | | M	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | | | M	src/shogun/kernel/WeightedDegreeStringKernel.h
| | | | M	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | | | M	src/shogun/lib/Array.h
| | | | M	src/shogun/lib/Array2.h
| | | | M	src/shogun/lib/Array3.h
| | | | M	src/shogun/lib/AsciiFile.cpp
| | | | M	src/shogun/lib/AsciiFile.h
| | | | M	src/shogun/lib/BinaryFile.cpp
| | | | M	src/shogun/lib/BinaryFile.h
| | | | M	src/shogun/lib/BinaryStream.h
| | | | M	src/shogun/lib/BitString.h
| | | | M	src/shogun/lib/Cache.h
| | | | M	src/shogun/lib/Compressor.cpp
| | | | M	src/shogun/lib/Compressor.h
| | | | M	src/shogun/lib/Cplex.cpp
| | | | M	src/shogun/lib/Cplex.h
| | | | M	src/shogun/lib/DataType.cpp
| | | | M	src/shogun/lib/DataType.h
| | | | M	src/shogun/lib/DynInt.h
| | | | M	src/shogun/lib/DynamicArray.h
| | | | M	src/shogun/lib/DynamicObjectArray.h
| | | | M	src/shogun/lib/File.cpp
| | | | M	src/shogun/lib/File.h
| | | | M	src/shogun/lib/GCArray.h
| | | | M	src/shogun/lib/HDF5File.cpp
| | | | M	src/shogun/lib/HDF5File.h
| | | | M	src/shogun/lib/Hash.cpp
| | | | M	src/shogun/lib/Hash.h
| | | | M	src/shogun/lib/IOBuffer.cpp
| | | | M	src/shogun/lib/IOBuffer.h
| | | | M	src/shogun/lib/IndirectObject.h
| | | | M	src/shogun/lib/InputParser.h
| | | | M	src/shogun/lib/LibSVMFile.h
| | | | M	src/shogun/lib/List.h
| | | | M	src/shogun/lib/Loss.h
| | | | M	src/shogun/lib/Mathematics.cpp
| | | | M	src/shogun/lib/Mathematics.h
| | | | M	src/shogun/lib/MemoryMappedFile.h
| | | | M	src/shogun/lib/ParseBuffer.h
| | | | M	src/shogun/lib/SerializableAsciiFile.cpp
| | | | M	src/shogun/lib/SerializableAsciiFile.h
| | | | M	src/shogun/lib/SerializableAsciiReader00.cpp
| | | | M	src/shogun/lib/SerializableAsciiReader00.h
| | | | M	src/shogun/lib/SerializableFile.cpp
| | | | M	src/shogun/lib/SerializableFile.h
| | | | M	src/shogun/lib/SerializableHdf5File.cpp
| | | | M	src/shogun/lib/SerializableHdf5File.h
| | | | M	src/shogun/lib/SerializableHdf5Reader00.cpp
| | | | M	src/shogun/lib/SerializableHdf5Reader00.h
| | | | M	src/shogun/lib/SerializableJsonFile.cpp
| | | | M	src/shogun/lib/SerializableJsonFile.h
| | | | M	src/shogun/lib/SerializableJsonReader00.cpp
| | | | M	src/shogun/lib/SerializableJsonReader00.h
| | | | M	src/shogun/lib/SerializableXmlFile.cpp
| | | | M	src/shogun/lib/SerializableXmlFile.h
| | | | M	src/shogun/lib/SerializableXmlReader00.cpp
| | | | M	src/shogun/lib/SerializableXmlReader00.h
| | | | M	src/shogun/lib/Set.h
| | | | M	src/shogun/lib/ShogunException.cpp
| | | | M	src/shogun/lib/Signal.cpp
| | | | M	src/shogun/lib/Signal.h
| | | | M	src/shogun/lib/SimpleFile.h
| | | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | | M	src/shogun/lib/StreamingAsciiFile.h
| | | | M	src/shogun/lib/StreamingFile.cpp
| | | | M	src/shogun/lib/StreamingFile.h
| | | | M	src/shogun/lib/StreamingFileFromFeatures.cpp
| | | | M	src/shogun/lib/StreamingFileFromFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | | | M	src/shogun/lib/StreamingFileFromStringFeatures.h
| | | | M	src/shogun/lib/Time.cpp
| | | | M	src/shogun/lib/Time.h
| | | | M	src/shogun/lib/Trie.cpp
| | | | M	src/shogun/lib/Trie.h
| | | | M	src/shogun/lib/arpack.cpp
| | | | M	src/shogun/lib/arpack.h
| | | | M	src/shogun/lib/common.h
| | | | M	src/shogun/lib/io.cpp
| | | | M	src/shogun/lib/io.h
| | | | M	src/shogun/lib/lapack.cpp
| | | | M	src/shogun/lib/lapack.h
| | | | M	src/shogun/lib/memory.cpp
| | | | M	src/shogun/machine/DistanceMachine.cpp
| | | | M	src/shogun/machine/DistanceMachine.h
| | | | M	src/shogun/machine/KernelMachine.cpp
| | | | M	src/shogun/machine/KernelMachine.h
| | | | M	src/shogun/machine/LinearMachine.cpp
| | | | M	src/shogun/machine/LinearMachine.h
| | | | M	src/shogun/machine/Machine.cpp
| | | | M	src/shogun/machine/Machine.h
| | | | M	src/shogun/machine/OnlineLinearMachine.cpp
| | | | M	src/shogun/machine/OnlineLinearMachine.h
| | | | M	src/shogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/shogun/modelselection/GridSearchModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelection.cpp
| | | | M	src/shogun/modelselection/ModelSelection.h
| | | | M	src/shogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/shogun/modelselection/ModelSelectionParameters.h
| | | | M	src/shogun/modelselection/ParameterCombination.cpp
| | | | M	src/shogun/modelselection/ParameterCombination.h
| | | | M	src/shogun/preprocessor/ClassicIsomap.h
| | | | M	src/shogun/preprocessor/ClassicMDS.cpp
| | | | M	src/shogun/preprocessor/ClassicMDS.h
| | | | M	src/shogun/preprocessor/DecompressString.h
| | | | M	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | | | M	src/shogun/preprocessor/Isomap.h
| | | | M	src/shogun/preprocessor/KernelPCACut.cpp
| | | | M	src/shogun/preprocessor/KernelPCACut.h
| | | | M	src/shogun/preprocessor/LandmarkIsomap.h
| | | | M	src/shogun/preprocessor/LandmarkMDS.cpp
| | | | M	src/shogun/preprocessor/LandmarkMDS.h
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/shogun/preprocessor/LogPlusOne.cpp
| | | | M	src/shogun/preprocessor/LogPlusOne.h
| | | | M	src/shogun/preprocessor/NormOne.cpp
| | | | M	src/shogun/preprocessor/NormOne.h
| | | | M	src/shogun/preprocessor/PCA.cpp
| | | | M	src/shogun/preprocessor/PCA.h
| | | | M	src/shogun/preprocessor/Preprocessor.cpp
| | | | M	src/shogun/preprocessor/Preprocessor.h
| | | | M	src/shogun/preprocessor/PruneVarSubMean.cpp
| | | | M	src/shogun/preprocessor/PruneVarSubMean.h
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | | | M	src/shogun/preprocessor/SimplePreprocessor.h
| | | | M	src/shogun/preprocessor/SortUlongString.cpp
| | | | M	src/shogun/preprocessor/SortUlongString.h
| | | | M	src/shogun/preprocessor/SortWordString.cpp
| | | | M	src/shogun/preprocessor/SortWordString.h
| | | | M	src/shogun/preprocessor/SparsePreprocessor.h
| | | | M	src/shogun/preprocessor/StringPreprocessor.h
| | | | M	src/shogun/regression/KRR.cpp
| | | | M	src/shogun/regression/KRR.h
| | | | M	src/shogun/regression/svr/LibSVR.cpp
| | | | M	src/shogun/regression/svr/LibSVR.h
| | | | M	src/shogun/regression/svr/MKLRegression.cpp
| | | | M	src/shogun/regression/svr/MKLRegression.h
| | | | M	src/shogun/regression/svr/SVRLight.cpp
| | | | M	src/shogun/regression/svr/SVRLight.h
| | | | M	src/shogun/structure/DynProg.cpp
| | | | M	src/shogun/structure/DynProg.h
| | | | M	src/shogun/structure/IntronList.cpp
| | | | M	src/shogun/structure/IntronList.h
| | | | M	src/shogun/structure/Plif.cpp
| | | | M	src/shogun/structure/Plif.h
| | | | M	src/shogun/structure/PlifArray.cpp
| | | | M	src/shogun/structure/PlifArray.h
| | | | M	src/shogun/structure/PlifBase.h
| | | | M	src/shogun/structure/PlifMatrix.cpp
| | | | M	src/shogun/structure/PlifMatrix.h
| | | | M	src/shogun/structure/SegmentLoss.cpp
| | | | M	src/shogun/structure/SegmentLoss.h
| | | | M	src/shogun/ui/GUIClassifier.cpp
| | | | M	src/shogun/ui/GUIDistance.cpp
| | | | M	src/shogun/ui/GUIFeatures.cpp
| | | | M	src/shogun/ui/GUIHMM.cpp
| | | | M	src/shogun/ui/GUIKernel.cpp
| | | | M	src/shogun/ui/GUILabels.cpp
| | | | M	src/shogun/ui/GUIMath.cpp
| | | | M	src/shogun/ui/GUIPluginEstimate.cpp
| | | | M	src/shogun/ui/GUIPreprocessor.cpp
| | | | M	src/shogun/ui/GUIStructure.cpp
| | | | M	src/shogun/ui/GUITime.cpp
| | | | M	src/shogun/ui/SGInterface.cpp
| | | | M	src/shogun/ui/SGInterface.h
| | | |     
* | | | commit 7719b1c7dd0d686aa22a7a0d260e7deaa71683fa
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Mon Jul 18 15:38:13 2011 +0200
| | |   
| | |       make ppwm example a bit more meaningful
| | |   
| | |   M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | |    
* | | commit ebf230ae6c15318ecc6d004888a863b0cb345621
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 10:35:00 2011 +0200
| | | 
| | |     update documentation to new layout (libshogun never needs to be
| | |     specified on ./configure --interfaces=xxx from now on)
| | | 
| | | M	src/INSTALL
| | | M	src/README.developer
| | | M	src/configure
| | |    
* | | commit 118155e82bbb9710446bf048a1eaff65e3b576f2
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 10:10:39 2011 +0200
| | | 
| | |     fix configure to not generate a.out cruft
| | | 
| | | M	src/configure
| | |    
* | | commit 5dbeb215377eb085ba44d6d951595a7025453423
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 09:49:48 2011 +0200
| | | 
| | |     move modular into interfaces/
| | | 
| | | M	src/Makefile.template
| | | A	src/interfaces/modular/Classifier.doxy
| | | A	src/interfaces/modular/Classifier.i
| | | A	src/interfaces/modular/Classifier_includes.i
| | | A	src/interfaces/modular/Clustering.doxy
| | | A	src/interfaces/modular/Clustering.i
| | | A	src/interfaces/modular/Clustering_includes.i
| | | A	src/interfaces/modular/Distance.doxy
| | | A	src/interfaces/modular/Distance.i
| | | A	src/interfaces/modular/Distance_includes.i
| | | A	src/interfaces/modular/Distribution.doxy
| | | A	src/interfaces/modular/Distribution.i
| | | A	src/interfaces/modular/Distribution_includes.i
| | | A	src/interfaces/modular/Evaluation.doxy
| | | A	src/interfaces/modular/Evaluation.i
| | | A	src/interfaces/modular/Evaluation_includes.i
| | | A	src/interfaces/modular/Features.doxy
| | | A	src/interfaces/modular/Features.i
| | | A	src/interfaces/modular/Features_includes.i
| | | A	src/interfaces/modular/Kernel.doxy
| | | A	src/interfaces/modular/Kernel.i
| | | A	src/interfaces/modular/Kernel_includes.i
| | | A	src/interfaces/modular/Library.doxy
| | | A	src/interfaces/modular/Library.i
| | | A	src/interfaces/modular/Library_includes.i
| | | A	src/interfaces/modular/Modelselection.doxy
| | | A	src/interfaces/modular/Modelselection.i
| | | A	src/interfaces/modular/Modelselection_includes.i
| | | A	src/interfaces/modular/Preprocessor.doxy
| | | A	src/interfaces/modular/Preprocessor.i
| | | A	src/interfaces/modular/Preprocessor_includes.i
| | | A	src/interfaces/modular/Regression.doxy
| | | A	src/interfaces/modular/Regression.i
| | | A	src/interfaces/modular/Regression_includes.i
| | | A	src/interfaces/modular/SGBase.i
| | | A	src/interfaces/modular/Structure.doxy
| | | A	src/interfaces/modular/Structure.i
| | | A	src/interfaces/modular/Structure_includes.i
| | | D	src/modular/Classifier.doxy
| | | D	src/modular/Classifier.i
| | | D	src/modular/Classifier_includes.i
| | | D	src/modular/Clustering.doxy
| | | D	src/modular/Clustering.i
| | | D	src/modular/Clustering_includes.i
| | | D	src/modular/Distance.doxy
| | | D	src/modular/Distance.i
| | | D	src/modular/Distance_includes.i
| | | D	src/modular/Distribution.doxy
| | | D	src/modular/Distribution.i
| | | D	src/modular/Distribution_includes.i
| | | D	src/modular/Evaluation.doxy
| | | D	src/modular/Evaluation.i
| | | D	src/modular/Evaluation_includes.i
| | | D	src/modular/Features.doxy
| | | D	src/modular/Features.i
| | | D	src/modular/Features_includes.i
| | | D	src/modular/Kernel.doxy
| | | D	src/modular/Kernel.i
| | | D	src/modular/Kernel_includes.i
| | | D	src/modular/Library.doxy
| | | D	src/modular/Library.i
| | | D	src/modular/Library_includes.i
| | | D	src/modular/Modelselection.doxy
| | | D	src/modular/Modelselection.i
| | | D	src/modular/Modelselection_includes.i
| | | D	src/modular/Preprocessor.doxy
| | | D	src/modular/Preprocessor.i
| | | D	src/modular/Preprocessor_includes.i
| | | D	src/modular/Regression.doxy
| | | D	src/modular/Regression.i
| | | D	src/modular/Regression_includes.i
| | | D	src/modular/SGBase.i
| | | D	src/modular/Structure.doxy
| | | D	src/modular/Structure.i
| | | D	src/modular/Structure_includes.i
| | |    
* | | commit 300df4a5dabc5059edb0f40cde570877c5f9b517
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 09:37:18 2011 +0200
| | | 
| | |     fix a number of path issues caused by interface transition
| | | 
| | | M	examples/Makefile
| | | M	examples/generate_documented.sh
| | | M	examples/undocumented/java_modular/check.sh
| | | M	src/Makefile.template
| | | M	src/NEWS
| | | M	src/configure
| | |    
* | | commit 61a56fcc8bb7a69470c4e15a9206b14927e38c9e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 18 08:58:44 2011 +0200
| | | 
| | |     generated shogun/Makefile depends on Makefile.template
| | | 
| | | M	src/Makefile
| | |      
* | |   commit 9c679cc8cb7eff120d707d1936856c8915a9a494
|\ \ \  Merge: ff7b19d 2283c65
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sun Jul 17 23:56:52 2011 -0700
| | |   
| | |       Merge pull request #207 from frx/python_stream_bad
| | |       
| | |       StreamingFeatures modular interfaces
| | |    
| * | commit 2283c65edf14c46d0d418030ca20f3c7b03aa218
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 10:15:15 2011 +0530
| | | 
| | |     minor makefile change to compile.
| | | 
| | | M	src/Makefile
| | |    
| * | commit 02dc299ba7e78a185c41658a0b88c1f790784b3d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 08:26:43 2011 +0530
| | | 
| | |     python_modular seems to compile now, with the streaming changes.
| | | 
| | | M	src/modular/Library.i
| | |    
| * | commit 39605f05106c9b5a0f12b67d5970ce448f7faa56
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 07:34:44 2011 +0530
| | | 
| | |     Updated .i files to the latest upstream version.
| | |     Included streaming* into Features.i, Library.i and Classifier.i
| | | 
| | | M	src/modular/Classifier.i
| | | M	src/modular/Clustering.i
| | | M	src/modular/Distance.i
| | | M	src/modular/Distribution.i
| | | M	src/modular/Evaluation.i
| | | M	src/modular/Features.i
| | | M	src/modular/Features_includes.i
| | | M	src/modular/Library.i
| | | M	src/modular/Library_includes.i
| | | M	src/modular/Regression.i
| | | M	src/modular/Structure.i
| | |    
| * | commit 0fd04b62a6229ae5565291a5d8dd5fb8e2ec128d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 01:56:57 2011 +0530
| | | 
| | |     Unintended change in Preprocessor.i reverted.
| | | 
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
| * | commit 4c15f676682bcf7e7771d0eb18d6eaee69833a29
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 18 01:40:38 2011 +0530
| | | 
| | |     Modified swig interfaces for streaming* to include everything in exisiting .i files.
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/modular/Classifier.i
| | | M	src/modular/Clustering.i
| | | M	src/modular/Distance.i
| | | M	src/modular/Distribution.i
| | | M	src/modular/Evaluation.i
| | | M	src/modular/Features.i
| | | M	src/modular/Features_includes.i
| | | M	src/modular/Library.i
| | | M	src/modular/Library_includes.i
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | | M	src/modular/Regression.i
| | | D	src/modular/Streaming.i
| | | D	src/modular/Streaming_includes.i
| | | M	src/modular/Structure.i
| | |    
| * | commit ecfaff6c3df00ef41c1e6a218ef242a7f9ecdf74
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 04:46:13 2011 +0530
| | | 
| | |     Typo found.
| | | 
| | | M	src/.generate_link_dependencies.py
| | |    
| * | commit e9567b242a5c1b18d971bc396377c39d037d1ab8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 03:00:35 2011 +0530
| | | 
| | |     Changed order of includes in streaming interface file, moved inline definition in StreamingAsciiFile to the .h file
| | | 
| | | M	src/modular/Streaming.i
| | | M	src/shogun/lib/StreamingAsciiFile.cpp
| | | M	src/shogun/lib/StreamingAsciiFile.h
| | |    
| * | commit 8cee47d08768bc31f84067997a7e8009f43d29ee
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 02:52:46 2011 +0530
| | | 
| | |     Improved swig interface files for streaming features. Added dependency for Streaming.i
| | | 
| | | M	src/.generate_link_dependencies.py
| | | M	src/modular/Classifier.i
| | | M	src/modular/Classifier_includes.i
| | | M	src/modular/Regression.i
| | | M	src/modular/Streaming.i
| | | M	src/modular/Streaming_includes.i
| | | M	src/shogun/lib/InputParser.h
| | | M	src/shogun/lib/StreamingFile.h
| | |    
| * | commit 0103e9c48c6c9d282c3e93c196039f20ff845c2a
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 15 21:36:29 2011 +0530
| | | 
| | |     Basic StreamingFeatures swig interface files.
| | | 
| | | A	src/modular/Streaming.i
| | | A	src/modular/Streaming_includes.i
| | |    
* | | commit ff7b19d833b88b3e14b88b198c30b43d39e21f82
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 18 08:52:59 2011 +0200
| |   
| |       don't try to tail configure.log if file doesn't exist
| |   
| |   M	src/configure
| |   
* | commit ccc1ef335c4184694b8fefea179bee7907dc922c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 18 02:58:13 2011 +0200
| | 
| |     fix errors after occurring with doxygen etc caused by the interfaces/
| |     move
| | 
| | M	src/.r-install.sh
| | M	src/Makefile.template
| | M	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | M	src/modular/Classifier.doxy
| | M	src/modular/Clustering.doxy
| | M	src/modular/Distance.doxy
| | M	src/modular/Distribution.doxy
| | M	src/modular/Evaluation.doxy
| | M	src/modular/Features.doxy
| | M	src/modular/Kernel.doxy
| | M	src/modular/Library.doxy
| | M	src/modular/Modelselection.doxy
| | M	src/modular/Preprocessor.doxy
| | M	src/modular/Regression.doxy
| | M	src/modular/Structure.doxy
| | M	src/shogun/lib/AsciiFile.h
| |   
* | commit b01925e6f434d4f08e50ac69b91f5391dd38ea14
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 18 02:08:47 2011 +0200
| | 
| |     Restructure repository, such that
| |     
| |     - libshogun and libshogunui are merged and in shogun subdir
| |     - all interfaces are found in src/interfaces/<interface>
| |     - static interfaces have a _static suffix
| | 
| | M	.gitignore
| | D	examples/undocumented/cmdline/check.sh
| | D	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| | D	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| | D	examples/undocumented/cmdline/classifier_knn.sg
| | D	examples/undocumented/cmdline/classifier_lda.sg
| | D	examples/undocumented/cmdline/classifier_liblinear.sg
| | D	examples/undocumented/cmdline/classifier_libsvm.sg
| | D	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| | D	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| | D	examples/undocumented/cmdline/classifier_mpdsvm.sg
| | D	examples/undocumented/cmdline/classifier_perceptron.sg
| | D	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| | D	examples/undocumented/cmdline/classifier_svmlight.sg
| | D	examples/undocumented/cmdline/classifier_svmlin.sg
| | D	examples/undocumented/cmdline/classifier_svmocas.sg
| | D	examples/undocumented/cmdline/classifier_svmsgd.sg
| | D	examples/undocumented/cmdline/clustering_hierarchical.sg
| | D	examples/undocumented/cmdline/clustering_kmeans.sg
| | D	examples/undocumented/cmdline/distance_braycurtis.sg
| | D	examples/undocumented/cmdline/distance_canberra.sg
| | D	examples/undocumented/cmdline/distance_canberraword.sg
| | D	examples/undocumented/cmdline/distance_chebyshew.sg
| | D	examples/undocumented/cmdline/distance_chisquare.sg
| | D	examples/undocumented/cmdline/distance_cosine.sg
| | D	examples/undocumented/cmdline/distance_euclidean.sg
| | D	examples/undocumented/cmdline/distance_geodesic.sg
| | D	examples/undocumented/cmdline/distance_hammingword.sg
| | D	examples/undocumented/cmdline/distance_jensen.sg
| | D	examples/undocumented/cmdline/distance_manhatten.sg
| | D	examples/undocumented/cmdline/distance_manhattenword.sg
| | D	examples/undocumented/cmdline/distance_minkowski.sg
| | D	examples/undocumented/cmdline/distance_tanimoto.sg
| | D	examples/undocumented/cmdline/distribution_histogram.sg
| | D	examples/undocumented/cmdline/distribution_hmm.sg
| | D	examples/undocumented/cmdline/distribution_linearhmm.sg
| | D	examples/undocumented/cmdline/kernel_chi2.sg
| | D	examples/undocumented/cmdline/kernel_combined.sg
| | D	examples/undocumented/cmdline/kernel_commulongstring.sg
| | D	examples/undocumented/cmdline/kernel_commwordstring.sg
| | D	examples/undocumented/cmdline/kernel_const.sg
| | D	examples/undocumented/cmdline/kernel_diag.sg
| | D	examples/undocumented/cmdline/kernel_distance.sg
| | D	examples/undocumented/cmdline/kernel_fixeddegreestring.sg
| | D	examples/undocumented/cmdline/kernel_gaussian.sg
| | D	examples/undocumented/cmdline/kernel_gaussianshift.sg
| | D	examples/undocumented/cmdline/kernel_linear.sg
| | D	examples/undocumented/cmdline/kernel_linearbyte.sg
| | D	examples/undocumented/cmdline/kernel_linearstring.sg
| | D	examples/undocumented/cmdline/kernel_linearword.sg
| | D	examples/undocumented/cmdline/kernel_localalignmentstring.sg
| | D	examples/undocumented/cmdline/kernel_localityimprovedstring.sg
| | D	examples/undocumented/cmdline/kernel_oligostring.sg
| | D	examples/undocumented/cmdline/kernel_poly.sg
| | D	examples/undocumented/cmdline/kernel_polymatchstring.sg
| | D	examples/undocumented/cmdline/kernel_polymatchword.sg
| | D	examples/undocumented/cmdline/kernel_sigmoid.sg
| | D	examples/undocumented/cmdline/kernel_simplelocalityimprovedstring.sg
| | D	examples/undocumented/cmdline/kernel_sparsegaussian.sg
| | D	examples/undocumented/cmdline/kernel_sparselinear.sg
| | D	examples/undocumented/cmdline/kernel_sparsepoly.sg
| | D	examples/undocumented/cmdline/kernel_top.sg
| | D	examples/undocumented/cmdline/kernel_weightedcommwordstring.sg
| | D	examples/undocumented/cmdline/kernel_weighteddegreepositionstring.sg
| | D	examples/undocumented/cmdline/kernel_weighteddegreestring.sg
| | D	examples/undocumented/cmdline/mkl_multiclass.sg
| | D	examples/undocumented/cmdline/preproc_logplusone.sg
| | D	examples/undocumented/cmdline/preproc_normone.sg
| | D	examples/undocumented/cmdline/preproc_prunevarsubmean.sg
| | D	examples/undocumented/cmdline/preproc_sortulongstring.sg
| | D	examples/undocumented/cmdline/preproc_sortwordstring.sg
| | D	examples/undocumented/cmdline/regression_krr.sg
| | D	examples/undocumented/cmdline/regression_libsvr.sg
| | D	examples/undocumented/cmdline/regression_svrlight.sg
| | A	examples/undocumented/cmdline_static/check.sh
| | A	examples/undocumented/cmdline_static/classifier_gmnpsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_gpbtsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_knn.sg
| | A	examples/undocumented/cmdline_static/classifier_lda.sg
| | A	examples/undocumented/cmdline_static/classifier_liblinear.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvmmulticlass.sg
| | A	examples/undocumented/cmdline_static/classifier_libsvmoneclass.sg
| | A	examples/undocumented/cmdline_static/classifier_mpdsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_perceptron.sg
| | A	examples/undocumented/cmdline_static/classifier_subgradientsvm.sg
| | A	examples/undocumented/cmdline_static/classifier_svmlight.sg
| | A	examples/undocumented/cmdline_static/classifier_svmlin.sg
| | A	examples/undocumented/cmdline_static/classifier_svmocas.sg
| | A	examples/undocumented/cmdline_static/classifier_svmsgd.sg
| | A	examples/undocumented/cmdline_static/clustering_hierarchical.sg
| | A	examples/undocumented/cmdline_static/clustering_kmeans.sg
| | A	examples/undocumented/cmdline_static/distance_braycurtis.sg
| | A	examples/undocumented/cmdline_static/distance_canberra.sg
| | A	examples/undocumented/cmdline_static/distance_canberraword.sg
| | A	examples/undocumented/cmdline_static/distance_chebyshew.sg
| | A	examples/undocumented/cmdline_static/distance_chisquare.sg
| | A	examples/undocumented/cmdline_static/distance_cosine.sg
| | A	examples/undocumented/cmdline_static/distance_euclidean.sg
| | A	examples/undocumented/cmdline_static/distance_geodesic.sg
| | A	examples/undocumented/cmdline_static/distance_hammingword.sg
| | A	examples/undocumented/cmdline_static/distance_jensen.sg
| | A	examples/undocumented/cmdline_static/distance_manhatten.sg
| | A	examples/undocumented/cmdline_static/distance_manhattenword.sg
| | A	examples/undocumented/cmdline_static/distance_minkowski.sg
| | A	examples/undocumented/cmdline_static/distance_tanimoto.sg
| | A	examples/undocumented/cmdline_static/distribution_histogram.sg
| | A	examples/undocumented/cmdline_static/distribution_hmm.sg
| | A	examples/undocumented/cmdline_static/distribution_linearhmm.sg
| | A	examples/undocumented/cmdline_static/kernel_chi2.sg
| | A	examples/undocumented/cmdline_static/kernel_combined.sg
| | A	examples/undocumented/cmdline_static/kernel_commulongstring.sg
| | A	examples/undocumented/cmdline_static/kernel_commwordstring.sg
| | A	examples/undocumented/cmdline_static/kernel_const.sg
| | A	examples/undocumented/cmdline_static/kernel_diag.sg
| | A	examples/undocumented/cmdline_static/kernel_distance.sg
| | A	examples/undocumented/cmdline_static/kernel_fixeddegreestring.sg
| | A	examples/undocumented/cmdline_static/kernel_gaussian.sg
| | A	examples/undocumented/cmdline_static/kernel_gaussianshift.sg
| | A	examples/undocumented/cmdline_static/kernel_linear.sg
| | A	examples/undocumented/cmdline_static/kernel_linearbyte.sg
| | A	examples/undocumented/cmdline_static/kernel_linearstring.sg
| | A	examples/undocumented/cmdline_static/kernel_linearword.sg
| | A	examples/undocumented/cmdline_static/kernel_localalignmentstring.sg
| | A	examples/undocumented/cmdline_static/kernel_localityimprovedstring.sg
| | A	examples/undocumented/cmdline_static/kernel_oligostring.sg
| | A	examples/undocumented/cmdline_static/kernel_poly.sg
| | A	examples/undocumented/cmdline_static/kernel_polymatchstring.sg
| | A	examples/undocumented/cmdline_static/kernel_polymatchword.sg
| | A	examples/undocumented/cmdline_static/kernel_sigmoid.sg
| | A	examples/undocumented/cmdline_static/kernel_simplelocalityimprovedstring.sg
| | A	examples/undocumented/cmdline_static/kernel_sparsegaussian.sg
| | A	examples/undocumented/cmdline_static/kernel_sparselinear.sg
| | A	examples/undocumented/cmdline_static/kernel_sparsepoly.sg
| | A	examples/undocumented/cmdline_static/kernel_top.sg
| | A	examples/undocumented/cmdline_static/kernel_weightedcommwordstring.sg
| | A	examples/undocumented/cmdline_static/kernel_weighteddegreepositionstring.sg
| | A	examples/undocumented/cmdline_static/kernel_weighteddegreestring.sg
| | A	examples/undocumented/cmdline_static/mkl_multiclass.sg
| | A	examples/undocumented/cmdline_static/preproc_logplusone.sg
| | A	examples/undocumented/cmdline_static/preproc_normone.sg
| | A	examples/undocumented/cmdline_static/preproc_prunevarsubmean.sg
| | A	examples/undocumented/cmdline_static/preproc_sortulongstring.sg
| | A	examples/undocumented/cmdline_static/preproc_sortwordstring.sg
| | A	examples/undocumented/cmdline_static/regression_krr.sg
| | A	examples/undocumented/cmdline_static/regression_libsvr.sg
| | A	examples/undocumented/cmdline_static/regression_svrlight.sg
| | D	examples/undocumented/elwms/foo.R
| | D	examples/undocumented/elwms/octave_matplotlib.m
| | D	examples/undocumented/elwms/octave_to_python.m
| | D	examples/undocumented/elwms/octave_to_r.m
| | D	examples/undocumented/elwms/python_to_octave.py
| | D	examples/undocumented/elwms/r_to_octave.m
| | D	examples/undocumented/elwms/r_to_python.R
| | A	examples/undocumented/elwms_static/foo.R
| | A	examples/undocumented/elwms_static/octave_matplotlib.m
| | A	examples/undocumented/elwms_static/octave_to_python.m
| | A	examples/undocumented/elwms_static/octave_to_r.m
| | A	examples/undocumented/elwms_static/python_to_octave.py
| | A	examples/undocumented/elwms_static/r_to_octave.m
| | A	examples/undocumented/elwms_static/r_to_python.R
| | D	examples/undocumented/matlab
| | A	examples/undocumented/matlab_static
| | D	examples/undocumented/octave
| | A	examples/undocumented/octave_static
| | D	examples/undocumented/python/check.sh
| | D	examples/undocumented/python/classifier_gmnpsvm.py
| | D	examples/undocumented/python/classifier_gpbtsvm.py
| | D	examples/undocumented/python/classifier_knn.py
| | D	examples/undocumented/python/classifier_lda.py
| | D	examples/undocumented/python/classifier_libsvm.py
| | D	examples/undocumented/python/classifier_libsvmmulticlass.py
| | D	examples/undocumented/python/classifier_libsvmoneclass.py
| | D	examples/undocumented/python/classifier_mpdsvm.py
| | D	examples/undocumented/python/classifier_perceptron.py
| | D	examples/undocumented/python/classifier_svmlight.py
| | D	examples/undocumented/python/clustering_hierarchical.py
| | D	examples/undocumented/python/clustering_kmeans.py
| | D	examples/undocumented/python/distance_braycurtis.py
| | D	examples/undocumented/python/distance_canberra.py
| | D	examples/undocumented/python/distance_canberraword.py
| | D	examples/undocumented/python/distance_chebyshew.py
| | D	examples/undocumented/python/distance_chisquare.py
| | D	examples/undocumented/python/distance_cosine.py
| | D	examples/undocumented/python/distance_euclidian.py
| | D	examples/undocumented/python/distance_geodesic.py
| | D	examples/undocumented/python/distance_hammingword.py
| | D	examples/undocumented/python/distance_jensen.py
| | D	examples/undocumented/python/distance_manhatten.py
| | D	examples/undocumented/python/distance_manhattenword.py
| | D	examples/undocumented/python/distance_minkowski.py
| | D	examples/undocumented/python/distance_tanimoto.py
| | D	examples/undocumented/python/distribution_histogram.py
| | D	examples/undocumented/python/distribution_hmm.py
| | D	examples/undocumented/python/distribution_linearhmm.py
| | D	examples/undocumented/python/graphical/svm_classification.py
| | D	examples/undocumented/python/graphical/svr_regression.py
| | D	examples/undocumented/python/graphical/util.py
| | D	examples/undocumented/python/kernel_chi2.py
| | D	examples/undocumented/python/kernel_combined.py
| | D	examples/undocumented/python/kernel_commulongstring.py
| | D	examples/undocumented/python/kernel_commwordstring.py
| | D	examples/undocumented/python/kernel_const.py
| | D	examples/undocumented/python/kernel_diag.py
| | D	examples/undocumented/python/kernel_fixeddegreestring.py
| | D	examples/undocumented/python/kernel_gaussian.py
| | D	examples/undocumented/python/kernel_gaussianshift.py
| | D	examples/undocumented/python/kernel_linear.py
| | D	examples/undocumented/python/kernel_linearbyte.py
| | D	examples/undocumented/python/kernel_linearstring.py
| | D	examples/undocumented/python/kernel_linearword.py
| | D	examples/undocumented/python/kernel_localalignmentstring.py
| | D	examples/undocumented/python/kernel_localityimprovedstring.py
| | D	examples/undocumented/python/kernel_oligostring.py
| | D	examples/undocumented/python/kernel_pluginestimatehistogram.py
| | D	examples/undocumented/python/kernel_poly.py
| | D	examples/undocumented/python/kernel_polymatchstring.py
| | D	examples/undocumented/python/kernel_polymatchword.py
| | D	examples/undocumented/python/kernel_salzbergstring.py
| | D	examples/undocumented/python/kernel_sigmoid.py
| | D	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| | D	examples/undocumented/python/kernel_weightedcommwordstring.py
| | D	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| | D	examples/undocumented/python/kernel_weighteddegreestring.py
| | D	examples/undocumented/python/mkl_multiclass.py
| | D	examples/undocumented/python/mkl_regression.py
| | D	examples/undocumented/python/mkl_twoclass.py
| | D	examples/undocumented/python/preproc_logplusone.py
| | D	examples/undocumented/python/preproc_normone.py
| | D	examples/undocumented/python/preproc_prunevarsubmean.py
| | D	examples/undocumented/python/preproc_sortulongstring.py
| | D	examples/undocumented/python/preproc_sortwordstring.py
| | D	examples/undocumented/python/regression_krr.py
| | D	examples/undocumented/python/regression_libsvr.py
| | D	examples/undocumented/python/regression_svrlight.py
| | D	examples/undocumented/python/tools/__init__.py
| | D	examples/undocumented/python/tools/load.py
| | A	examples/undocumented/python_static/check.sh
| | A	examples/undocumented/python_static/classifier_gmnpsvm.py
| | A	examples/undocumented/python_static/classifier_gpbtsvm.py
| | A	examples/undocumented/python_static/classifier_knn.py
| | A	examples/undocumented/python_static/classifier_lda.py
| | A	examples/undocumented/python_static/classifier_libsvm.py
| | A	examples/undocumented/python_static/classifier_libsvmmulticlass.py
| | A	examples/undocumented/python_static/classifier_libsvmoneclass.py
| | A	examples/undocumented/python_static/classifier_mpdsvm.py
| | A	examples/undocumented/python_static/classifier_perceptron.py
| | A	examples/undocumented/python_static/classifier_svmlight.py
| | A	examples/undocumented/python_static/clustering_hierarchical.py
| | A	examples/undocumented/python_static/clustering_kmeans.py
| | A	examples/undocumented/python_static/distance_braycurtis.py
| | A	examples/undocumented/python_static/distance_canberra.py
| | A	examples/undocumented/python_static/distance_canberraword.py
| | A	examples/undocumented/python_static/distance_chebyshew.py
| | A	examples/undocumented/python_static/distance_chisquare.py
| | A	examples/undocumented/python_static/distance_cosine.py
| | A	examples/undocumented/python_static/distance_euclidian.py
| | A	examples/undocumented/python_static/distance_geodesic.py
| | A	examples/undocumented/python_static/distance_hammingword.py
| | A	examples/undocumented/python_static/distance_jensen.py
| | A	examples/undocumented/python_static/distance_manhatten.py
| | A	examples/undocumented/python_static/distance_manhattenword.py
| | A	examples/undocumented/python_static/distance_minkowski.py
| | A	examples/undocumented/python_static/distance_tanimoto.py
| | A	examples/undocumented/python_static/distribution_histogram.py
| | A	examples/undocumented/python_static/distribution_hmm.py
| | A	examples/undocumented/python_static/distribution_linearhmm.py
| | A	examples/undocumented/python_static/graphical/svm_classification.py
| | A	examples/undocumented/python_static/graphical/svr_regression.py
| | A	examples/undocumented/python_static/graphical/util.py
| | A	examples/undocumented/python_static/kernel_chi2.py
| | A	examples/undocumented/python_static/kernel_combined.py
| | A	examples/undocumented/python_static/kernel_commulongstring.py
| | A	examples/undocumented/python_static/kernel_commwordstring.py
| | A	examples/undocumented/python_static/kernel_const.py
| | A	examples/undocumented/python_static/kernel_diag.py
| | A	examples/undocumented/python_static/kernel_fixeddegreestring.py
| | A	examples/undocumented/python_static/kernel_gaussian.py
| | A	examples/undocumented/python_static/kernel_gaussianshift.py
| | A	examples/undocumented/python_static/kernel_linear.py
| | A	examples/undocumented/python_static/kernel_linearbyte.py
| | A	examples/undocumented/python_static/kernel_linearstring.py
| | A	examples/undocumented/python_static/kernel_linearword.py
| | A	examples/undocumented/python_static/kernel_localalignmentstring.py
| | A	examples/undocumented/python_static/kernel_localityimprovedstring.py
| | A	examples/undocumented/python_static/kernel_oligostring.py
| | A	examples/undocumented/python_static/kernel_pluginestimatehistogram.py
| | A	examples/undocumented/python_static/kernel_poly.py
| | A	examples/undocumented/python_static/kernel_polymatchstring.py
| | A	examples/undocumented/python_static/kernel_polymatchword.py
| | A	examples/undocumented/python_static/kernel_salzbergstring.py
| | A	examples/undocumented/python_static/kernel_sigmoid.py
| | A	examples/undocumented/python_static/kernel_simplelocalityimprovedstring.py
| | A	examples/undocumented/python_static/kernel_weightedcommwordstring.py
| | A	examples/undocumented/python_static/kernel_weighteddegreepositionstring.py
| | A	examples/undocumented/python_static/kernel_weighteddegreestring.py
| | A	examples/undocumented/python_static/mkl_multiclass.py
| | A	examples/undocumented/python_static/mkl_regression.py
| | A	examples/undocumented/python_static/mkl_twoclass.py
| | A	examples/undocumented/python_static/preproc_logplusone.py
| | A	examples/undocumented/python_static/preproc_normone.py
| | A	examples/undocumented/python_static/preproc_prunevarsubmean.py
| | A	examples/undocumented/python_static/preproc_sortulongstring.py
| | A	examples/undocumented/python_static/preproc_sortwordstring.py
| | A	examples/undocumented/python_static/regression_krr.py
| | A	examples/undocumented/python_static/regression_libsvr.py
| | A	examples/undocumented/python_static/regression_svrlight.py
| | A	examples/undocumented/python_static/tools/__init__.py
| | A	examples/undocumented/python_static/tools/load.py
| | D	examples/undocumented/r/check.sh
| | D	examples/undocumented/r/classifier_gmnpsvm.R
| | D	examples/undocumented/r/classifier_gpbtsvm.R
| | D	examples/undocumented/r/classifier_knn.R
| | D	examples/undocumented/r/classifier_lda.R
| | D	examples/undocumented/r/classifier_libsvm.R
| | D	examples/undocumented/r/classifier_libsvmmulticlass.R
| | D	examples/undocumented/r/classifier_libsvmoneclass.R
| | D	examples/undocumented/r/classifier_mpdsvm.R
| | D	examples/undocumented/r/classifier_perceptron.R
| | D	examples/undocumented/r/classifier_svmlight.R
| | D	examples/undocumented/r/clustering_hierarchical.R
| | D	examples/undocumented/r/clustering_kmeans.R
| | D	examples/undocumented/r/distance_braycurtis.R
| | D	examples/undocumented/r/distance_canberra.R
| | D	examples/undocumented/r/distance_canberraword.R
| | D	examples/undocumented/r/distance_chebyshew.R
| | D	examples/undocumented/r/distance_chisquare.R
| | D	examples/undocumented/r/distance_cosine.R
| | D	examples/undocumented/r/distance_euclidian.R
| | D	examples/undocumented/r/distance_geodesic.R
| | D	examples/undocumented/r/distance_hammingword.R
| | D	examples/undocumented/r/distance_jensen.R
| | D	examples/undocumented/r/distance_manhatten.R
| | D	examples/undocumented/r/distance_manhattenword.R
| | D	examples/undocumented/r/distance_minkowski.R
| | D	examples/undocumented/r/distance_tanimoto.R
| | D	examples/undocumented/r/distribution_histogram.R
| | D	examples/undocumented/r/distribution_hmm.R
| | D	examples/undocumented/r/distribution_linearhmm.R
| | D	examples/undocumented/r/graphical/hmm.R
| | D	examples/undocumented/r/graphical/svm_classification.R
| | D	examples/undocumented/r/graphical/svr_regression.R
| | D	examples/undocumented/r/kernel_chi2.R
| | D	examples/undocumented/r/kernel_combined.R
| | D	examples/undocumented/r/kernel_commulongstring.R
| | D	examples/undocumented/r/kernel_commwordstring.R
| | D	examples/undocumented/r/kernel_const.R
| | D	examples/undocumented/r/kernel_diag.R
| | D	examples/undocumented/r/kernel_distance.R
| | D	examples/undocumented/r/kernel_fixeddegreestring.R
| | D	examples/undocumented/r/kernel_gaussian.R
| | D	examples/undocumented/r/kernel_gaussianshift.R
| | D	examples/undocumented/r/kernel_histogramword.R
| | D	examples/undocumented/r/kernel_linear.R
| | D	examples/undocumented/r/kernel_linearstring.R
| | D	examples/undocumented/r/kernel_localalignmentstring.R
| | D	examples/undocumented/r/kernel_localityimprovedstring.R
| | D	examples/undocumented/r/kernel_oligostring.R
| | D	examples/undocumented/r/kernel_poly.R
| | D	examples/undocumented/r/kernel_polymatchstring.R
| | D	examples/undocumented/r/kernel_sigmoid.R
| | D	examples/undocumented/r/kernel_simplelocalityimprovedstring.R
| | D	examples/undocumented/r/kernel_spectrum.R
| | D	examples/undocumented/r/kernel_weightedcommwordstring.R
| | D	examples/undocumented/r/kernel_weighteddegreepositionstring.R
| | D	examples/undocumented/r/kernel_weighteddegreestring.R
| | D	examples/undocumented/r/mkl_classify_christmas_star.R
| | D	examples/undocumented/r/mkl_multiclass.R
| | D	examples/undocumented/r/mkl_regression_3sine_waves.R
| | D	examples/undocumented/r/mkl_regression_sine.R
| | D	examples/undocumented/r/mkl_wd.R
| | D	examples/undocumented/r/preproc_logplusone.R
| | D	examples/undocumented/r/preproc_normone.R
| | D	examples/undocumented/r/preproc_prunevarsubmean.R
| | D	examples/undocumented/r/preproc_sortulongstring.R
| | D	examples/undocumented/r/preproc_sortwordstring.R
| | D	examples/undocumented/r/regression_krr.R
| | D	examples/undocumented/r/regression_libsvr.R
| | D	examples/undocumented/r/regression_svrlight.R
| | A	examples/undocumented/r_static/check.sh
| | A	examples/undocumented/r_static/classifier_gmnpsvm.R
| | A	examples/undocumented/r_static/classifier_gpbtsvm.R
| | A	examples/undocumented/r_static/classifier_knn.R
| | A	examples/undocumented/r_static/classifier_lda.R
| | A	examples/undocumented/r_static/classifier_libsvm.R
| | A	examples/undocumented/r_static/classifier_libsvmmulticlass.R
| | A	examples/undocumented/r_static/classifier_libsvmoneclass.R
| | A	examples/undocumented/r_static/classifier_mpdsvm.R
| | A	examples/undocumented/r_static/classifier_perceptron.R
| | A	examples/undocumented/r_static/classifier_svmlight.R
| | A	examples/undocumented/r_static/clustering_hierarchical.R
| | A	examples/undocumented/r_static/clustering_kmeans.R
| | A	examples/undocumented/r_static/distance_braycurtis.R
| | A	examples/undocumented/r_static/distance_canberra.R
| | A	examples/undocumented/r_static/distance_canberraword.R
| | A	examples/undocumented/r_static/distance_chebyshew.R
| | A	examples/undocumented/r_static/distance_chisquare.R
| | A	examples/undocumented/r_static/distance_cosine.R
| | A	examples/undocumented/r_static/distance_euclidian.R
| | A	examples/undocumented/r_static/distance_geodesic.R
| | A	examples/undocumented/r_static/distance_hammingword.R
| | A	examples/undocumented/r_static/distance_jensen.R
| | A	examples/undocumented/r_static/distance_manhatten.R
| | A	examples/undocumented/r_static/distance_manhattenword.R
| | A	examples/undocumented/r_static/distance_minkowski.R
| | A	examples/undocumented/r_static/distance_tanimoto.R
| | A	examples/undocumented/r_static/distribution_histogram.R
| | A	examples/undocumented/r_static/distribution_hmm.R
| | A	examples/undocumented/r_static/distribution_linearhmm.R
| | A	examples/undocumented/r_static/graphical/hmm.R
| | A	examples/undocumented/r_static/graphical/svm_classification.R
| | A	examples/undocumented/r_static/graphical/svr_regression.R
| | A	examples/undocumented/r_static/kernel_chi2.R
| | A	examples/undocumented/r_static/kernel_combined.R
| | A	examples/undocumented/r_static/kernel_commulongstring.R
| | A	examples/undocumented/r_static/kernel_commwordstring.R
| | A	examples/undocumented/r_static/kernel_const.R
| | A	examples/undocumented/r_static/kernel_diag.R
| | A	examples/undocumented/r_static/kernel_distance.R
| | A	examples/undocumented/r_static/kernel_fixeddegreestring.R
| | A	examples/undocumented/r_static/kernel_gaussian.R
| | A	examples/undocumented/r_static/kernel_gaussianshift.R
| | A	examples/undocumented/r_static/kernel_histogramword.R
| | A	examples/undocumented/r_static/kernel_linear.R
| | A	examples/undocumented/r_static/kernel_linearstring.R
| | A	examples/undocumented/r_static/kernel_localalignmentstring.R
| | A	examples/undocumented/r_static/kernel_localityimprovedstring.R
| | A	examples/undocumented/r_static/kernel_oligostring.R
| | A	examples/undocumented/r_static/kernel_poly.R
| | A	examples/undocumented/r_static/kernel_polymatchstring.R
| | A	examples/undocumented/r_static/kernel_sigmoid.R
| | A	examples/undocumented/r_static/kernel_simplelocalityimprovedstring.R
| | A	examples/undocumented/r_static/kernel_spectrum.R
| | A	examples/undocumented/r_static/kernel_weightedcommwordstring.R
| | A	examples/undocumented/r_static/kernel_weighteddegreepositionstring.R
| | A	examples/undocumented/r_static/kernel_weighteddegreestring.R
| | A	examples/undocumented/r_static/mkl_classify_christmas_star.R
| | A	examples/undocumented/r_static/mkl_multiclass.R
| | A	examples/undocumented/r_static/mkl_regression_3sine_waves.R
| | A	examples/undocumented/r_static/mkl_regression_sine.R
| | A	examples/undocumented/r_static/mkl_wd.R
| | A	examples/undocumented/r_static/preproc_logplusone.R
| | A	examples/undocumented/r_static/preproc_normone.R
| | A	examples/undocumented/r_static/preproc_prunevarsubmean.R
| | A	examples/undocumented/r_static/preproc_sortulongstring.R
| | A	examples/undocumented/r_static/preproc_sortwordstring.R
| | A	examples/undocumented/r_static/regression_krr.R
| | A	examples/undocumented/r_static/regression_libsvr.R
| | A	examples/undocumented/r_static/regression_svrlight.R
| | M	src/.generate_link_dependencies.py
| | M	src/Makefile
| | M	src/Makefile.template
| | D	src/cmdline/CmdLineInterface.cpp
| | D	src/cmdline/CmdLineInterface.h
| | D	src/cmdline/cmdline.cpp
| | M	src/configure
| | D	src/csharp_modular/sg_print_functions.cpp
| | D	src/csharp_modular/swig_typemaps.i
| | D	src/elwms/elwms.cpp
| | A	src/interfaces/cmdline_static/CmdLineInterface.cpp
| | A	src/interfaces/cmdline_static/CmdLineInterface.h
| | A	src/interfaces/cmdline_static/cmdline.cpp
| | A	src/interfaces/csharp_modular/sg_print_functions.cpp
| | A	src/interfaces/csharp_modular/swig_typemaps.i
| | A	src/interfaces/elwms_static/elwms.cpp
| | A	src/interfaces/java_modular/build.xml
| | A	src/interfaces/java_modular/sg_print_functions.cpp
| | A	src/interfaces/java_modular/swig_typemaps.i
| | A	src/interfaces/lua_modular/sg_print_functions.cpp
| | A	src/interfaces/lua_modular/shogun.lua
| | A	src/interfaces/lua_modular/swig_typemaps.i
| | A	src/interfaces/matlab_static/MatlabInterface.cpp
| | A	src/interfaces/matlab_static/MatlabInterface.h
| | A	src/interfaces/octave_modular/sg_print_functions.cpp
| | A	src/interfaces/octave_modular/swig_typemaps.i
| | A	src/interfaces/octave_static/OctaveInterface.cpp
| | A	src/interfaces/octave_static/OctaveInterface.h
| | A	src/interfaces/python_modular/sg_print_functions.cpp
| | A	src/interfaces/python_modular/swig_typemaps.i
| | A	src/interfaces/python_static/PythonInterface.cpp
| | A	src/interfaces/python_static/PythonInterface.h
| | A	src/interfaces/r_modular/sg_print_functions.cpp
| | A	src/interfaces/r_modular/swig_typemaps.i
| | A	src/interfaces/r_static/RInterface.cpp
| | A	src/interfaces/r_static/RInterface.h
| | A	src/interfaces/ruby_modular/sg_print_functions.cpp
| | A	src/interfaces/ruby_modular/swig_typemaps.i
| | D	src/java_modular/build.xml
| | D	src/java_modular/sg_print_functions.cpp
| | D	src/java_modular/swig_typemaps.i
| | D	src/libshogun/base/DynArray.h
| | D	src/libshogun/base/Parallel.cpp
| | D	src/libshogun/base/Parallel.h
| | D	src/libshogun/base/Parameter.cpp
| | D	src/libshogun/base/Parameter.h
| | D	src/libshogun/base/SGObject.cpp
| | D	src/libshogun/base/SGObject.h
| | D	src/libshogun/base/Version.cpp
| | D	src/libshogun/base/Version.h
| | D	src/libshogun/base/class_list.cpp.py
| | D	src/libshogun/base/class_list.cpp.templ
| | D	src/libshogun/base/class_list.h
| | D	src/libshogun/base/init.cpp
| | D	src/libshogun/base/init.h
| | D	src/libshogun/classifier/AveragedPerceptron.cpp
| | D	src/libshogun/classifier/AveragedPerceptron.h
| | D	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | D	src/libshogun/classifier/GaussianNaiveBayes.h
| | D	src/libshogun/classifier/KNN.cpp
| | D	src/libshogun/classifier/KNN.h
| | D	src/libshogun/classifier/KernelPerceptron.cpp
| | D	src/libshogun/classifier/KernelPerceptron.h
| | D	src/libshogun/classifier/LDA.cpp
| | D	src/libshogun/classifier/LDA.h
| | D	src/libshogun/classifier/LPBoost.cpp
| | D	src/libshogun/classifier/LPBoost.h
| | D	src/libshogun/classifier/LPM.cpp
| | D	src/libshogun/classifier/LPM.h
| | D	src/libshogun/classifier/Perceptron.cpp
| | D	src/libshogun/classifier/Perceptron.h
| | D	src/libshogun/classifier/PluginEstimate.cpp
| | D	src/libshogun/classifier/PluginEstimate.h
| | D	src/libshogun/classifier/SubGradientLPM.cpp
| | D	src/libshogun/classifier/SubGradientLPM.h
| | D	src/libshogun/classifier/__init__.py
| | D	src/libshogun/classifier/mkl/MKL.cpp
| | D	src/libshogun/classifier/mkl/MKL.h
| | D	src/libshogun/classifier/mkl/MKLClassification.cpp
| | D	src/libshogun/classifier/mkl/MKLClassification.h
| | D	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClass.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassGradient.h
| | D	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | D	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | D	src/libshogun/classifier/mkl/MKLOneClass.cpp
| | D	src/libshogun/classifier/mkl/MKLOneClass.h
| | D	src/libshogun/classifier/svm/CPLEXSVM.cpp
| | D	src/libshogun/classifier/svm/CPLEXSVM.h
| | D	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | D	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | D	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | D	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | D	src/libshogun/classifier/svm/GMNPLib.cpp
| | D	src/libshogun/classifier/svm/GMNPLib.h
| | D	src/libshogun/classifier/svm/GMNPSVM.cpp
| | D	src/libshogun/classifier/svm/GMNPSVM.h
| | D	src/libshogun/classifier/svm/GNPPLib.cpp
| | D	src/libshogun/classifier/svm/GNPPLib.h
| | D	src/libshogun/classifier/svm/GNPPSVM.cpp
| | D	src/libshogun/classifier/svm/GNPPSVM.h
| | D	src/libshogun/classifier/svm/GPBTSVM.cpp
| | D	src/libshogun/classifier/svm/GPBTSVM.h
| | D	src/libshogun/classifier/svm/LaRank.cpp
| | D	src/libshogun/classifier/svm/LaRank.h
| | D	src/libshogun/classifier/svm/LibLinear.cpp
| | D	src/libshogun/classifier/svm/LibLinear.h
| | D	src/libshogun/classifier/svm/LibSVM.cpp
| | D	src/libshogun/classifier/svm/LibSVM.h
| | D	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | D	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| | D	src/libshogun/classifier/svm/LibSVMOneClass.h
| | D	src/libshogun/classifier/svm/MPDSVM.cpp
| | D	src/libshogun/classifier/svm/MPDSVM.h
| | D	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | D	src/libshogun/classifier/svm/MultiClassSVM.h
| | D	src/libshogun/classifier/svm/OnlineLibLinear.cpp
| | D	src/libshogun/classifier/svm/OnlineLibLinear.h
| | D	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | D	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | D	src/libshogun/classifier/svm/QPBSVMLib.cpp
| | D	src/libshogun/classifier/svm/QPBSVMLib.h
| | D	src/libshogun/classifier/svm/SGDQN.cpp
| | D	src/libshogun/classifier/svm/SGDQN.h
| | D	src/libshogun/classifier/svm/SVM.cpp
| | D	src/libshogun/classifier/svm/SVM.h
| | D	src/libshogun/classifier/svm/SVMLight.cpp
| | D	src/libshogun/classifier/svm/SVMLight.h
| | D	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| | D	src/libshogun/classifier/svm/SVMLightOneClass.h
| | D	src/libshogun/classifier/svm/SVMLin.cpp
| | D	src/libshogun/classifier/svm/SVMLin.h
| | D	src/libshogun/classifier/svm/SVMOcas.cpp
| | D	src/libshogun/classifier/svm/SVMOcas.h
| | D	src/libshogun/classifier/svm/SVMSGD.cpp
| | D	src/libshogun/classifier/svm/SVMSGD.h
| | D	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | D	src/libshogun/classifier/svm/SVM_libsvm.h
| | D	src/libshogun/classifier/svm/SVM_linear.cpp
| | D	src/libshogun/classifier/svm/SVM_linear.h
| | D	src/libshogun/classifier/svm/ScatterSVM.cpp
| | D	src/libshogun/classifier/svm/ScatterSVM.h
| | D	src/libshogun/classifier/svm/SubGradientSVM.cpp
| | D	src/libshogun/classifier/svm/SubGradientSVM.h
| | D	src/libshogun/classifier/svm/Tron.cpp
| | D	src/libshogun/classifier/svm/Tron.h
| | D	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | D	src/libshogun/classifier/svm/WDSVMOcas.h
| | D	src/libshogun/classifier/svm/__init__.py
| | D	src/libshogun/classifier/svm/gpdt.cpp
| | D	src/libshogun/classifier/svm/gpdt.h
| | D	src/libshogun/classifier/svm/gpdtsolve.cpp
| | D	src/libshogun/classifier/svm/gpdtsolve.h
| | D	src/libshogun/classifier/svm/gpm.cpp
| | D	src/libshogun/classifier/svm/gpm.h
| | D	src/libshogun/classifier/svm/libocas.cpp
| | D	src/libshogun/classifier/svm/libocas.h
| | D	src/libshogun/classifier/svm/libocas_common.h
| | D	src/libshogun/classifier/svm/libqp.h
| | D	src/libshogun/classifier/svm/libqp_splx.cpp
| | D	src/libshogun/classifier/svm/pr_loqo.cpp
| | D	src/libshogun/classifier/svm/pr_loqo.h
| | D	src/libshogun/classifier/svm/ssl.cpp
| | D	src/libshogun/classifier/svm/ssl.h
| | D	src/libshogun/clustering/GMM.cpp
| | D	src/libshogun/clustering/GMM.h
| | D	src/libshogun/clustering/Hierarchical.cpp
| | D	src/libshogun/clustering/Hierarchical.h
| | D	src/libshogun/clustering/KMeans.cpp
| | D	src/libshogun/clustering/KMeans.h
| | D	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | D	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | D	src/libshogun/distance/BrayCurtisDistance.cpp
| | D	src/libshogun/distance/BrayCurtisDistance.h
| | D	src/libshogun/distance/CanberraMetric.cpp
| | D	src/libshogun/distance/CanberraMetric.h
| | D	src/libshogun/distance/CanberraWordDistance.cpp
| | D	src/libshogun/distance/CanberraWordDistance.h
| | D	src/libshogun/distance/ChebyshewMetric.cpp
| | D	src/libshogun/distance/ChebyshewMetric.h
| | D	src/libshogun/distance/ChiSquareDistance.cpp
| | D	src/libshogun/distance/ChiSquareDistance.h
| | D	src/libshogun/distance/CosineDistance.cpp
| | D	src/libshogun/distance/CosineDistance.h
| | D	src/libshogun/distance/CustomDistance.cpp
| | D	src/libshogun/distance/CustomDistance.h
| | D	src/libshogun/distance/Distance.cpp
| | D	src/libshogun/distance/Distance.h
| | D	src/libshogun/distance/EuclidianDistance.cpp
| | D	src/libshogun/distance/EuclidianDistance.h
| | D	src/libshogun/distance/GeodesicMetric.cpp
| | D	src/libshogun/distance/GeodesicMetric.h
| | D	src/libshogun/distance/HammingWordDistance.cpp
| | D	src/libshogun/distance/HammingWordDistance.h
| | D	src/libshogun/distance/JensenMetric.cpp
| | D	src/libshogun/distance/JensenMetric.h
| | D	src/libshogun/distance/KernelDistance.cpp
| | D	src/libshogun/distance/KernelDistance.h
| | D	src/libshogun/distance/ManhattanMetric.cpp
| | D	src/libshogun/distance/ManhattanMetric.h
| | D	src/libshogun/distance/ManhattanWordDistance.cpp
| | D	src/libshogun/distance/ManhattanWordDistance.h
| | D	src/libshogun/distance/MinkowskiMetric.cpp
| | D	src/libshogun/distance/MinkowskiMetric.h
| | D	src/libshogun/distance/RealDistance.h
| | D	src/libshogun/distance/SimpleDistance.h
| | D	src/libshogun/distance/SparseDistance.h
| | D	src/libshogun/distance/SparseEuclidianDistance.cpp
| | D	src/libshogun/distance/SparseEuclidianDistance.h
| | D	src/libshogun/distance/StringDistance.h
| | D	src/libshogun/distance/TanimotoDistance.cpp
| | D	src/libshogun/distance/TanimotoDistance.h
| | D	src/libshogun/distributions/Distribution.cpp
| | D	src/libshogun/distributions/Distribution.h
| | D	src/libshogun/distributions/GHMM.cpp
| | D	src/libshogun/distributions/GHMM.h
| | D	src/libshogun/distributions/Gaussian.cpp
| | D	src/libshogun/distributions/Gaussian.h
| | D	src/libshogun/distributions/HMM.cpp
| | D	src/libshogun/distributions/HMM.h
| | D	src/libshogun/distributions/Histogram.cpp
| | D	src/libshogun/distributions/Histogram.h
| | D	src/libshogun/distributions/LinearHMM.cpp
| | D	src/libshogun/distributions/LinearHMM.h
| | D	src/libshogun/distributions/PositionalPWM.cpp
| | D	src/libshogun/distributions/PositionalPWM.h
| | D	src/libshogun/evaluation/BinaryClassEvaluation.h
| | D	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | D	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | D	src/libshogun/evaluation/CrossValidation.cpp
| | D	src/libshogun/evaluation/CrossValidation.h
| | D	src/libshogun/evaluation/Evaluation.h
| | D	src/libshogun/evaluation/MeanSquaredError.cpp
| | D	src/libshogun/evaluation/MeanSquaredError.h
| | D	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | D	src/libshogun/evaluation/MulticlassAccuracy.h
| | D	src/libshogun/evaluation/PRCEvaluation.cpp
| | D	src/libshogun/evaluation/PRCEvaluation.h
| | D	src/libshogun/evaluation/ROCEvaluation.cpp
| | D	src/libshogun/evaluation/ROCEvaluation.h
| | D	src/libshogun/evaluation/SplittingStrategy.cpp
| | D	src/libshogun/evaluation/SplittingStrategy.h
| | D	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | D	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| | D	src/libshogun/features/Alphabet.cpp
| | D	src/libshogun/features/Alphabet.h
| | D	src/libshogun/features/AttributeFeatures.cpp
| | D	src/libshogun/features/AttributeFeatures.h
| | D	src/libshogun/features/CombinedDotFeatures.cpp
| | D	src/libshogun/features/CombinedDotFeatures.h
| | D	src/libshogun/features/CombinedFeatures.cpp
| | D	src/libshogun/features/CombinedFeatures.h
| | D	src/libshogun/features/DotFeatures.cpp
| | D	src/libshogun/features/DotFeatures.h
| | D	src/libshogun/features/DummyFeatures.h
| | D	src/libshogun/features/ExplicitSpecFeatures.cpp
| | D	src/libshogun/features/ExplicitSpecFeatures.h
| | D	src/libshogun/features/FKFeatures.cpp
| | D	src/libshogun/features/FKFeatures.h
| | D	src/libshogun/features/FeatureTypes.h
| | D	src/libshogun/features/Features.cpp
| | D	src/libshogun/features/Features.h
| | D	src/libshogun/features/HashedWDFeatures.cpp
| | D	src/libshogun/features/HashedWDFeatures.h
| | D	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| | D	src/libshogun/features/HashedWDFeaturesTransposed.h
| | D	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| | D	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| | D	src/libshogun/features/LBPPyrDotFeatures.cpp
| | D	src/libshogun/features/LBPPyrDotFeatures.h
| | D	src/libshogun/features/Labels.cpp
| | D	src/libshogun/features/Labels.h
| | D	src/libshogun/features/PolyFeatures.cpp
| | D	src/libshogun/features/PolyFeatures.h
| | D	src/libshogun/features/RealFileFeatures.cpp
| | D	src/libshogun/features/RealFileFeatures.h
| | D	src/libshogun/features/SNPFeatures.cpp
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| | D	src/libshogun/features/SimpleFeatures.h
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| | D	src/libshogun/features/SparsePolyFeatures.cpp
| | D	src/libshogun/features/SparsePolyFeatures.h
| | D	src/libshogun/features/StreamingDotFeatures.h
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| | D	src/libshogun/features/StringFileFeatures.h
| | D	src/libshogun/features/Subset.cpp
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| | D	src/libshogun/features/TOPFeatures.cpp
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| | D	src/libshogun/features/WDFeatures.cpp
| | D	src/libshogun/features/WDFeatures.h
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| | D	src/libshogun/kernel/ANOVAKernel.cpp
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| | D	src/libshogun/kernel/AUCKernel.cpp
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| | D	src/libshogun/kernel/BesselKernel.cpp
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| | D	src/libshogun/kernel/Chi2Kernel.cpp
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| | D	src/libshogun/kernel/CommUlongStringKernel.cpp
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| | D	src/libshogun/kernel/CommWordStringKernel.cpp
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| | D	src/libshogun/kernel/DiceKernelNormalizer.h
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| | D	src/libshogun/kernel/DistantSegmentsKernel.cpp
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| | D	src/libshogun/kernel/HistogramIntersectionKernel.cpp
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| | D	src/libshogun/kernel/HistogramWordStringKernel.cpp
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| | D	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
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| | D	src/libshogun/kernel/Kernel.cpp
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| | D	src/libshogun/kernel/LinearKernel.cpp
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| | D	src/libshogun/kernel/LinearStringKernel.cpp
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| | D	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
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| | D	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
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| | D	src/libshogun/kernel/LogKernel.cpp
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| | D	src/libshogun/kernel/MatchWordStringKernel.cpp
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| | D	src/libshogun/kernel/MultiquadricKernel.cpp
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| | D	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
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| | D	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | D	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| | D	src/libshogun/kernel/OligoStringKernel.cpp
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| | D	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
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| | D	src/libshogun/kernel/PowerKernel.cpp
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| | D	src/libshogun/kernel/PyramidChi2.cpp
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| | D	src/libshogun/kernel/RationalQuadraticKernel.cpp
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| | D	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
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| | D	src/libshogun/kernel/RidgeKernelNormalizer.h
| | D	src/libshogun/kernel/SNPStringKernel.cpp
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| | D	src/libshogun/kernel/SalzbergWordStringKernel.cpp
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| | D	src/libshogun/kernel/SigmoidKernel.cpp
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| | D	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
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| | D	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
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| | D	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
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| | D	src/libshogun/kernel/SphericalKernel.cpp
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| | D	src/libshogun/kernel/SplineKernel.cpp
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| | D	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| | D	src/libshogun/kernel/StringKernel.h
| | D	src/libshogun/kernel/TStudentKernel.cpp
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| | D	src/libshogun/kernel/TanimotoKernelNormalizer.h
| | D	src/libshogun/kernel/TensorProductPairKernel.cpp
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| | D	src/libshogun/kernel/WaveletKernel.cpp
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| | D	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
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| | D	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
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| | D	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
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| | D	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
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| | D	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
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| | D	src/libshogun/lib/Compressor.cpp
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| | D	src/libshogun/lib/Cplex.cpp
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| | D	src/libshogun/lib/Mathematics.cpp
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| | D	src/libshogun/lib/SerializableAsciiFile.cpp
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| | D	src/libshogun/lib/SerializableXmlFile.cpp
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| | D	src/libshogun/lib/ShogunException.cpp
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| | D	src/libshogun/lib/Signal.cpp
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| | D	src/libshogun/lib/Time.cpp
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| | D	src/libshogun/lib/Trie.cpp
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| | D	src/libshogun/lib/__init__.py
| | D	src/libshogun/lib/arpack.cpp
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| | D	src/libshogun/lib/io.cpp
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| | D	src/libshogun/lib/lapack.cpp
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| | D	src/libshogun/lib/memory.cpp
| | D	src/libshogun/lib/memory.h
| | D	src/libshogun/lib/v_array.h
| | D	src/libshogun/machine/DistanceMachine.cpp
| | D	src/libshogun/machine/DistanceMachine.h
| | D	src/libshogun/machine/KernelMachine.cpp
| | D	src/libshogun/machine/KernelMachine.h
| | D	src/libshogun/machine/LinearMachine.cpp
| | D	src/libshogun/machine/LinearMachine.h
| | D	src/libshogun/machine/Machine.cpp
| | D	src/libshogun/machine/Machine.h
| | D	src/libshogun/machine/OnlineLinearMachine.cpp
| | D	src/libshogun/machine/OnlineLinearMachine.h
| | D	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | D	src/libshogun/modelselection/GridSearchModelSelection.h
| | D	src/libshogun/modelselection/ModelSelection.cpp
| | D	src/libshogun/modelselection/ModelSelection.h
| | D	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | D	src/libshogun/modelselection/ModelSelectionParameters.h
| | D	src/libshogun/modelselection/ParameterCombination.cpp
| | D	src/libshogun/modelselection/ParameterCombination.h
| | D	src/libshogun/preprocessor/ClassicIsomap.h
| | D	src/libshogun/preprocessor/ClassicMDS.cpp
| | D	src/libshogun/preprocessor/ClassicMDS.h
| | D	src/libshogun/preprocessor/DecompressString.h
| | D	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | D	src/libshogun/preprocessor/Isomap.h
| | D	src/libshogun/preprocessor/KernelPCACut.cpp
| | D	src/libshogun/preprocessor/KernelPCACut.h
| | D	src/libshogun/preprocessor/LandmarkIsomap.h
| | D	src/libshogun/preprocessor/LandmarkMDS.cpp
| | D	src/libshogun/preprocessor/LandmarkMDS.h
| | D	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | D	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | D	src/libshogun/preprocessor/LogPlusOne.cpp
| | D	src/libshogun/preprocessor/LogPlusOne.h
| | D	src/libshogun/preprocessor/NormOne.cpp
| | D	src/libshogun/preprocessor/NormOne.h
| | D	src/libshogun/preprocessor/PCA.cpp
| | D	src/libshogun/preprocessor/PCA.h
| | D	src/libshogun/preprocessor/Preprocessor.cpp
| | D	src/libshogun/preprocessor/Preprocessor.h
| | D	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | D	src/libshogun/preprocessor/PruneVarSubMean.h
| | D	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | D	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | D	src/libshogun/preprocessor/SimplePreprocessor.h
| | D	src/libshogun/preprocessor/SortUlongString.cpp
| | D	src/libshogun/preprocessor/SortUlongString.h
| | D	src/libshogun/preprocessor/SortWordString.cpp
| | D	src/libshogun/preprocessor/SortWordString.h
| | D	src/libshogun/preprocessor/SparsePreprocessor.h
| | D	src/libshogun/preprocessor/StringPreprocessor.h
| | D	src/libshogun/regression/KRR.cpp
| | D	src/libshogun/regression/KRR.h
| | D	src/libshogun/regression/Regression.h
| | D	src/libshogun/regression/svr/LibSVR.cpp
| | D	src/libshogun/regression/svr/LibSVR.h
| | D	src/libshogun/regression/svr/MKLRegression.cpp
| | D	src/libshogun/regression/svr/MKLRegression.h
| | D	src/libshogun/regression/svr/SVRLight.cpp
| | D	src/libshogun/regression/svr/SVRLight.h
| | D	src/libshogun/structure/DynProg.cpp
| | D	src/libshogun/structure/DynProg.h
| | D	src/libshogun/structure/IntronList.cpp
| | D	src/libshogun/structure/IntronList.h
| | D	src/libshogun/structure/Plif.cpp
| | D	src/libshogun/structure/Plif.h
| | D	src/libshogun/structure/PlifArray.cpp
| | D	src/libshogun/structure/PlifArray.h
| | D	src/libshogun/structure/PlifBase.h
| | D	src/libshogun/structure/PlifMatrix.cpp
| | D	src/libshogun/structure/PlifMatrix.h
| | D	src/libshogun/structure/SegmentLoss.cpp
| | D	src/libshogun/structure/SegmentLoss.h
| | D	src/libshogunui/GUIClassifier.cpp
| | D	src/libshogunui/GUIClassifier.h
| | D	src/libshogunui/GUICommands.h
| | D	src/libshogunui/GUIDistance.cpp
| | D	src/libshogunui/GUIDistance.h
| | D	src/libshogunui/GUIFeatures.cpp
| | D	src/libshogunui/GUIFeatures.h
| | D	src/libshogunui/GUIHMM.cpp
| | D	src/libshogunui/GUIHMM.h
| | D	src/libshogunui/GUIKernel.cpp
| | D	src/libshogunui/GUIKernel.h
| | D	src/libshogunui/GUILabels.cpp
| | D	src/libshogunui/GUILabels.h
| | D	src/libshogunui/GUIMath.cpp
| | D	src/libshogunui/GUIMath.h
| | D	src/libshogunui/GUIPluginEstimate.cpp
| | D	src/libshogunui/GUIPluginEstimate.h
| | D	src/libshogunui/GUIPreprocessor.cpp
| | D	src/libshogunui/GUIPreprocessor.h
| | D	src/libshogunui/GUISignals.cpp.orig
| | D	src/libshogunui/GUISignals.h
| | D	src/libshogunui/GUIStructure.cpp
| | D	src/libshogunui/GUIStructure.h
| | D	src/libshogunui/GUITime.cpp
| | D	src/libshogunui/GUITime.h
| | D	src/libshogunui/SGInterface.cpp
| | D	src/libshogunui/SGInterface.h
| | D	src/libshogunui/SyntaxHighLight.h
| | D	src/lua_modular/sg_print_functions.cpp
| | D	src/lua_modular/shogun.lua
| | D	src/lua_modular/swig_typemaps.i
| | D	src/matlab/MatlabInterface.cpp
| | D	src/matlab/MatlabInterface.h
| | D	src/octave/OctaveInterface.cpp
| | D	src/octave/OctaveInterface.h
| | D	src/octave_modular/sg_print_functions.cpp
| | D	src/octave_modular/swig_typemaps.i
| | D	src/python/PythonInterface.cpp
| | D	src/python/PythonInterface.h
| | D	src/python_modular/sg_print_functions.cpp
| | D	src/python_modular/swig_typemaps.i
| | D	src/r/RInterface.cpp
| | D	src/r/RInterface.h
| | D	src/r_modular/sg_print_functions.cpp
| | D	src/r_modular/swig_typemaps.i
| | D	src/ruby_modular/sg_print_functions.cpp
| | D	src/ruby_modular/swig_typemaps.i
| | A	src/shogun/base/DynArray.h
| | A	src/shogun/base/Parallel.cpp
| | A	src/shogun/base/Parallel.h
| | A	src/shogun/base/Parameter.cpp
| | A	src/shogun/base/Parameter.h
| | A	src/shogun/base/SGObject.cpp
| | A	src/shogun/base/SGObject.h
| | A	src/shogun/base/Version.cpp
| | A	src/shogun/base/Version.h
| | A	src/shogun/base/class_list.cpp.py
| | A	src/shogun/base/class_list.cpp.templ
| | A	src/shogun/base/class_list.h
| | A	src/shogun/base/init.cpp
| | A	src/shogun/base/init.h
| | A	src/shogun/classifier/AveragedPerceptron.cpp
| | A	src/shogun/classifier/AveragedPerceptron.h
| | A	src/shogun/classifier/GaussianNaiveBayes.cpp
| | A	src/shogun/classifier/GaussianNaiveBayes.h
| | A	src/shogun/classifier/KNN.cpp
| | A	src/shogun/classifier/KNN.h
| | A	src/shogun/classifier/KernelPerceptron.cpp
| | A	src/shogun/classifier/KernelPerceptron.h
| | A	src/shogun/classifier/LDA.cpp
| | A	src/shogun/classifier/LDA.h
| | A	src/shogun/classifier/LPBoost.cpp
| | A	src/shogun/classifier/LPBoost.h
| | A	src/shogun/classifier/LPM.cpp
| | A	src/shogun/classifier/LPM.h
| | A	src/shogun/classifier/Perceptron.cpp
| | A	src/shogun/classifier/Perceptron.h
| | A	src/shogun/classifier/PluginEstimate.cpp
| | A	src/shogun/classifier/PluginEstimate.h
| | A	src/shogun/classifier/SubGradientLPM.cpp
| | A	src/shogun/classifier/SubGradientLPM.h
| | A	src/shogun/classifier/__init__.py
| | A	src/shogun/classifier/mkl/MKL.cpp
| | A	src/shogun/classifier/mkl/MKL.h
| | A	src/shogun/classifier/mkl/MKLClassification.cpp
| | A	src/shogun/classifier/mkl/MKLClassification.h
| | A	src/shogun/classifier/mkl/MKLMultiClass.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClass.h
| | A	src/shogun/classifier/mkl/MKLMultiClassGLPK.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassGLPK.h
| | A	src/shogun/classifier/mkl/MKLMultiClassGradient.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassGradient.h
| | A	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| | A	src/shogun/classifier/mkl/MKLMultiClassOptimizationBase.h
| | A	src/shogun/classifier/mkl/MKLOneClass.cpp
| | A	src/shogun/classifier/mkl/MKLOneClass.h
| | A	src/shogun/classifier/svm/CPLEXSVM.cpp
| | A	src/shogun/classifier/svm/CPLEXSVM.h
| | A	src/shogun/classifier/svm/DomainAdaptationSVM.cpp
| | A	src/shogun/classifier/svm/DomainAdaptationSVM.h
| | A	src/shogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | A	src/shogun/classifier/svm/DomainAdaptationSVMLinear.h
| | A	src/shogun/classifier/svm/GMNPLib.cpp
| | A	src/shogun/classifier/svm/GMNPLib.h
| | A	src/shogun/classifier/svm/GMNPSVM.cpp
| | A	src/shogun/classifier/svm/GMNPSVM.h
| | A	src/shogun/classifier/svm/GNPPLib.cpp
| | A	src/shogun/classifier/svm/GNPPLib.h
| | A	src/shogun/classifier/svm/GNPPSVM.cpp
| | A	src/shogun/classifier/svm/GNPPSVM.h
| | A	src/shogun/classifier/svm/GPBTSVM.cpp
| | A	src/shogun/classifier/svm/GPBTSVM.h
| | A	src/shogun/classifier/svm/LaRank.cpp
| | A	src/shogun/classifier/svm/LaRank.h
| | A	src/shogun/classifier/svm/LibLinear.cpp
| | A	src/shogun/classifier/svm/LibLinear.h
| | A	src/shogun/classifier/svm/LibSVM.cpp
| | A	src/shogun/classifier/svm/LibSVM.h
| | A	src/shogun/classifier/svm/LibSVMMultiClass.cpp
| | A	src/shogun/classifier/svm/LibSVMMultiClass.h
| | A	src/shogun/classifier/svm/LibSVMOneClass.cpp
| | A	src/shogun/classifier/svm/LibSVMOneClass.h
| | A	src/shogun/classifier/svm/MPDSVM.cpp
| | A	src/shogun/classifier/svm/MPDSVM.h
| | A	src/shogun/classifier/svm/MultiClassSVM.cpp
| | A	src/shogun/classifier/svm/MultiClassSVM.h
| | A	src/shogun/classifier/svm/OnlineLibLinear.cpp
| | A	src/shogun/classifier/svm/OnlineLibLinear.h
| | A	src/shogun/classifier/svm/OnlineSVMSGD.cpp
| | A	src/shogun/classifier/svm/OnlineSVMSGD.h
| | A	src/shogun/classifier/svm/QPBSVMLib.cpp
| | A	src/shogun/classifier/svm/QPBSVMLib.h
| | A	src/shogun/classifier/svm/SGDQN.cpp
| | A	src/shogun/classifier/svm/SGDQN.h
| | A	src/shogun/classifier/svm/SVM.cpp
| | A	src/shogun/classifier/svm/SVM.h
| | A	src/shogun/classifier/svm/SVMLight.cpp
| | A	src/shogun/classifier/svm/SVMLight.h
| | A	src/shogun/classifier/svm/SVMLightOneClass.cpp
| | A	src/shogun/classifier/svm/SVMLightOneClass.h
| | A	src/shogun/classifier/svm/SVMLin.cpp
| | A	src/shogun/classifier/svm/SVMLin.h
| | A	src/shogun/classifier/svm/SVMOcas.cpp
| | A	src/shogun/classifier/svm/SVMOcas.h
| | A	src/shogun/classifier/svm/SVMSGD.cpp
| | A	src/shogun/classifier/svm/SVMSGD.h
| | A	src/shogun/classifier/svm/SVM_libsvm.cpp
| | A	src/shogun/classifier/svm/SVM_libsvm.h
| | A	src/shogun/classifier/svm/SVM_linear.cpp
| | A	src/shogun/classifier/svm/SVM_linear.h
| | A	src/shogun/classifier/svm/ScatterSVM.cpp
| | A	src/shogun/classifier/svm/ScatterSVM.h
| | A	src/shogun/classifier/svm/SubGradientSVM.cpp
| | A	src/shogun/classifier/svm/SubGradientSVM.h
| | A	src/shogun/classifier/svm/Tron.cpp
| | A	src/shogun/classifier/svm/Tron.h
| | A	src/shogun/classifier/svm/WDSVMOcas.cpp
| | A	src/shogun/classifier/svm/WDSVMOcas.h
| | A	src/shogun/classifier/svm/__init__.py
| | A	src/shogun/classifier/svm/gpdt.cpp
| | A	src/shogun/classifier/svm/gpdt.h
| | A	src/shogun/classifier/svm/gpdtsolve.cpp
| | A	src/shogun/classifier/svm/gpdtsolve.h
| | A	src/shogun/classifier/svm/gpm.cpp
| | A	src/shogun/classifier/svm/gpm.h
| | A	src/shogun/classifier/svm/libocas.cpp
| | A	src/shogun/classifier/svm/libocas.h
| | A	src/shogun/classifier/svm/libocas_common.h
| | A	src/shogun/classifier/svm/libqp.h
| | A	src/shogun/classifier/svm/libqp_splx.cpp
| | A	src/shogun/classifier/svm/pr_loqo.cpp
| | A	src/shogun/classifier/svm/pr_loqo.h
| | A	src/shogun/classifier/svm/ssl.cpp
| | A	src/shogun/classifier/svm/ssl.h
| | A	src/shogun/clustering/GMM.cpp
| | A	src/shogun/clustering/GMM.h
| | A	src/shogun/clustering/Hierarchical.cpp
| | A	src/shogun/clustering/Hierarchical.h
| | A	src/shogun/clustering/KMeans.cpp
| | A	src/shogun/clustering/KMeans.h
| | A	src/shogun/distance/AttenuatedEuclidianDistance.cpp
| | A	src/shogun/distance/AttenuatedEuclidianDistance.h
| | A	src/shogun/distance/BrayCurtisDistance.cpp
| | A	src/shogun/distance/BrayCurtisDistance.h
| | A	src/shogun/distance/CanberraMetric.cpp
| | A	src/shogun/distance/CanberraMetric.h
| | A	src/shogun/distance/CanberraWordDistance.cpp
| | A	src/shogun/distance/CanberraWordDistance.h
| | A	src/shogun/distance/ChebyshewMetric.cpp
| | A	src/shogun/distance/ChebyshewMetric.h
| | A	src/shogun/distance/ChiSquareDistance.cpp
| | A	src/shogun/distance/ChiSquareDistance.h
| | A	src/shogun/distance/CosineDistance.cpp
| | A	src/shogun/distance/CosineDistance.h
| | A	src/shogun/distance/CustomDistance.cpp
| | A	src/shogun/distance/CustomDistance.h
| | A	src/shogun/distance/Distance.cpp
| | A	src/shogun/distance/Distance.h
| | A	src/shogun/distance/EuclidianDistance.cpp
| | A	src/shogun/distance/EuclidianDistance.h
| | A	src/shogun/distance/GeodesicMetric.cpp
| | A	src/shogun/distance/GeodesicMetric.h
| | A	src/shogun/distance/HammingWordDistance.cpp
| | A	src/shogun/distance/HammingWordDistance.h
| | A	src/shogun/distance/JensenMetric.cpp
| | A	src/shogun/distance/JensenMetric.h
| | A	src/shogun/distance/KernelDistance.cpp
| | A	src/shogun/distance/KernelDistance.h
| | A	src/shogun/distance/ManhattanMetric.cpp
| | A	src/shogun/distance/ManhattanMetric.h
| | A	src/shogun/distance/ManhattanWordDistance.cpp
| | A	src/shogun/distance/ManhattanWordDistance.h
| | A	src/shogun/distance/MinkowskiMetric.cpp
| | A	src/shogun/distance/MinkowskiMetric.h
| | A	src/shogun/distance/RealDistance.h
| | A	src/shogun/distance/SimpleDistance.h
| | A	src/shogun/distance/SparseDistance.h
| | A	src/shogun/distance/SparseEuclidianDistance.cpp
| | A	src/shogun/distance/SparseEuclidianDistance.h
| | A	src/shogun/distance/StringDistance.h
| | A	src/shogun/distance/TanimotoDistance.cpp
| | A	src/shogun/distance/TanimotoDistance.h
| | A	src/shogun/distributions/Distribution.cpp
| | A	src/shogun/distributions/Distribution.h
| | A	src/shogun/distributions/GHMM.cpp
| | A	src/shogun/distributions/GHMM.h
| | A	src/shogun/distributions/Gaussian.cpp
| | A	src/shogun/distributions/Gaussian.h
| | A	src/shogun/distributions/HMM.cpp
| | A	src/shogun/distributions/HMM.h
| | A	src/shogun/distributions/Histogram.cpp
| | A	src/shogun/distributions/Histogram.h
| | A	src/shogun/distributions/LinearHMM.cpp
| | A	src/shogun/distributions/LinearHMM.h
| | A	src/shogun/distributions/PositionalPWM.cpp
| | A	src/shogun/distributions/PositionalPWM.h
| | A	src/shogun/evaluation/BinaryClassEvaluation.h
| | A	src/shogun/evaluation/ContingencyTableEvaluation.cpp
| | A	src/shogun/evaluation/ContingencyTableEvaluation.h
| | A	src/shogun/evaluation/CrossValidation.cpp
| | A	src/shogun/evaluation/CrossValidation.h
| | A	src/shogun/evaluation/Evaluation.h
| | A	src/shogun/evaluation/MeanSquaredError.cpp
| | A	src/shogun/evaluation/MeanSquaredError.h
| | A	src/shogun/evaluation/MulticlassAccuracy.cpp
| | A	src/shogun/evaluation/MulticlassAccuracy.h
| | A	src/shogun/evaluation/PRCEvaluation.cpp
| | A	src/shogun/evaluation/PRCEvaluation.h
| | A	src/shogun/evaluation/ROCEvaluation.cpp
| | A	src/shogun/evaluation/ROCEvaluation.h
| | A	src/shogun/evaluation/SplittingStrategy.cpp
| | A	src/shogun/evaluation/SplittingStrategy.h
| | A	src/shogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | A	src/shogun/evaluation/StratifiedCrossValidationSplitting.h
| | A	src/shogun/features/Alphabet.cpp
| | A	src/shogun/features/Alphabet.h
| | A	src/shogun/features/AttributeFeatures.cpp
| | A	src/shogun/features/AttributeFeatures.h
| | A	src/shogun/features/CombinedDotFeatures.cpp
| | A	src/shogun/features/CombinedDotFeatures.h
| | A	src/shogun/features/CombinedFeatures.cpp
| | A	src/shogun/features/CombinedFeatures.h
| | A	src/shogun/features/DotFeatures.cpp
| | A	src/shogun/features/DotFeatures.h
| | A	src/shogun/features/DummyFeatures.h
| | A	src/shogun/features/ExplicitSpecFeatures.cpp
| | A	src/shogun/features/ExplicitSpecFeatures.h
| | A	src/shogun/features/FKFeatures.cpp
| | A	src/shogun/features/FKFeatures.h
| | A	src/shogun/features/FeatureTypes.h
| | A	src/shogun/features/Features.cpp
| | A	src/shogun/features/Features.h
| | A	src/shogun/features/HashedWDFeatures.cpp
| | A	src/shogun/features/HashedWDFeatures.h
| | A	src/shogun/features/HashedWDFeaturesTransposed.cpp
| | A	src/shogun/features/HashedWDFeaturesTransposed.h
| | A	src/shogun/features/ImplicitWeightedSpecFeatures.cpp
| | A	src/shogun/features/ImplicitWeightedSpecFeatures.h
| | A	src/shogun/features/LBPPyrDotFeatures.cpp
| | A	src/shogun/features/LBPPyrDotFeatures.h
| | A	src/shogun/features/Labels.cpp
| | A	src/shogun/features/Labels.h
| | A	src/shogun/features/PolyFeatures.cpp
| | A	src/shogun/features/PolyFeatures.h
| | A	src/shogun/features/RealFileFeatures.cpp
| | A	src/shogun/features/RealFileFeatures.h
| | A	src/shogun/features/SNPFeatures.cpp
| | A	src/shogun/features/SNPFeatures.h
| | A	src/shogun/features/SimpleFeatures.h
| | A	src/shogun/features/SparseFeatures.h
| | A	src/shogun/features/SparsePolyFeatures.cpp
| | A	src/shogun/features/SparsePolyFeatures.h
| | A	src/shogun/features/StreamingDotFeatures.h
| | A	src/shogun/features/StreamingFeatures.h
| | A	src/shogun/features/StreamingSimpleFeatures.h
| | A	src/shogun/features/StreamingSparseFeatures.h
| | A	src/shogun/features/StreamingStringFeatures.h
| | A	src/shogun/features/StringFeatures.h
| | A	src/shogun/features/StringFileFeatures.h
| | A	src/shogun/features/Subset.cpp
| | A	src/shogun/features/Subset.h
| | A	src/shogun/features/TOPFeatures.cpp
| | A	src/shogun/features/TOPFeatures.h
| | A	src/shogun/features/WDFeatures.cpp
| | A	src/shogun/features/WDFeatures.h
| | A	src/shogun/features/__init__.py
| | A	src/shogun/kernel/ANOVAKernel.cpp
| | A	src/shogun/kernel/ANOVAKernel.h
| | A	src/shogun/kernel/AUCKernel.cpp
| | A	src/shogun/kernel/AUCKernel.h
| | A	src/shogun/kernel/AvgDiagKernelNormalizer.h
| | A	src/shogun/kernel/BesselKernel.cpp
| | A	src/shogun/kernel/BesselKernel.h
| | A	src/shogun/kernel/CauchyKernel.cpp
| | A	src/shogun/kernel/CauchyKernel.h
| | A	src/shogun/kernel/Chi2Kernel.cpp
| | A	src/shogun/kernel/Chi2Kernel.h
| | A	src/shogun/kernel/CircularKernel.cpp
| | A	src/shogun/kernel/CircularKernel.h
| | A	src/shogun/kernel/CombinedKernel.cpp
| | A	src/shogun/kernel/CombinedKernel.h
| | A	src/shogun/kernel/CommUlongStringKernel.cpp
| | A	src/shogun/kernel/CommUlongStringKernel.h
| | A	src/shogun/kernel/CommWordStringKernel.cpp
| | A	src/shogun/kernel/CommWordStringKernel.h
| | A	src/shogun/kernel/ConstKernel.cpp
| | A	src/shogun/kernel/ConstKernel.h
| | A	src/shogun/kernel/CustomKernel.cpp
| | A	src/shogun/kernel/CustomKernel.h
| | A	src/shogun/kernel/DiagKernel.cpp
| | A	src/shogun/kernel/DiagKernel.h
| | A	src/shogun/kernel/DiceKernelNormalizer.h
| | A	src/shogun/kernel/DistanceKernel.cpp
| | A	src/shogun/kernel/DistanceKernel.h
| | A	src/shogun/kernel/DistantSegmentsKernel.cpp
| | A	src/shogun/kernel/DistantSegmentsKernel.h
| | A	src/shogun/kernel/DotKernel.h
| | A	src/shogun/kernel/ExponentialKernel.cpp
| | A	src/shogun/kernel/ExponentialKernel.h
| | A	src/shogun/kernel/FirstElementKernelNormalizer.h
| | A	src/shogun/kernel/FixedDegreeStringKernel.cpp
| | A	src/shogun/kernel/FixedDegreeStringKernel.h
| | A	src/shogun/kernel/GaussianKernel.cpp
| | A	src/shogun/kernel/GaussianKernel.h
| | A	src/shogun/kernel/GaussianMatchStringKernel.cpp
| | A	src/shogun/kernel/GaussianMatchStringKernel.h
| | A	src/shogun/kernel/GaussianShiftKernel.cpp
| | A	src/shogun/kernel/GaussianShiftKernel.h
| | A	src/shogun/kernel/GaussianShortRealKernel.cpp
| | A	src/shogun/kernel/GaussianShortRealKernel.h
| | A	src/shogun/kernel/HistogramIntersectionKernel.cpp
| | A	src/shogun/kernel/HistogramIntersectionKernel.h
| | A	src/shogun/kernel/HistogramWordStringKernel.cpp
| | A	src/shogun/kernel/HistogramWordStringKernel.h
| | A	src/shogun/kernel/IdentityKernelNormalizer.h
| | A	src/shogun/kernel/InverseMultiQuadricKernel.cpp
| | A	src/shogun/kernel/InverseMultiQuadricKernel.h
| | A	src/shogun/kernel/Kernel.cpp
| | A	src/shogun/kernel/Kernel.h
| | A	src/shogun/kernel/KernelNormalizer.h
| | A	src/shogun/kernel/LinearKernel.cpp
| | A	src/shogun/kernel/LinearKernel.h
| | A	src/shogun/kernel/LinearStringKernel.cpp
| | A	src/shogun/kernel/LinearStringKernel.h
| | A	src/shogun/kernel/LocalAlignmentStringKernel.cpp
| | A	src/shogun/kernel/LocalAlignmentStringKernel.h
| | A	src/shogun/kernel/LocalityImprovedStringKernel.cpp
| | A	src/shogun/kernel/LocalityImprovedStringKernel.h
| | A	src/shogun/kernel/LogKernel.cpp
| | A	src/shogun/kernel/LogKernel.h
| | A	src/shogun/kernel/MatchWordStringKernel.cpp
| | A	src/shogun/kernel/MatchWordStringKernel.h
| | A	src/shogun/kernel/MultiquadricKernel.cpp
| | A	src/shogun/kernel/MultiquadricKernel.h
| | A	src/shogun/kernel/MultitaskKernelMaskNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelMaskPairNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelMklNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelPlifNormalizer.h
| | A	src/shogun/kernel/MultitaskKernelTreeNormalizer.h
| | A	src/shogun/kernel/OligoStringKernel.cpp
| | A	src/shogun/kernel/OligoStringKernel.h
| | A	src/shogun/kernel/PolyKernel.cpp
| | A	src/shogun/kernel/PolyKernel.h
| | A	src/shogun/kernel/PolyMatchStringKernel.cpp
| | A	src/shogun/kernel/PolyMatchStringKernel.h
| | A	src/shogun/kernel/PolyMatchWordStringKernel.cpp
| | A	src/shogun/kernel/PolyMatchWordStringKernel.h
| | A	src/shogun/kernel/PowerKernel.cpp
| | A	src/shogun/kernel/PowerKernel.h
| | A	src/shogun/kernel/PyramidChi2.cpp
| | A	src/shogun/kernel/PyramidChi2.h
| | A	src/shogun/kernel/RationalQuadraticKernel.cpp
| | A	src/shogun/kernel/RationalQuadraticKernel.h
| | A	src/shogun/kernel/RegulatoryModulesStringKernel.cpp
| | A	src/shogun/kernel/RegulatoryModulesStringKernel.h
| | A	src/shogun/kernel/RidgeKernelNormalizer.h
| | A	src/shogun/kernel/SNPStringKernel.cpp
| | A	src/shogun/kernel/SNPStringKernel.h
| | A	src/shogun/kernel/SalzbergWordStringKernel.cpp
| | A	src/shogun/kernel/SalzbergWordStringKernel.h
| | A	src/shogun/kernel/ScatterKernelNormalizer.h
| | A	src/shogun/kernel/SigmoidKernel.cpp
| | A	src/shogun/kernel/SigmoidKernel.h
| | A	src/shogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | A	src/shogun/kernel/SimpleLocalityImprovedStringKernel.h
| | A	src/shogun/kernel/SparseKernel.h
| | A	src/shogun/kernel/SparseSpatialSampleStringKernel.cpp
| | A	src/shogun/kernel/SparseSpatialSampleStringKernel.h
| | A	src/shogun/kernel/SpectrumMismatchRBFKernel.cpp
| | A	src/shogun/kernel/SpectrumMismatchRBFKernel.h
| | A	src/shogun/kernel/SpectrumRBFKernel.cpp
| | A	src/shogun/kernel/SpectrumRBFKernel.h
| | A	src/shogun/kernel/SphericalKernel.cpp
| | A	src/shogun/kernel/SphericalKernel.h
| | A	src/shogun/kernel/SplineKernel.cpp
| | A	src/shogun/kernel/SplineKernel.h
| | A	src/shogun/kernel/SqrtDiagKernelNormalizer.h
| | A	src/shogun/kernel/StringKernel.h
| | A	src/shogun/kernel/TStudentKernel.cpp
| | A	src/shogun/kernel/TStudentKernel.h
| | A	src/shogun/kernel/TanimotoKernelNormalizer.h
| | A	src/shogun/kernel/TensorProductPairKernel.cpp
| | A	src/shogun/kernel/TensorProductPairKernel.h
| | A	src/shogun/kernel/VarianceKernelNormalizer.h
| | A	src/shogun/kernel/WaveKernel.cpp
| | A	src/shogun/kernel/WaveKernel.h
| | A	src/shogun/kernel/WaveletKernel.cpp
| | A	src/shogun/kernel/WaveletKernel.h
| | A	src/shogun/kernel/WeightedCommWordStringKernel.cpp
| | A	src/shogun/kernel/WeightedCommWordStringKernel.h
| | A	src/shogun/kernel/WeightedDegreePositionStringKernel.cpp
| | A	src/shogun/kernel/WeightedDegreePositionStringKernel.h
| | A	src/shogun/kernel/WeightedDegreeRBFKernel.cpp
| | A	src/shogun/kernel/WeightedDegreeRBFKernel.h
| | A	src/shogun/kernel/WeightedDegreeStringKernel.cpp
| | A	src/shogun/kernel/WeightedDegreeStringKernel.h
| | A	src/shogun/kernel/ZeroMeanCenterKernelNormalizer.h
| | A	src/shogun/kernel/__init__.py
| | A	src/shogun/lib/Array.h
| | A	src/shogun/lib/Array2.h
| | A	src/shogun/lib/Array3.h
| | A	src/shogun/lib/AsciiFile.cpp
| | A	src/shogun/lib/AsciiFile.h
| | A	src/shogun/lib/BinaryFile.cpp
| | A	src/shogun/lib/BinaryFile.h
| | A	src/shogun/lib/BinaryStream.h
| | A	src/shogun/lib/BitString.h
| | A	src/shogun/lib/Cache.h
| | A	src/shogun/lib/Compressor.cpp
| | A	src/shogun/lib/Compressor.h
| | A	src/shogun/lib/Cplex.cpp
| | A	src/shogun/lib/Cplex.h
| | A	src/shogun/lib/DataType.cpp
| | A	src/shogun/lib/DataType.h
| | A	src/shogun/lib/DynInt.h
| | A	src/shogun/lib/DynamicArray.h
| | A	src/shogun/lib/DynamicObjectArray.h
| | A	src/shogun/lib/File.cpp
| | A	src/shogun/lib/File.h
| | A	src/shogun/lib/GCArray.h
| | A	src/shogun/lib/HDF5File.cpp
| | A	src/shogun/lib/HDF5File.h
| | A	src/shogun/lib/Hash.cpp
| | A	src/shogun/lib/Hash.h
| | A	src/shogun/lib/IOBuffer.cpp
| | A	src/shogun/lib/IOBuffer.h
| | A	src/shogun/lib/IndirectObject.h
| | A	src/shogun/lib/InputParser.h
| | A	src/shogun/lib/LibSVMFile.h
| | A	src/shogun/lib/List.h
| | A	src/shogun/lib/Loss.h
| | A	src/shogun/lib/Mathematics.cpp
| | A	src/shogun/lib/Mathematics.h
| | A	src/shogun/lib/MemoryMappedFile.h
| | A	src/shogun/lib/ParseBuffer.h
| | A	src/shogun/lib/SerializableAsciiFile.cpp
| | A	src/shogun/lib/SerializableAsciiFile.h
| | A	src/shogun/lib/SerializableAsciiReader00.cpp
| | A	src/shogun/lib/SerializableAsciiReader00.h
| | A	src/shogun/lib/SerializableFile.cpp
| | A	src/shogun/lib/SerializableFile.h
| | A	src/shogun/lib/SerializableHdf5File.cpp
| | A	src/shogun/lib/SerializableHdf5File.h
| | A	src/shogun/lib/SerializableHdf5Reader00.cpp
| | A	src/shogun/lib/SerializableHdf5Reader00.h
| | A	src/shogun/lib/SerializableJsonFile.cpp
| | A	src/shogun/lib/SerializableJsonFile.h
| | A	src/shogun/lib/SerializableJsonReader00.cpp
| | A	src/shogun/lib/SerializableJsonReader00.h
| | A	src/shogun/lib/SerializableXmlFile.cpp
| | A	src/shogun/lib/SerializableXmlFile.h
| | A	src/shogun/lib/SerializableXmlReader00.cpp
| | A	src/shogun/lib/SerializableXmlReader00.h
| | A	src/shogun/lib/Set.h
| | A	src/shogun/lib/ShogunException.cpp
| | A	src/shogun/lib/ShogunException.h
| | A	src/shogun/lib/Signal.cpp
| | A	src/shogun/lib/Signal.h
| | A	src/shogun/lib/SimpleFile.h
| | A	src/shogun/lib/StreamingAsciiFile.cpp
| | A	src/shogun/lib/StreamingAsciiFile.h
| | A	src/shogun/lib/StreamingFile.cpp
| | A	src/shogun/lib/StreamingFile.h
| | A	src/shogun/lib/StreamingFileFromFeatures.cpp
| | A	src/shogun/lib/StreamingFileFromFeatures.h
| | A	src/shogun/lib/StreamingFileFromSimpleFeatures.h
| | A	src/shogun/lib/StreamingFileFromSparseFeatures.h
| | A	src/shogun/lib/StreamingFileFromStringFeatures.h
| | A	src/shogun/lib/Time.cpp
| | A	src/shogun/lib/Time.h
| | A	src/shogun/lib/Trie.cpp
| | A	src/shogun/lib/Trie.h
| | A	src/shogun/lib/__init__.py
| | A	src/shogun/lib/arpack.cpp
| | A	src/shogun/lib/arpack.h
| | A	src/shogun/lib/common.h
| | A	src/shogun/lib/io.cpp
| | A	src/shogun/lib/io.h
| | A	src/shogun/lib/lapack.cpp
| | A	src/shogun/lib/lapack.h
| | A	src/shogun/lib/memory.cpp
| | A	src/shogun/lib/memory.h
| | A	src/shogun/lib/v_array.h
| | A	src/shogun/machine/DistanceMachine.cpp
| | A	src/shogun/machine/DistanceMachine.h
| | A	src/shogun/machine/KernelMachine.cpp
| | A	src/shogun/machine/KernelMachine.h
| | A	src/shogun/machine/LinearMachine.cpp
| | A	src/shogun/machine/LinearMachine.h
| | A	src/shogun/machine/Machine.cpp
| | A	src/shogun/machine/Machine.h
| | A	src/shogun/machine/OnlineLinearMachine.cpp
| | A	src/shogun/machine/OnlineLinearMachine.h
| | A	src/shogun/modelselection/GridSearchModelSelection.cpp
| | A	src/shogun/modelselection/GridSearchModelSelection.h
| | A	src/shogun/modelselection/ModelSelection.cpp
| | A	src/shogun/modelselection/ModelSelection.h
| | A	src/shogun/modelselection/ModelSelectionParameters.cpp
| | A	src/shogun/modelselection/ModelSelectionParameters.h
| | A	src/shogun/modelselection/ParameterCombination.cpp
| | A	src/shogun/modelselection/ParameterCombination.h
| | A	src/shogun/preprocessor/ClassicIsomap.h
| | A	src/shogun/preprocessor/ClassicMDS.cpp
| | A	src/shogun/preprocessor/ClassicMDS.h
| | A	src/shogun/preprocessor/DecompressString.h
| | A	src/shogun/preprocessor/DimensionReductionPreprocessor.h
| | A	src/shogun/preprocessor/Isomap.h
| | A	src/shogun/preprocessor/KernelPCACut.cpp
| | A	src/shogun/preprocessor/KernelPCACut.h
| | A	src/shogun/preprocessor/LandmarkIsomap.h
| | A	src/shogun/preprocessor/LandmarkMDS.cpp
| | A	src/shogun/preprocessor/LandmarkMDS.h
| | A	src/shogun/preprocessor/LocallyLinearEmbedding.cpp
| | A	src/shogun/preprocessor/LocallyLinearEmbedding.h
| | A	src/shogun/preprocessor/LogPlusOne.cpp
| | A	src/shogun/preprocessor/LogPlusOne.h
| | A	src/shogun/preprocessor/NormOne.cpp
| | A	src/shogun/preprocessor/NormOne.h
| | A	src/shogun/preprocessor/PCA.cpp
| | A	src/shogun/preprocessor/PCA.h
| | A	src/shogun/preprocessor/Preprocessor.cpp
| | A	src/shogun/preprocessor/Preprocessor.h
| | A	src/shogun/preprocessor/PruneVarSubMean.cpp
| | A	src/shogun/preprocessor/PruneVarSubMean.h
| | A	src/shogun/preprocessor/RandomFourierGaussPreproc.cpp
| | A	src/shogun/preprocessor/RandomFourierGaussPreproc.h
| | A	src/shogun/preprocessor/SimplePreprocessor.h
| | A	src/shogun/preprocessor/SortUlongString.cpp
| | A	src/shogun/preprocessor/SortUlongString.h
| | A	src/shogun/preprocessor/SortWordString.cpp
| | A	src/shogun/preprocessor/SortWordString.h
| | A	src/shogun/preprocessor/SparsePreprocessor.h
| | A	src/shogun/preprocessor/StringPreprocessor.h
| | A	src/shogun/regression/KRR.cpp
| | A	src/shogun/regression/KRR.h
| | A	src/shogun/regression/Regression.h
| | A	src/shogun/regression/svr/LibSVR.cpp
| | A	src/shogun/regression/svr/LibSVR.h
| | A	src/shogun/regression/svr/MKLRegression.cpp
| | A	src/shogun/regression/svr/MKLRegression.h
| | A	src/shogun/regression/svr/SVRLight.cpp
| | A	src/shogun/regression/svr/SVRLight.h
| | A	src/shogun/structure/DynProg.cpp
| | A	src/shogun/structure/DynProg.h
| | A	src/shogun/structure/IntronList.cpp
| | A	src/shogun/structure/IntronList.h
| | A	src/shogun/structure/Plif.cpp
| | A	src/shogun/structure/Plif.h
| | A	src/shogun/structure/PlifArray.cpp
| | A	src/shogun/structure/PlifArray.h
| | A	src/shogun/structure/PlifBase.h
| | A	src/shogun/structure/PlifMatrix.cpp
| | A	src/shogun/structure/PlifMatrix.h
| | A	src/shogun/structure/SegmentLoss.cpp
| | A	src/shogun/structure/SegmentLoss.h
| | A	src/shogun/ui/GUIClassifier.cpp
| | A	src/shogun/ui/GUIClassifier.h
| | A	src/shogun/ui/GUICommands.h
| | A	src/shogun/ui/GUIDistance.cpp
| | A	src/shogun/ui/GUIDistance.h
| | A	src/shogun/ui/GUIFeatures.cpp
| | A	src/shogun/ui/GUIFeatures.h
| | A	src/shogun/ui/GUIHMM.cpp
| | A	src/shogun/ui/GUIHMM.h
| | A	src/shogun/ui/GUIKernel.cpp
| | A	src/shogun/ui/GUIKernel.h
| | A	src/shogun/ui/GUILabels.cpp
| | A	src/shogun/ui/GUILabels.h
| | A	src/shogun/ui/GUIMath.cpp
| | A	src/shogun/ui/GUIMath.h
| | A	src/shogun/ui/GUIPluginEstimate.cpp
| | A	src/shogun/ui/GUIPluginEstimate.h
| | A	src/shogun/ui/GUIPreprocessor.cpp
| | A	src/shogun/ui/GUIPreprocessor.h
| | A	src/shogun/ui/GUISignals.cpp.orig
| | A	src/shogun/ui/GUISignals.h
| | A	src/shogun/ui/GUIStructure.cpp
| | A	src/shogun/ui/GUIStructure.h
| | A	src/shogun/ui/GUITime.cpp
| | A	src/shogun/ui/GUITime.h
| | A	src/shogun/ui/SGInterface.cpp
| | A	src/shogun/ui/SGInterface.h
| | A	src/shogun/ui/SyntaxHighLight.h
| |   
* | commit 96b067db1f7aaadca49ded0e00c4c6455318eb95
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:33:48 2011 +0200
| | 
| |     potential java pragmas to derive from Serializable
| | 
| | M	src/modular/SGBase.i
| |   
* | commit 90da60c9a979c3dd89597489a02cbf2815eafb90
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:28:16 2011 +0200
| | 
| |     some poim ppwm test code
| | 
| | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| |   
* | commit 6baeb64e3bfed49b75d9783ced984397a624c48a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:27:53 2011 +0200
| | 
| |     some more work on poims for ppwm
| | 
| | M	src/libshogun/distributions/PositionalPWM.cpp
| | M	src/libshogun/distributions/PositionalPWM.h
| |   
* | commit 3de2daa7a2a1cfe4b3aaa4f272b70e6f08f0dc85
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 17 21:26:46 2011 +0200
| | 
| |     make function return void
| | 
| | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| |   
* | commit 4d12457a7f284cde001b9683b9ba74110915625f
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sun Jul 17 01:20:02 2011 +0400
| | 
| |     Removed unnecessary java example minimal_test
| | 
| | D	examples/undocumented/java_modular/minimal_test.java
| |   
* | commit 887dcc89b982d23cabaf9e7da8e998e9dc42938f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 16 11:38:27 2011 +0200
| | 
| |     fix java install
| | 
| | M	src/Makefile.template
| |     
* |   commit 3e6d26092a63ca178c512e81bdb78a86418e1b1e
|\ \  Merge: 32a8bd0 563058f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jul 16 02:24:45 2011 -0700
| | | 
| | |     Merge pull request #205 from frx/streaming_1
| | |     
| | |     Added updating of current_num_features for StreamingSparseFeatures.
| | |    
| * | commit 563058f206dde0bdbbdc76ea3b91eca9b8b1a694
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 16 10:05:48 2011 +0530
| | | 
| | |     Modified bias scale value in SGD. Updated loss function to be the default used in the original svmsgd2.
| | | 
| | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | |    
| * | commit 8f1ed0d661845de84697e470793752d6020df472
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 15 20:28:29 2011 +0530
| | | 
| | |     Added braces around for loop.
| | | 
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | |    
| * | commit ca17a156463f2711d4f2a31b891b925d94e6b718
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Jul 15 20:18:04 2011 +0530
| |   
| |       Added updating of current_num_features for StreamingSparseFeatures.
| |   
| |   M	src/libshogun/features/StreamingSparseFeatures.h
| |   
* | commit 32a8bd092d4d9bcaa07a64902ae1590fb7db3d41
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Jul 16 00:04:30 2011 +0400
| | 
| |     Renamed and cleaned PCA
| | 
| | A	examples/undocumented/python_modular/preprocessor_pca_modular.py
| | D	examples/undocumented/python_modular/preprocessor_pcacut_modular.py
| | A	src/libshogun/preprocessor/PCA.cpp
| | A	src/libshogun/preprocessor/PCA.h
| | D	src/libshogun/preprocessor/PCACut.cpp
| | D	src/libshogun/preprocessor/PCACut.h
| | M	src/libshogun/preprocessor/Preprocessor.h
| | M	src/libshogunui/GUIPreprocessor.cpp
| | M	src/libshogunui/GUIPreprocessor.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Preprocessor.i
| | M	src/modular/Preprocessor_includes.i
| |     
* |   commit d531d4c096f6ece5daf73e6614bb6b37f341a7ed
|\ \  Merge: 377c55b c28e5bf
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 15 16:19:12 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |      
| * |   commit c28e5bfb22818626e54877bda89484294a40734f
| |\ \  Merge: 1d5de60 6609713
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 15 05:45:39 2011 -0700
| | | | 
| | | |     Merge pull request #204 from sploving/master
| | | |     
| | | |     fix some bug
| | | |     
| | * | commit 6609713ef50874951ec56e764a011aa659dfe3cf
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 19:33:49 2011 +0800
| | | | 
| | | |     SVMLight cannot serializated in Java
| | | | 
| | | | M	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | | |     
| | * | commit 5cf4afec4955b8f0a7ec2e022ad78772bbb6c4a7
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 19:32:18 2011 +0800
| | | | 
| | | |     fix some small bug
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | | M	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | |     
* | | | commit 377c55ba9ed01676e0fe47a47328b87a512d56d7
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 15 16:18:21 2011 +0200
| | |   
| | |       fix a few more java examples ... even more includes
| | |   
| | |   M	src/modular/Clustering.i
| | |   M	src/modular/Distance.i
| | |   M	src/modular/Distribution.i
| | |   M	src/modular/Evaluation.i
| | |   M	src/modular/Features.i
| | |   M	src/modular/Kernel.i
| | |   M	src/modular/Preprocessor.i
| | |   M	src/modular/Structure.i
| | |      
* | |   commit 1d5de600e6993ad9c0d36006386ead141fa0ee4b
|\ \ \  Merge: 97083bb af60362
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jul 15 14:39:57 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |       
| * | |   commit af60362941c2f25274698dcbab71a261e2b2f23e
| |\ \ \  Merge: 747718f 11771cc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jul 15 03:56:44 2011 -0700
| | | | | 
| | | | |     Merge pull request #203 from karlnapf/master
| | | | |     
| | | | |     some work towards computing confidence intervals and more precise cross-validation
| | | | |      
| | * | | commit 11771ccc19ea35914c29c9b347f6adbbd2215654
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:50:24 2011 +0200
| | | | | 
| | | | |     applied interface changes in cross-validation class
| | | | | 
| | | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | | |      
| | * | | commit ae9e30f418106ddadf638d566f85e13bf8ecd9f2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:50:10 2011 +0200
| | | | | 
| | | | |     apllied interface changes in other cross-validation class
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | |      
| | * | | commit b454101e6709b86a7e109ea0a1edc1116fadfbe2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Fri Jul 15 12:49:46 2011 +0200
| | | | | 
| | | | |     some work/interface changes towards computing confidence intervals
| | | | | 
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/evaluation/CrossValidation.h
| | | | |      
* | | | | commit 97083bb07d51170258797f3f726c6e5a25b703f3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jul 15 14:39:28 2011 +0200
| | | | | 
| | | | |     fix warnings in Load.java
| | | | | 
| | | | | M	examples/undocumented/java_modular/Load.java
| | | | |      
* | | | | commit db900c3f7b7273f66d132c5fa9d2c3e52e9bc7af
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Jul 15 14:38:35 2011 +0200
| | | |   
| | | |       fix org.shogun.SWIGTYPE_p_shogun__CFile issue in Features
| | | |   
| | | |   M	src/modular/Clustering.i
| | | |   M	src/modular/Distance.i
| | | |   M	src/modular/Distribution.i
| | | |   M	src/modular/Evaluation.i
| | | |   M	src/modular/Features.i
| | | |   M	src/modular/Preprocessor.i
| | | |   M	src/modular/Structure.i
| | | |       
* | | |   commit 747718f7e48e9fbadb5d23cf3a9d2f4cf775dc53
|\ \ \ \  Merge: 8567b11 ffb86ed
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Jul 15 02:48:46 2011 -0700
| | | |   
| | | |       Merge pull request #202 from sploving/master
| | | |       
| | | |       add all the remaining examples
| | | |     
| * | | commit ffb86edd60ababf4a65746582f5079b5882c35d2
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Fri Jul 15 17:38:29 2011 +0800
| | | | 
| | | |     add remaining examples
| | | | 
| | | | A	examples/undocumented/java_modular/mkl_binclass_modular.java
| | | | A	examples/undocumented/java_modular/mkl_multiclass_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_classicisomap_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_landmarkisomap_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_normone_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_pcacut_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_prunevarsubmean_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_randomfouriergausspreproc_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_sortulongstring_modular.java
| | | | A	examples/undocumented/java_modular/preprocessor_sortwordstring_modular.java
| | | | A	examples/undocumented/java_modular/serialization_complex_example.java
| | | |       
* | | |   commit 8567b111508ae1ff70afbc2101965b85c1b442f6
|\ \ \ \  Merge: 150cddb e1af5e5
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| |   Date:   Fri Jul 15 02:33:52 2011 -0700
| | | |   
| | | |       Merge pull request #201 from karlnapf/master
| | | |       
| | | |       working grid-search example in python_modular
| | | |     
| * | | commit e1af5e5dc94a565846897088a1921d17703b0dae
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:29:00 2011 +0200
| | | | 
| | | |     now uses function for automatic testing
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | |     
| * | | commit 5832c3a4ab035cc96a6035a2fd9d92f36e168683
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:19:07 2011 +0200
| | | | 
| | | |     little change in print_tree() method
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | |     
| * | | commit f4cd4d3dbe154d66f171dab7e073b25ce0dba2eb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 11:18:23 2011 +0200
| | | | 
| | | |     example for a simple grid-search
| | | | 
| | | | A	examples/undocumented/python_modular/modelselection_grid_search_simple_modular.py
| | | |     
| * | | commit 193483738deaae446c4817003b8b5379940704eb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:56:04 2011 +0200
| | | | 
| | | |     applied interface changes
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |     
| * | | commit 5c1f1b719c376ebedb22e3d09ea1b2d6dcad2573
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:55:31 2011 +0200
| | | | 
| | | |     added apply_to_machine method
| | | | 
| | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |     
| * | | commit f2c703a9b8aca3a4f62bc9d04889e7131a178ea3
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:55:16 2011 +0200
| | | | 
| | | |     changed select_model signature and added class comment
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelection.h
| | | |     
| * | | commit 06d7f7cec080518ef6ff2b236c15d93c9601f4da
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:54:55 2011 +0200
| | | | 
| | | |     changed select_model signature and added class comment
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.h
| | | |     
| * | | commit 3f2a0bf0edfecd2f1f1313261919937c47cdd15f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Fri Jul 15 10:12:00 2011 +0200
| | | | 
| | | |     prints combinations of parameter tree now
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit a66aafaddb95775a9f7d33d14f3b694bc565e510
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 14 21:41:51 2011 +0200
| | |   
| | |       added namespace for some methods
| | |   
| | |   M	src/modular/Modelselection.i
| | |      
* | |   commit 150cddbcebb843316a93bfd7aef23b498f4efa37
|\ \ \  Merge: 98d5021 899890c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 15 00:41:17 2011 -0700
| | |   
| | |       Merge pull request #200 from sploving/master
| | |       
| | |       add serialization example
| | |    
| * | commit 899890c1da1ab064d589c0a5e3388db2056e0e62
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 15 15:27:51 2011 +0800
| | | 
| | |     add serialization_svmlight_modular
| | | 
| | | A	examples/undocumented/java_modular/serialization_svmlight_modular.java
| | |    
* | | commit 98d5021c342102c4fe986a05cf971144a6388bdc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jul 15 09:10:58 2011 +0200
| | | 
| | |     fix compile errors due to *kernel SGVector changes
| | | 
| | | M	src/libshogunui/GUIKernel.cpp
| | | M	src/libshogunui/SGInterface.cpp
| | |      
* | |   commit f511a42e5c31e7ae0149f2cd38b82114188c2bae
|\ \ \  Merge: b29e944 a615b6e
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 14 23:57:11 2011 -0700
| | |   
| | |       Merge pull request #199 from sploving/master
| | |       
| | |       add remaining kernel java examples
| | |    
| * | commit a615b6ecf839e9e7e603be1da76f082451b7991a
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 15 11:15:58 2011 +0800
| | | 
| | |     add remaining kernel examples
| | | 
| | | A	examples/undocumented/java_modular/kernel_custom_modular.java
| | | A	examples/undocumented/java_modular/kernel_fisher_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_byte_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_word_modular.java
| | | A	examples/undocumented/java_modular/kernel_poly_match_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_poly_match_word_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_salzberg_word_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_spline_modular.java
| | |      
* | |   commit b29e944f186d7b68fde9f5fcd1b4da8c4356f34b
|\ \ \  Merge: f87cfdd d5988ef
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 14 13:07:06 2011 -0700
| | | | 
| | | |     Merge pull request #198 from karlnapf/master
| | | |     
| | | |     adding classes to Evaluation swig interface and doing some DynArray cleanups
| | | |     
| * | | commit d5988ef301459e0b7e3e84f47b24e5fdcc2be5ac
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 14 21:45:27 2011 +0200
| | |   
| | |       Squashed commit of the following:
| | |       
| | |       commit 116d110c03a9a4c394ecfbf52f11bb4eaac0d31e
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:40:53 2011 +0200
| | |       
| | |           -removed wrong SG_REF
| | |           -usage of SGVector constructor to create array
| | |       
| | |       commit 477f42508a5f3f78cf8f4f3f3d4013745e58193c
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:31:03 2011 +0200
| | |       
| | |           added classes
| | |       
| | |       commit b0399426af55d015a25104ce148b8f13beec6850
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:30:34 2011 +0200
| | |       
| | |           applied interface changes due to SGVector changes
| | |       
| | |       commit 614b7fb3a93834cbde3977432941dc775609b5d5
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:30:12 2011 +0200
| | |       
| | |           -generell cleanup
| | |           -usage of CDynamicObjectArray and CDynamicArray instead of DynArray
| | |           -SGVector cleanup
| | |       
| | |       commit 2dc5f3625ee1dcd864bf45fa4dbd0928fd6dd996
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:29:06 2011 +0200
| | |       
| | |           added shuffle() method
| | |       
| | |       commit c6acd061a3ec4f5fc595e9d12d6f3c3740fa14d9
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 21:28:57 2011 +0200
| | |       
| | |           added comment
| | |       
| | |       commit da48e781312037a8660eb01d5f4d4f47f9ff3d1b
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 17:06:38 2011 +0200
| | |       
| | |           Revert "made get_evaluation_direction() const"
| | |       
| | |           This reverts commit da627efed746f371a9d33bf2799670a072523f40.
| | |       
| | |       commit 321aeefe86b4f9808055c29cc2889b171b2e9eee
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 17:02:49 2011 +0200
| | |       
| | |           made get_evaluation_direction() const
| | |       
| | |       commit c89a51a6269df4f37b6ce01671457da24a7b0b8e
| | |       Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |       Date:   Thu Jul 14 16:50:36 2011 +0200
| | |       
| | |           made has_children() method const
| | |   
| | |   M	src/libshogun/evaluation/CrossValidation.cpp
| | |   M	src/libshogun/evaluation/SplittingStrategy.cpp
| | |   M	src/libshogun/evaluation/SplittingStrategy.h
| | |   M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | |   M	src/libshogun/features/Subset.cpp
| | |   M	src/libshogun/lib/DynamicArray.h
| | |   M	src/libshogun/lib/DynamicObjectArray.h
| | |   M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |   M	src/modular/Evaluation.i
| | |   M	src/modular/Evaluation_includes.i
| | |    
* | | commit f87cfddf41436b7b2023f3d751ed5bd3239399bf
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jul 14 17:42:50 2011 +0200
| |   
| |       change order of includes to fix
| |       
| |       <shogun.Modelselection.DynamicParameterCombinationArray; proxy of <Swig Object of type 'shogun::CDynamicObjectArray< shogun::CParameterCombination > *' at 0x936ead0> >
| |       
| |       problem.
| |   
| |   M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| |   M	src/modular/Modelselection.i
| |   
* | commit 2f5bb6e96dbe1db4b53721b624e33d78437e3eb3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 14 17:22:34 2011 +0200
| | 
| |     make distributions known from features
| | 
| | M	src/modular/Classifier.i
| | M	src/modular/Clustering.i
| | M	src/modular/Distance.i
| | M	src/modular/Evaluation.i
| | M	src/modular/Features.i
| | M	src/modular/Kernel.i
| | M	src/modular/Preprocessor.i
| | M	src/modular/Regression.i
| | M	src/modular/Structure.i
| |     
* |   commit e639ed1255a9984e49021b947fd422355b52214e
|\ \  Merge: 0849d96 686bc79
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 14 07:51:37 2011 -0700
| | | 
| | |     Merge pull request #196 from sploving/master
| | |     
| | |     add some kernel example for java_modular
| | |    
| * | commit 686bc79101f37784db1eb729ba1da126ecf5895f
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jul 14 22:47:44 2011 +0800
| | | 
| | |     added some kernel examples
| | | 
| | | M	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | A	examples/undocumented/java_modular/kernel_top_modular.java
| | | A	examples/undocumented/java_modular/kernel_weighted_degree_position_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_weighted_degree_string_modular.java
| | |      
* | |   commit 0849d963c03e34e5bc6698630e383bb0a5d7a82d
|\ \ \  Merge: 4d8af57 f2a445c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 14 06:34:33 2011 -0700
| | | | 
| | | |     Merge pull request #195 from karlnapf/master
| | | |     
| | | |     more tests
| | | |     
| * | | commit f2a445c639b007a43bc7e3de8c6eecdd0b9b8935
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:32:09 2011 +0200
| | | | 
| | | |     added some more in depth test-cases for CModelSelectionParameters::get_combinations()
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_model_selection_parameters_test.cpp
| | | |     
| * | | commit 8977bb4f4156caa28a3ba3079ebb8ec4c89880d9
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:28:49 2011 +0200
| | | | 
| | | |     Revert "new test cases"
| | | |     
| | | |     This reverts commit 2b2a1ed7cca98fd6d06591ef717b438de3ce036d.
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |     
| * | | commit 2b2a1ed7cca98fd6d06591ef717b438de3ce036d
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 14 15:27:08 2011 +0200
| | | | 
| | | |     new test cases
| | | | 
| | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | |       
* | | |   commit 4d8af57510f11a6fa40affe6b2bc9e3fd7686099
|\ \ \ \  Merge: 61647c8 32a8769
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Jul 14 15:32:54 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |        
| * | | |   commit 32a8769fd856db817256e522478933c1a75ee558
| |\ \ \ \  Merge: 140b139 c3f3a8a
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Thu Jul 14 06:19:05 2011 -0700
| | | | |   
| | | | |       Merge pull request #194 from karlnapf/master
| | | | |       
| | | | |       first working little python_modular example
| | | | |      
| | * | | commit c3f3a8aa6e075c47abd7600e0f2adc8ed72e2656
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 15:12:34 2011 +0200
| | | | | 
| | | | |     more info for print_tree()
| | | | | 
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | |      
| | * | | commit 79a12c7bf9afed5977d6bafc7faf0c2cac8b52b1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:54:15 2011 +0200
| | | | | 
| | | | |     make example work
| | | | | 
| | | | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | | | |      
| | * | | commit 7fed39876dbe0600b0c2defb42cd17f19341615d
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:53:57 2011 +0200
| | | | | 
| | | | |     made some methods const fixing compiler errors
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | |      
| | * | | commit ba19b199485eaa6c493f624cf12bad4fafafab9a
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jul 14 14:53:41 2011 +0200
| | | | | 
| | | | |     fixed type conversion error
| | | | | 
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | |      
| | * | | commit b645a0d7480cd0455448242eb1785b9163a1c4dd
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Thu Jul 14 14:53:31 2011 +0200
| | | |   
| | | |       more work towars usage of CDynamicObjectArray
| | | |   
| | | |   M	src/modular/Modelselection.i
| | | |   M	src/modular/Modelselection_includes.i
| | | |     
* | | | commit 61647c8929833caca6f4973252f3d41423bd83c2
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 14 15:31:28 2011 +0200
| | |   
| | |       convert set_position_weights and set_shifts to SGVector
| | |   
| | |   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | |   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | |    
* | | commit 140b13900e64a5fe51bda2391ff29c1dd679e612
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 14 09:02:58 2011 +0200
| | | 
| | |     add example for fisher test
| | | 
| | | A	examples/undocumented/python_modular/library_fisher2x3_modular.py
| | |    
* | | commit 8b3c5d3196154b5b1885f9609ffaef6656906cf4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 13 23:42:39 2011 +0200
| | | 
| | |     remove obsolete typemaps from csharp - nothing in cs works yet though
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |      
* | |   commit fbeb5405c86e48b2dacd57064c5081a072648ccc
|\ \ \  Merge: 8e6b8e0 1b2802d
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Wed Jul 13 23:39:43 2011 +0200
| | |   
| | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit 1b2802df817fadb1559c5b60856697133f4788c4
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 01:19:25 2011 +0400
| | | 
| | |     Modify - LandmarkIsomap example
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | |    
| * | commit c4fbb4a784b860cea5c4ada63b5b99395a9d1602
| | | Author: Evgeniy Andreev <gsomix@gmail.com>
| | | Date:   Thu Jul 14 01:10:36 2011 +0400
| | | 
| | |     Example preprocessor_isomap_modular is splitted into 2 parts with ClassicIsomap and LandmarkIsomap
| | | 
| | | A	examples/undocumented/python_modular/preprocessor_classicisomap_modular.py
| | | D	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | A	examples/undocumented/python_modular/preprocessor_landmarkisomap_modular.py
| | |      
| * |   commit a0c02ba1bed0a66975cb9b4530beb67efefc4619
| |\ \  Merge: 2f7d4e0 90b0f55
| | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Wed Jul 13 21:39:03 2011 +0400
| | |   
| | |       Merge branch 'master' of https://github.com/sploving/shogun
| | |    
| | * commit 90b0f55b0ebb9e46547f03a2e1671f69ea4eeda3
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:38:33 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | M	examples/undocumented/java_modular/kernel_anova_modular.java
| | |    
| | * commit 3e92b7df0c289539a2ba7812ddc970fca00d9a2e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:38:16 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | D	examples/undocumented/java_modular/test.java
| | |    
| | * commit 1566f21d032be0dfeae0ef1e11bc7a0013edb320
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 13 23:37:33 2011 +0800
| | | 
| | |     add some remaining exmaples
| | | 
| | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | A	examples/undocumented/java_modular/kernel_anova_modular.java
| | | A	examples/undocumented/java_modular/kernel_combined_modular.java
| | | A	examples/undocumented/java_modular/kernel_exponential_modular.java
| | | A	examples/undocumented/java_modular/kernel_histogram_word_string_modular.java
| | | A	examples/undocumented/java_modular/test.java
| | |      
| * |   commit 2f7d4e0cd778496848d300615d076479eacf752f
| |\ \  Merge: 259c5d3 63941c8
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Wed Jul 13 21:37:04 2011 +0400
| | | | 
| | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | |     
| | * | commit 63941c8ca4ac9d70ddacee3a7e8ea1cece980deb
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:24:15 2011 +0200
| | | | 
| | | |     completely reworked memory usage to now use the new CDynamicObjectArray and fixed many memory bugs
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |     
| | * | commit 55d3358189e9bd0c31d5a5c49843b9196cd16a2c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:23:35 2011 +0200
| | | | 
| | | |     various changes and bugfixes
| | | | 
| | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | |     
| | * | commit b3ee5bc25b98128ffcc53b854439bb1c138f6081
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:48 2011 +0200
| | | | 
| | | |     usage of new CDynamicObjectArray and method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | |     
| | * | commit 31e019bab21644fde36bc6198ed9975bb389df01
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:20 2011 +0200
| | | | 
| | | |     method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | |     
| | * | commit bbc6be68b093d6a3e4f85c2c7d8fef8b8750c3ea
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:22:11 2011 +0200
| | | | 
| | | |     usage of new CDynamicObjectArray and method rename
| | | | 
| | | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | |     
| | * | commit 47ced8efa6cbfa571f0f51f0f7a8dcf3d001aba6
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 19:21:40 2011 +0200
| | | | 
| | | |     added test for CModelSelectionParameters
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| | * | commit 3113df16a27660aa49a5edfa1318ba9aa66b531f
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 13:08:53 2011 +0200
| | | | 
| | | |     added test for CParameterCombination
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | |     
| | * | commit 8b89cd90c12fc34c0ca686fc6da5a56f5b07e1e7
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 12:59:54 2011 +0200
| | | | 
| | | |     added test for methods in CParameterCombination
| | | | 
| | | | A	examples/undocumented/libshogun/modelselection_parameter_combination_test.cpp
| | | |     
| | * | commit 3ea6132b6d78f25b79c57f9b8da59d90c65d1da2
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jul 13 12:55:35 2011 +0200
| | | | 
| | | |     reworked parameter_set_multiplication and leaf_sets_multiplication to use CDynamicObjectArray for input/output/processing
| | | | 
| | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | |       
| | * |   commit 6a80e2fe64ac563e17481a92d541a9016f7f4a11
| | |\ \  Merge: 08ba23a c43baca
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 16:25:47 2011 +0200
| | | | | 
| | | | |     Merge remote-tracking branch 'upstream/master'
| | | | |      
| | * | | commit 08ba23a4101acdc61d5543419ba94766700316c1
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 15:02:46 2011 +0200
| | | | | 
| | | | |     spelling mistakes
| | | | | 
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| | * | | commit 68726f5e1a8105a4dda4eb9f2c21fd9fbb73e2ba
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 14:56:10 2011 +0200
| | | | | 
| | | | |     Revert "made CDynamicObjectArray non-templated again. it now CSGObject pointers as CList"
| | | | |     
| | | | |     This reverts commit 5b5fca9c7a5508a041fa32a054ed5695ca000110.
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| | * | | commit 5b5fca9c7a5508a041fa32a054ed5695ca000110
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jul 11 14:24:40 2011 +0200
| | | | | 
| | | | |     made CDynamicObjectArray non-templated again. it now CSGObject pointers as CList
| | | | | 
| | | | | M	src/libshogun/base/DynArray.h
| | | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | |      
| * | | | commit 259c5d3278100bd2e530dd3c2bc98196847705ae
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Jul 13 20:34:41 2011 +0400
| | | | | 
| | | | |     Improved arpack wrapper
| | | | | 
| | | | | M	src/libshogun/lib/arpack.cpp
| | | | |      
| * | | | commit d66238c0fd97c797ef29b04c9696daba2fe064ca
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Wed Jul 13 20:34:27 2011 +0400
| | | | | 
| | | | |     Changed arpack mode at Locally Linear Embedding
| | | | | 
| | | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit 8e6b8e06dd86b27f762076fe990aa9ef926edc5b
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Wed Jul 13 23:37:51 2011 +0200
| | | |   
| | | |       - introduce lgammal
| | | |       - add display_vector for long double
| | | |       - change p-value computation to use floatmax_t and logarithmic_sum to increase robustness
| | | |   
| | | |   M	src/libshogun/lib/Mathematics.cpp
| | | |   M	src/libshogun/lib/Mathematics.h
| | | |       
* | | |   commit d801a246a1d7bbdfcb20114325ee771ca7b1cb11
|\ \ \ \  Merge: c43baca 3c0bb6e
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Tue Jul 12 23:33:26 2011 -0700
| | | |   
| | | |       Merge pull request #188 from frx/streaming_1
| | | |       
| | | |       OnlineLibLinear and some other minor changes
| | | |     
| * | | commit 3c0bb6e674c0c4cc7731d5f79de5918df0137bd1
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jul 13 09:03:59 2011 +0530
| | | | 
| | | |     Revert temp OnlineSVMSGD change.
| | | | 
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | |     
| * | | commit c4ec26bc3b911c43d7caf02a117d5411fac413c7
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jul 13 08:55:42 2011 +0530
| | | | 
| | | |     Revert temp SGD change.
| | | |     Added OnlineLibLinear using one solver.
| | | |     Change in StreamingSimpleFeatures, implementing dot() when called with another StreamingDotFeatures object.
| | | | 
| | | | A	src/libshogun/classifier/svm/OnlineLibLinear.cpp
| | | | A	src/libshogun/classifier/svm/OnlineLibLinear.h
| | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 58f3522f0ce2026908e063f39ba40e16cf4848b8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jul 11 18:08:09 2011 +0530
| | | | 
| | | |     Temp: Some debug outputs from svmsgd.
| | | | 
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | | M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | |     
| * | | commit 77e0762bdadc7712ac112a2dd384eb85838f725e
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Fri Jul 8 20:37:15 2011 +0530
| | |   
| | |       Changed default calibration sample to 1000 vectors in online SGD, and size of ring to be 1024 for StreamingSimpleFeatures.
| | |   
| | |   M	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | |   M	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | |   M	src/libshogun/features/StreamingSimpleFeatures.h
| | |    
* | | commit c43bacac388399b4374a34e8e9821e552ac12fc8
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 11 16:00:49 2011 +0200
| | | 
| | |     fix compilation of modular modelselection
| | | 
| | | M	src/modular/Modelselection.doxy
| | | M	src/modular/Modelselection.i
| | | M	src/modular/Modelselection_includes.i
| | |    
* | | commit 5de9c2ef3cd9a5b4b2e931c95b5a5cee4b20b728
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 11 15:41:44 2011 +0200
| | | 
| | |     use default init
| | | 
| | | M	data
| | | M	examples/undocumented/csharp_modular/minimal_test.cs
| | |      
* | |   commit 37817ad62f8c842421c864b584d7b45244d7ccae
|\ \ \  Merge: e3bcc1e 9cf7dbc
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Mon Jul 11 06:03:53 2011 -0700
| | |   
| | |       Merge pull request #187 from sploving/master
| | |       
| | |         add java features examples
| | |    
| * | commit 9cf7dbcfae6b17553edd8f905661368c7462f123
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Mon Jul 11 20:53:20 2011 +0800
| | | 
| | |     add java features examples
| | | 
| | | A	examples/undocumented/java_modular/features_simple_byte_modular.java
| | | A	examples/undocumented/java_modular/features_simple_longint_modular.java
| | | A	examples/undocumented/java_modular/features_simple_modular.java
| | | A	examples/undocumented/java_modular/features_simple_real_modular.java
| | | A	examples/undocumented/java_modular/features_snp_modular.java
| | | A	examples/undocumented/java_modular/features_string_char_compressed_modular.java
| | | A	examples/undocumented/java_modular/features_string_char_modular.java
| | | A	examples/undocumented/java_modular/features_string_file_char_modular.java
| | | A	examples/undocumented/java_modular/features_string_file_modular.java
| | | A	examples/undocumented/java_modular/features_string_hashed_wd_modular.java
| | | A	examples/undocumented/java_modular/features_string_sliding_window_modular.java
| | | A	examples/undocumented/java_modular/features_string_ulong_modular.java
| | | A	examples/undocumented/java_modular/features_string_word_modular.java
| | |      
* | |   commit e3bcc1ec97fb17c1ceb7128cb1abad7eae74967a
|\ \ \  Merge: ee98378 24d4066
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Mon Jul 11 06:00:43 2011 -0700
| | |   
| | |       Merge pull request #186 from karlnapf/master
| | |       
| | |       reworked memory managment of model selection framwork
| | |      
| * |   commit 24d4066a9a0c9fe42f6c6b0e9207a22631d1970c
| |\ \  Merge: f1a6877 ee98378
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Mon Jul 11 09:53:26 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master'
| | |       
| | |       Conflicts:
| | |       	data
| | |    
* | | commit ee983782cdf621eb33431258d89e8ecbaa90e926
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jul 10 23:44:43 2011 +0200
| | | 
| | |     fix java examples
| | | 
| | | M	data
| | | M	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | | M	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | |      
* | |   commit 268bccc3581abdcf722727a8445ad99e449299b0
|\ \ \  Merge: 419387b b0c3848
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/|   Date:   Sun Jul 10 13:24:10 2011 -0700
| | |   
| | |       Merge pull request #185 from sploving/master
| | |       
| | |       add remaining distribution java examples
| | |    
| * | commit b0c3848ef57d02eee26536af2ec39d2b9a54c05d
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Mon Jul 11 00:00:58 2011 +0800
| | | 
| | |     add distribution java examples
| | | 
| | | M	examples/undocumented/java_modular/Load.java
| | | A	examples/undocumented/java_modular/distribution_hmm_modular.java
| | | A	examples/undocumented/java_modular/distribution_linearhmm_modular.java
| | | A	examples/undocumented/java_modular/distribution_ppwm_modular.java
| | |    
* | | commit 419387b7c76f76a42ad40c2e91a2e70853da22c5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:36:48 2011 +0400
| | | 
| | |     Removed junk
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 46aed740d2abf4aa159c20a063b632d02c6d2fa9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:35:16 2011 +0400
| | | 
| | |     Modified preprocessors using arpack for new parameter
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 67826b5ab1495a74c5b172486a4768d05616e5cd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jul 10 02:34:30 2011 +0400
| | | 
| | |     Added Cholesky factorization for Arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |      
* | |   commit 08b175b3e47e04fc6535d42691ba0f92fb413a92
|\ \ \  Merge: 1119fc2 53b6f91
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Jul 9 11:35:23 2011 -0700
| | |   
| | |       Merge pull request #184 from sploving/master
| | |       
| | |       add remaining classifier java examples
| | |    
| * | commit 53b6f91a8c4deda23ac59fc1da1516b9b2f60ba2
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 23:37:36 2011 +0800
| | | 
| | |     add distribution_histogram_modular java example
| | | 
| | | A	examples/undocumented/java_modular/distribution_histogram_modular.java
| | |    
| * | commit 00b9a3cccfad0d93191133cd93a70948449da901
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 23:17:17 2011 +0800
| | | 
| | |     add clustering java examples
| | | 
| | | A	examples/undocumented/java_modular/clustering_hierarchical_modular.java
| | | A	examples/undocumented/java_modular/clustering_kmeans_modular.java
| | |    
| * | commit e34a3b896dc6ccf114cc0f96b25063715afc039e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Sat Jul 9 22:18:29 2011 +0800
| | | 
| | |     add remaining classifier java examples
| | | 
| | | A	examples/undocumented/java_modular/classifier_domainadaptationsvm_modular.java
| | | A	examples/undocumented/java_modular/classifier_svmlight_linear_term_modular.java
| | | A	examples/undocumented/java_modular/classifier_svmlight_modular.java
| | |      
* | |   commit 1119fc2b15d79702259de3b2616db306d65b57fa
|\ \ \  Merge: 57f2cfa 9fbef9c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jul 8 12:44:37 2011 -0700
| | |   
| | |       Merge pull request #183 from sploving/master
| | |       
| | |       add ModularTutorial mainpage
| | |    
| * | commit 9fbef9cfb5ee6e1a8b957f05bf7dd51357d98b7b
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 23:12:07 2011 +0800
| | | 
| | |     add java support in INSTALL file
| | | 
| | | M	src/INSTALL
| | |    
| * | commit 607aae443b644f9f718a01fa1a285b38eb0ac50c
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 22:56:12 2011 +0800
| | | 
| | |     add ModularTutorial mainpage for java
| | | 
| | | M	doc/pages/ModularTutorial.mainpage
| | |    
| * | commit 1dac476afccde86a7efc5980e9af6f033d7c4111
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jul 8 21:20:35 2011 +0800
| | | 
| | |     add java support in Installation.mainpage
| | | 
| | | M	doc/pages/Installation.mainpage
| | |    
| | * commit f1a687730bb9855434cc7d5e5ca59c5732b2e924
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jul 11 09:50:34 2011 +0200
| | | 
| | |     made an helper method private
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 7bac23f6a8bb9d175ddb28818e054d9302844f57
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 22:06:32 2011 +0200
| | | 
| | |     usage of DynamicObjectArray for children nodes
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit c2aac4f3a7f156bd43b2a94969641abd606984e3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:53:40 2011 +0200
| | | 
| | |     set_element of same element with refcount=1 now does not delete element anymore
| | | 
| | | M	src/libshogun/lib/DynamicObjectArray.h
| | |    
| | * commit 0483ab5ec4bc404a0f7dc1512aa9fafc07817644
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:53:12 2011 +0200
| | | 
| | |     -removed delete method of CParameterCombination
| | |     -usage of SG_REF/SG_Unref
| | |     -minor memory managment changes in CParameterCombination
| | |     (memclean according to valgrind)
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit e7ffe249af08e9de56bb2eaf6e1436cb6aeb8f22
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:06:47 2011 +0200
| | | 
| | |     Revert "memory errors"
| | |     
| | |     This reverts commit 2987bb07a6bd66eec450fd4ca2b97664041837a4.
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 2987bb07a6bd66eec450fd4ca2b97664041837a4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:05:37 2011 +0200
| | | 
| | |     memory errors
| | |     Revert "made CParameterCombination inherit from CSGObject"
| | |     
| | |     This reverts commit d350274eb981dcb8b9cbc268b1ba93490a4ec4c9.
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit cfd2a4060ed75ff2f6dba376f6a741ddf9d9e496
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sat Jul 9 21:00:45 2011 +0200
| | | 
| | |     Revert "initial work towards usage of CDynamicObjectArray"
| | |     
| | |     This reverts commit 282605933f1f6595febda760e7d4f01af6fd2221.
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit 01baecc3de29e4fb58d47523a58eb77d455b2179
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:53:56 2011 +0200
| | | 
| | |     include cleanup
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 48f29ac5938f02dcc2f05fa3b26f826d1951111b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:52:11 2011 +0200
| | | 
| | |     added dynamic cast to ensure generic type is of type CSGObject
| | | 
| | | M	src/libshogun/lib/DynamicObjectArray.h
| | |      
| | *   commit e2d17fb307d3062762e8d01b4fd64cadc73f7c0c
| | |\  Merge: e909efa 57f2cfa
| |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Fri Jul 8 10:25:33 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master' into python_zeugs
| | |       
| | |       Conflicts:
| | |       	src/libshogun/lib/Mathematics.cpp
| | |    
* | | commit 57f2cfadd7b1241a4a271b5653db49a84b6062fe
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jul 8 12:23:28 2011 +0400
| | | 
| | |     Fixed ambiguous ambiguity
| | | 
| | | M	src/libshogun/lib/Mathematics.cpp
| | |    
| | * commit e909efabd8ce1dc9114b1e20dcb1d66573d6717e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Fri Jul 8 10:12:47 2011 +0200
| | | 
| | |     fixing an abigious call compile error
| | | 
| | | M	src/libshogun/lib/Mathematics.cpp
| | |      
| | *   commit ecf1d810b82b56d7c8457933e93eaf75e0188269
| | |\  Merge: 2826059 eddc83a
| |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Fri Jul 8 09:58:36 2011 +0200
| | |   
| | |       Merge remote-tracking branch 'upstream/master'
| | |      
* | |   commit eddc83a2db2872b62e21260392d517397da735fe
|\ \ \  Merge: afbb4cf eeb0db5
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 22:47:42 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit eeb0db58375ea01d770d7af53e602931cb53c3d0
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:33:18 2011 +0400
| | | | 
| | | |     Removed wrong example
| | | | 
| | | | D	examples/undocumented/python_modular/graphical/swissroll_lle.py
| | | |     
| * | | commit da3af461ae10473f3bf3c4c0fc89516fb7d0ca84
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:31:22 2011 +0400
| | | | 
| | | |     Updated data
| | | | 
| | | | M	data
| | | |     
| * | | commit 393de5cad7531c071c414dad47cc886ddb6fd513
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jul 7 23:31:12 2011 +0400
| | | | 
| | | |     Moved swissroll example to subdir, added hemisphere example
| | | | 
| | | | A	examples/undocumented/python_modular/graphical/dimreduct/hemisphere.py
| | | | A	examples/undocumented/python_modular/graphical/dimreduct/swissroll.py
| | | | D	examples/undocumented/python_modular/graphical/swissroll.py
| | | | A	examples/undocumented/python_modular/graphical/swissroll_lle.py
| | | |       
| * | |   commit 539aaebfda725c0d5db850941b110de49ef2c5a3
| |\ \ \  Merge: 285cdee e5e175f
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jul 7 22:27:25 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit 285cdeeea3f24b49e8407c6cb2b14a0a5f5ccf04
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jul 7 22:26:03 2011 +0400
| | | | | 
| | | | |     Added ARPACK support for LocallyLinearEmbedding
| | | | | 
| | | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | |      
* | | | | commit afbb4cffbccb84f372949d034ca9e60eecad88e1
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jul 7 22:44:22 2011 +0200
| | | |   
| | | |       fix matrix order
| | | |   
| | | |   M	src/libshogun/features/SNPFeatures.cpp
| | | |   M	src/libshogun/features/SNPFeatures.h
| | | |       
* | | |   commit e5e175f2832ff19d1bf06f1466c34405fef321f9
|\ \ \ \  Merge: 37fcfdc b93b623
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jul 7 10:52:36 2011 -0700
| | | |   
| | | |       Merge pull request #181 from frx/streaming_1
| | | |       
| | | |       OnlineLinearMachine minor modifications
| | | |     
| * | | commit b93b6235113a09158ace2b553cebd96b347b7d3a
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jul 7 21:53:01 2011 +0530
| | | | 
| | | |     Rename apply_to_this_example to apply_to_current_example() in OnlineLinearMachine.
| | | | 
| | | | M	src/libshogun/machine/OnlineLinearMachine.cpp
| | | | M	src/libshogun/machine/OnlineLinearMachine.h
| | | |     
| * | | commit 827f72a446323d771889658e57519ffe3f00fae2
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Thu Jul 7 21:47:14 2011 +0530
| | |   
| | |       Made a check for whether the parser is running already in start_parser().
| | |       Implemented the apply() function for OnlineLinearMachine.
| | |   
| | |   M	src/libshogun/lib/InputParser.h
| | |   M	src/libshogun/machine/OnlineLinearMachine.cpp
| | |   M	src/libshogun/machine/OnlineLinearMachine.h
| | |    
* | | commit 37fcfdc4c5a3dcea44dbbc6d35c578f3866a2e92
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 17:38:48 2011 +0200
| | | 
| | |     properly do the templating with friends
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |      
* | |   commit e630eb250bc199a14ef0de43b538f439294dc8da
|\ \ \  Merge: 5bd07dc 111a5a7
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jul 7 16:51:38 2011 +0200
| | |   
| | |       Merge branch 'master' of github.com:shogun-toolbox/shogun into fisher
| | |      
| * |   commit 111a5a7eb460280fc9d76307c09e4529aefe5777
| |\ \  Merge: c49ac89 aaf13bf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 06:49:03 2011 -0700
| | | | 
| | | |     Merge pull request #179 from karlnapf/master
| | | |     
| | | |     error correction and generic DynamicObjectArray
| | | |     
* | | | commit 5bd07dc10f21e8b0ad3a63b5943d97a628352f03
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 16:50:28 2011 +0200
| | | | 
| | | |     add fishers statistics test for 2x3 tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.cpp
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
* | | | commit 52f2f0ae5a6dcbc77a9ff0ea776e2a0aaf646346
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 16:50:04 2011 +0200
| | | | 
| | | |     tell swig that apply returns a new object
| | | | 
| | | | M	src/modular/Classifier.i
| | | |     
* | | | commit e2e4701b1c64e341a69d6127ba9a2c368c91fb20
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 09:07:46 2011 +0200
| | | | 
| | | |     add function to test for multiple tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
* | | | commit 52350ee2d4921532e6aa6696ffa3e68d06b99aec
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jul 7 09:06:41 2011 +0200
| | | | 
| | | |     introduce fishers exact test for 3x2 tables
| | | | 
| | | | M	src/libshogun/lib/Mathematics.cpp
| | | | M	src/libshogun/lib/Mathematics.h
| | | |     
| | | * commit 282605933f1f6595febda760e7d4f01af6fd2221
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 17:01:54 2011 +0200
| | | | 
| | | |     initial work towards usage of CDynamicObjectArray
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |     
| | | * commit 4568913ae2ecea93097b30c9315ec71142230ada
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 17:00:51 2011 +0200
| | | | 
| | | |     change of pointer usage
| | | | 
| | | | M	src/libshogun/lib/DynamicObjectArray.h
| | | |     
| | | * commit 5c0f6e566c1d0b3472d6b69d7290a3ccfe6a3c0a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 16:02:38 2011 +0200
| | | | 
| | | |     include cleanup
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |       
| | | *   commit f70d406884a196de574532d7cbbdcd600b02e9e5
| | | |\  Merge: 8fb5235 aaf13bf
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Thu Jul 7 16:00:16 2011 +0200
| | | |   
| | | |       Merge branch 'master' into python_zeugs
| | | |       
| | * |   commit aaf13bfb44a40000c0cd666b4cc92e6556d6abe7
| | |\ \  Merge: b5719cc c49ac89
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Thu Jul 7 15:45:42 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| * | |   commit c49ac898f33f8443f7f52a194c3b5e3a5bd4f8cb
| |\ \ \  Merge: a0d8aa3 c4334b7
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Jul 7 01:48:21 2011 -0700
| | | |   
| | | |       Merge pull request #178 from karlnapf/master
| | | |       
| | | |       DynamicObjectArray
| | | |     
| | * | commit b5719ccea7ad1052e75e5a721e355e56a944dabe
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jul 7 14:02:36 2011 +0200
| | | | 
| | | |     applied name change of DynamicObjectArray which is in addition now generic
| | | | 
| | | | M	src/libshogun/base/DynArray.h
| | | |     
| | * | commit 62453666c1b3efde0a3e8dd4d10c346bc9d33441
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Thu Jul 7 14:01:59 2011 +0200
| | |   
| | |       made generic to have type safety
| | |   
| | |   M	src/libshogun/lib/DynamicObjectArray.h
| | |      
| | *   commit 8fb5235f6ee70d050248fd9c57c7f49243b0e971
| | |\  Merge: ce84d3f c4334b7
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Thu Jul 7 10:48:09 2011 +0200
| | |   
| | |       Merge branch 'master' into python_zeugs
| | |    
| * | commit c4334b7391b11573d6818161a8f7ea53d9ff36f8
|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Thu Jul 7 10:41:15 2011 +0200
| |   
| |       -renamed DynamicArrayPtr to DynamicObjectArray
| |       -added SG_REF/SG_UNREF treatment of elements
| |   
| |   D	src/libshogun/lib/DynamicArrayPtr.h
| |   A	src/libshogun/lib/DynamicObjectArray.h
| |     
* |   commit a0d8aa34b0ee15601bfa2e81e6b140ba5fe44307
|\ \  Merge: 40a4ea7 e72ed0b
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 00:10:08 2011 -0700
| | | 
| | |     Merge pull request #177 from frx/streaming_1
| | |     
| | |     OnlineSVMSGD with associated classes
| | |    
| * | commit e72ed0bd7f20e8117fadd1c2d9814bb71770bc60
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jul 7 08:03:37 2011 +0530
| | | 
| | |     Made an online version of sgd - OnlineSVMSGD, based on the original SVMSGD in shogun.
| | | 
| | | A	src/libshogun/classifier/svm/OnlineSVMSGD.cpp
| | | A	src/libshogun/classifier/svm/OnlineSVMSGD.h
| | | M	src/libshogun/classifier/svm/SVMSGD.h
| | | A	src/libshogun/machine/OnlineLinearMachine.cpp
| | | A	src/libshogun/machine/OnlineLinearMachine.h
| | |    
| * | commit 9f7011e344917dc1200a55878b97abdb4b63db5c
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jul 7 07:40:32 2011 +0530
| | | 
| | |     Trivial commit.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | |    
| * | commit 04b8112a6633a9ea68773b754e462e60bae07a43
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Tue Jul 5 01:36:34 2011 +0530
| |   
| |       Added a function to cancel the parse thread. And another to expand a vector upto the dimensionality of the features in StreamingDotFeatures.
| |   
| |   M	src/libshogun/classifier/svm/SVMSGD.h
| |   M	src/libshogun/features/StreamingDotFeatures.h
| |   M	src/libshogun/features/StreamingSimpleFeatures.h
| |   M	src/libshogun/lib/InputParser.h
| |   M	src/libshogun/lib/ParseBuffer.h
| |   
* | commit 40a4ea7c3a8d8bc1acca7de6417b9a1acbf41869
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:19:13 2011 +0400
| | 
| |     Another one crazy fix for dgetri wrapper
| | 
| | M	src/libshogun/lib/lapack.cpp
| |   
* | commit 502bd568b5cab63e9a89cb0d0203463bafe60abe
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:16:31 2011 +0400
| | 
| |     Fix for wrappers
| | 
| | M	src/libshogun/lib/lapack.cpp
| | M	src/libshogun/lib/lapack.h
| |   
* | commit a827fb9e4312a075a21ee25614947d4c8e49f8df
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:09:58 2011 +0400
| | 
| |     Fix for dgetri definition
| | 
| | M	src/libshogun/lib/lapack.h
| |   
* | commit 06c39dfb2f0c4e90179cff956bdd0edc0847eebd
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jul 7 04:06:44 2011 +0400
| | 
| |     Fix for dgetr{i,f}
| | 
| | M	src/libshogun/lib/lapack.cpp
| | M	src/libshogun/lib/lapack.h
| |     
* |   commit ae673e4eb61c5e150a1d6ec7cc2f495dd24b487e
|\ \  Merge: 6b14520 120604e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 02:02:01 2011 +0200
| | | 
| | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | |    
| * | commit 120604e8b2fcefa4ee9f630a239944cba19166e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 03:58:53 2011 +0400
| | | 
| | |     An attempt to make arpack compile without atlas
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/lapack.cpp
| | | M	src/libshogun/lib/lapack.h
| | |    
| * | commit 30ca8a35331174f6cf49baf02b424f3e6d07227c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 03:14:31 2011 +0400
| | | 
| | |     Fixed compilation error of arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |    
| * | commit e44411c5cb95a56531ff9f589557f654c20fb2f1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 02:44:13 2011 +0400
| | | 
| | |     ARPACK wrapper improvements
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | |    
| * | commit fb9607384b61a783346a72b11442bd03af5cea93
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jul 7 02:15:06 2011 +0400
| | | 
| | |     Some more doc for dimreduction preprocessors
| | | 
| | | M	src/libshogun/preprocessor/ClassicIsomap.h
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | M	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | |    
* | | commit 6b14520c511729377fccefab2467d287d5ef28c3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Jul 7 02:01:31 2011 +0200
| | | 
| | |     add helper function to compute 3x2 table
| | | 
| | | M	src/libshogun/features/SNPFeatures.cpp
| | | M	src/libshogun/features/SNPFeatures.h
| | |    
* | | commit c0e495d47437f666c2d4308dc705a77901f787fb
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jul 7 02:01:12 2011 +0200
| |   
| |       remove obsolete swig wrapper
| |   
| |   M	src/libshogun/machine/LinearMachine.h
| |     
* |   commit 172024edef5b6de876e7cd82ea6b5a0ef05d26d3
|\ \  Merge: db4dbc6 e04e91c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 6 08:52:42 2011 -0700
| | | 
| | |     Merge pull request #176 from sploving/master
| | |     
| | |     add some preprocessor examples
| | |    
| * | commit e04e91c70dc6b20fa8501161436bb47847929e1e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 23:33:38 2011 +0800
| | | 
| | |     add some preprocessor examples
| | | 
| | | A	examples/undocumented/java_modular/preprocessor_classicmds_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_isomap_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_kernelpcacut_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_landmarkmds_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_locallylinearembedding_modular.java
| | | A	examples/undocumented/java_modular/preprocessor_logplusone_modular.java
| | |      
* | |   commit db4dbc6543098e7dccf9601a331ca4f6c3388c00
|\ \ \  Merge: cfc559d 7850285
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 07:48:26 2011 -0700
| | |   
| | |       Merge pull request #175 from sploving/master
| | |       
| | |       add memleak example
| | |    
| * | commit 785028541fb88520b4d2083e049a6bf793073dec
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 22:45:21 2011 +0800
| | | 
| | |     add tests_check_commonwordkernel_memleak_modular example
| | | 
| | | A	examples/undocumented/java_modular/tests_check_commwordkernel_memleak_modular.java
| | |    
* | | commit cfc559dbebc9b6ee762c6a93956d055feb470356
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jul 6 13:18:43 2011 +0200
| | | 
| | |     (temporary?) fix for java & regression: since LibSVR etc are derived
| | |     from SVM (which is in module classifiers) we need to import Classifiers
| | |     too (in Regression.i and also in the regression*.java examples) to fix
| | |     compilation issues.
| | | 
| | | M	examples/undocumented/java_modular/regression_krr_modular.java
| | | M	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | M	examples/undocumented/java_modular/regression_svrlight_modular.java
| | | M	src/modular/Regression.i
| | |      
* | |   commit f23f64aa00b584ec23acaccd72d8ec7dcb8d8e19
|\ \ \  Merge: 2fc6eb1 d05e6bb
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 01:32:06 2011 -0700
| | |   
| | |       Merge pull request #173 from sploving/master
| | |       
| | |       improve typemap for jblas
| | |    
| * | commit d05e6bbf6e7a106d0c6025152760557ab4fcca5e
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 16:28:12 2011 +0800
| | | 
| | |     improve jblas typemap for various types
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |      
* | |   commit 2fc6eb121853861bb0a06ea9a86ddb89d86ed38b
|\ \ \  Merge: e7e71c8 6e66f91
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Wed Jul 6 00:26:08 2011 -0700
| | |   
| | |       Merge pull request #172 from sploving/master
| | |       
| | |       support other types for jblas and add regression examples
| | |    
| * | commit 6e66f91f175f8a11bbb818d8a34a34e16e5bbaf5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 15:20:15 2011 +0800
| | | 
| | |     add regression examples for java_modular
| | | 
| | | A	examples/undocumented/java_modular/regression_krr_modular.java
| | | A	examples/undocumented/java_modular/regression_libsvr_modular.java
| | | A	examples/undocumented/java_modular/regression_svrlight_modular.java
| | |    
| * | commit 59fe8420b2c562dc5d8957a744c6c333283698e8
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jul 6 15:19:02 2011 +0800
| | | 
| | |     support other types for jblas
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |      
* | |   commit e7e71c81a5f6e9da2ab965d6839b1f4358131a1b
|\ \ \  Merge: f97613f 8e55cd8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jul 5 23:55:20 2011 -0700
| | | | 
| | | |     Merge pull request #171 from frx/streamingfile
| | | |     
| | | |     Removed unnecessary macro definitions of the get_vector functions
| | | |     
| * | | commit 8e55cd86b64bee9b6ac64f4fdf94577d77f6c43a
|/ / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |   Date:   Wed Jul 6 02:38:11 2011 +0530
| | |   
| | |       Removed unnecessary macro definitions of the get_vector functions in StreamingFileFrom*Features.
| | |   
| | |   M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |   M	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | |   M	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
* | | commit f97613f72a8527391fc23879169b43ce7643a0e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 6 00:31:53 2011 +0400
| | | 
| | |     Removed junk at arpack wrapper
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | |    
* | | commit 0440c9058310fd1f7acf7220ae0dd7d54e917bb1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jul 6 00:30:20 2011 +0400
| | | 
| | |     Arpack wrapper improvements
| | | 
| | | M	src/libshogun/lib/arpack.cpp
| | | M	src/libshogun/lib/arpack.h
| | |    
* | | commit fbbd60b81534c502755a9a8767604ccc88a4ca3e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jul 5 22:57:59 2011 +0400
| | | 
| | |     Get this shit to compile
| | | 
| | | M	src/modular/Classifier.i
| | | M	src/modular/Regression.i
| | |    
* | | commit b4af03be91c1b34448153e09802038eb7815362a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jul 5 16:20:09 2011 +0200
| | | 
| | |     add missing %import to fix compilation issue of kernel_io_modular
| | | 
| | | M	src/modular/Kernel.i
| | |      
* | |   commit 41a8c9911c36ba5db813cd6ccc6a766889bdc3a4
|\ \ \  Merge: 93ea9dd fe784a5
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jul 5 07:04:49 2011 -0700
| | |   
| | |       Merge pull request #170 from sploving/master
| | |       
| | |       add some kernel example for java_modular
| | |    
| * | commit fe784a59fcc8491a33d5d443757dc662b94081ee
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jul 5 21:11:58 2011 +0800
| | | 
| | |     add some kernel exmaples for java_modular
| | | 
| | | A	examples/undocumented/java_modular/kernel_gaussian_modular.java
| | | A	examples/undocumented/java_modular/kernel_gaussian_shift_modular.java
| | | A	examples/undocumented/java_modular/kernel_inversemultiquadric_modular.java
| | | A	examples/undocumented/java_modular/kernel_io_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_modular.java
| | | A	examples/undocumented/java_modular/kernel_linear_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_local_alignment_string_modular.java
| | | A	examples/undocumented/java_modular/kernel_locality_improved_string_modular.java
| | |    
| | * commit ce84d3f2939f60dda99c5cf647a11f4b737bc198
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 7 10:40:00 2011 +0200
| | | 
| | |     more work on example
| | | 
| | | M	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | |    
| | * commit d350274eb981dcb8b9cbc268b1ba93490a4ec4c9
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jul 7 10:39:40 2011 +0200
| | | 
| | |     made CParameterCombination inherit from CSGObject
| | |     added init method and parameter registration
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit 6d1bddc8fe4dbb874dfccc62fdac254485257a20
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:24:24 2011 +0200
| | | 
| | |     made ParameterCombination an SGObject by renaming it to CParameterCombination
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/GridSearchModelSelection.h
| | | M	src/libshogun/modelselection/ModelSelection.h
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit bee986180590fc7f2d19f34919ddd7953b47a6d7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:11:40 2011 +0200
| | | 
| | |     -ModelSelectionParameters::get_combinations() now returns a new DynArray instance instead of filling a provided one.
| | |     -applied all necessary memory management changes
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 6b5355644e3b1388515847f70fe135342b006b36
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 16:11:28 2011 +0200
| | | 
| | |     -ModelSelectionParameters::get_combinations() now returns a new DynArray instance instead of filling a provided one.
| | |     -applied all necessary memory management changes
| | | 
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit d149c6908a202adf9a218dbcbcb2763e3f41372a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:39:18 2011 +0200
| | | 
| | |     applied method rename
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 439dcf294971f23a899efea485ee05054abf6624
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:48 2011 +0200
| | | 
| | |     added type for ParameterCombination DynArray
| | | 
| | | M	src/modular/Modelselection.i
| | |    
| | * commit 2928183cf3fbc928852300509d161766433ba237
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:31 2011 +0200
| | | 
| | |     -renamed print method to print_tree
| | | 
| | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | M	src/libshogun/modelselection/ParameterCombination.h
| | |    
| | * commit e6d2e4f357a0f8976958cd0e54118a8cb0c57d95
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jul 6 14:38:18 2011 +0200
| | | 
| | |     -changed destroy method to unref_child method
| | |     -nodes now SG_REF their children
| | |     -renamed print method to print_tree
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit cab1084acb4845ab68501a85763790aad4361db8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jul 5 17:35:41 2011 +0200
| | | 
| | |     first example for model selection in python_modular
| | | 
| | | A	examples/undocumented/python_modular/modelselection_parameter_tree_modular.py
| | |    
| | * commit 8fdbde06e9ba5b912f989f08d48bf234a9ed9877
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Tue Jul 5 17:33:50 2011 +0200
| |   
| |       initial work on python_modular interface for model selection
| |   
| |   A	src/modular/Modelselection.doxy
| |   A	src/modular/Modelselection.i
| |   A	src/modular/Modelselection_includes.i
| |   
* | commit 93ea9dded11a377bd6a15600447d4721431d6cc6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 5 08:43:45 2011 +0200
| | 
| |     Fix compilation error in classic mds.
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| |     
* |   commit a5bffe36e859ff60a7dfabae64cfa4317246c560
|\ \  Merge: ccfa941 8eec45c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jul 4 23:37:57 2011 -0700
| | | 
| | |     Merge pull request #169 from frx/streamingfile
| | |     
| | |     StreamingFile structure changes, updated for String and SparseFeatures
| | |    
| * | commit 8eec45cb15a85ae0b0a23bd4c9ccdd8c26d5bee8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jul 5 03:39:33 2011 +0530
| | | 
| | |     Implemented overloading in streaming sparse and string files. Removed the get_vector template declaration in them.
| | | 
| | | M	src/libshogun/lib/StreamingFile.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | | D	src/libshogun/lib/StreamingFileFromSparseFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | | D	src/libshogun/lib/StreamingFileFromStringFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
| * | commit 8e5ff1c027de0eedba7c04c7cc5cca232198b6d8
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 4 04:56:03 2011 +0530
| | | 
| | |     Changed structure of StreamingFile.
| | |     StreamingFile now only uses overloaded get_vector, get_vector_and_label, get_sparse_vector, etc. instead of explicitly labelled get_bool_vector, get_real_vector, etc.
| | |     Changes made in accordance with this made for all the derived classes, which are templated and implement overloaded get_vector/get_sparse_vector etc functions depending on class type parameter.
| | |     Fixed the finalize_example and do_delete behaviour in the parser.
| | | 
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | M	src/libshogun/features/StreamingStringFeatures.h
| | | M	src/libshogun/lib/InputParser.h
| | | M	src/libshogun/lib/ParseBuffer.h
| | | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | | M	src/libshogun/lib/StreamingAsciiFile.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit fa2600111784a872bd4cc735a18a281ac5ba594d
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jul 4 02:21:22 2011 +0530
| | | 
| | |     StreamingFile no longer derives from CFile. Unnecessary write/matrix functions removed.
| | | 
| | | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | | M	src/libshogun/lib/StreamingAsciiFile.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | | M	src/libshogun/lib/StreamingFile.h
| | |    
| * | commit 7df5bebe141ba7822e4f495fd2a4cb730dcc5873
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 23:54:36 2011 +0530
| | | 
| | |     Made the StreamingFileFromSimpleFeatures class templated so that get_vector<T>, get_vector_and_label<T>, get_sparse_vector<T>, etc.
| | |     have to be used for vector reading. The .cpp file had to be appended to the header.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | M	src/libshogun/features/StreamingStringFeatures.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | | M	src/libshogun/lib/StreamingFile.h
| | | D	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit e427285e36fc7ef5385ab7dd70d1d0c6aa7da445
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 18:44:26 2011 +0530
| | | 
| | |     dense_dot_range function for StreamingDotFeatures. Testing still remains.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | |    
| * | commit 239606858dcc3db9011c78e900722b187452760b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jul 3 03:01:03 2011 +0530
| | | 
| | |     Converted dense_dot, add_to_dense_vec to work with regular vectors rather than SGVectors.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/features/StreamingSparseFeatures.h
| | |    
| * | commit 12bca9c2e2c22c8ae3441dd7bad7c86d5fa19e94
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 20:33:08 2011 +0530
| | | 
| | |     Added seekable property, and reset_stream() to StreamingFeatures. Moved the StreamingFile object up to the base class StreamingFeatures.
| | | 
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | |    
| * | commit 73bf1ca089709a6fff146259325df504fef65703
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 01:02:44 2011 +0530
| | | 
| | |     git add on StreamingFileFromStringFeatures.*
| | | 
| | | A	src/libshogun/lib/StreamingFileFromStringFeatures.cpp
| | | A	src/libshogun/lib/StreamingFileFromStringFeatures.h
| | |    
| * | commit d70e504332842d21b269e25b5d34b9cd3b034027
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sat Jul 2 00:59:10 2011 +0530
| | | 
| | |     StreamingSimpleFeatures can now directly be initialized with a SimpleFeatures object instead of explicitly creating a StreamingFileFromSimpleFeatures first.
| | |     Added label support to the example.
| | | 
| | | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | | M	src/libshogun/features/StreamingDotFeatures.h
| | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | |    
| * | commit d519f491b15eec050287996f178833323d581add
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jul 1 23:41:56 2011 +0530
| | | 
| | |     Added labels support for StreamingFileFromFeatures.
| | |     Made the corresponding versions for StringFeatures and SparseFeatures.
| | | 
| | | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromFeatures.h
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | | A	src/libshogun/lib/StreamingFileFromSparseFeatures.cpp
| | | A	src/libshogun/lib/StreamingFileFromSparseFeatures.h
| | |    
* | | commit ccfa941b00dd069ea10e0b7c06c000914a44d37f
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Tue Jul 5 01:26:49 2011 +0400
| |   
| |       Fixed segfault at ClassicMDS eigenvalues vector
| |   
| |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| |     
* |   commit 414534f1e9b0f48865b7dd9ef415310fa751ee67
|\ \  Merge: e2c834b 87f2965
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jul 4 08:56:06 2011 -0700
| |   
| |       Merge pull request #168 from sploving/master
| |       
| |       add some kernel example for java_modular
| |   
| * commit 87f29650a243277c9ad145116cb110b7fc882b32
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Mon Jul 4 23:46:27 2011 +0800
| | 
| |     add some kernel examples for java_modular
| | 
| | A	examples/undocumented/java_modular/kernel_log_modular.java
| | A	examples/undocumented/java_modular/kernel_match_word_string_modular.java
| | A	examples/undocumented/java_modular/kernel_multiquadric_modular.java
| | A	examples/undocumented/java_modular/kernel_oligo_string_modular.java
| |   
* | commit e2c834b85a2a5f098dc4cc4534f53cf1011d52b5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 4 09:13:04 2011 +0200
| | 
| |     Follow Shashwat Lal Das nice suggestion and use overloading for
| |     get_vector and related functions.
| | 
| | M	src/cmdline/CmdLineInterface.cpp
| | M	src/cmdline/CmdLineInterface.h
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/SimpleFeatures.h
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/lib/AsciiFile.cpp
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/BinaryFile.cpp
| | M	src/libshogun/lib/BinaryFile.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | M	src/libshogun/lib/HDF5File.cpp
| | M	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| | M	src/matlab/MatlabInterface.cpp
| | M	src/matlab/MatlabInterface.h
| | M	src/octave/OctaveInterface.cpp
| | M	src/octave/OctaveInterface.h
| | M	src/python/PythonInterface.cpp
| | M	src/python/PythonInterface.h
| | M	src/r/RInterface.cpp
| | M	src/r/RInterface.h
| |     
* |   commit aa41ac57c20b5ecb3bd8fb224fcdea550f5a4aa9
|\ \  Merge: bf05670 0200985
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Sun Jul 3 22:52:57 2011 -0700
| |   
| |       Merge pull request #167 from sploving/master
| |       
| |       add some java kernel examples
| |   
| * commit 0200985df1d6112d4844169aab046445a0e1ba70
| | Author: Baozeng Ding <sploving1@gmail.com>
| | Date:   Sun Jul 3 22:30:31 2011 +0800
| | 
| |     add some java kernel examples
| | 
| | A	examples/undocumented/java_modular/kernel_poly_modular.java
| | A	examples/undocumented/java_modular/kernel_power_modular.java
| | A	examples/undocumented/java_modular/kernel_rationalquadratic_modular.java
| | A	examples/undocumented/java_modular/kernel_sigmoid_modular.java
| | A	examples/undocumented/java_modular/kernel_simple_locality_improved_string_modular.java
| | A	examples/undocumented/java_modular/kernel_spherical_modular.java
| | A	examples/undocumented/java_modular/kernel_tstudent_modular.java
| | A	examples/undocumented/java_modular/kernel_wave_modular.java
| | A	examples/undocumented/java_modular/kernel_wavelet_modular.java
| | A	examples/undocumented/java_modular/kernel_weighted_comm_word_string_modular.java
| |   
* | commit bf05670b8cd712923010aabe5f247931109a2b7c
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Jul 4 01:09:21 2011 +0400
| | 
| |     ARPACK-related fixes for ClassicMDS
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| |   
* | commit abf5a9de256061b477fff57df03835852b939864
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon Jul 4 01:08:14 2011 +0400
|   
|       Fixes and improvements for arpack wrapper
|   
|   M	src/libshogun/lib/arpack.cpp
|   M	src/libshogun/lib/arpack.h
|    
*   commit 69e129191ffe3ebe11646d64643d54885772abab
|\  Merge: 9d54d81 df56be0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 2 11:47:09 2011 -0700
| | 
| |     Merge pull request #165 from alesis/gmm
| |     
| |     Added set_* for GMM and cluster methods
| |   
| * commit df56be006714eea59924737e46132293a3f8684d
|/  Author: Alesis Novik <alesisnov@gmail.com>
|   Date:   Sat Jul 2 18:21:09 2011 +0100
|   
|       Added set_* for GMM
|   
|   M	src/libshogun/clustering/GMM.cpp
|   M	src/libshogun/clustering/GMM.h
|    
*   commit 9d54d81a3771fe4ada120e41055ee06ad5e010e6
|\  Merge: 7a576ae b489910
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Jul 2 04:17:09 2011 -0700
| | 
| |     Merge pull request #164 from alesis/gmm
| |     
| |     GMM overhaul with SG*
| |   
| * commit b4899108a99dac3b308833d25826ae3400b936af
| | Author: Alesis Novik <alesisnov@gmail.com>
| | Date:   Sat Jul 2 00:37:11 2011 +0100
| | 
| |     Bug fixes for GMM
| | 
| | M	src/libshogun/clustering/GMM.cpp
| |   
| * commit 45938db32d958280984737f9b056d8b960d2d43b
|/  Author: Alesis Novik <alesisnov@gmail.com>
|   Date:   Fri Jul 1 22:15:22 2011 +0100
|   
|       Migrating to SG*
|   
|   M	src/libshogun/clustering/GMM.cpp
|   M	src/libshogun/clustering/GMM.h
|   M	src/libshogun/distributions/Gaussian.cpp
|   M	src/libshogun/distributions/Gaussian.h
|    
*   commit 7a576ae06db642dc0e21ec3a9aa3d392d2e99598
|\  Merge: b8bcb1c a879603
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 22:55:49 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit a8796035423fa3fe1ee78966ccab958346453fff
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Jul 2 00:25:07 2011 +0400
| | 
| |     ClassicMDS: Added warning for inconsistent embeddings, doc fixes
| | 
| | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | M	src/libshogun/preprocessor/ClassicMDS.h
| |   
| * commit ffa80d7fb0c45b83baa03b67f8553c94a68fdc31
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 1 23:48:13 2011 +0400
| | 
| |     Fixed doc and some more at gaussian naive bayes
| | 
| | M	src/libshogun/classifier/GaussianNaiveBayes.h
| |   
* | commit b8bcb1c45f0aca535a8a72f9e66cc8e321e72da0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 22:55:15 2011 +0200
| | 
| |     get all octave_modular examples back to work
| | 
| | M	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| | M	examples/undocumented/octave_modular/distance_canberraword_modular.m
| | M	examples/undocumented/octave_modular/distance_hammingword_modular.m
| | M	examples/undocumented/octave_modular/distance_manhattenword_modular.m
| | M	examples/undocumented/octave_modular/distribution_histogram_modular.m
| | M	examples/undocumented/octave_modular/distribution_hmm_modular.m
| | M	examples/undocumented/octave_modular/distribution_linearhmm_modular.m
| | M	examples/undocumented/octave_modular/kernel_comm_ulong_string_modular.m
| | M	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| | M	examples/undocumented/octave_modular/kernel_linear_byte_modular.m
| | M	examples/undocumented/octave_modular/kernel_linear_word_modular.m
| | M	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
| | M	examples/undocumented/octave_modular/kernel_poly_match_word_string.m
| | M	examples/undocumented/octave_modular/kernel_sparsegaussian_modular.m
| | M	examples/undocumented/octave_modular/kernel_sparselinear_modular.m
| | M	examples/undocumented/octave_modular/kernel_sparsepoly_modular.m
| | M	examples/undocumented/octave_modular/kernel_top_modular.m
| | M	examples/undocumented/octave_modular/kernel_weighted_comm_word_string_modular.m
| | M	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| | M	examples/undocumented/octave_modular/preproc_normone_modular.m
| | M	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| | M	examples/undocumented/octave_modular/tools/load_matrix.m
| | M	src/libshogun/kernel/PolyKernel.cpp
| | M	src/libshogun/kernel/PolyKernel.h
| | M	src/octave_modular/swig_typemaps.i
| |   
* | commit 9be4b76452b747a7253d7b63c7993682e4b31d25
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 21:45:49 2011 +0200
| | 
| |     remove SG_NOTIMPLEMENTED
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
* | commit 99686782a794105243d3bb7d9b6d3ca0b32a4981
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 21:45:13 2011 +0200
| | 
| |     add make install to java_modular
| | 
| | M	src/Makefile.template
| |   
* | commit 489c880a2e2bbc737a46ce5fc4ae16dd83bb17d2
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Fri Jul 1 21:44:49 2011 +0200
|   
|       disable nested struct swig warning
|   
|   M	src/configure
|  
* commit de52e68d28aec040b16627b6ece89bb96db47a33
| Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| Date:   Fri Jul 1 15:01:44 2011 +0200
| 
|     fixed a segfault bug as pointed out by Jonas Behr
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 3725079561c64163e622906614dd8a306624c260
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 15:02:19 2011 +0400
| 
|     Codestyle fixes for LocallyLinearEmbedding
| 
| M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
|  
* commit 473aefb8324687fd766e296dc7ee448f357e996d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 1 11:55:31 2011 +0200
| 
|     require new version of data
| 
| M	data
|    
*   commit 38218704dc8d88a777970756288d6ae76556180c
|\  Merge: 23bb602 490545f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 1 02:54:17 2011 -0700
| | 
| |     Merge pull request #161 from frx/streaming_1
| |     
| |     Made some changes for the delete[] to be called optionally after release
| |   
| * commit 490545faf17e5f958f5a06839dab57f1064c543b
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:58:54 2011 +0530
| | 
| |     Made some changes for the delete[] to be called optionally after release of example from the parser.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| |     
* |   commit 23bb602ec186ef8bb92f732681cd9626ff935e36
|\ \  Merge: dd517a0 0bfb38f
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Thu Jun 30 16:15:31 2011 -0700
| |   
| |       Merge pull request #160 from frx/streaming_1
| |       
| |       Streaming*File changes as per other pull request
| |   
| * commit 0bfb38fe2d40fbec0ad65550c45ed6645fdb7557
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:37:58 2011 +0530
| | 
| |     Fixed the example to use SG_SPRINT instead of SG_PRINT
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |     
| *   commit 1265221eadc27c75069fb486a9639539e7ad9032
| |\  Merge: 355bcd0 dd517a0
| |/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|/|   Date:   Fri Jul 1 04:26:10 2011 +0530
| |   
| |       Merge branch 'master' of https://github.com/shogun-toolbox/shogun into streaming_1
| |   
* | commit dd517a0447ede38cfe442b8f9bd956c4a14ea691
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Fri Jul 1 02:50:01 2011 +0400
| | 
| |     Fix for arpack.cpp
| | 
| | M	src/libshogun/lib/arpack.cpp
| |   
| * commit 355bcd09f18aae229de8707a6bbb2726b284a186
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:13:49 2011 +0530
| | 
| |     SG_ERROR replaces some left out SG_INFOs
| | 
| | M	src/libshogun/lib/StreamingFile.cpp
| |   
| * commit a9743bc777e0cc887e49d3e23121ff5b4db36562
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:11:58 2011 +0530
| | 
| |     Replace FP_DOT with FP_STREAMING_DOT for StreamingDotFeatures
| | 
| | M	src/libshogun/features/FeatureTypes.h
| | M	src/libshogun/features/StreamingDotFeatures.h
| |   
| * commit 8547617350cb6cfc67d68ade0723ed25886539d3
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 04:05:09 2011 +0530
| | 
| |     SG_PRINTF = SG_PRINT
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
| * commit 116fc2bfdbe9e09a87bb194ccb61dc4dcd139b7d
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jul 1 03:56:15 2011 +0530
| | 
| |     Changes as per pull request comments: void removal, SG_ERROR, SG_PRINTF etc
| | 
| | M	examples/undocumented/libshogun/streaming_from_simple.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromFeatures.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit 59c6e82d9ef000a73e90d47722af75db921a8f2a
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 23:36:50 2011 +0530
| | 
| |     Added FP_DOT property to StreamingDotFeatures
| | 
| | M	src/libshogun/features/StreamingDotFeatures.h
| |   
| * commit d21f541b8837b8cd4a9d8886cde4c8a53dc35fd4
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 20:55:19 2011 +0530
| | 
| |     Added an example to demonstrate use of SimpleFeatures as StreamingFeatures input.
| | 
| | A	examples/undocumented/libshogun/streaming_from_simple.cpp
| |   
| * commit a0713bcf12fd552b787d34c804592f97724ab1a0
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 19:16:20 2011 +0530
| | 
| |     Small but essential changes -- fixed constructor of StreamingFileFromFeatures etc so that a minimal example now works.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingFileFromFeatures.cpp
| |   
| * commit b9b96bbbfb0eae1efdb2105a72cda8741b571fe1
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 19:00:58 2011 +0530
| | 
| |     Changes to previous commit so that compilation is successful. Moving around of functions a bit; nothing changes in the actual technique, however.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingAsciiFile.cpp
| | M	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | M	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit 163498b56d6bee4f685b9412c6d84250ca1fcd1f
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 28 18:09:40 2011 +0530
| | 
| |     First implementation of StreamingFileFromFeatures, StreamingAsciiFile and StreamingFileFromSimpleFeatures.
| | 
| | A	src/libshogun/lib/StreamingAsciiFile.cpp
| | A	src/libshogun/lib/StreamingAsciiFile.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| | A	src/libshogun/lib/StreamingFileFromFeatures.cpp
| | A	src/libshogun/lib/StreamingFileFromFeatures.h
| | A	src/libshogun/lib/StreamingFileFromSimpleFeatures.cpp
| | A	src/libshogun/lib/StreamingFileFromSimpleFeatures.h
| |   
| * commit a2506bc9076b0a3420127bfc226a3a88c8e9bc8c
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 27 21:41:29 2011 +0530
| | 
| |     Added functions in StreamingSimpleFeatures to enable getting examples from a SimpleFeatures object.
| |     Added constructor for StreamingFile which takes a CFeatures pointer as argument.
| |     
| |     This is to be used along with obtain_from_simplefeatures() to get this behaviour to work.
| | 
| | M	src/libshogun/features/StreamingSimpleFeatures.h
| | M	src/libshogun/lib/StreamingFile.h
| |   
| * commit a0c3008fefd32555e7e556ae44df7bd27929326c
|/  Author: Shashwat Lal Das <fraggerx@gmail.com>
|   Date:   Mon Jun 27 21:13:35 2011 +0530
|   
|       Modify StreamingFile to take input from a SimpleFeatures object.
|   
|   M	src/libshogun/lib/StreamingFile.cpp
|   M	src/libshogun/lib/StreamingFile.h
|  
* commit 3e88af5b5a35a85e705e923773af70d53937b59d
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 02:08:07 2011 +0400
| 
|     Fix for swissroll graphical example
| 
| M	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit d79f50b86bee0af3fa1d2cd6163b9b1ce436c983
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 01:55:42 2011 +0400
| 
|     Added swissroll python_modular graphical example
| 
| A	examples/undocumented/python_modular/graphical/swissroll.py
|  
* commit 35c6ef6eacf173a065089ce19d3b6c0a83fa1c0c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Jul 1 01:36:09 2011 +0400
| 
|     Fix uppercase naming of MDSs
| 
| M	src/libshogun/preprocessor/ClassicMDS.h
| M	src/libshogun/preprocessor/LandmarkMDS.h
|  
* commit b54d7be61c89c20a4e46167eb38e398a26de7ad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 30 22:20:30 2011 +0200
| 
|     Fix typo - void static -> should be static void
| 
| M	src/libshogun/features/SparseFeatures.h
|    
*   commit 884b32bca0a9a2f3194be44a2b8ea2682b56d2c0
|\  Merge: 523a175 3e09510
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 30 12:52:06 2011 -0700
| | 
| |     Merge pull request #158 from karlnapf/master
| |     
| |     subset support for sparse features
| |   
| * commit 3e0951022c31f5afb2dc00350361426397bca3e5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:30:46 2011 +0200
| | 
| |     uncommented a line
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit 30f4b34dd5d2d4801fa1b4ac4de46f90df5f8b9b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:23:32 2011 +0200
| | 
| |     added comments
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 016e1ea3ea8d45ba6362d0db72928967201b20e9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:23:26 2011 +0200
| | 
| |     -added check for transpose method
| |     -added free_feature_vector calls
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit bb033438b550a6c85ea4795758734c4e29dd642b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:17:58 2011 +0200
| | 
| |     made constructor not to copy but to directly use input matrix
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit efb1d95d7a5ed146099de60ae57f6ae84e738dd8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:05:07 2011 +0200
| | 
| |     -added free_feature_vector method for SGVector
| |     -fixed a bug in get_transposed which ended in writting to non-allocated memory, also made the method more readable
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 6f8dd8a6ac4fd7044e2495bbfeb5440db6a01acc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 18:00:54 2011 +0200
| | 
| |     fixed forgotten initializer in copy constructor of SGVector
| | 
| | M	src/libshogun/lib/DataType.h
| |   
| * commit f8fdf76bd8fade90908cb78c8ba63b0dbd79416f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 17:23:21 2011 +0200
| | 
| |     make usage of free_sparse_feature_vector method
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 4ac8cc6512704538f5982f28e605ddd12fda5809
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:45:44 2011 +0200
| | 
| |     -simplification
| |     -transpose check for subset
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit 5750e1c078cebb219317938a08a411f513f99b00
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:41:35 2011 +0200
| | 
| |     fixed a segfault
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit f58641e1c02c27d524988cd0c092ecb06017b9b3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:36:51 2011 +0200
| | 
| |     copy paste error fixed
| | 
| | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| |   
| * commit a54fd2ab7d5c74f3b37e142b110ca328fe59a0bc
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 30 16:00:30 2011 +0200
| | 
| |     added sparse features subset example
| | 
| | M	examples/undocumented/libshogun/Makefile
| |     
| *   commit f964a5bbca444e5c3e57c8acd92a58aaf69b238a
| |\  Merge: f87a94e 715f2a2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 15:57:13 2011 +0200
| | | 
| | |     Merge remote-tracking branch 'upstream/master'
| | |    
| * | commit f87a94e8cc962d88732b7a17d01000058189f212
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 15:56:14 2011 +0200
| | | 
| | |     finished example for sparse features subset
| | | 
| | | M	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | |      
| * |   commit 48b7e7b097776af5a85f485848dd11df19f51162
| |\ \  Merge: 69b8071 ded723b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Jun 30 15:42:26 2011 +0200
| | | | 
| | | |     Merge branch 'master' into sparefeaturessubset
| | | |       
| * | |   commit 69b80717ce949889576be5c50ccf720357a0a8aa
| |\ \ \  Merge: 5f6911d 27b9479
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:15:18 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' into sparefeaturessubset
| | | | |      
| * | | | commit 5f6911d435838ecc70da5e2a0101c795170191ec
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:01:36 2011 +0200
| | | | | 
| | | | |     added example/test for sparse features subset
| | | | | 
| | | | | A	examples/undocumented/libshogun/features_subset_sparse_features.cpp
| | | | |      
| * | | | commit d01288e18dce2341efd203251e17282da2313698
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Jun 30 14:00:34 2011 +0200
| | | | | 
| | | | |     more work on subset for sparse features
| | | | | 
| | | | | M	src/libshogun/features/SparseFeatures.h
| | | | |        
| * | | |   commit b688d5827142e920467280df1a65d7e3f634d9fe
| |\ \ \ \  Merge: a5985fd 7c7e3de
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu Jun 30 12:20:51 2011 +0200
| | | | | | 
| | | | | |     Merge remote-tracking branch 'upstream/master' into sparefeaturessubset
| | | | | |       
| * | | | | commit a5985fdc3f728b0f71d9a3143dbb31aab85a07c9
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed Jun 29 15:25:31 2011 +0200
| | | | | | 
| | | | | |     initial work on subset support for this class
| | | | | | 
| | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | |         
* | | | | |   commit 523a17502532e596898a70512acf96631d9c691a
|\ \ \ \ \ \  Merge: 964dcbd c3fdb27
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Thu Jun 30 22:51:49 2011 +0400
| | | | | | | 
| | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| * | | | | | commit c3fdb279cc0a6670c6e56812b218344783222e95
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Thu Jun 30 23:54:00 2011 +0800
| | | | | | | 
| | | | | | |     add some examples
| | | | | | | 
| | | | | | | A	examples/undocumented/java_modular/kernel_comm_ulong_string_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_comm_word_string_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_distantsegments_modular.java
| | | | | | | A	examples/undocumented/java_modular/kernel_fixed_degree_string_modular.java
| | | | | | |        
| * | | | | | commit 6249e22b977aba289ca0939c561bc9d2299a6ee3
| | |_|_|_|/  Author: Baozeng Ding <sploving1@gmail.com>
| |/| | | |   Date:   Thu Jun 30 23:18:21 2011 +0800
| | | | | |   
| | | | | |       add distance_hammingword_modular and distance_manhattenword_modular example
| | | | | |   
| | | | | |   A	examples/undocumented/java_modular/distance_hammingword_modular.java
| | | | | |   A	examples/undocumented/java_modular/distance_manhattenword_modular.java
| | | | | |       
* | | | | | commit 964dcbd5cb56e515fe82b2a312964a12a07d2ede
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Thu Jun 30 22:13:30 2011 +0400
| | | | | | 
| | | | | |     Changed eigenpairs order in ClassicMDS with ARPACK
| | | | | | 
| | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | |       
* | | | | | commit 3d6a5b560fcc06432be49dfb077e8f05c53054b8
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Thu Jun 30 21:55:53 2011 +0400
| | | | | | 
| | | | | |     Added ARPACK support for ClassicMDS
| | | | | | 
| | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | |       
* | | | | | commit e097863d1a8bcfa0861529e017beed9af88dd642
|/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Thu Jun 30 21:55:31 2011 +0400
| | | | |   
| | | | |       Added wrapper for ARPACK
| | | | |   
| | | | |   A	src/libshogun/lib/arpack.cpp
| | | | |   A	src/libshogun/lib/arpack.h
| | | | |        
* | | | |   commit 715f2a29b79ca39351be7ea6239fef33a36e20a3
|\ \ \ \ \  Merge: 336e167 ded723b
| | |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Thu Jun 30 17:44:06 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | |      
| * | | | commit ded723b7717137ddbba624c5a931ad8c0fb02c73
| | |_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Thu Jun 30 15:41:19 2011 +0200
| | | |   
| | | |       LibLinear now does now not SG_REF labels in appy anymore
| | | |       (in fashion with other machines)
| | | |   
| | | |   M	src/libshogun/evaluation/CrossValidation.cpp
| | | |   M	src/libshogun/machine/LinearMachine.cpp
| | | |     
* | | | commit 336e167dfc479d61e69273d988961f2017efad71
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Thu Jun 30 17:19:49 2011 +0400
| | |   
| | |       Fix for auROC and auPRC
| | |   
| | |   M	src/libshogun/evaluation/PRCEvaluation.cpp
| | |   M	src/libshogun/evaluation/ROCEvaluation.cpp
| | |   M	src/libshogun/lib/Mathematics.h
| | |    
* | | commit 27b9479e2d35d47ad24badd3051a6fc20b609241
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Jun 30 14:12:18 2011 +0200
| | | 
| | |     added remove subset in obtain_from_char_features
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit d10eaf332799e24c9e45209ac224e520a52295b6
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Thu Jun 30 14:11:32 2011 +0200
| |   
| |       added subset support for obtain_from_char fixing sergey's fixme
| |   
| |   M	src/libshogun/features/StringFeatures.h
| |   
* | commit 7c7e3de5661e591a6d26d0fbdbae47cbf9e3645a
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jun 30 02:46:03 2011 +0400
| | 
| |     Fix for K-Isomap procedure
| | 
| | M	src/libshogun/preprocessor/Isomap.h
| |   
* | commit cc04bff4895f290acac3e492d925a8638e7425f6
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Thu Jun 30 00:47:38 2011 +0400
| | 
| |     Added FIXME and fixed StringFeatures compile bug
| | 
| | M	src/libshogun/features/StringFeatures.h
| |     
* |   commit b803c053f1a39d74b18bf3c4b1b7c10827acb7ca
|\ \  Merge: e5b3696 d634cf8
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 29 12:36:09 2011 -0700
| |   
| |       Merge pull request #154 from karlnapf/master
| |       
| |       bug in DynArray
| |   
| * commit d634cf87fd7c8dc83a11ce54101df26252996d06
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:14:06 2011 +0200
| | 
| |     added subset support for get_transposed
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit 642679605a89e259e04ce14b4b958c475b4138b3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:13:50 2011 +0200
| | 
| |     corrected a bug in get_transposed
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit e51d8ba960c6fbcc69c786e1004d1e8ebeb53204
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 15:04:57 2011 +0200
| | 
| |     applied forgotten index conversion
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |     
| *   commit 11dc433c774df05c7fbbb4940e29f0b109ed329c
| |\  Merge: 052e544 827f2b0
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 14:41:58 2011 +0200
| | | 
| | |     Merge remote-tracking branch 'upstream/master'
| | |    
| * | commit 052e544a4bca26e949b14c4089c62282b6efc9e2
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 14:41:36 2011 +0200
| | | 
| | |     added my name to copyright :)
| | | 
| | | M	src/libshogun/features/Features.cpp
| | | M	src/libshogun/features/Features.h
| | |    
| * | commit 6198fbe598d9a18be9c548d369468d8eb51feecd
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:07:19 2011 +0200
| | | 
| | |     -extended parameter range to have a larger search space
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| * | commit a896e14e4fbf645e56c35be8cdac637506ce48a3
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:06:06 2011 +0200
| | | 
| | |     introduced SG_CALLOC
| | | 
| | | M	src/libshogun/lib/memory.cpp
| | | M	src/libshogun/lib/memory.h
| | |    
| * | commit b8d99d6247dc7b8113a81ac1d8aa871a6e490d44
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 29 12:05:51 2011 +0200
| | | 
| | |     -added usage of SG_CALLOC
| | |     -fixed a bug that caused memory error for the = operator if one array had a different size than the other
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |      
* | |   commit e5b36960ff0e1454c8c86eb554c09f452b8962ba
|\ \ \  Merge: c47b8ec b2af56c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 29 12:26:57 2011 -0700
| | | | 
| | | |     Merge pull request #155 from sploving/master
| | | |     
| | | |     support SGVector for  UJMP
| | | |     
| * | | commit b2af56cb8a716de2699299af1312c2755a77c0a7
| | |/  Author: Baozeng Ding <sploving1@gmail.com>
| |/|   Date:   Wed Jun 29 21:56:14 2011 +0800
| | |   
| | |       support SGVector for UJMP
| | |   
| | |   M	src/java_modular/swig_typemaps.i
| | |    
* | | commit c47b8ec260b76d542470625969c34543cda4f19e
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Jun 29 22:48:06 2011 +0400
| |   
| |       Fixed includes at Isomap.h
| |   
| |   M	src/libshogun/preprocessor/Isomap.h
| |     
* |   commit 827f2b02d0937b2ea58216032c315aed475ad15d
|\ \  Merge: b8eca36 2b2f0f6
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 29 02:36:04 2011 -0700
| |   
| |       Merge pull request #153 from karlnapf/master
| |       
| |       new subset implementation
| |   
| * commit 2b2f0f6c9df5dff2dd9ca8aaf8e5e38c1649daaa
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:43:41 2011 +0200
| | 
| |     added SG_REF for methods that return a CSGObject
| | 
| | M	src/libshogun/features/Subset.cpp
| | M	src/libshogun/machine/LinearMachine.cpp
| |   
| * commit 09168363c2b3dbad0d681097f363725d14f1a94f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:43:20 2011 +0200
| | 
| |     applied interface change in CCrossValidation
| | 
| | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| |   
| * commit f157ef63218cfd484ff7c00d7a1966df3bca9292
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:42:33 2011 +0200
| | 
| |     removed getter for machine and added getter for machine's parameters
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 7af8b0039c2bd562095e44b05a587bef8d469c07
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:19:49 2011 +0200
| | 
| |     white space change
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 4a92f3876fba901c84bf6809be87b7c019b795ea
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:19:41 2011 +0200
| | 
| |     usage of SG_REF SG_UNREAF instead of delete
| | 
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/features/Features.cpp
| | M	src/libshogun/features/Labels.cpp
| |   
| * commit d7ac3f9252d3b3fa1bfe794866394db25c739c23
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 29 10:03:29 2011 +0200
| | 
| |     use SG_UNREF instead of delete
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |     
| *   commit e5345dd826cba35506bf1336b8bf0be165c2cb73
| |\  Merge: 46901ee b8eca36
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Wed Jun 29 10:01:29 2011 +0200
| |   
| |       Merge remote-tracking branch 'upstream/master'
| |     
* |   commit b8eca3647d5242e52ce14f7d38f7f4c9f340dc1a
|\ \  Merge: 427a6c6 398048d
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 29 03:57:01 2011 +0400
| | | 
| | |     Merge branch 'master' of ssh://shogun-toolbox.org/shogun
| | |     
| | |     Conflicts:
| | |     	src/modular/Preprocessor.i
| | |    
| * | commit 398048d2983452c57f9f532cb3bc4514fb467142
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 29 03:51:58 2011 +0400
| | | 
| | |     Various fixes and changes for Isomap
| | | 
| | | A	src/libshogun/preprocessor/ClassicIsomap.h
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | D	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | | M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
* | | commit 427a6c66fab0fb455e21d2b9a8253612ea3420ba
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Wed Jun 29 03:51:58 2011 +0400
| |   
| |       Various fixes and changes for Isomap
| |   
| |   A	src/libshogun/preprocessor/ClassicIsomap.h
| |   M	src/libshogun/preprocessor/ClassicMDS.h
| |   D	src/libshogun/preprocessor/Isomap.cpp
| |   M	src/libshogun/preprocessor/Isomap.h
| |   D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| |   M	src/libshogun/preprocessor/LandmarkIsomap.h
| |   M	src/libshogun/preprocessor/LandmarkMDS.cpp
| |   M	src/libshogun/preprocessor/LandmarkMDS.h
| |   M	src/libshogun/preprocessor/Preprocessor.h
| |   M	src/modular/Preprocessor.i
| |   M	src/modular/Preprocessor_includes.i
| |     
* |   commit 8fc6d4a201456af87e4f3879862da878cd5db156
|\ \  Merge: c9de9e3 d561923
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 28 13:59:19 2011 -0700
| | | 
| | |     Merge pull request #151 from sploving/master
| | |     
| | |     add ujmp types other than double/float
| | |    
| * | commit d561923de43d828664fc07652ed773f62bdbf909
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:29:55 2011 +0800
| | | 
| | |     add package import
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| * | commit 9baa20324a2a458368b200568d8025f1424febc2
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:25:37 2011 +0800
| | | 
| | |     add package import
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| * | commit 887d9eeafc8cfdf453f4ea6a29b3f26c23033d90
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Tue Jun 28 20:01:04 2011 +0800
| | | 
| | |     support ujmp types other than float/double
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | |    
| | * commit 46901eecca7957558de45f54bb9c3a6f056788f6
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:48:35 2011 +0200
| | | 
| | |     fixed segfault
| | | 
| | | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | |    
| | * commit 1e9f7760916590f1f1b1ee844a30e197a8d4091a
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:47:27 2011 +0200
| | | 
| | |     fixed segfault
| | | 
| | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | |    
| | * commit 674154d5782482a0b8a84ec36591483fc18498aa
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:43:02 2011 +0200
| | | 
| | |     use wrapper method to access subset_idx_conversion to avoid NULL-Pointer segfaults
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | |    
| | * commit 45a2ba98e7b0f4952f9b3160d560242cb4cec0d8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 28 21:27:20 2011 +0200
| | | 
| | |     fixed renamings of subset examples
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |      
| | *   commit 900696b2fe4ab90cc21b72cf58c056ab3e6e38dc
| | |\  Merge: b33e353 a829115
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 21:12:05 2011 +0200
| | | | 
| | | |     Merge branch 'master' into subsetfix
| | | |       
| | | *   commit a8291152389dcaf6e310c9a67720f3cb70f36f3f
| | | |\  Merge: 798234e 297c61b
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 19:42:02 2011 +0200
| | | | | 
| | | | |     Merge branch 'subsetfix'
| | | | |        
| | | * |   commit 798234e6d67c5647f6a8f2178136f58881c14f9f
| | | |\ \  Merge: ae62c82 c9de9e3
| |_|_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Tue Jun 28 19:41:56 2011 +0200
| | | | |   
| | | | |       Merge remote-tracking branch 'upstream/master'
| | | | |      
| | * | | commit b33e353dc5d053f475ef31eb7b81fd92b440cf0a
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 21:11:30 2011 +0200
| | | | | 
| | | | |     comment change
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
| | * | | commit 5d584bf9654335994be3ab7bd7a5c1b919db9305
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Tue Jun 28 21:10:34 2011 +0200
| | | | | 
| | | | |     applied new subset design
| | | | | 
| | | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | |      
| | * | | commit 25cb76047f75364cfff5366fe23bd8fb9a4af925
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Tue Jun 28 21:09:44 2011 +0200
| | | |   
| | | |       Revert "applied subset changes"
| | | |       
| | | |       This reverts commit 38bca7f5b9f5c022818ad67196f6d3fd1dedc915.
| | | |   
| | | |   M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | |   D	examples/undocumented/libshogun/features_subset_string_features.cpp
| | | |     
| | * | commit 297c61b245b741083cf201c4107be6c0539dfa61
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:41:19 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | |     
| | * | commit e285f57b3e629cb50533cd2f1eb2fd1e9fe14a11
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:41:06 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	examples/undocumented/libshogun/features_subset_labels.cpp
| | | |     
| | * | commit 38bca7f5b9f5c022818ad67196f6d3fd1dedc915
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:40:58 2011 +0200
| | | | 
| | | |     applied subset changes
| | | | 
| | | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | | | A	examples/undocumented/libshogun/features_subset_string_features.cpp
| | | |     
| | * | commit a26317632b90161c31d26c1add2179f187cb1e21
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:37:00 2011 +0200
| | | | 
| | | |     -applied subset design changes
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
| | * | commit 7cc44bca9fa0637aa3bbc36593f6972cae326f0b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:36:15 2011 +0200
| | | | 
| | | |     -subset check is now done via pointer, not via method
| | | |     -removed variable for number of subset vectors, method is used instead
| | | |     -removed setter/remover for subset
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | * | commit 3af162815b4bcba5adce50de2886e969a9283347
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:31:48 2011 +0200
| | | | 
| | | |     -removed additional variables for number of labels and use method instead
| | | |     -added subset implementations for certain methods
| | | |     -subset check is now don via pointer, not via method
| | | |     -added many comments whether subset is supported
| | | |     -removed old wrapper methods and stick to new subset design
| | | | 
| | | | M	src/libshogun/features/Labels.cpp
| | | | M	src/libshogun/features/Labels.h
| | | |     
| | * | commit 07a17e08c43f45817e8c7fbc405bf6afceb6991a
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:29:32 2011 +0200
| | | | 
| | | |     -removed wrapper methods and added setter and remover for subset
| | | |     -added index conversion method
| | | |     -implemented a post method that is called after a subset change
| | | |     -added some comments
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | |     
| | * | commit a5734de30ad5e91d63a6757ada91707e44079041
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:28:14 2011 +0200
| | | | 
| | | |     -added duplicate method
| | | |     -remoed setter and getter for index vector
| | | |     -added init method to register params
| | | | 
| | | | M	src/libshogun/features/Subset.cpp
| | | |     
| | * | commit ae5a5cd30984cae55f7b3e22ee2541a6838524d1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Tue Jun 28 19:27:30 2011 +0200
| | | | 
| | | |     -made index vector const
| | | |     -renamed index vector
| | | |     -added method to get size of subsett
| | | |     -removed getter for index vector
| | | |     -removed remove_subset method
| | | | 
| | | | M	src/libshogun/features/Subset.h
| | | |       
| | * |   commit 3fb107026aa78538876295dfd3ee096cae1e4e0f
| | |\ \  Merge: bbe82c8 c9de9e3
| |_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Tue Jun 28 19:13:25 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master' into subsetfix
| | | |     
* | | | commit c9de9e3879cd79d1cdfa9f2d93b878c21284b747
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 16:14:25 2011 +0400
| | | | 
| | | |     Fix for dimensionality check at ClassicMDS
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | |       
| | * |   commit bbe82c846080683343f3f5baa39a7f9c2a8673a7
| | |\ \  Merge: f7727ac 70286b3
| |_|/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Tue Jun 28 13:11:29 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master' into subsetfix
| | | |       
* | | |   commit 70286b37aa0f39e9904166639ae282818078a50c
|\ \ \ \  Merge: 96d091c 219c545
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Tue Jun 28 03:25:26 2011 -0700
| | | |   
| | | |       Merge pull request #150 from sploving/master
| | | |       
| | | |       support ujmp dense matrix
| | | |     
| * | | commit 219c54598fabc789444a5c8feb78d33f7f6670c6
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Tue Jun 28 17:54:46 2011 +0800
| | | | 
| | | |     support ujmp dense matrix
| | | | 
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
* | | | commit 96d091cecf2a3ca25c0d64011c0371bb8f6d9c93
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jun 28 12:24:18 2011 +0200
| | |   
| | |       fix compile error w/ java_modular
| | |   
| | |   M	data
| | |   M	src/modular/Distance.i
| | |   M	src/modular/Features.i
| | |   M	src/modular/Kernel.i
| | |   M	src/modular/Preprocessor.i
| | |      
* | |   commit a42094ce54bfc0150c3f6f1737f1cbd623e27306
|\ \ \  Merge: 1114044 bd1e65e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 27 13:14:12 2011 -0700
| | | | 
| | | |     Merge pull request #139 from karlnapf/master
| | | |     
| | | |     first working version of subset support for SimpleFeatures
| | | |     
* | | | commit 1114044db179ad7f5cc10e0439999c10818efc3e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 00:10:10 2011 +0400
| | | | 
| | | |     Restore LandmarkIsomap with not implemented tags
| | | | 
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.h
| | | |     
* | | | commit 596755ef69525c19bbb6362584be53cb3b9f831d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Tue Jun 28 00:07:30 2011 +0400
| | | | 
| | | |     Temporarly remove LandmarkIsomap
| | | | 
| | | | D	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | D	src/libshogun/preprocessor/LandmarkIsomap.h
| | | |       
| | * |   commit f7727ac01ecdf50b1c2d3e7fd40a5a99e4a438f5
| | |\ \  Merge: 20ee95e ae62c82
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Mon Jun 27 10:08:48 2011 +0200
| | | |   
| | | |       Merge branch 'master' into subsetfix
| | | |       
| | | *   commit ae62c82cd6b320ef5fa5a5f9b2b497e398b97b34
| | | |\  Merge: bd1e65e 59ffa87
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| /   Date:   Mon Jun 27 09:35:06 2011 +0200
| |_|/    
|/| |         Merge remote-tracking branch 'upstream/master'
| | |    
* | | commit 59ffa87b8ce893616481fec49f4144200ff56687
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jun 26 22:28:41 2011 +0200
| | | 
| | |     add arpack configure detection
| | | 
| | | M	src/configure
| | |      
* | |   commit 1e8832709dbbe3a447a2367a4f43c4eca317c1e6
|\ \ \  Merge: 03cbe1e e661720
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 26 11:44:37 2011 -0700
| | | | 
| | | |     Merge pull request #148 from frx/streaming
| | | |     
| | | |     Implemented a basic StreamingSparseFeatures. Added read functions to StreamingFile.
| | | |     
| * | | commit e661720eadbfed396e4ea454787950d0525493a8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jun 26 20:36:51 2011 +0530
| | | | 
| | | |     Added doc to StreamingStringFeatures. Minor modification to doc in StreamingSparseFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingSparseFeatures.h
| | | | M	src/libshogun/features/StreamingStringFeatures.h
| | | |     
| * | | commit c90f350209556286ed346481b7bd276ed82a2f58
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Sun Jun 26 20:18:37 2011 +0530
| | | | 
| | | |     Implemented a basic StreamingSparseFeatures. Added read functions to StreamingFile.
| | | | 
| | | | A	src/libshogun/features/StreamingSparseFeatures.h
| | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | M	src/libshogun/lib/StreamingFile.h
| | | |     
* | | | commit 03cbe1e1dc05d0e2f006fb38600fb569edd1b329
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 22:24:11 2011 +0400
| | | | 
| | | |     Added check for connectiveness at LandmarkIsomap
| | | | 
| | | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | |     
* | | | commit 9a53df8f759fab607be751f68bff528c67c13744
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sun Jun 26 20:49:16 2011 +0400
| | |   
| | |       Fixed LandmarkMDS
| | |   
| | |   M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | |    
* | | commit e7307d545e022bfb4fab21b07247f0138a6d6fdf
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 18:50:24 2011 +0400
| | | 
| | |     Fixes for geodesic distance in Isomaps
| | | 
| | | M	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | |    
* | | commit 53b127da20c8b3563a1fe4dac0352d537e7d0e76
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:30:52 2011 +0400
| | | 
| | |     Fixes for LandmarkIsomap
| | | 
| | | M	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | M	src/libshogun/preprocessor/LandmarkIsomap.h
| | |    
* | | commit ac7e2e7af8ba5962b3e95f218001d696e917bfdb
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:29:55 2011 +0400
| | | 
| | |     Fixes for LandmarkMDS
| | | 
| | | M	src/libshogun/preprocessor/LandmarkMDS.cpp
| | |    
* | | commit d041299b357ded493cfa8d63e7b737c32cf72618
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 26 17:29:36 2011 +0400
| | | 
| | |     Fixes for ClassicMDS
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | |      
* | |   commit dc2a8f8e7ab9be60d3cd429cfc1387591f378915
|\ \ \  Merge: 08d3290 65ac9bf
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 01:25:31 2011 +0400
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
* | | | commit 08d3290842d64dec8d39e9d8884d0b0db6078bf7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 26 01:22:15 2011 +0400
| | | | 
| | | |     Added getter for eigenvalues of ClassicMDS
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | |     
| | * | commit bd1e65e90890f441512a09f568dcdf7d1d0b390e
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Sat Jun 25 22:35:29 2011 +0200
| | | | 
| | | |     removed because the computer_feature_vector method will be overwritten
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |       
| | | *   commit 20ee95e33720d0003c8274f4ab02d9590247967a
| | | |\  Merge: 67b1b47 e37803f
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Sat Jun 25 14:40:57 2011 +0200
| | | |   
| | | |       Merge branch 'master' into firstGridSearch
| | | |       
| | * |   commit e37803fc9ae27724697425e9f9ed84010b218356
| | |\ \  Merge: 281f741 65ac9bf
| | |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| |   Date:   Sat Jun 25 14:40:29 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| | | |       Conflicts:
| | | |       	src/libshogun/features/SimpleFeatures.h
| | | |     
| * | | commit 65ac9bf2e9950d0b0f5bbcd9519f4650a2d3ec43
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 23:57:45 2011 +0200
| | | | 
| | | |     rename dot features' get_feature_vector/matrix functions to avoid naming clash
| | | | 
| | | | M	src/java_modular/swig_typemaps.i
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | M	src/libshogun/clustering/GMM.cpp
| | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | M	src/libshogun/features/DotFeatures.cpp
| | | | M	src/libshogun/features/DotFeatures.h
| | | | M	src/libshogun/features/Labels.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogunui/SGInterface.cpp
| | | | M	src/modular/Features.i
| | | |       
| * | |   commit 267bed1465a7f03494df900db386b43d3d348867
| |\ \ \  Merge: 8ace2c2 41415e8
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Jun 24 17:20:04 2011 +0200
| | | | | 
| | | | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | | | |      
| | * | | commit 41415e8f4e25e2d675ce3232a68f838db348da8c
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Jun 24 17:10:56 2011 +0530
| | | | | 
| | | | |     StreamingStringFeatures works minimally; some changes to parser to handle reading problems with the 1st example seen.
| | | | |     StreamingFile handles string vectors better.
| | | | | 
| | | | | A	src/libshogun/features/StreamingStringFeatures.h
| | | | | M	src/libshogun/lib/InputParser.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | |      
| | * | | commit 21db1f8a944ae56a5529f7f39daf7bfd34d107ff
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Jun 24 05:03:14 2011 +0530
| | | | | 
| | | | |     Made basic read functions for StreamingStringFeatures in StreamingFile, get_*_string*
| | | | | 
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | |        
| * | | |   commit 8ace2c28ef940d22dda59910b132ff4247bcd756
| |\ \ \ \  Merge: 8ca4620 7e02ed7
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Fri Jun 24 17:12:52 2011 +0200
| | | | |   
| | | | |       Merge branch 'gmm' of git://github.com/alesis/shogun
| | | | |      
| | * | | commit 7e02ed7cc39af93da7f49a7290ad38832a2cd003
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Fri Jun 24 15:15:51 2011 +0100
| | | | | 
| | | | |     SG* fixes
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/modular/Distribution.i
| | | | |      
| | * | | commit 9991c2a6135f7ee6eb20f22bc143b9bb5c4ed608
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Jun 23 02:49:28 2011 +0100
| | | | | 
| | | | |     Bug fixes and temporary solution for SG* python-modular problem
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit 2bc58915e1aa2239f12afa169468aca817ca529b
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 21:30:11 2011 +0100
| | | | | 
| | | | |     Added GMM and Gaussian to modular. Switched to using SGVector and SGMatrix
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/modular/Distribution.i
| | | | | M	src/modular/Distribution_includes.i
| | | | |      
| | * | | commit ccfee92ca8da44de68af866c00681f1b4cf49a9e
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 08:24:07 2011 +0100
| | | | | 
| | | | |     modular update for Gaussian and GMM
| | | | | 
| | | | | M	src/modular/Distribution.i
| | | | |      
| | * | | commit 6aae22eabfc8b1178a02742593d8a9da65ea78b9
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Wed Jun 22 04:30:36 2011 +0100
| | | | | 
| | | | |     Old changes to Gaussian and GMM to allow sampling
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit b932ea6918ec39c7d761ba9b7f9b4245df848b24
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Mon Jun 13 00:29:26 2011 +0300
| | | | | 
| | | | |     Rewrote the GMM file to use covariance types and decomposition, optimized start
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | * | | commit c7acc0825fd335cc88a7e0c02dd88d574ef7f4dc
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Jun 2 21:19:53 2011 +0100
| | | | | 
| | | | |     Fixed bugs in Gaussian.cpp
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | |      
| | * | | commit fdcf6109a2342d4376e987849bdccf08a89320cf
| |/ / /  Author: Alesis Novik <alesisnov@gmail.com>
|/| | |   Date:   Thu Jun 2 05:08:25 2011 +0100
| | | |   
| | | |       Rewritten Gaussian class to work with different covariance types in log domain.
| | | |   
| | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | |   M	src/libshogun/distributions/Gaussian.h
| | | |     
| * | | commit 8ca46207d994fbebcab2817c2d8ca7bf1680bf81
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 16:12:19 2011 +0200
| | |   
| | |       fix the serialization examples and Labels' serialization
| | |   
| | |   M	examples/undocumented/python_modular/serialization_complex_example.py
| | |   M	src/libshogun/features/Labels.cpp
| | |   M	src/libshogun/features/Labels.h
| | |   M	src/libshogun/preprocessor/Preprocessor.h
| | |      
* | |   commit ef42f4996138e5663324894f0a1037d7eaca64b3
|\ \ \  Merge: e4b52f0 88edc41
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 14:45:53 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 88edc41c8aa57f2d143532a4e4d058ffd8314850
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 16:11:41 2011 +0400
| | | | 
| | | |     Added LandmarkIsomap and fixed Isomap and LandmarkMDS
| | | | 
| | | | M	src/libshogun/preprocessor/Isomap.h
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.cpp
| | | | A	src/libshogun/preprocessor/LandmarkIsomap.h
| | | | M	src/libshogun/preprocessor/LandmarkMDS.h
| | | | M	src/libshogun/preprocessor/Preprocessor.h
| | | | M	src/modular/Preprocessor.i
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit 1b78b3ae1ce48c6fa3c85c531c401f466ab8dee3
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 16:10:30 2011 +0400
| | | | 
| | | |     Fixes for GaussianNaiveBayes
| | | | 
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | |     
| * | | commit dd0ff30d0cb8d64c6dd95d4f83c05319247179a7
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 15:13:49 2011 +0400
| | | | 
| | | |     Removed ignored = operator at RandomFourierGaussPreproc
| | | | 
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | |     
* | | | commit e4b52f0fa12bc151d391f93e9b924be2c3c69a11
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 14:45:34 2011 +0200
| | | | 
| | | |     include preprocs in all modular interfaces
| | | | 
| | | | M	src/modular/Classifier.i
| | | | M	src/modular/Clustering.i
| | | | M	src/modular/Distance.i
| | | | M	src/modular/Distribution.i
| | | | M	src/modular/Evaluation.i
| | | | M	src/modular/Kernel.i
| | | | M	src/modular/Regression.i
| | | | M	src/modular/Structure.i
| | | |     
* | | | commit 5a32d4dea27b307aa149470c0ee4d5ac50c504cb
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 14:40:36 2011 +0200
| | |   
| | |       add missing cases to kernels
| | |   
| | |   M	src/libshogun/kernel/Kernel.cpp
| | |      
* | |   commit 9e02b38cace7e4e76901b2b9395434ee76b596b6
|\ \ \  Merge: 9d78a61 8de57a2
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 12:52:20 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| * | | commit 8de57a2b19969811df78ed7fada9b7908cb3f715
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Jun 24 13:59:32 2011 +0400
| | | | 
| | | |     Fixes for python testsuite
| | | | 
| | | | M	testsuite/generator/featop.py
| | | | M	testsuite/python_modular/classifier.py
| | | | M	testsuite/python_modular/kernel.py
| | | | D	testsuite/python_modular/preproc.py
| | | | A	testsuite/python_modular/preprocessor.py
| | | | M	testsuite/python_modular/regression.py
| | | | M	testsuite/python_modular/test_one.py
| | | | M	testsuite/python_modular/util.py
| | | |     
* | | | commit 9d78a616748684703efb6803679c3cd931253180
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Fri Jun 24 12:51:53 2011 +0200
| | |   
| | |       T** transition for DotFeatures' get_feature_vector and matrix
| | |   
| | |   M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | |   M	src/libshogun/classifier/svm/SGDQN.cpp
| | |   M	src/libshogun/clustering/GMM.cpp
| | |   M	src/libshogun/distributions/Gaussian.cpp
| | |   M	src/libshogun/features/DotFeatures.cpp
| | |   M	src/libshogun/features/DotFeatures.h
| | |   M	src/libshogun/features/SimpleFeatures.h
| | |   M	src/libshogunui/SGInterface.cpp
| | |    
* | | commit 16c3af6ff7d46104d4a50f61e3d09638d67fbb2e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 24 02:45:35 2011 +0200
| | | 
| | |     import preprocessors in features too
| | | 
| | | M	src/modular/Features.i
| | |      
* | |   commit ec1eb8e0f94f7d5619031d3eede0db38067e9a40
|\ \ \  Merge: aaabffb 8dd49db
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Jun 24 00:41:58 2011 +0200
| | | | 
| | | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | | |     
| * | | commit 8dd49dbfb325e7c44bca082ff2dce07c4437fc25
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 04:08:34 2011 +0530
| | | | 
| | | |     Added the set_*_reader functions calls to StreamingFeatures as one function - set_read_functions. Call this from derived class.
| | | | 
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 591933d0bda104d4712a79de36291e9f515fa408
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 03:34:03 2011 +0530
| | | | 
| | | |     Moved set_vector_reader_* functions to StreamingFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit f692e6f899527d7d420d0943b2baaa764c66aab8
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 03:00:01 2011 +0530
| | | | 
| | | |     Corrected some constructor calls in StDotFeatures and StFeatures.
| | | | 
| | | | M	src/libshogun/features/StreamingDotFeatures.h
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | |     
| * | | commit 35ea40c4522e350da07e27bf77c33b2fd2d77855
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Fri Jun 24 02:58:18 2011 +0530
| | | | 
| | | |     Added base class constructor calls to StreamingSimpleFeatures and StreamingDotFeatures.. Made overloaded functions virtual.
| | | | 
| | | | M	src/libshogun/features/StreamingDotFeatures.h
| | | | M	src/libshogun/features/StreamingSimpleFeatures.h
| | | |     
| * | | commit 9e700d83e7280a96c601585e752fd9dab6a1d65d
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jun 23 21:26:42 2011 +0530
| | | | 
| | | |     Made parser and StreamingFeatures use function pointers for specifying functions to use while reading and parsing input.
| | | | 
| | | | M	src/libshogun/features/FeatureTypes.h
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/StreamingFeatures.h
| | | | A	src/libshogun/features/StreamingSimpleFeatures.h
| | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | M	src/libshogun/lib/InputParser.h
| | | |       
* | | |   commit aaabffb4abc494999429df03a24eca8bb36abefd
|\ \ \ \  Merge: ca09c91 1d146ef
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Thu Jun 23 23:11:20 2011 +0200
| | | |   
| | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| * | | commit 1d146ef7f6f4c2364a8e9a536be23d9fd78793bb
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Thu Jun 23 19:21:47 2011 +0800
| | | | 
| | | |     add load_dna method in Load class, splite SGStringList<char> typemap out of CStringFeatures as their jtype, jstype typemap is different, add distance_canberraword_modular.java example
| | | | 
| | | | M	examples/undocumented/java_modular/Load.java
| | | | A	examples/undocumented/java_modular/distance_canberraword_modular.java
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
* | | | commit ca09c91c9547b7695921a41c0362e12879993f7d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Thu Jun 23 23:31:44 2011 +0400
| | | | 
| | | |     Fixed LinearHMM
| | | | 
| | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | M	src/libshogun/distributions/LinearHMM.cpp
| | | | M	src/libshogun/distributions/LinearHMM.h
| | | |       
* | | |   commit 40986cc4ebb95658fd9480b0442c09e90c20d4bb
|\ \ \ \  Merge: d7c71dd cf70c01
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:44:36 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |        
| * | | |   commit cf70c01790c8e38a8faf672f144a3c4dd92e4318
| |\ \ \ \  Merge: bb3f01d 601b796
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Thu Jun 23 22:42:52 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | | |      
| * | | | commit bb3f01da3ed18999ae8d0eb1473c5606628adcfa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:42:07 2011 +0400
| | | | | 
| | | | |     Small fixes for SimpleFeatures
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |      
* | | | | commit d7c71dd639a67a89bb7837c98945f091dbdb0c5c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Thu Jun 23 22:38:38 2011 +0400
| | | | | 
| | | | |     Added example for LandmarkMDS
| | | | | 
| | | | | A	examples/undocumented/python_modular/preprocessor_landmarkmds_modular.py
| | | | |      
* | | | | commit 8ec326e6e00c109dc4e2fab7a43202fc20296341
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | |   Date:   Thu Jun 23 22:33:05 2011 +0400
| | | |   
| | | |       Introducing LandmarkMDS
| | | |   
| | | |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | |   M	src/libshogun/preprocessor/ClassicMDS.h
| | | |   A	src/libshogun/preprocessor/LandmarkMDS.cpp
| | | |   A	src/libshogun/preprocessor/LandmarkMDS.h
| | | |   M	src/modular/Preprocessor.i
| | | |   M	src/modular/Preprocessor_includes.i
| | | |     
* | | | commit 601b796b16b759c1019c0dbbf3540033076a0909
|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Thu Jun 23 00:29:35 2011 +0200
| | |   
| | |       introduce copy() to copy object for numpy arrays - various fixes for
| | |       sparse features related typemap
| | |   
| | |   M	src/libshogun/features/SparseFeatures.h
| | |   M	src/libshogun/lib/DataType.h
| | |   M	src/libshogunui/SGInterface.cpp
| | |   M	src/modular/SGBase.i
| | |   M	src/python_modular/swig_typemaps.i
| | |    
* | | commit 1c13dc48647c921c1dea8497ce66bb44ed0ab9b8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 23 01:54:19 2011 +0400
| | | 
| | |     ST* transition for PPWM
| | | 
| | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | M	src/libshogun/distributions/PositionalPWM.h
| | |    
* | | commit b38b9079d5babe46ba6cd21649bbd0167956d7e9
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Thu Jun 23 01:29:52 2011 +0400
| | | 
| | |     ST* transition for Distribution base class and Histogram
| | | 
| | | M	src/libshogun/distributions/Distribution.cpp
| | | M	src/libshogun/distributions/Distribution.h
| | | M	src/libshogun/distributions/Histogram.cpp
| | | M	src/libshogun/distributions/Histogram.h
| | |    
* | | commit 5367d36e8abebcb503b099a79d0988e898d5920b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Jun 22 04:20:04 2011 +0530
| | | 
| | |     Changed return type of get_next_example to bool in StreamingFeatures.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | |    
* | | commit d75d754738ea57d4f354fe09c0523f973a5db55a
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Wed Jun 22 21:12:25 2011 +0800
| | | 
| | |     change check.sh to accept an optional argument (.java file to check)
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| | * commit 67b1b47c2cd653e2e1e099430d369c41b9368ba4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:57:28 2011 +0200
| | | 
| | |     added second parameter to search for
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| | * commit 0eab164ad39e9162a1b65ff2a23aec4586aca5ae
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:56:59 2011 +0200
| | | 
| | |     fixed memory leak
| | | 
| | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | |    
| | * commit a72988ca26b3be63a97e82de1fe7e9cbfd87f54d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:04:26 2011 +0200
| | | 
| | |     -param tree now is automatically destroyed
| | |     -more work towards working example
| | | 
| | | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| | |    
| | * commit 721e23d4b76fa6c7ba53cd0ca4450350166e5c14
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 16:03:18 2011 +0200
| | | 
| | |     removed the destroy_tree variable and method.
| | |     root nodes now automatically destroy their tree upon deletion
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit 05b78f705c0f2c8f0dd8f383b10536a7814e2e5f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 15:35:54 2011 +0200
| | | 
| | |     replaced SG_UNREF by delete to solve mem error
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 3821a4ea00c42b3219faccfd19e0cd15ac150941
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jun 22 15:35:37 2011 +0200
| |   
| |       fixed bug where parameter in constructor was not saved
| |   
| |   M	src/libshogun/classifier/svm/LibLinear.cpp
| |   
| * commit 281f741235a6ff6bdad13a9506f7c8d65f9e600c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:19:02 2011 +0200
| | 
| |     empty line removal
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 9b082091231a8267294d6c3125cc73aca0764bd5
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:18:25 2011 +0200
| | 
| |     first changed towards linear classifier
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 5705bc1b30665c678c92f7758f887acc52db3631
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:17:40 2011 +0200
| | 
| |     put initialization of epsilon variable into init() method to avoid uninitialized values (and following valgrind errors)
| | 
| | M	src/libshogun/classifier/svm/LibLinear.cpp
| |   
| * commit f666d7a8dd204b7839d0bcfcffbc76d84871beb2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:16:38 2011 +0200
| | 
| |     name change of grid-search-example
| | 
| | D	examples/undocumented/libshogun/modelselection_grid_search.cpp
| | A	examples/undocumented/libshogun/modelselection_grid_search_simple.cpp
| |   
| * commit 63d55afd6a1de9e5e5e1bc514712f965369778f7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:01:10 2011 +0200
| | 
| |     working, memclean subset example for labels
| | 
| | M	examples/undocumented/libshogun/features_subset_labels.cpp
| |   
| * commit 896cad57b954ff4c55ac8af3381df6ddfc75647c
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 15:00:22 2011 +0200
| | 
| |     added wrapper for index conversion of subsets
| | 
| | M	src/libshogun/features/Labels.h
| |     
| *   commit 7ca4d43a7961e0e3ba73aa8f3781f2f1570ef9ce
| |\  Merge: 9ad818e d7cb64b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 14:47:55 2011 +0200
| | | 
| | |     Merge branch 'master' into subset_label_example
| | |    
| | * commit d7cb64b0687a4df18e9ae2cf6c20518cd852c492
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 22 14:47:36 2011 +0200
| | | 
| | |     removed an old comment
| | | 
| | | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | |    
| * | commit 9ad818ed60d3064b38c7acb30611214b51310842
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Wed Jun 22 14:45:54 2011 +0200
| |   
| |       example for subsets in CLabels
| |   
| |   A	examples/undocumented/libshogun/features_subset_labels.cpp
| |   
| * commit a58e4dff2e9c3829486140a0cdbe3fb653be9041
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:42:27 2011 +0200
| | 
| |     removed comment according to Soeren's suggestion
| | 
| | M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 6b779f8a75bcad5b89926cf7d51a163f70958327
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:33:43 2011 +0200
| | 
| |     usage of new matrix constructor
| | 
| | M	examples/undocumented/libshogun/features_subset_simple_features.cpp
| |   
| * commit 3c0b24b35c43e7f4ae0eb8d250b6cedbe659d376
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:29:47 2011 +0200
| | 
| |     added constructor for SGVector and SGMatrix that create new data in memory
| | 
| | M	src/libshogun/lib/DataType.h
| |   
| * commit 58c28f3dfe12db8e8f271c99aee2c208729da63e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Wed Jun 22 14:28:34 2011 +0200
| | 
| |     name of example changed
| | 
| | A	examples/undocumented/libshogun/features_subset_simple_features.cpp
| | D	examples/undocumented/libshogun/subset_simple_features.cpp
| |     
| *   commit 0434901313fca07c8f2d4fb52efe2a58d55011b9
| |\  Merge: 3fa1b11 045dc3a
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Wed Jun 22 14:18:22 2011 +0200
| |   
| |       Merge remote branch 'upstream/master'
| |   
* | commit 045dc3aeec570d5d9ba8dffcfb0918a7fc0cfabb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 21 23:38:11 2011 +0200
| | 
| |     use whitespace in docu
| | 
| | M	src/configure
| |   
* | commit b85b3fa41fce021a2b80784e0503629c7aa81631
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 21 20:50:42 2011 +0530
| | 
| |     Switched to vlen nomenclature for SGVector objects instead of length in parser and ring code.
| | 
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| |   
* | commit 356544723ce2fd8aa59f84103c6dc2c44886a0b9
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Tue Jun 21 18:13:18 2011 +0530
| | 
| |     Made dynamic reallocation possible for features. size for parser is now in terms of ring size wrt number of examples.
| | 
| | M	src/libshogun/lib/InputParser.h
| | M	src/libshogun/lib/ParseBuffer.h
| | M	src/libshogun/lib/StreamingFile.cpp
| | M	src/libshogun/lib/StreamingFile.h
| |     
* |   commit 096f05b98e3423902a98cca52a96644324f6dffb
|\ \  Merge: 4541613 cbd0931
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jun 21 18:10:11 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit cbd09317f01c59b629d45cf81a267cf574531cab
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Jun 21 16:07:36 2011 +0400
| | | 
| | |     ASSERT replacement for LocallyLinearEmbedding
| | | 
| | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 4541613206d5a6fe99c0e2eafecc49927ae0c7a3
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Jun 19 05:31:37 2011 +0530
| | | 
| | |     Cleaning up of StreamingFeatures and StreamingDotFeatures. Both are abstract classes.
| | | 
| | | A	src/libshogun/features/StreamingDotFeatures.h
| | | A	src/libshogun/features/StreamingFeatures.h
| | |    
* | | commit cb6eae7a0fdac0fca7fbf5a2186e175bf187043c
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 22:29:14 2011 +0530
| | | 
| | |     Added global tag files to .gitignore.
| | | 
| | | M	.gitignore
| | |    
| | * commit 3fa1b11749c4c6b2f4cdee104c0145d5cb0514f4
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 13:52:21 2011 +0200
| | | 
| | |     removed unused includes
| | | 
| | | M	examples/undocumented/libshogun/subset_simple_features.cpp
| | |    
| | * commit 7763f5d1290c051cc5f452e9229659c1020ad985
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 13:36:33 2011 +0200
| | | 
| | |     fixed bug (?) where output label array was deleted
| | | 
| | | M	src/libshogun/machine/LinearMachine.cpp
| | |    
| | * commit 0a24071115034c77509d445e07a7b8d31370e98b
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:59 2011 +0200
| | | 
| | |     added SimpleFeatures subset example
| | | 
| | | M	examples/undocumented/libshogun/Makefile
| | |    
| | * commit e2b83cd9fba7834dbcc02e9b3760e7eba997cd9d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:47 2011 +0200
| | | 
| | |     working, memclean example for SimpleFeatures
| | | 
| | | A	examples/undocumented/libshogun/subset_simple_features.cpp
| | |    
| | * commit f16b9939d96c0a5fd5d0972800ecf3c61df21a66
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:53:18 2011 +0200
| | | 
| | |     Subset is now accessed via inherited methods of CFeatures
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 88624b57f8ddf7a0aea41337ab6fb7ae3dffa016
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:44 2011 +0200
| | | 
| | |     made read methods const
| | | 
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 62d25c0368cf3da93a3405abf8cdb5b841ae7a78
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:33 2011 +0200
| | | 
| | |     first tested version of subset support
| | | 
| | | M	src/libshogun/features/SimpleFeatures.h
| | |    
| | * commit 8fed25feb247079f90ffc141f625bc1c3ba1424e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:52:10 2011 +0200
| | | 
| | |     -made Subset variable private
| | |     -made read methods const
| | | 
| | | M	src/libshogun/features/Labels.h
| | |    
| | * commit 77d0155dfc46a4a54510bd34c2a38f768104a2b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 21 12:51:44 2011 +0200
| | | 
| | |     -made Subset variable private
| | |     -made read methods const
| | | 
| | | M	src/libshogun/features/Features.h
| | |      
| | *   commit 43f83cfc081c8ce79d0d0bee1b71f48f558c21d9
| | |\  Merge: cee8bc9 d20d826
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Tue Jun 21 11:14:39 2011 +0200
| | |   
| | |       Merge remote branch 'upstream/master' into SimpleFeaturesSubset
| | |       
| | |       Conflicts:
| | |       	src/libshogun/features/SimpleFeatures.h
| | |    
| * | commit d20d826cdc4dc57822cf5b5610eeadc8962a6d59
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 21 01:31:40 2011 +0200
| | | 
| | |     fix labels related crasher in mkl multiclass
| | | 
| | | M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | |    
| * | commit 769d80f4abec74f989d969534eb984dd0197a0b5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 21 01:31:31 2011 +0200
| | | 
| | |     T** transition in wd kernels and sginterface
| | | 
| | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| | | M	src/libshogunui/SGInterface.cpp
| | |    
| * | commit 76c37e2226460c78284a2192ec43a7521b7a3015
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:32:02 2011 +0200
| | | 
| | |     fix compile error in mkl multiclass example
| | | 
| | | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | |    
| * | commit f5341bea3e93b0015c3221cc0185880554d887a6
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:25:20 2011 +0200
| | | 
| | |     fix cshapr compile error
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |    
| * | commit b3f2f9609b9ceebc9ce1b476f790d3bbebd0e58f
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 22:13:12 2011 +0200
| | | 
| | |     T** transition for sparse features
| | | 
| | | M	src/libshogun/features/SparseFeatures.h
| | |    
| * | commit f61db8e6c7b01a3f63d5b108152250d70a841859
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 21:39:56 2011 +0200
| | | 
| | |     fix typo -> use free_vector() to free
| | | 
| | | M	src/csharp_modular/swig_typemaps.i
| | |    
| * | commit 95ce7893078a280b2b89e140d7a762770641b177
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 21:39:07 2011 +0200
| | | 
| | |     fix a bug in KRR label getting
| | | 
| | | M	src/libshogun/regression/KRR.cpp
| | |      
| * |   commit 880d41847d5b18897471230d8e4d04d611d7a93c
| |\ \  Merge: a909a9f ab158e1
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:01:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| | | |     
| | * | commit ab158e1a3c5677b37386a49135df3970e81f2c1d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 20 21:57:52 2011 +0400
| | | | 
| | | |     Classify->apply transition for graphical python modular examples
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/krr_sinc.py
| | | | M	examples/undocumented/python_modular/graphical/svr_sinc.py
| | | | M	examples/undocumented/python_modular/graphical/util.py
| | | |     
| * | | commit a909a9f8b12b394ff106d0d1b36aa3cda91baddf
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:00:29 2011 +0200
| | | | 
| | | |     require new data
| | | | 
| | | | M	data
| | | |     
| * | | commit dd63a895f67949d6967c27abfd66ff8f213fe581
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 21:00:02 2011 +0200
| | | | 
| | | |     continue T** transition and fix compilation of static interfaces
| | | | 
| | | | M	src/libshogun/clustering/KMeans.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/SparseFeatures.h
| | | | M	src/libshogunui/GUIClassifier.cpp
| | | | M	src/libshogunui/GUIFeatures.cpp
| | | | M	src/libshogunui/GUIKernel.cpp
| | | |     
| | | * commit cee8bc900fe6cbb93d6ed5dba7237bf5813bae72
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jun 20 19:56:03 2011 +0200
| | | | 
| | | |     simple mistake
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | | * commit ed946d735b52b5e5c8958b9d8f16fbc4bcb75121
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Jun 20 19:55:11 2011 +0200
| | | | 
| | | |     more work towards subset support
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |       
| | | *   commit 2ed170b88d712bce7f85086ed2143de33879a2ba
| | | |\  Merge: 9b1d220 c7daae3
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Mon Jun 20 19:26:48 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master' into SimpleFeaturesSubset
| | | |     
| | * | commit c7daae38d5f7112d40cad2a3e2668afd76dcb25b
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Mon Jun 20 17:09:06 2011 +0400
| | |   
| | |       Small fix for ClassicMDS
| | |   
| | |   M	src/libshogun/preprocessor/ClassicMDS.cpp
| | |      
| * |   commit a71be6a551e9bae8e0992fcc8ec4eafa09b793a2
| |\ \  Merge: e72475c 478e05f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 14:22:24 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | * | commit 478e05fbd5c7be8cd94d22579745669503b19515
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Mon Jun 20 16:19:19 2011 +0400
| | | | 
| | | |     Fixes for Features and SpectrumRBFkernel
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | | M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | |     
| * | | commit e72475c7cc79672edaf3c8dc6da6e78a719f6db1
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Mon Jun 20 14:06:50 2011 +0200
| | |   
| | |       utilize free_vector/free_matrix in typemaps
| | |   
| | |   M	src/csharp_modular/swig_typemaps.i
| | |   M	src/java_modular/swig_typemaps.i
| | |   M	src/libshogun/lib/DataType.h
| | |   M	src/octave_modular/swig_typemaps.i
| | |   M	src/python_modular/swig_typemaps.i
| | |   M	src/r_modular/swig_typemaps.i
| | |   M	src/ruby_modular/swig_typemaps.i
| | |    
| * | commit 2cf4b40f880d662ec1b3f7bb36196626e3ad087c
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Jun 20 15:04:43 2011 +0400
| | | 
| | |     vector length renaming
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Subset.cpp
| | |    
| * | commit df429ebaebe145171cec9f727ef81fe188b1e7ec
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 12:50:15 2011 +0200
| | | 
| | |     fix typo
| | | 
| | | M	src/libshogun/lib/DataType.h
| | |    
| * | commit 3082f37e5011ef22ea5cd10c4fa9ebbefd109ce3
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 20 12:30:02 2011 +0200
| | | 
| | |     remove trailing whitespaces
| | | 
| | | M	src/java_modular/swig_typemaps.i
| | | M	src/lua_modular/swig_typemaps.i
| | |      
| * |   commit 890117267378d86cad7bf1dcdef93b68b4951b38
| |\ \  Merge: 2eb94d6 c5a09ba
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 20 12:25:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |       
| | * |   commit c5a09bafdc26696d7e48ca6b87d3cceca4fcfcf9
| | |\ \  Merge: 3937a21 1a4582d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:22:37 2011 +0400
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |      
| | * | | commit 3937a217e074df34695dc150b48c9129e9208fb5
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:22:20 2011 +0400
| | | | | 
| | | | |     Fixes for Hierarchical clustering
| | | | | 
| | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | |        
| | | | *   commit 9b1d2201597b4b7989cf645bf720c022e7c2b724
| | | | |\  Merge: 6d4a1a2 2eb94d6
| | |_|_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 12:22:50 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' into SimpleFeaturesSubset
| | | | |        
| * | | |   commit 2eb94d653f5ccc8dd58cd1f965823b0e92bb9a40
| |\ \ \ \  Merge: 6d4705c 3e69bee
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:20:48 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'toCheckin'
| | | | | |       
| | * | | | commit 3e69beea8a30425c66347bb030efb5e84f182324
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:20:19 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy wrapper
| | | | | | 
| | | | | | M	src/libshogun/features/Labels.h
| | | | | |       
| | * | | | commit 25b80a3eba15fa62a24d74cbf3d9d0e8f22dd661
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:51 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy wrapper
| | | | | | 
| | | | | | M	src/libshogun/features/Features.h
| | | | | |       
| | * | | | commit 5fe0797e795c3ef2e70f853d4839911702d0559b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:37 2011 +0200
| | | | | | 
| | | | | |     added wrapper methods for new Subset interface
| | | | | | 
| | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | |       
| | * | | | commit 2f34510319e4403a6aad7855c626f958269691d0
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:19:15 2011 +0200
| | | | | | 
| | | | | |     removed get_subset_copy
| | | | | | 
| | | | | | M	src/libshogun/features/Subset.cpp
| | | | | | M	src/libshogun/features/Subset.h
| | | | | |       
| | * | | | commit 9e4622639185cf2dae3d33765be3fa8c6ad158b5
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 12:14:15 2011 +0200
| | | | | | 
| | | | | |     removed string include
| | | | | | 
| | | | | | M	src/libshogun/features/Subset.cpp
| | | | | |         
| * | | | |   commit 6d4705c3486b3ad2e5aa9f85a6765d42a4dade62
| |\ \ \ \ \  Merge: 48cb8e0 1a4582d
| | |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | / /   Date:   Mon Jun 20 12:20:44 2011 +0200
| | | |/ /    
| | |/| |         Merge remote branch 'upstream/master'
| | | | |        
| | * | |   commit 1a4582d6fa8f4289c4694bb515eab74d9c02707e
| | |\ \ \  Merge: 84caa72 7525d58
| | | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Mon Jun 20 12:17:03 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | |      
| | | * | commit 7525d58bab8236e0463ec9b393cd6b9ff5024f6b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:12:12 2011 +0400
| | | | | 
| | | | |     Fix for CustomKernel
| | | | | 
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | |      
| | | * | commit 176a1b2419fd125c621633d3e9fb3b078e508c33
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 14:08:50 2011 +0400
| | | | | 
| | | | |     Fixes for Alesis code
| | | | | 
| | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | M	src/libshogun/clustering/GMM.h
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| | | * | commit 136be95898d380a700807a9279b8b518b77ebb76
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 13:49:09 2011 +0400
| | | | | 
| | | | |     Fixes for KMeans
| | | | | 
| | | | | M	src/libshogun/clustering/KMeans.h
| | | | |      
| | | * | commit 69ccc0921284694ca79f40752af960b03456dc44
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 13:32:59 2011 +0400
| | | | | 
| | | | |     Fixes for CustomKernel
| | | | | 
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | | M	src/libshogun/kernel/CustomKernel.h
| | | | |      
| | | | * commit 6d4a1a2785c22367b1a48ea97e5acc8bce9c0999
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 12:01:11 2011 +0200
| | | | | 
| | | | |     corrected name due to method name change
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |        
| | | | *   commit 0e4f105e214c71a24806e142d30120b240c2286b
| | | | |\  Merge: 90eb5ee 48cb8e0
| | |_|_|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 11:54:57 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' into SimpleFeaturesSubset
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/features/SimpleFeatures.h
| | | | |      
| * | | | commit 48cb8e04cc5fdc685274d5417cfb9604b8eaa418
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:50:38 2011 +0200
| | | | | 
| | | | |     Revert "initial changes for subset support"
| | | | |     
| | | | |     This reverts commit 69d62bead6b71f12dcb8ea77e0ae1cd1651ad072.
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | |      
| * | | | commit 562fed883d8427ee956bf87dbf6b42ee4b123ac2
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:49:41 2011 +0200
| | | | | 
| | | | |     Revert "Revert "added comment""
| | | | |     
| | | | |     This reverts commit c31b83b4d84c062b1c972b74b8944d328624e560.
| | | | | 
| | | | | M	src/libshogun/features/Subset.h
| | | | |      
| * | | | commit c31b83b4d84c062b1c972b74b8944d328624e560
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:49:11 2011 +0200
| | | | | 
| | | | |     Revert "added comment"
| | | | |     
| | | | |     This reverts commit 05ae96b0659bfb0dee354684a0d61b83e5a448b4.
| | | | | 
| | | | | M	src/libshogun/features/Subset.h
| | | | |        
| * | | |   commit 1a57d3939406022cc1d6e6b9636b3dcd881ca260
| |\ \ \ \  Merge: 84caa72 c5f2256
| | |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | |   Date:   Mon Jun 20 11:39:10 2011 +0200
| | | | |   
| | | | |       Merge branch 'toCheckin'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/evaluation/CrossValidation.cpp
| | | | |      
| | * | | commit c5f2256fe4ec80c34315987783df232230eeab03
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:36:31 2011 +0200
| | | | | 
| | | | |     interface changes of Subset class
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
| | * | | commit c6f3cbc16cd6f7a3ba3bb2fa5ca493c3935c648f
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Mon Jun 20 11:35:06 2011 +0200
| | | | | 
| | | | |     Subset class now uses SGVector
| | | | |     interface changes
| | | | | 
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/features/Features.h
| | | | | M	src/libshogun/features/Labels.cpp
| | | | | M	src/libshogun/features/Labels.h
| | | | | M	src/libshogun/features/Subset.cpp
| | | | | M	src/libshogun/features/Subset.h
| | | | |      
| * | | | commit 84caa72a8783182188f30c24c54fce8723bc458d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jun 20 11:34:10 2011 +0200
| | | | | 
| | | | |     introduce a do_free flag in sgvector/sgmatrix
| | | | | 
| | | | | M	src/libshogun/lib/DataType.h
| | | | |        
| * | | |   commit 532b5dfaf4d53959e94d608599e41b96155a0afc
| |\ \ \ \  Merge: 1327d08 891fb58
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Jun 20 10:46:24 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | | |       
| | * | | | commit 891fb58c8eccfa4e0f10fb1e89cb8e921cfbcffb
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Mon Jun 20 09:17:55 2011 +0200
| | | | | | 
| | | | | |     changed ED_MAXIMISE to ED_MAXMIMIZE. same for min
| | | | | | 
| | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | | |       
| * | | | | commit 1327d083f9c0521ea154a1865ad7cf67b537e44c
| | |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Mon Jun 20 10:45:09 2011 +0200
| | | | |   
| | | | |       T** transition for kernels in libshogunui
| | | | |   
| | | | |   M	src/libshogunui/GUIKernel.cpp
| | | | |   M	src/libshogunui/SGInterface.cpp
| | | | |      
| * | | | commit b95d2faf8b5fd82c268a6734b8d5344b7db23d42
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Jun 20 04:13:43 2011 +0400
| | | | | 
| | | | |     Various fixes
| | | | | 
| | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | M	src/libshogun/classifier/svm/SVM.cpp
| | | | | M	src/libshogun/classifier/svm/SVM.h
| | | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | | M	src/libshogun/kernel/CustomKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/libshogun/machine/KernelMachine.h
| | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | M	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | | M	src/libshogun/regression/KRR.cpp
| | | | |        
| * | | |   commit bdc3e2d7c96202ecbaf3472cdcbb90fa19b9495b
| |\ \ \ \  Merge: eecb6d6 9c9e74a
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Mon Jun 20 02:45:40 2011 +0400
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/shogun-toolbox/shogun
| | | | |      
| | * | | commit 9c9e74a339780a54561052042c481fff67fd83fd
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Jun 20 00:41:43 2011 +0200
| | | | | 
| | | | |     get rid of legacy T* x, int32_t len / or T** typemaps and transition everything to SGMatrix and friends
| | | | | 
| | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | M	src/java_modular/swig_typemaps.i
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | | M	src/libshogun/evaluation/CrossValidation.cpp
| | | | | M	src/libshogun/evaluation/SplittingStrategy.cpp
| | | | | M	src/libshogun/features/Labels.cpp
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | M	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | | M	src/libshogun/preprocessor/NormOne.cpp
| | | | | M	src/libshogun/preprocessor/PCACut.cpp
| | | | | M	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | | M	src/lua_modular/swig_typemaps.i
| | | | | M	src/modular/Classifier.i
| | | | | M	src/modular/Clustering.i
| | | | | M	src/modular/Distance.i
| | | | | M	src/modular/Distribution.i
| | | | | M	src/modular/Evaluation.i
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/Kernel.i
| | | | | M	src/modular/Library.i
| | | | | M	src/modular/Preprocessor.i
| | | | | M	src/modular/Regression.i
| | | | | M	src/modular/Structure.i
| | | | | M	src/octave_modular/swig_typemaps.i
| | | | | M	src/python_modular/swig_typemaps.i
| | | | | M	src/r_modular/sg_print_functions.cpp
| | | | | M	src/r_modular/swig_typemaps.i
| | | | | M	src/ruby_modular/swig_typemaps.i
| | | | |      
| | * | | commit bee38a562e12f48c65f0baa1963d164966da607b
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Jun 19 20:01:57 2011 +0200
| | | | | 
| | | | |     fix compilation errors in libshogunui caused by preproc refactoring
| | | | | 
| | | | | M	src/libshogunui/GUIPreprocessor.cpp
| | | | | M	src/libshogunui/SGInterface.cpp
| | | | |      
| * | | | commit eecb6d6a3b8cfe9fd8840f1f1ac48724a85f6f04
| |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Mon Jun 20 01:46:07 2011 +0400
| | | |   
| | | |       SGMatrix usage for CKNN
| | | |   
| | | |   M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | |   M	src/libshogun/classifier/KNN.cpp
| | | |   M	src/libshogun/classifier/KNN.h
| | | |     
| * | | commit bbd6767450b0eabeea9d1e71c78610d4dc30402d
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 19:51:01 2011 +0200
| | | | 
| | | |     really remove all occurences of NormDerivativeLem3
| | | | 
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit a26d599e80a6532b530fdb6ac7d7847b76911408
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 17:19:07 2011 +0200
| | | | 
| | | |     remove dysfunctional/not-implemented preproc
| | | | 
| | | | D	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | D	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | M	src/modular/Preprocessor.i
| | | |     
| * | | commit 0c142320fb4b0382a16345f603d81346bc0035eb
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:53:16 2011 +0400
| | | | 
| | | |     Rearranged modular config for Preprocessor
| | | | 
| | | | M	src/modular/Preprocessor.i
| | | | M	src/modular/Preprocessor_includes.i
| | | |     
| * | | commit 6b7038817c846f2582d278cc02d5848ff77cb94d
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:52:41 2011 +0400
| | | | 
| | | |     Various fixes for examples
| | | | 
| | | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_kernelpcacut_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_pcacut_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_randomfouriergausspreproc_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | | M	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | |     
| * | | commit 8a0e98363449a777dfc19effb4417ab5e26540d4
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:52:02 2011 +0400
| | | | 
| | | |     Fixed naming {preproc}->{preprocessor}
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | | M	src/libshogun/features/SparseFeatures.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | | M	src/libshogun/kernel/CommWordStringKernel.cpp
| | | | M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | | |     
| * | | commit f8cd65080126ec9625f17b9c5243f7d34432dc60
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 17:50:14 2011 +0400
| | | | 
| | | |     SGMatrix and SGVector usage in Preprocessor
| | | | 
| | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | | A	src/libshogun/preprocessor/DimensionReductionPreprocessor.h
| | | | M	src/libshogun/preprocessor/Isomap.cpp
| | | | M	src/libshogun/preprocessor/Isomap.h
| | | | M	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | | M	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | | | M	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | M	src/libshogun/preprocessor/LogPlusOne.h
| | | | M	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | M	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | M	src/libshogun/preprocessor/NormOne.cpp
| | | | M	src/libshogun/preprocessor/NormOne.h
| | | | M	src/libshogun/preprocessor/PCACut.cpp
| | | | M	src/libshogun/preprocessor/PCACut.h
| | | | M	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | M	src/libshogun/preprocessor/PruneVarSubMean.h
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | M	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | | M	src/libshogun/preprocessor/SimplePreprocessor.h
| | | |     
| | | * commit 90eb5ee5d49106393553e9e1d6174af767169abb
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Mon Jun 20 11:36:53 2011 +0200
| | |   
| | |       initial compiling subset support
| | |   
| | |   M	src/libshogun/features/SimpleFeatures.h
| | |    
| | * commit 71ed0320215650056e1f43db0b359b1307234ec8
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jun 20 11:25:00 2011 +0200
| | | 
| | |     Revert "changed subset methods and added SGVector"
| | |     
| | |     This reverts commit 24702d649141fbc45a436d543ca01e5d00900557.
| | | 
| | | M	src/libshogun/features/Subset.cpp
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 24702d649141fbc45a436d543ca01e5d00900557
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Mon Jun 20 11:24:12 2011 +0200
| | | 
| | |     changed subset methods and added SGVector
| | | 
| | | M	src/libshogun/features/Subset.cpp
| | | M	src/libshogun/features/Subset.h
| | |    
| | * commit 69d62bead6b71f12dcb8ea77e0ae1cd1651ad072
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |   Date:   Mon Jun 20 09:09:17 2011 +0200
| |   
| |       initial changes for subset support
| |   
| |   M	src/libshogun/features/SimpleFeatures.h
| |   
| * commit 05ae96b0659bfb0dee354684a0d61b83e5a448b4
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:05:45 2011 +0200
| | 
| |     added comment
| | 
| | M	src/libshogun/features/Subset.h
| |   
| * commit 6758a80616bb54d7d0f0bc3b8e5b720aecbf4ae3
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:04:02 2011 +0200
| | 
| |     added subset support
| | 
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/Labels.h
| |   
| * commit 6a9583ecf986d85f5eb358fa2c86c81e83cfa5cd
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:03:21 2011 +0200
| | 
| |     added wrapper methods for subset
| | 
| | M	src/libshogun/features/Features.h
| |   
| * commit 00f4430fb7da4b414c3eb87812a6207992e0b4a8
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:03:04 2011 +0200
| | 
| |     fixed error with labels and removed backuping subsets
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 486d7367eb5f79e535206af45a38625b6fe082a1
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 19 12:02:32 2011 +0200
| | 
| |     adapted new class name of ParameterCombination
| | 
| | M	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| |     
| *   commit da292320194cdfa6787496bebd8f41f3360271a5
| |\  Merge: 5b0451c dfe5bdf
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Sun Jun 19 11:17:53 2011 +0200
| | | 
| | |     Merge remote branch 'upstream/master'
| | |      
| | *   commit dfe5bdf78a1e2301293fa5347496ba5d8ffb8380
| | |\  Merge: b0c6415 80f768e
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 19 00:01:17 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | | * commit 80f768ef43ce92a86d14800c3b0b484000b1eeb8
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sun Jun 19 01:59:36 2011 +0400
| | | | 
| | | |     Fixed C{ROC,PRC}Evaluation classes
| | | | 
| | | | M	examples/undocumented/python_modular/graphical/prc.py
| | | | M	examples/undocumented/python_modular/graphical/roc.py
| | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | |     
| | * | commit b0c64158af770325900c53da28986eed75af5f16
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 23:49:05 2011 +0200
| | | | 
| | | |     add SGMatrix<float64_t> support to custom kernel constructor
| | | | 
| | | | M	src/libshogun/kernel/CustomKernel.cpp
| | | | M	src/libshogun/kernel/CustomKernel.h
| | | |     
| | * | commit 1b54f6b050b587761c12fc0eca02ac8c82a0bedb
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 23:46:57 2011 +0200
| | | | 
| | | |     don't output anything in check script
| | | | 
| | | | M	examples/undocumented/java_modular/check.sh
| | | |     
| | * | commit 3c48b36fc32988435ad6687d211ee59334b6cca1
| | |/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Sat Jun 18 23:46:12 2011 +0200
| | |   
| | |       add a dummy return statement - even though it never reached it fixes a
| | |       compiler warning
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
| | * commit e8143c544dafb47a81f5fe4b94420afa550a3230
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 19 01:00:47 2011 +0400
| | | 
| | |     Fixed examples
| | | 
| | | M	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | M	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | |      
| | *   commit 2e114b5645c54c67b64f0c990d99283035d80fa3
| | |\  Merge: 0b0ffa7 42afb17
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sat Jun 18 22:34:57 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| | | * commit 42afb172e00f6e88fa831b8bd51841e429845823
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Sat Jun 18 15:49:30 2011 +0400
| | | | 
| | | |     Added examples for new preprocessors. Fixed names for existing
| | | | 
| | | | D	examples/undocumented/python_modular/preproc_logplusone_modular.py
| | | | D	examples/undocumented/python_modular/preproc_normone_modular.py
| | | | D	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| | | | D	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| | | | D	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_classicmds_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_isomap_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_locallylinearembedding_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_logplusone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_normone_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_prunevarsubmean_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_sortulongstring_modular.py
| | | | A	examples/undocumented/python_modular/preprocessor_sortwordstring_modular.py
| | | |       
| | * |   commit 0b0ffa7ac2959c46e6d57376a9b41c6af5688334
| | |\ \  Merge: c58720e 462b0c0
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Jun 18 22:34:50 2011 +0200
| | | | | 
| | | | |     Merge branch 'lle' of git://github.com/SergeyLisitsyn/shogun
| | | | |      
| | | * | commit 462b0c09d69f387e93bcb9cb7f179a2a68d1ae8e
| | | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | |   Date:   Sat Jun 18 15:06:10 2011 +0400
| | | |   
| | | |       Use DPOSV instead of DGESV for linear system
| | | |   
| | | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | |     
| | * | commit c58720ed8d3ee3b374d0c17552c80317d45f7938
| | |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sat Jun 18 01:51:05 2011 +0400
| | |   
| | |       Some isomap refactoring
| | |   
| | |   M	src/libshogun/preprocessor/ClassicMDS.h
| | |   M	src/libshogun/preprocessor/Isomap.cpp
| | |   M	src/libshogun/preprocessor/Isomap.h
| | |    
| | * commit 7778ddf88b71391fe550d0dbb411c8566aaac438
| |/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/|   Date:   Sat Jun 18 00:13:46 2011 +0400
| |   
| |       Fixes for LLE
| |   
| |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| |   
* | commit 876874924b3434dd03b6671ff309c3ce09e5a6db
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 17:27:03 2011 +0530
| | 
| |     v_array.h fix.
| | 
| | M	src/libshogun/lib/v_array.h
| |     
* |   commit 48ea63c30f7577af828c132dedc16600d0153110
|\ \  Merge: 4c1d91d 3bbb4a5
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 17:26:03 2011 +0530
| | | 
| | |     Commit for fixing compile errors.
| | |    
| * | commit 3bbb4a5e5c7947e6ba5a6b91415aec8a0523615a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 12:19:05 2011 +0200
| | | 
| | |     temporary fix for compiler errors
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | | A	src/libshogun/lib/v_array.h
| | |    
| * | commit 0724fd99ded1dc5e3af3058d6c566820fd770438
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jun 17 17:44:02 2011 +0800
| | | 
| | |     add kernel_auc_modular example, this example crash jvm, please help check it
| | | 
| | | A	examples/undocumented/java_modular/kernel_auc_modular.java
| | |    
| * | commit 54bb0a1b26d54ca2a8f175c1fa35cb084dd22438
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Fri Jun 17 17:32:24 2011 +0800
| | | 
| | |     add some distance examples and  kernel examples, fix kerenl.i to support distance
| | | 
| | | A	examples/undocumented/java_modular/distance_braycurtis_modular.java
| | | A	examples/undocumented/java_modular/distance_canberra_modular.java
| | | A	examples/undocumented/java_modular/distance_chebyshew_modular.java
| | | A	examples/undocumented/java_modular/distance_chisquare_modular.java
| | | A	examples/undocumented/java_modular/distance_cosine_modular.java
| | | A	examples/undocumented/java_modular/distance_euclidian_modular.java
| | | A	examples/undocumented/java_modular/distance_geodesic_modular.java
| | | A	examples/undocumented/java_modular/distance_jensen_modular.java
| | | A	examples/undocumented/java_modular/distance_manhatten_modular.java
| | | A	examples/undocumented/java_modular/distance_minkowski_modular.java
| | | A	examples/undocumented/java_modular/distance_normsquared_modular.java
| | | A	examples/undocumented/java_modular/distance_tanimoto_modular.java
| | | A	examples/undocumented/java_modular/evaluation_contingencytableevaluation_modular.java
| | | A	examples/undocumented/java_modular/evaluation_meansquarederror_modular.java
| | | A	examples/undocumented/java_modular/evaluation_multiclassaccuracy_modular.java
| | | A	examples/undocumented/java_modular/evaluation_prcevaluation_modular.java
| | | A	examples/undocumented/java_modular/evaluation_rocevaluation_modular.java
| | | A	examples/undocumented/java_modular/kernel_cauchy_modular.java
| | | A	examples/undocumented/java_modular/kernel_chi2_modular.java
| | | A	examples/undocumented/java_modular/kernel_circular_modular.java
| | | A	examples/undocumented/java_modular/kernel_combined_custom_poly_modular.java
| | | A	examples/undocumented/java_modular/kernel_const_modular.java
| | | A	examples/undocumented/java_modular/kernel_diag_modular.java
| | | A	examples/undocumented/java_modular/kernel_distance_modular.java
| | | M	src/modular/Kernel.i
| | |    
* | | commit 4c1d91de4aa7a2b434dfb12925a434e210caa309
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 17:22:39 2011 +0530
| | | 
| | |     Fixed license of v_array.h
| | | 
| | | M	src/libshogun/lib/v_array.h
| | |    
* | | commit 9a5e66e783b7ca6df2892fa0b684ae911d016ac7
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Fri Jun 17 17:20:58 2011 +0530
| |   
| |       Removed StreamingFeatures.*, added v_array.h
| |   
| |   D	src/libshogun/features/StreamingFeatures.cpp
| |   D	src/libshogun/features/StreamingFeatures.h
| |   A	src/libshogun/lib/v_array.h
| |   
| * commit 5b0451c3c4f9f32718960c7a2d26cab31e02dd52
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 11:14:32 2011 +0200
| | 
| |     added copyright notice
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit c963b8f8baa99d01c8eed6b68b15a409e700967b
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:54:34 2011 +0200
| | 
| |     adapted new class name of ParameterCombination
| | 
| | M	examples/undocumented/libshogun/modelselection_grid_search.cpp
| |   
| * commit e230f0a3098f112911069de44570d304485acc32
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:50:30 2011 +0200
| | 
| |     added Subset variable to init
| | 
| | M	src/libshogun/features/Features.cpp
| | M	src/libshogun/features/Labels.cpp
| |   
| * commit 08d6ce144f4717a08da1dacd94365e629c8c76a6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:50:00 2011 +0200
| | 
| |     added serialization support
| |     adapted new class name of ParameterCombination
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit f466637f0674e8a15ace5a71ecc08f990683777f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:49:38 2011 +0200
| | 
| |     does not inherit from Subset anymore, but has a variable of that type
| | 
| | M	src/libshogun/features/Features.h
| |   
| * commit ca3e0e9a6c164aa1e7cdd45bee2d9d5041277252
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:49:16 2011 +0200
| | 
| |     does not inherit from Subset anymore, but has a variable of that type
| | 
| | M	src/libshogun/features/Labels.h
| |   
| * commit 2be3c8cd140421fdf3f944c3c23514ac7083cae2
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:47:18 2011 +0200
| | 
| |     does not inherit from Subset anymore but has a variable of that type
| | 
| | M	src/libshogun/features/StringFeatures.h
| |   
| * commit 8a206d2b7dda81d44186b73d1a64e1827a5d8486
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:46:56 2011 +0200
| | 
| |     now inherits from CSGObject
| |     should not be extended anymore
| |     added serialization support
| | 
| | M	src/libshogun/features/Subset.cpp
| | M	src/libshogun/features/Subset.h
| |   
| * commit e64602f034922d24d97010ab15cf4d46faf5fe87
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:45:08 2011 +0200
| | 
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | M	src/libshogun/modelselection/GridSearchModelSelection.h
| |   
| * commit 184d0ee773561db096e0d2df86c6d0d00bce42be
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:44:53 2011 +0200
| | 
| |     added serialization support
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/ModelSelection.cpp
| | M	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit 5484f41bccf5535f9d40857cde7254cc5315144e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:44:28 2011 +0200
| | 
| |     added serialization support
| |     adapted class name of ParameterCombination
| | 
| | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | M	src/libshogun/modelselection/ModelSelectionParameters.h
| |   
| * commit 04544287899538b06de78ee41d156860612ab915
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 17 10:43:57 2011 +0200
| | 
| |     removed inheritance from CSGObject
| | 
| | M	src/libshogun/modelselection/ParameterCombination.cpp
| | M	src/libshogun/modelselection/ParameterCombination.h
| |     
| *   commit acc8a031d5a323178090e98a6bb29a70b15c3808
| |\  Merge: de36363 6ce47b0
| |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/|   Date:   Fri Jun 17 10:23:37 2011 +0200
| |   
| |       Merge remote branch 'upstream/master'
| |   
* | commit 6ce47b047fdcc0c3606c932a526992528bb9385b
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 04:35:42 2011 +0530
| | 
| |     More copyright changes to IOBuffer.
| | 
| | M	src/libshogun/lib/IOBuffer.cpp
| | M	src/libshogun/lib/IOBuffer.h
| |   
* | commit e14b29ff67874762f7cce833fb3bb79b03811004
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Fri Jun 17 04:21:16 2011 +0530
| | 
| |     Changed copyrights in IOBuffer and made it derive from CSGObject.
| | 
| | M	src/libshogun/lib/IOBuffer.cpp
| | M	src/libshogun/lib/IOBuffer.h
| |     
* |   commit fe6ab74e0d43f01c460aee0326b5b5b93c10fea6
|\ \  Merge: 86542c4 40c6576
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Fri Jun 17 04:16:18 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit 40c6576dc988f4ec10581722dbafdd090911c52a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 00:26:33 2011 +0200
| | | 
| | |     add missing functions to Distance/Kernel/LinearMachine such that
| | |     all examples run through at least. Minor fixes to example files.
| | | 
| | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | M	src/libshogun/distance/Distance.cpp
| | | M	src/libshogun/distance/Distance.h
| | | M	src/libshogun/kernel/Kernel.cpp
| | | M	src/libshogun/kernel/Kernel.h
| | | M	src/libshogun/machine/LinearMachine.h
| | |    
| * | commit 5c71d645a57e442ae5998013ef901d41c3140bd5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Jun 17 00:25:38 2011 +0200
| | | 
| | |     polish minimal example to use jblas' signum / mean etc and simplify code slightly
| | | 
| | | M	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | |    
| * | commit 38fe3d6f2d4d8c1d638e4cbdc71eba7bdef9ed86
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:14:20 2011 +0800
| | | 
| | |     make path relative to the java_modular examples dir and output the out_labels
| | | 
| | | M	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | M	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | M	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | M	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | M	examples/undocumented/java_modular/classifier_larank_modular.java
| | | M	examples/undocumented/java_modular/classifier_lda_modular.java
| | | M	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | |    
| * | commit a56ddf38db032a7ff72ddc2e82bb76f5b98004a9
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:10:01 2011 +0800
| | | 
| | |     rename to be classifier_libsvm_minimal_modular.java
| | | 
| | | D	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | A	examples/undocumented/java_modular/classifier_libsvm_minimal_modular.java
| | |    
| * | commit 695bef7826455cdc88159f34f138dfcbf371261c
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:05:10 2011 +0800
| | | 
| | |     add classifier_libsvm_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvm_modular.java
| | |    
| * | commit 9c71480ad7523cf7daff37ea76fc88f450138951
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 21:01:49 2011 +0800
| | | 
| | |     classifier_libsvmmulticlass_modular
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvmmulticlass_modular.java
| | |    
| * | commit c2f06d4b67327ed70fdd6326f95ce8b0d7f618d3
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:55:17 2011 +0800
| | | 
| | |     add  classifier_libsvmoneclass_modular example
| | | 
| | | A	examples/undocumented/java_modular/classifier_libsvmoneclass_modular.java
| | |    
| * | commit 59a44097f2a5a4eb0f88a4668d33df683f905db5
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:53:38 2011 +0800
| | | 
| | |     add classifier_mpdsvm_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_mpdsvm_modular.java
| | |    
| * | commit 36884aa3fa2b428b75fe7fcf42f28bc0340c33a8
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:51:40 2011 +0800
| | | 
| | |     add  classifier_perceptron_modular.java example
| | | 
| | | A	examples/undocumented/java_modular/classifier_perceptron_modular.java
| | |    
| * | commit 2089d24a050d63a8c6a06685e06ff3b9bc3990c7
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 20:46:44 2011 +0800
| | | 
| | |     fix check.sh
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| * | commit 83871aa981b40d547797af05514a048b178e2fb0
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 17:05:49 2011 +0800
| | | 
| | |     fix check.sh
| | | 
| | | M	examples/undocumented/java_modular/check.sh
| | |    
| * | commit e38049601b5a5509af8f5209d851761dee47a856
| | | Author: Baozeng Ding <sploving1@gmail.com>
| | | Date:   Thu Jun 16 16:50:37 2011 +0800
| | | 
| | |     add check.sh to check java examples
| | | 
| | | A	examples/undocumented/java_modular/check.sh
| | |    
* | | commit 86542c48d4268aaa4d063d415539e7f26dd8e707
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Tue Jun 14 12:08:34 2011 +0530
| | | 
| | |     Changed include path to reflect new parser file.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.h
| | |      
* | |   commit e9f10d3b0642fe587dc6cdd85181a133e6d444e9
|\ \ \  Merge: 520f61c 80305b6
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 12:07:15 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
* | | | commit 520f61c6af76b93f5da3dd3c827c845e359c3ea4
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 01:38:43 2011 +0530
| | | | 
| | | |     Removed parser.h, buffer.h files.
| | | | 
| | | | D	src/libshogun/lib/buffer.h
| | | | D	src/libshogun/lib/parser.h
| | | |     
* | | | commit e1253956b97421e6ffcb23ee587550a902be1bd7
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Tue Jun 14 01:37:52 2011 +0530
| | | | 
| | | |     Templated the examples ring and the parser, renamed the files properly. Removed original parser.cpp and buffer.cpp
| | | | 
| | | | A	src/libshogun/lib/InputParser.h
| | | | A	src/libshogun/lib/ParseBuffer.h
| | | | D	src/libshogun/lib/buffer.cpp
| | | | M	src/libshogun/lib/buffer.h
| | | | D	src/libshogun/lib/parser.cpp
| | | | M	src/libshogun/lib/parser.h
| | | |     
* | | | commit 04eb2a5142aef0298307a0866f0aa35321d3af07
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jun 13 19:53:38 2011 +0530
| | | | 
| | | |     Rewrite of some class names for IOBuffer in AsciiFile.h
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.h
| | | |     
* | | | commit fa564bd3c3720ee9e22c14253d5e18f6ae00a667
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Jun 13 19:50:02 2011 +0530
| | | | 
| | | |     Initial port of VW's io buffer class for shogun.
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.h
| | | | A	src/libshogun/lib/IOBuffer.cpp
| | | | A	src/libshogun/lib/IOBuffer.h
| | | |       
| | | *   commit de3636378303d6bab380519b1beca0813a60d63d
| | | |\  Merge: 5004262 301896d
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Thu Jun 16 21:51:10 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| | * | commit 301896d052cde109b5606a04d3076355adeab136
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:16:56 2011 +0200
| | | | 
| | | |     fix compilation error in python modular
| | | | 
| | | | M	src/modular/Regression.i
| | | |     
| | * | commit a6e3ec9765d384b598d5d1ec885542a7eee0e0fc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:16:28 2011 +0200
| | | | 
| | | |     make path relative to the java_modular examples dir
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | |     
| | * | commit 218bd896f3aad4feee5f69bedcd20243ca9a6c1f
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Thu Jun 16 00:15:53 2011 +0200
| | | | 
| | | |     add support for SGMatrix in constructor
| | | | 
| | | | M	src/libshogun/features/SimpleFeatures.h
| | | |     
| | | * commit 5004262c1456d4d37729e9a362d498a3bd577290
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:58:20 2011 +0200
| | | | 
| | | |     added example for a simple grid-search
| | | | 
| | | | M	examples/undocumented/libshogun/Makefile
| | | | A	examples/undocumented/libshogun/modelselection_grid_search.cpp
| | | |     
| | | * commit 5999e11d491151ac4b6f529c877bfb28f9b1d87b
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:57:56 2011 +0200
| | | | 
| | | |     removed debug prints
| | | | 
| | | | M	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | |     
| | | * commit d8ed36688ab3d10a7bf2e3ccc526f94e5ad6a3c0
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:52:15 2011 +0200
| | | | 
| | | |     added getter for learning machine
| | | | 
| | | | M	src/libshogun/evaluation/CrossValidation.h
| | | |     
| | | * commit 5ec8c5a8f96599f608a41c9210fa0a03655c01ac
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:52:03 2011 +0200
| | | | 
| | | |     first model selection implementation: grid search
| | | | 
| | | | A	src/libshogun/modelselection/GridSearchModelSelection.cpp
| | | | A	src/libshogun/modelselection/GridSearchModelSelection.h
| | | |     
| | | * commit ace445406c1ed2f9c025c06aae9ee6db20200e24
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:51:47 2011 +0200
| | | | 
| | | |     addded result variable to select model method
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelection.cpp
| | | | M	src/libshogun/modelselection/ModelSelection.h
| | | |     
| | | * commit e84247a949a35b5ac00a4fcab996f8a19a4dd311
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:51:20 2011 +0200
| | | | 
| | | |     added variable to determine if destroy is called in destructor
| | | | 
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | |     
| | | * commit 7994153620c6b34f4de314d45d80b4c03628aff1
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Wed Jun 15 18:50:52 2011 +0200
| | | | 
| | | |     decided to not do this
| | | | 
| | | | D	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersNameNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersNameNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersObjectNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersObjectNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersRootNode.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersRootNode.h
| | | | D	src/libshogun/modelselection/ModelSelectionParametersTree.cpp
| | | | D	src/libshogun/modelselection/ModelSelectionParametersTree.h
| | | |       
| | | *   commit 59ad31f5bdf2188a5d4365fea7cdaa4266f3e226
| | | |\  Merge: 6c64b2f 0d30ea3
| | | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |/|   Date:   Wed Jun 15 13:33:16 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| | * | commit 0d30ea34ec2eea670d9baa90281206db325fecd9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 10:49:16 2011 +0200
| | | | 
| | | |     fix knn example and %import distance to get knn to work
| | | | 
| | | | M	examples/undocumented/java_modular/classifier_knn_modular.java
| | | | M	src/modular/Classifier.i
| | | |     
| | * | commit 22ccbc69b8ef7c4f974a6b4d4fb368471397a261
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:39:12 2011 +0800
| | | | 
| | | |     add example file classifier_liblinear_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_liblinear_modular.java
| | | |     
| | * | commit acb5a29e7cbb9a6add445f5b8adcf6f6730f81d0
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:25:23 2011 +0800
| | | | 
| | | |     add example file classifier_lda_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_lda_modular.java
| | | |     
| | * | commit 9a035eb19eb73dc6f2bc00f003ea91b7b9f389c2
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 13:03:01 2011 +0800
| | | | 
| | | |     add example file classifier_larank_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_larank_modular.java
| | | |     
| | * | commit cdb8aa94a1c9a9d78c97e14381b45b1091a1ae09
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 12:56:15 2011 +0800
| | | | 
| | | |     add example file classifier_knn_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_knn_modular.java
| | | |     
| | * | commit e9b4916c7d8435c03f5f2b6c8f6d711f4e66717f
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 12:24:53 2011 +0800
| | | | 
| | | |     add example file classifier_gpbtsvm_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gpbtsvm_modular.java
| | | |     
| | * | commit 5e9d9cd9ac246fc00e93ce53201b6f4abeac0010
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 11:25:03 2011 +0800
| | | | 
| | | |     add example file classifier_gmnpsvm_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gmnpsvm_modular.java
| | | |     
| | * | commit 191b17d269c8f563d6634ef241a3d81a162315fd
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 11:13:36 2011 +0800
| | | | 
| | | |     add example file classifier_gaussiannaivebayes_modular.java file
| | | | 
| | | | A	examples/undocumented/java_modular/classifier_gaussiannaivebayes_modular.java
| | | |     
| | * | commit 4db34050c9ac20962e9bba84a30b9d1df550157c
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Wed Jun 15 10:35:24 2011 +0800
| | | | 
| | | |     add java help file Load.java and example classifier_averaged_perceptron_modular.java
| | | | 
| | | | A	examples/undocumented/java_modular/Load.java
| | | | A	examples/undocumented/java_modular/classifier_averaged_perceptron_modular.java
| | | |     
| | * | commit aae10fb9f60f7426f28316e026dd2c611cee15fc
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 00:14:51 2011 +0200
| | | | 
| | | |     make init() a private function
| | | | 
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | |     
| | * | commit 125418559cb3a058ad2c5dcbf6ea580ca4338542
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Jun 15 00:14:25 2011 +0200
| | | | 
| | | |     fix numpy error in evaluation examples
| | | | 
| | | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | |     
| | * | commit b23144d9b921dcdad463cb77b7904529d09982c0
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Tue Jun 14 23:24:21 2011 +0200
| | | | 
| | | |     Transition: get_labels() now no longer returns a copy of the labels but
| | | |     a ptr - adjust algorithms accordingly.
| | | | 
| | | | M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| | | | M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| | | | M	src/libshogun/classifier/svm/SVMLin.cpp
| | | | M	src/libshogun/classifier/svm/SVMOcas.cpp
| | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | M	src/libshogun/regression/KRR.cpp
| | | |     
| | * | commit 2d0fc5e60cbe4c425b5e25fbcf8d45ee4e5ef908
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Jun 14 23:04:59 2011 +0200
| | |   
| | |       don't include SVM's in regression modules but merely %import Classifiers
| | |   
| | |   M	src/modular/Regression.i
| | |    
| | * commit 6c64b2f52e8f7a0ebd325e371629290dff09be8f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 17:57:54 2011 +0200
| | | 
| | |     introduced new classes for holding model selection parameters
| | | 
| | | A	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersDiscreteNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersNameNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersNameNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersObjectNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersObjectNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersRootNode.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersRootNode.h
| | | A	src/libshogun/modelselection/ModelSelectionParametersTree.cpp
| | | A	src/libshogun/modelselection/ModelSelectionParametersTree.h
| | |    
| | * commit 287dbdaf481b5f3e21aa967ce35e534decfa06cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:27:10 2011 +0200
| | | 
| | |     added setter to set values vector directly wihtout set_range
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit aa47f11af6fc72d576825f9fae6f50db7b469071
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:24:30 2011 +0200
| | | 
| | |     added type check for range
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | |    
| | * commit a33216142a8cdff68841d78b2d90e10634b6ccf5
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 16:15:59 2011 +0200
| | | 
| | |     put a member variable from heap to stack
| | | 
| | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | |    
| | * commit d77ee5f31d9c378ee4f6f3276e9fe873a331b1cc
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 15:09:25 2011 +0200
| | | 
| | |     -made class abstract
| | |     -now only depends on cross-validation and model selection parameters
| | | 
| | | M	src/libshogun/modelselection/ModelSelection.cpp
| | | M	src/libshogun/modelselection/ModelSelection.h
| | |    
| | * commit fd7a06144a051fcb0b96f75d3d07b011d7c8ba53
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:55:18 2011 +0200
| | | 
| | |     corrected spelling mistakes
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.h
| | |    
| | * commit 81d8dcae43b9a52b3a7dedc8ed1904998041f40f
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:49:12 2011 +0200
| | | 
| | |     fixed a memory error
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit b1b77d6e499c07a7fd6ea87f29b42523978c5342
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:39:34 2011 +0200
| | | 
| | |     -subsets are now backuped and restored
| | |     -label subsets are now used
| | | 
| | | M	src/libshogun/evaluation/CrossValidation.cpp
| | |    
| | * commit 5c6fb79c6999b58bb4084e407e8e1450b2c43cda
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:39:02 2011 +0200
| | | 
| | |     added subset support to this class
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Labels.h
| | |    
| | * commit ce8ad97ec821a254a7447210be713649dd50a6e7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:38:46 2011 +0200
| | | 
| | |     added parameter registration of subset indices
| | | 
| | | M	src/libshogun/features/Features.cpp
| | |    
| | * commit 5066c68d25f05d2fbd1ad44eb88187ab8840db05
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:38:27 2011 +0200
| | | 
| | |     removed copy/paste error, this has to go into CFeatures
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 355a0b37ecd2d0b1dcb1bb1e53c575112a97b3bb
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:37:56 2011 +0200
| | | 
| | |     name changes due to new Subset class
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
| | * commit 8bc8dcf45bbfd15a8199c6d96a7101ce9e50410c
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:36:46 2011 +0200
| | | 
| | |     moved subset stuff into newly created Subset class
| | | 
| | | M	src/libshogun/features/Features.cpp
| | | M	src/libshogun/features/Features.h
| | |    
| | * commit 8cdf0f33ee18d06824b953e084a854d62104494d
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Tue Jun 14 14:36:17 2011 +0200
| | | 
| | |     added class which encapsulates subset support which may be used by different classes
| | | 
| | | A	src/libshogun/features/Subset.cpp
| | | A	src/libshogun/features/Subset.h
| | |      
| | *   commit f091e2fe8387855a42e1c8f7ce7ef503dcbc7bfa
| | |\  Merge: b907677 80305b6
| | |/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/|   Date:   Tue Jun 14 13:27:52 2011 +0200
| | |   
| | |       Merge remote branch 'upstream/master'
| | |    
| * | commit 80305b6cb9e2578110b4c852b49e41a08e06c5c7
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:46:41 2011 +0200
| | | 
| | |     simplify and fix java examples that now really do work :)
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | M	examples/undocumented/java_modular/VectorTest.java
| | |    
| * | commit f7acf8aa5b3b42dcc96ea120865e6fe7e3dc2496
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:45:59 2011 +0200
| | | 
| | |     introduce init_shogun_with_defaults (aka printf) to enable output from e.g. java
| | | 
| | | M	src/libshogun/base/init.cpp
| | | M	src/libshogun/base/init.h
| | |    
| * | commit 446cc2f554d3eb9412163d597ca6721cc2f763d4
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Jun 14 01:44:14 2011 +0200
| | | 
| | |     Adjust Labels for SGVector
| | |     
| | |     This includes: from now on get_* functions never copy the label vector;
| | |     set_* functions own the memory and delete[] it on destruction
| | | 
| | | M	src/libshogun/features/Labels.cpp
| | | M	src/libshogun/features/Labels.h
| | |      
| * |   commit 97dc4f9aedbc15eed2e14b44277148a62b10a609
| |\ \  Merge: 9552aef 3312df8
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Jun 13 23:38:19 2011 +0200
| | | | 
| | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| | * | commit 3312df88aca431c29255bd6bfb2799c8da8b8161
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Mon Jun 13 15:01:42 2011 +0800
| | | | 
| | | |     fix ClassifierLibsvmMinimalModular error
| | | | 
| | | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | |     
| | * | commit 8273fa1e3c889ca91b255fbf9c1e91f128f705f4
| | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | Date:   Mon Jun 13 13:52:01 2011 +0800
| | | | 
| | | |     fix jblas vector example VectorTest.java
| | | | 
| | | | M	examples/undocumented/java_modular/VectorTest.java
| | | | M	src/java_modular/swig_typemaps.i
| | | |     
| * | | commit 9552aefb877168b1b24da9c31ef2a67ad3bfb029
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Mon Jun 13 23:02:23 2011 +0400
| | |   
| | |       Crucial fixes for drunk-made mistakes in LocallyLinearEmbedding
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 9ec240ce3a2afe28112e67f5607bffbc88ba5296
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Jun 13 11:37:14 2011 +0200
| | | 
| | |     modified example to work with jblas DoubleMatrix
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | |    
* | | commit 78b55387ca94f512e29ca16e05c60b75b4213c87
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Mon Jun 13 11:17:48 2011 +0200
| |   
| |       test if doxygen is installed and only then add the *_doxygen.i files as
| |       deps
| |   
| |   M	src/.generate_link_dependencies.py
| |     
* |   commit 0410dce0aa3c183b91d884a113565ba489255a11
|\ \  Merge: db3ccd1 77ae6f5
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sun Jun 12 22:02:14 2011 +0200
| | | 
| | |     Merge branch 'mds' of git://github.com/SergeyLisitsyn/shogun
| | |    
| * | commit 77ae6f5f150e39045d21498e9bc9646d60c2a34b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 12 15:09:13 2011 +0400
| | | 
| | |     Added routine for applying to distance
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | |    
| * | commit bb8fd50aa433a47321805b4831a413ba68c9e4e5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun Jun 12 03:28:45 2011 +0400
| | | 
| | |     Refactored CClassicMDS and CIsomap
| | | 
| | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | M	src/libshogun/preprocessor/Isomap.cpp
| | | M	src/libshogun/preprocessor/Isomap.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | |      
* | |   commit db3ccd10b069461c78bed8d18e12fb27b63dfa56
|\ \ \  Merge: 28caeff 74a854b
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Sun Jun 12 22:01:41 2011 +0200
| | | | 
| | | |     Merge branch 'lle' of git://github.com/SergeyLisitsyn/shogun
| | | |     
| * | | commit 74a854b80e559f5291891c5b390bf250634df36a
| |/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Sun Jun 12 04:57:35 2011 +0400
| | |   
| | |       Various fixes and beautifications ;) of CLocallyLinearEmbedding
| | |   
| | |   M	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | |    
* | | commit 28caeff4c2bd4e9d8bc5fce01e454655ca2e05d7
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Sun Jun 12 05:06:45 2011 +0400
| |   
| |       Fixed .gitignore
| |   
| |   M	.gitignore
| |     
* |   commit d761ec2198fa45ec2c52ba42faf873c3066eed90
|\ \  Merge: 24b8f99 5af267d
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Jun 11 21:27:20 2011 +0200
| | | 
| | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | |    
| * | commit 5af267d360f899c864a57c77ff86ef0fc3bbf1f7
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:45:43 2011 -0400
| | | 
| | |     I FIXED IT!!!  yeah, i was being stupid and not getting the sign of the labels (i built the method to do it and everything!) so yeah, now it works!
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
| * | commit 201cf9dabb5b7cb85d15e25004d83026e7676104
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:15:48 2011 -0400
| | | 
| | |     another small change... just reducing crud that dosn't need to be there
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
| * | commit c3ba4d8234a26c8ed3fdeb71b35091e9ae4eb600
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Wed Jun 8 23:07:58 2011 -0400
| | | 
| | |     removed the "require 'pry'" line, as it's not needed ('twas usint it for debugging)
| | | 
| | | M	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| | |    
* | | commit 24b8f99388226ed7aa933db2941fee0a0022bec5
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Sat Jun 11 00:08:01 2011 +0400
| |   
| |       Added CIsomap
| |   
| |   A	src/libshogun/preprocessor/Isomap.cpp
| |   A	src/libshogun/preprocessor/Isomap.h
| |   M	src/modular/Preprocessor.i
| |   M	src/modular/Preprocessor_includes.i
| |   
| * commit b907677c675f72afa707aa609b0e0573bc8f99a9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Tue Jun 14 13:27:01 2011 +0200
| | 
| |     fixed memory leak
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 8d358c98870ed39329471577c5f959bc9b85292e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 12 23:01:51 2011 +0200
| | 
| |     removed unnecessary NULL check
| | 
| | M	src/libshogun/features/Features.cpp
| |   
| * commit ffd6fa002819193aa8173cb64cc1c12a56eea9b7
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sun Jun 12 22:21:21 2011 +0200
| | 
| |     -added features as parameter
| |     -finished evaluate_one_run method
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit b48dbb58a23a4b7a89f4ceadf724d69b4b4eba57
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 17:05:53 2011 +0200
| | 
| |     moved some stuff to cross-validation class leaving this one nearly empty
| | 
| | M	src/libshogun/modelselection/ModelSelection.cpp
| | M	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit 69d8d2dc15767e7db19bcf00ec201a6fe71c8074
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 17:05:17 2011 +0200
| | 
| |     class not abstract anymore and provides an example implementation of evaluate_one_run which may be used for accuracy and AUC for example
| | 
| | M	src/libshogun/evaluation/CrossValidation.cpp
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 8493bcef39a4b25b1b10af0612def8232027536d
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:47:32 2011 +0200
| | 
| |     -little interface changes
| |     -method to generate set of inverse indices
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.cpp
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit 7f5736313a04c0f64d9d600338a0a40a240b40d9
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:29:58 2011 +0200
| | 
| |     added comment
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit d693b122f141bd0fc11d35878db0d6a26a4614cf
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:27:34 2011 +0200
| | 
| |     added getter for number of subsets
| | 
| | M	src/libshogun/evaluation/SplittingStrategy.h
| |   
| * commit 3a0887194e8378f085e38ba6469c66403188d6b0
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:17:32 2011 +0200
| | 
| |     class rename
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| |   
| * commit 73dfe7a816942ed27b1b91fe0376c375a3afec71
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:17:17 2011 +0200
| | 
| |     initial implementation of cross-validation class
| | 
| | A	src/libshogun/evaluation/CrossValidation.cpp
| |   
| * commit 2f0a6b3cd529de7040254f89ae893d0bb6eeed99
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:16:59 2011 +0200
| | 
| |     small correction
| | 
| | M	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 1a28a737d8f03c13712b314499ad0bbc33492ca6
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 16:06:07 2011 +0200
| | 
| |     first version of cross-validation interface
| | 
| | A	src/libshogun/evaluation/CrossValidation.h
| |   
| * commit 0bddb43e462299f6e9536b4f649dcadff114a47e
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Sat Jun 11 15:15:55 2011 +0200
| | 
| |     added optimisation direction to CEvaluation
| | 
| | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | M	src/libshogun/evaluation/Evaluation.h
| | M	src/libshogun/evaluation/MeanSquaredError.h
| | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | M	src/libshogun/evaluation/PRCEvaluation.h
| | M	src/libshogun/evaluation/ROCEvaluation.h
| |   
| * commit 6268b95443af9352168dd5a441386ab0c256047f
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:39 2011 +0200
| | 
| |     initial (not yet working) draft of model selection class
| | 
| | A	src/libshogun/modelselection/ModelSelection.cpp
| | A	src/libshogun/modelselection/ModelSelection.h
| |   
| * commit dcd89701c24a51537aabf5ac529a8b38ae1904ae
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:17 2011 +0200
| | 
| |     class rename
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | M	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 3b33770781b5561aa8495f7afa2a232ea56d6525
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Fri Jun 10 18:26:03 2011 +0200
| | 
| |     rename
| | 
| | D	src/libshogun/evaluation/StratifiedCrossValidation.cpp
| | D	src/libshogun/evaluation/StratifiedCrossValidation.h
| | A	src/libshogun/evaluation/StratifiedCrossValidationSplitting.cpp
| | A	src/libshogun/evaluation/StratifiedCrossValidationSplitting.h
| |   
| * commit 51fc467628fe036c574c886c07785a16ea4fe404
| | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | Date:   Thu Jun 9 11:34:56 2011 +0200
| | 
| |     removed a comment
| | 
| | M	src/libshogun/evaluation/StratifiedCrossValidation.h
| |   
| * commit 57d01c2fe8dacd5484ecf59323962b59f4b7c4f3
|/  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|   Date:   Thu Jun 9 11:34:47 2011 +0200
|   
|       added default constructor
|   
|   M	src/libshogun/evaluation/SplittingStrategy.cpp
|   M	src/libshogun/evaluation/SplittingStrategy.h
|    
*   commit dfd680418931e9c0528f45390b149b22f1ca021d
|\  Merge: 0a9ffa2 42ea1d3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 9 00:53:41 2011 +0200
| | 
| |     Merge branch 'master' of git://github.com/serialhex/shogun
| |   
| * commit 42ea1d3b3dc2dd24da5d6e15c56b179f7493eec7
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Jun 8 18:40:30 2011 -0400
| | 
| |     removed simple ruby test
| | 
| | D	testsuite/ruby_modular/test_libs.rb
| | D	testsuite/ruby_modular/test_mod.rb
| |   
| * commit 5fbcb404735061f7eede1dd07a70b043110a2b43
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Wed Jun 8 18:38:16 2011 -0400
| | 
| |     added ruby_modular libSVM example... needs to be clean & probably fixed...
| | 
| | A	examples/undocumented/ruby_modular/classifier_libsvm_minimal_modular.rb
| |   
| * commit baba154394b3e9a926ee4a5b5a8a966f0df0d246
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Tue Jun 7 14:58:15 2011 -0400
| | 
| |     changed test_libs.rb to use test_mod.rb so i can do cool "must 'do something awesome' do ... end" type testing.
| | 
| | M	testsuite/ruby_modular/test_libs.rb
| | A	testsuite/ruby_modular/test_mod.rb
| |   
| * commit 1153eb7820372ece4dc110c6ec408f6b522b9981
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Tue Jun 7 09:34:04 2011 -0400
| | 
| |     added a test for loading the modules in ruby.  there is some error about an invalid name for a constant which should be fixed, but OTT, it works fine
| | 
| | A	testsuite/ruby_modular/test_libs.rb
| |   
* | commit 0a9ffa2e16b9c22ed1a424c42dae0bbb11a063f8
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 9 00:53:03 2011 +0200
| | 
| |     Add the *_doxygen.i files to the modular modules build-deps
| | 
| | M	src/.generate_link_dependencies.py
| |     
* |   commit 5c3d0b9f32cc22a54ac54cd23c4ebb814366d7b2
|\ \  Merge: 95b4248 c8e2553
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 23:31:30 2011 +0200
| | | 
| | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | |    
| * | commit c8e2553c4e3928fa976f900368b71e484a1e2553
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 9 01:34:55 2011 +0530
| | | 
| | |     Typo fix.
| | | 
| | | M	src/libshogun/lib/AsciiFile.cpp
| | |    
| * | commit 1a80db6f361f2ffbb463bc5ffacc8c4d0084340a
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 9 01:31:33 2011 +0530
| | | 
| | |     Fixed file seeking in getline()
| | | 
| | | M	src/libshogun/lib/AsciiFile.cpp
| | |      
* | |   commit 95b4248265e5290610bc6d2ba7ec5181229030a8
|\ \ \  Merge: 2520983 9dbe4c3
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Wed Jun 8 23:29:18 2011 +0200
| | |   
| | |       Merge branch 'master' of git://github.com/karlnapf/shogun
| | |    
| * | commit 9dbe4c37aa78d310c89d17d347fac0fba59f8bde
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:57:19 2011 +0200
| | | 
| | |     Initial version of an implementation of a splitting scheme
| | | 
| | | A	src/libshogun/evaluation/StratifiedCrossValidation.cpp
| | | A	src/libshogun/evaluation/StratifiedCrossValidation.h
| | |    
| * | commit 531dbe65a5a5ddb2e91381b870aec27ee04904b7
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:56:56 2011 +0200
| | | 
| | |     Initial version of abstract base class for different splitting schemes
| | | 
| | | A	src/libshogun/evaluation/SplittingStrategy.cpp
| | | A	src/libshogun/evaluation/SplittingStrategy.h
| | |    
| * | commit a86147bc204a07e4249fd679618ee173639f3208
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Wed Jun 8 20:56:21 2011 +0200
| | | 
| | |     added shuffle method
| | | 
| | | M	src/libshogun/base/DynArray.h
| | |    
* | | commit 2520983c4fa16ee28f067d4c03631438bcf2c01f
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 8 19:21:03 2011 +0400
| | | 
| | |     Cleaned and renamed LLE to LocallyLinearEmbedding
| | | 
| | | D	src/libshogun/preprocessor/LLE.cpp
| | | D	src/libshogun/preprocessor/LLE.h
| | | A	src/libshogun/preprocessor/LocallyLinearEmbedding.cpp
| | | A	src/libshogun/preprocessor/LocallyLinearEmbedding.h
| | | M	src/libshogun/preprocessor/Preprocessor.h
| | | D	src/modular/PreProc.i
| | |    
* | | commit d6a755c397737074a1e1ae4304c50b7b158058ea
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Jun 8 19:13:27 2011 +0400
| | | 
| | |     Cleaning for LLE
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit d6b435129b76766fae02a4279d61134db676abcd
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Fri Jun 3 01:47:28 2011 +0400
| | | 
| | |     Some cleaning of CLLE
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit 0fe0c3a9410b0b0aeff154da37af0790e9cee83e
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon May 30 18:25:58 2011 +0400
| | | 
| | |     Moved routines into apply* function
| | | 
| | | M	src/libshogun/preprocessor/LLE.cpp
| | | M	src/libshogun/preprocessor/LLE.h
| | |    
* | | commit f3cae6ba885e7b60621fa218d42471b37fca2348
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon May 30 18:25:19 2011 +0400
| | | 
| | |     Re-added LLE to modular interface
| | | 
| | | D	src/libshogun/preproc/LLE.cpp
| | | D	src/libshogun/preproc/LLE.h
| | | A	src/libshogun/preprocessor/LLE.cpp
| | | A	src/libshogun/preprocessor/LLE.h
| | | M	src/modular/Preprocessor.i
| | |    
* | | commit cf4b35c0d611cd28bac3a890a9f7cb96689a89d8
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun May 29 16:48:00 2011 +0400
| | | 
| | |     Merged
| | | 
| | | M	src/modular/Preprocessor.i
| | | M	src/modular/Preprocessor_includes.i
| | |    
* | | commit c933add66080f8e3eb44eaf7ca5c8c98804e3d69
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sun May 29 14:52:21 2011 +0400
| | | 
| | |     Some fixes for LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 6e699a8c8ab393e8a0c7221a7392e3a0fae497e1
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 28 17:20:37 2011 +0400
| | | 
| | |     Fixed some routines in LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit ea1506db0a061e78b4b81a131e52b724cb9638a6
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 14 23:49:53 2011 +0400
| | | 
| | |     Cleaned LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 8bb2582014744c5cb675d5a92cfc8392bfa440be
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 14 00:47:00 2011 +0400
| | | 
| | |     Added eigenproblem routines to LLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 3cde6297265e13cd59dcf9f5015d4b3ae6ba1703
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed May 11 03:29:03 2011 +0400
| | | 
| | |     Added weight calculation routines to CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 5e1b6b494d46b7f3010fc16b722db39c3c5a5f97
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue May 10 01:33:21 2011 +0400
| | | 
| | |     Some more addition to draft of CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | |    
* | | commit 258b48878485e3763506611bd11a79e22cedc54b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 7 19:22:13 2011 +0400
| | | 
| | |     Added some routines to draft of CLLE
| | | 
| | | M	src/libshogun/preproc/LLE.cpp
| | | M	src/libshogun/preproc/LLE.h
| | |    
* | | commit 436245db101bcab2e43734daa855d11bebb9c431
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Sat May 7 19:13:06 2011 +0400
| | | 
| | |     Added CLLE to modular interface
| | | 
| | | A	src/modular/PreProc.i
| | |    
* | | commit 4518b1ff9e0b7c633bbe62b2fd56ca67dbe32625
|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |   Date:   Mon May 2 16:11:14 2011 +0400
| |   
| |       Added draft of LLE
| |   
| |   A	src/libshogun/preproc/LLE.cpp
| |   A	src/libshogun/preproc/LLE.h
| |     
* |   commit 400887873127d22e6af4ff51ef108958295b1021
|\ \  Merge: 8100b1c d6a2769
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 17:02:59 2011 +0200
| | | 
| | |     Merge branch 'streaming' of git://github.com/frx/shogun
| | |    
| * | commit d6a27699ed776bec538f07dd728c3c900e1b4963
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Wed Jun 8 20:24:12 2011 +0530
| | | 
| | |     Changed getline() to static, corrected call to getline in StreamingFile
| | | 
| | | M	src/libshogun/lib/AsciiFile.h
| | | M	src/libshogun/lib/StreamingFile.cpp
| | |      
| * |   commit 1fe555955c9ccdcd14268202d3cce1f556ebd946
| |\ \  Merge: db298dd 911a4db
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jun 8 20:22:53 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
| * | | commit db298dda4ec33087993d2cb41a5101be7c156948
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Wed Jun 8 18:39:38 2011 +0530
| | | | 
| | | |     Added getline() and getdelim() functions for OS X support.
| | | | 
| | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | M	src/libshogun/lib/AsciiFile.h
| | | |       
* | | |   commit 8100b1c440e80a812d10e2a5fc36ecc4579b40ae
|\ \ \ \  Merge: 911a4db 1664147
| |_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | |   Date:   Wed Jun 8 17:01:26 2011 +0200
| | | |   
| | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | |     
| * | | commit 16641477312c2e7821aa8128af855b7fc06c4020
| |/ /  Author: Baozeng Ding <sploving1@gmail.com>
| | |   Date:   Wed Jun 8 22:10:13 2011 +0800
| | |   
| | |       add jblas vector support
| | |   
| | |   M	src/java_modular/swig_typemaps.i
| | |    
* | | commit 911a4db6ee959d7eb6d7dcb82dac9d72faf4be35
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Jun 8 16:49:51 2011 +0200
| | | 
| | |     fix the java examples
| | | 
| | | M	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
| | | M	examples/undocumented/java_modular/MatrixTest.java
| | |    
* | | commit 046c6bf4e6b60ddb673f080de3b250b26823384b
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Jun 8 16:45:51 2011 +0200
| |   
| |       use %import to make other data types known to swig
| |       
| |       To this end we need to introduce *_includes.i for the respective
| |       includes that can then be re-used and %included.
| |       
| |       For example for Features we put includes in Features_includes.i
| |       and issue in Features.i a %include "Features_includes.i".
| |       
| |       The Kernel module needs features and thus make them known. So we need to
| |       
| |       %include "Features_includes.i" /* to include the C/C++ headers */
| |       %import "Features.i" /* to make the data types known to swig */
| |   
| |   M	src/modular/Classifier.i
| |   A	src/modular/Classifier_includes.i
| |   M	src/modular/Clustering.i
| |   A	src/modular/Clustering_includes.i
| |   M	src/modular/Distance.i
| |   A	src/modular/Distance_includes.i
| |   M	src/modular/Distribution.i
| |   A	src/modular/Distribution_includes.i
| |   M	src/modular/Evaluation.i
| |   A	src/modular/Evaluation_includes.i
| |   M	src/modular/Features.i
| |   A	src/modular/Features_includes.i
| |   M	src/modular/Kernel.i
| |   A	src/modular/Kernel_includes.i
| |   M	src/modular/Library.i
| |   A	src/modular/Library_includes.i
| |   M	src/modular/Preprocessor.i
| |   A	src/modular/Preprocessor_includes.i
| |   M	src/modular/Regression.i
| |   A	src/modular/Regression_includes.i
| |   M	src/modular/Structure.i
| |   A	src/modular/Structure_includes.i
| |   
* | commit 10af48927638ef2a3ab58ba12fda8fc66baeeaed
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 8 00:29:42 2011 +0200
| | 
| |     add SGVector based constructor
| | 
| | M	src/libshogun/features/Labels.h
| |   
* | commit 5d0f71bc43b82b36e3480e1e7099ba2eda228f5f
|/  Author: Baozeng Ding <sploving1@gmail.com>
|   Date:   Tue Jun 7 22:38:10 2011 +0800
|   
|       add ClassifierLibsvmMinimalModular exmaple
|   
|   A	examples/undocumented/java_modular/ClassifierLibsvmMinimalModular.java
|  
* commit 54230de98bc567d838b3b13411624b4780a9a4f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 21:45:24 2011 +0200
| 
|     Support all datatypes from SGDataType in new python_modular typemaps.
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 3856f733762990fa8023a7ae5e0431916cc3098d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 10:22:40 2011 +0200
| 
|     ifdev HAVE_LAPACK in MDS
| 
| M	src/libshogun/preprocessor/ClassicMDS.cpp
|  
* commit 37508ab1f6f3d490d776e6306b53c4c219414652
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 02:13:44 2011 +0200
| 
|     add some classpath magic
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 8b506342659f22dd16f075b98cf66cf7c4f2c5aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 6 01:40:17 2011 +0200
| 
|     put shogun into org.shogun java package, fix configure / make distclean
|     targets and adjust java examples
| 
| M	examples/undocumented/java_modular/MatrixTest.java
| M	examples/undocumented/java_modular/VectorTest.java
| M	examples/undocumented/java_modular/minimal_test.java
| M	src/Makefile.template
| M	src/configure
| M	src/java_modular/build.xml
|    
*   commit c2edc9cfaa09febf871a7b1c5e15d6cd407240a5
|\  Merge: 64862f4 1853266
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jun 5 23:32:39 2011 +0200
| | 
| |     Merge branch 'streaming' of git://github.com/frx/shogun
| |   
| * commit 18532660f482c88a94ed484d4ff12012e7999de5
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 08:01:53 2011 +0530
| | 
| |     Fixed a typo in parser.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| |   
| * commit 9074dc893a18f6c0997082ff0d44dbbc7eb093c2
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 07:51:19 2011 +0530
| | 
| |     Fixed indentation in parser, buffer code.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| | M	src/libshogun/features/StreamingFeatures.h
| | M	src/libshogun/lib/buffer.cpp
| | M	src/libshogun/lib/buffer.h
| | M	src/libshogun/lib/parser.cpp
| | M	src/libshogun/lib/parser.h
| |   
| * commit 01e673bb447ffd242d40114cb706d73c495ebb9d
| | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | Date:   Mon Jun 6 07:02:47 2011 +0530
| | 
| |     Updated most of the streaming features code to use SGVector.
| | 
| | M	src/libshogun/features/StreamingFeatures.cpp
| | M	src/libshogun/features/StreamingFeatures.h
| | M	src/libshogun/lib/buffer.cpp
| | M	src/libshogun/lib/buffer.h
| | M	src/libshogun/lib/parser.cpp
| | M	src/libshogun/lib/parser.h
| |     
| *   commit d3e7adb9d9708af0eea7d1585a8e8ec25dd70d90
| |\  Merge: d7a7447 07b707b
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Mon Jun 6 07:01:39 2011 +0530
| | | 
| | |     Merge remote-tracking branch 'upstream/master' into streaming
| | |    
| * | commit d7a7447bd2c86df50ba0bc1f8c464f399bce8691
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Thu Jun 2 09:12:47 2011 +0530
| | | 
| | |     Class-based buffer for the parser, not complete.
| | | 
| | | M	src/libshogun/features/StreamingFeatures.cpp
| | | M	src/libshogun/features/StreamingFeatures.h
| | | M	src/libshogun/lib/buffer.cpp
| | | M	src/libshogun/lib/buffer.h
| | | M	src/libshogun/lib/parser.cpp
| | | M	src/libshogun/lib/parser.h
| | |      
| * |   commit 486b84fa9811a498af88473aebc0e536e10ac937
| |\ \  Merge: 56951b5 95e0dad
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu Jun 2 09:11:45 2011 +0530
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master' into streaming
| | | |     
| * | | commit 56951b52821617664f32d0326a980e3264d136d0
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:22 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | D	src/libshogun/lib/buffer.cpp~
| | | |     
| * | | commit 90a8c5560aabd80167a8e6164f5178458bdfdfc3
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:14 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | A	src/libshogun/lib/buffer.cpp
| | | | A	src/libshogun/lib/buffer.cpp~
| | | | A	src/libshogun/lib/buffer.h
| | | |     
| * | | commit d373ffea9cf2aab55f46c8136c9d820bc9aa3352
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Thu May 26 19:48:08 2011 +0530
| | | | 
| | | |     Initial commit of parser using a buffer class.
| | | | 
| | | | M	src/libshogun/lib/parser.cpp
| | | | M	src/libshogun/lib/parser.h
| | | |       
| * | |   commit 3a54a788cc7cdd0219a1cc31c2c0524cdb7369a7
| |\ \ \  Merge: 6b5a1d5 02cc0f9
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Thu May 26 19:46:37 2011 +0530
| | | | | 
| | | | |     Merging with master, reverting parser changes.
| | | | |      
| * | | | commit 6b5a1d53a730fb895eaa28286c16b75fa9805191
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon May 2 02:07:31 2011 +0530
| | | | | 
| | | | |     Eliminated explicit casting of examples by introducing separate variables for labelled and unlabelled egs.
| | | | | 
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |        
| * | | |   commit 337c7501b74915c707ce7ca1547d2710ffff334f
| |\ \ \ \  Merge: 8dd6855 ecbc74b
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Mon May 2 02:06:23 2011 +0530
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | |       
| * | | | | commit 8dd6855744c1a627df9fd07e28c6192c97c8aba4
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun May 1 05:21:50 2011 +0530
| | | | | | 
| | | | | |     Fixed problem in proper assignment of feature vectors.
| | | | | | 
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | |       
| * | | | | commit 2e7d0c1e02389926128b5f6296413a09aa485074
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Sun May 1 05:17:54 2011 +0530
| | | | | | 
| | | | | |     Made separate buffer space for feature vectors. Now uses new instead of malloc.
| | | | | | 
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | M	src/libshogun/lib/parser.h
| | | | | |         
| * | | | |   commit 38ba7c1ce3af844a1ff1f3208dc8b300797e3e53
| |\ \ \ \ \  Merge: 1a930c3 046e59e
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Sun May 1 00:43:37 2011 +0530
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | |          
| * | | | | |   commit 1a930c3ba3f87e6abf9cc18b2bbba43c3da2ef9f
| |\ \ \ \ \ \  Merge: 38d7b67 9ce80cb
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Thu Apr 28 02:21:01 2011 +0530
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | |         
* | | | | | | | commit 64862f40c31c6439cc68b215eaf50e5839dfef46
| |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | |   Date:   Sun Jun 5 23:31:30 2011 +0200
| | | | | | |   
| | | | | | |       don't create any directory on configure
| | | | | | |   
| | | | | | |   M	src/configure
| | | | | | |        
* | | | | | | commit 07b707bca3f6f56797a783f2004d99b38c054528
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Sat Jun 4 23:44:16 2011 +0200
| | | | | | | 
| | | | | | |     Potentially work around the java_modular compile error.
| | | | | | |     
| | | | | | |     This commit *may* again cause issues with labels not being known in classifiers or
| | | | | | |     kernels respectively in preprocs.
| | | | | | | 
| | | | | | | M	src/libshogun/machine/LinearMachine.h
| | | | | | | M	src/libshogun/preprocessor/KernelPCACut.h
| | | | | | | M	src/modular/Classifier.i
| | | | | | | M	src/modular/Preprocessor.i
| | | | | | |        
* | | | | | | commit aba45d027c602157e22578b67d9972d1cf84cba3
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Fri Jun 3 23:53:28 2011 +0400
| | | | | | | 
| | | | | | |     Cleaned and fixed CClassicMDS
| | | | | | | 
| | | | | | | M	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | | | M	src/libshogun/preprocessor/ClassicMDS.h
| | | | | | | M	src/libshogun/preprocessor/Preprocessor.h
| | | | | | |        
* | | | | | | commit 88443c93321ad4bdfbbd73b2e095963dedfb1e9f
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Fri Jun 3 02:32:39 2011 +0400
| | | | | | | 
| | | | | | |     Adapted CClassicMDS to new structure
| | | | | | | 
| | | | | | | D	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | | D	src/libshogun/preproc/ClassicMDS.h
| | | | | | | A	src/libshogun/preprocessor/ClassicMDS.cpp
| | | | | | | A	src/libshogun/preprocessor/ClassicMDS.h
| | | | | | | M	src/modular/Preprocessor.i
| | | | | | |          
* | | | | | |   commit 6e1583e729631950e0c2b2e7f0a666f8be3ff674
|\ \ \ \ \ \ \  Merge: 37095f3 2aece7c
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Fri Jun 3 01:49:59 2011 +0400
| | | | | | | | 
| | | | | | | |     Merged upstream
| | | | | | | |           
| * | | | | | |   commit 2aece7cb351afd5346d7ab9518b66a12599549c8
| |\ \ \ \ \ \ \  Merge: 69dd074 0449ad7
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Thu Jun 2 18:26:04 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | | | | | | | |          
| | * | | | | | | commit 0449ad7244cf539e85c5da372ae5f1db9659fb46
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Thu Jun 2 11:46:17 2011 -0400
| | | | | | | | | 
| | | | | | | | |     edited whitespace for src/configure & src/ruby_modular/swig_typemaps.i  also removed LD_LIBRARY_PATH from
| | | | | | | | |     src/configure as it's an environment variable, not a compile option (i be we tall did)
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit e4542e02414de0bf963e666e9775ea2f24142d30
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Thu Jun 2 06:18:25 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated LD_LIBRARY_PATH in configure script for ruby & changed ruby typemaps so they also get the length of a string.
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit c04cf61eaed2415f455e4ab331e47e78b7b1cab8
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Tue May 31 23:21:33 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated config script to handle libruby<VER>*.so* & libruby.so* naming conventions
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | |          
| | * | | | | | | commit 9eae00fa26018fc686a0e0cf122017d3bfd2d5ff
| | | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | | Date:   Tue May 31 21:33:16 2011 -0400
| | | | | | | | | 
| | | | | | | | |     updated configure script & made the ruby typemaps 1.9 compatible
| | | | | | | | | 
| | | | | | | | | M	src/configure
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| * | | | | | | | commit 69dd0744214a99b89e54e9d194789ebf71a06845
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Thu Jun 2 16:36:58 2011 +0200
| | | | | | | | | 
| | | | | | | | |     fix renames CMachine -> Machine instead of nonexistent CClassifier
| | | | | | | | | 
| | | | | | | | | M	src/modular/Classifier.i
| | | | | | | | | M	src/modular/Regression.i
| | | | | | | | |          
| * | | | | | | | commit 0f96560a005fb838c229a4cc2ecc0aa966c9f051
| | |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | |   Date:   Thu Jun 2 16:12:06 2011 +0200
| | | | | | | |   
| | | | | | | |       don't make apply an inline function
| | | | | | | |   
| | | | | | | |   M	src/libshogun/machine/LinearMachine.h
| | | | | | | |           
| * | | | | | |   commit 95e0dad0568b00b3721d2f0f69b9eec44414dea6
| |\ \ \ \ \ \ \  Merge: e0842b9 8a3882b
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Jun 1 20:00:32 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | | |          
| | * | | | | | | commit 8a3882b7f9137ae438856a84e678aff304eeb380
| | |/ / / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | |   Date:   Wed Jun 1 11:25:58 2011 +0800
| | | | | | | |   
| | | | | | | |       fix stringlist typemap bug and create shogun dir in configure file
| | | | | | | |   
| | | | | | | |   M	src/configure
| | | | | | | |   M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit e0842b989495c99b328bf13e5a8d72f4a958c7ca
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 15:09:33 2011 +0200
| | | | | | | | 
| | | | | | | |     added example of how to apply a set of CParameterCombination trees to a support vector machine
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | | A	examples/undocumented/libshogun/modelselection_apply_parameter_tree.cpp
| | | | | | | |         
| * | | | | | | commit 084f0ec500485e0fd9e71ebd7d7e148798a90fd5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 15:08:26 2011 +0200
| | | | | | | | 
| | | | | | | |     added some comments for using this class
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 0c0b73bae2f0a158f3590c4e18579524bcc58fcb
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 14:12:29 2011 +0200
| | | | | | | | 
| | | | | | | |     fixed a bug where wrong parameter were tried to
| | | | | | | |     cody style
| | | | | | | |     added adress output in print
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit 3c1f3b98b5ad967e7f6ef78dcade3e43ed326929
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 14:03:14 2011 +0200
| | | | | | | | 
| | | | | | | |     code cleanup and another check for same parameters that are not to be copied
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit 7179e1c3be32642a669ace678f1d10b4c43361e2
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 13:03:36 2011 +0200
| | | | | | | | 
| | | | | | | |     avoid to REF if adresses are the same in set_from_parameters
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit c237d54347c8b80a5a01b649984fbc62ab8560ac
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:32:43 2011 +0200
| | | | | | | | 
| | | | | | | |     reverts "in set_from_parameters, only copy data if it is acutally different"
| | | | | | | |     the check is now moved to the correct place, before memcpy call
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit c3a4bbe984116d00b853efc2cd444aaa5405d9f9
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:18:59 2011 +0200
| | | | | | | | 
| | | | | | | |     in set_from_parameters, only copy data if it is acutally different
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit e96e6c27c5edb5fa3ef5a55f233cd5aaa864dddd
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 12:05:10 2011 +0200
| | | | | | | | 
| | | | | | | |     REF before UNREF in set_from_aprameters to prevent deletion of CSGObjects in case the new one is the same as the old one
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |         
| * | | | | | | commit b25fd92ea7062302d8997ccc624ff1bc573f5de5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Wed Jun 1 10:38:18 2011 +0200
| | | | | | | | 
| | | | | | | |     fixed bug in set_from_parameters, where wrong parameter is set if parameter with desired name does not exist
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | |           
| * | | | | | |   commit 764290b270c35b367a1dfd4ce926c1385370f05c
| |\ \ \ \ \ \ \  Merge: d71f5c6 cf2f5b2
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Wed Jun 1 10:37:00 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit cf2f5b27f831bd56cc8a4dd522ced2c58aca65e4
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Jun 1 00:31:10 2011 +0200
| | | | | | | | 
| | | | | | | |     add jblas / ujmp detection (assumes that the jblas.jar / ujmp.jar are
| | | | | | | |     		either in /usr/share/java/ or in CLASSPATH)
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |         
| | * | | | | | commit e0c6f7ad66475bddd3f0de9831f87ffb9615b147
| | | | | | | | Author: Daniel Matthew Korn <daniel.m.korn@gmail.com>
| | | | | | | | Date:   Tue May 31 10:32:07 2011 -0700
| | | | | | | | 
| | | | | | | |     Added the SGMatrix Typemap
| | | | | | | | 
| | | | | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit d71f5c6495a0ca818fa7677051cd6c0ce06ff8bb
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:56:10 2011 +0200
| | | | | | | | 
| | | | | | | |     initial draft for applying CParameterCombination trees to actual parameter instances
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 9f7d5e30364e6dcbf3be618691feed49f59c86a5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:12:51 2011 +0200
| | | | | | | | 
| | | | | | | |     applied interface changes of CModelSelectionParameters
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | | | | |         
| * | | | | | | commit ae12dae2ea7393aa8284ac2846f81ba8e30ffd5b
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:07:08 2011 +0200
| | | | | | | | 
| | | | | | | |     comment format style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 4bbdc2f7fa3a48ad177063d50704ca60966aa290
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:06:47 2011 +0200
| | | | | | | | 
| | | | | | | |     print method now shows node name in case of CSGObject node
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit 37ef3aeea050eaff8ff07835cd6aad71f3b53db7
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 17:03:27 2011 +0200
| | | | | | | | 
| | | | | | | |     -a CSGObject node now has a name
| | | | | | | |     -when constructing CParameterCombination instances with CSGObjects, names of the node will now be the node name of the current CModelSelectionParameter node
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit ed4afcfc8a115cadf02d3e1707a4a6196a20df42
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:19:38 2011 +0200
| | | | | | | | 
| | | | | | | |     removed friend class, not necessary anymore
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit 62e1bc71810a3d6124b7cb1b58113fd29de044e8
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:11:12 2011 +0200
| | | | | | | | 
| | | | | | | |     removed std-includes
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | | | | |         
| * | | | | | | commit 98a95bc67369da375d6370ae585497e5e9a169d3
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:04:39 2011 +0200
| | | | | | | | 
| | | | | | | |     coding style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | |         
| * | | | | | | commit ff9f5e1fc9d6f895aea32a578b817102a4d14cc2
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 13:03:32 2011 +0200
| | | | | | | | 
| | | | | | | |     changed char* to const char* to prevent gcc warnings
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit c62e26c5a262b2f68836c3fcbd980825a8379295
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 31 12:21:27 2011 +0200
| | | | | | | | 
| | | | | | | |     code style
| | | | | | | | 
| | | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 1922f8e2777ebb96377e9edc5e9a460b34ad12b4
| |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Tue May 31 12:18:48 2011 +0200
| | | | | | |   
| | | | | | |       renamed childs to children
| | | | | | |   
| | | | | | |   M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | |   M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | |   M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | |        
| * | | | | | commit 9a6a36e2486db648f80312f9d6b995f2f4885316
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:54:19 2011 +0200
| | | | | | | 
| | | | | | |     forgot this file. initial working version of parameter specification
| | | | | | | 
| | | | | | | A	src/libshogun/modelselection/ParameterCombination.cpp
| | | | | | |        
| * | | | | | commit a2d78d36736cb9087461ca963e7d9c9f1cc13d68
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:46:13 2011 +0200
| | | | | | | 
| | | | | | |     made method get_parameter public (needed for printing methods of ParameterCombination)
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
| * | | | | | commit 17fac363c58f05c0ab24ab4a1f267d50027bcfa0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:43:39 2011 +0200
| | | | | | | 
| | | | | | |     -made most methods public
| | | | | | |     -name change m_name to m_node_name
| | | | | | | 
| | | | | | | M	src/libshogun/modelselection/ParameterCombination.h
| | | | | | |        
| * | | | | | commit 17f9b064b08ef3dfa275c1d403ac0df9f629445f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:42:15 2011 +0200
| | | | | | | 
| | | | | | |     -added basic check if it is legal to append a child
| | | | | | |     -renamed m_name to m_node_name to avoid confusion with get_name() method
| | | | | | | 
| | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | M	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | |        
| * | | | | | commit 30096b91b4fde2393ecf2f416a8d2179abb85617
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:41:03 2011 +0200
| | | | | | | 
| | | | | | |     added two methods to add parameters from another parameter instance and to check whether a parameter with a certain name is included
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
| * | | | | | commit 4bdbec9040e2652573d022a86a0ab48beca6d1c4
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:39:27 2011 +0200
| | | | | | | 
| | | | | | |     corrected name of a delta parameter
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | | | | |        
| * | | | | | commit 3deb1cc7012f8b880cb106deef6b2eed1639a2f0
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:39:06 2011 +0200
| | | | | | | 
| | | | | | |     added new example to makefile
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | |        
| * | | | | | commit da0ed76217447d737bd0c1e9a2b5bdc7023f5f5e
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 30 20:37:48 2011 +0200
| | | | | | | 
| | | | | | |     added example for exracting parameter combinations of a CModelSelectionParameters tree
| | | | | | | 
| | | | | | | A	examples/undocumented/libshogun/modelselection_parameter_tree.cpp
| | | | | | |          
| * | | | | |   commit c9d0b0e3f382706e3f4905b3afe9192d5b59d00b
| |\ \ \ \ \ \  Merge: 8b12d74 66c3ce3
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:44:48 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 66c3ce3e2433d9463bda7eadf3767e006ed21c14
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Mon May 30 15:04:52 2011 +0200
| | | | | | | | 
| | | | | | | |     rename classify / classify_example to more generic apply() - to be used
| | | | | | | |     in all machines. adjust examples accordingly.
| | | | | | | | 
| | | | | | | | M	examples/undocumented/libshogun/classifier_libsvm.cpp
| | | | | | | | M	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| | | | | | | | M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| | | | | | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | | | M	examples/undocumented/octave_modular/classifier_domainadaptationsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_gmnpsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_gpbtsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_knn_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_lda_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_liblinear_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_libsvmoneclass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_mpdsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_perceptron_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_subgradientsvm_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmlin_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmocas_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/kernel_histogramword_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_krr_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_libsvr_modular.m
| | | | | | | | M	examples/undocumented/octave_modular/regression_svrlight_modular.m
| | | | | | | | M	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_knn_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_lda_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| | | | | | | | M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/mkl_binclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_krr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_libsvr_modular.py
| | | | | | | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | | | | | | M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_knn_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_lda_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_liblinear_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_perceptron_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmlight_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmlin_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| | | | | | | | M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
| | | | | | | | M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | | | | M	src/libshogun/classifier/KNN.cpp
| | | | | | | | M	src/libshogun/classifier/KNN.h
| | | | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/SVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.h
| | | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | | M	src/libshogun/machine/DistanceMachine.h
| | | | | | | | M	src/libshogun/machine/KernelMachine.cpp
| | | | | | | | M	src/libshogun/machine/KernelMachine.h
| | | | | | | | M	src/libshogun/machine/LinearMachine.cpp
| | | | | | | | M	src/libshogun/machine/LinearMachine.h
| | | | | | | | M	src/libshogun/machine/Machine.h
| | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | M	src/libshogunui/GUIPluginEstimate.cpp
| | | | | | | | M	src/libshogunui/GUIPluginEstimate.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | |         
| * | | | | | | commit 8b12d744dbf10eb2c6a635f7101053759d074fda
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:44:17 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version of a tree structure to hold combinations of parameters for model selection.
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ParameterCombination.h
| | | | | | | |         
| * | | | | | | commit a0412d9f400dce3fde8119113233029f2b0f22a5
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:43:11 2011 +0200
| | | | | | | | 
| | | | | | | |     finally: initial (working) version of tree structure to specify parameters and their ranges and relations for model selection
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit c61bde11bf1205c90b29576fe2c1b33f2e99ba8b
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:41:08 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial (working) version of the tree structure to specify parameters and their ranges for model selection."
| | | | | | | |     
| | | | | | | |     This reverts commit 5053f5b7b5ef6ea1cc33a46caa68fd1d9681a2d1.
| | | | | | | |     git mistake again :(
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 5e664690575de3b3d004d928931edb9c239d6942
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:40:42 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial working version"
| | | | | | | |     
| | | | | | | |     This reverts commit 244f7879a95f985f9e1a8c8c1b5865297e741dfd.
| | | | | | | |     git mistake again :(
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 244f7879a95f985f9e1a8c8c1b5865297e741dfd
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:38:34 2011 +0200
| | | | | | | | 
| | | | | | | |     initial working version
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.h
| | | | | | | |         
| * | | | | | | commit 5053f5b7b5ef6ea1cc33a46caa68fd1d9681a2d1
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:37:09 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version of the tree structure to specify parameters and their ranges for model selection.
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelectionParameters.cpp
| | | | | | | |         
| * | | | | | | commit 70af5479b18810b2f0f4d8a3cfaa1bb71e663996
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:36:29 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "initial (working) version. class to specify parameters and ranges. Possibility to generate combinations from it"
| | | | | | | |     Wrong file.
| | | | | | | |     This reverts commit e28c442998d45132f9b2427b20f3d62339ad8006.
| | | | | | | | 
| | | | | | | | D	src/libshogun/modelselection/ModelSelection.cpp
| | | | | | | | D	src/libshogun/modelselection/ModelSelection.h
| | | | | | | |         
| * | | | | | | commit e28c442998d45132f9b2427b20f3d62339ad8006
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Mon May 30 19:03:03 2011 +0200
| | | | | | | | 
| | | | | | | |     initial (working) version. class to specify parameters and ranges. Possibility to generate combinations from it
| | | | | | | | 
| | | | | | | | A	src/libshogun/modelselection/ModelSelection.cpp
| | | | | | | | A	src/libshogun/modelselection/ModelSelection.h
| | | | | | | |           
| * | | | | | |   commit 0f166332506a18d4eacd381ed9dfdc1986334e20
| |\ \ \ \ \ \ \  Merge: 14b5e06 6688b5c
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Mon May 30 10:36:30 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 6688b5ca7d4487407f0c4171811f8b4c792e6834
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Sun May 29 18:57:46 2011 +0800
| | | | | | | | 
| | | | | | | |     use lua_objlen to count table size, improve error handing, and add lua vector/matrix test
| | | | | | | | 
| | | | | | | | A	examples/undocumented/lua_modular/MatrixTest.lua
| | | | | | | | A	examples/undocumented/lua_modular/VectorTest.lua
| | | | | | | | M	src/lua_modular/shogun.lua
| | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 54150e818b4527321cdd74d5a018324ff8e7e305
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Sun May 29 11:39:59 2011 +0200
| | | | | | | | 
| | | | | | | |     Transistion: rename CClassifier to CMachine
| | | | | | | |     
| | | | | | | |     correspondingly rename CLinearClassifier -> CLinearMachine
| | | | | | | |     and move them to the machine/ subdirectory
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | M	src/libshogun/classifier/AveragedPerceptron.h
| | | | | | | | D	src/libshogun/classifier/Classifier.cpp
| | | | | | | | D	src/libshogun/classifier/Classifier.h
| | | | | | | | D	src/libshogun/classifier/DistanceMachine.cpp
| | | | | | | | D	src/libshogun/classifier/DistanceMachine.h
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | | | | M	src/libshogun/classifier/KNN.h
| | | | | | | | D	src/libshogun/classifier/KernelMachine.cpp
| | | | | | | | D	src/libshogun/classifier/KernelMachine.h
| | | | | | | | M	src/libshogun/classifier/KernelPerceptron.h
| | | | | | | | M	src/libshogun/classifier/LDA.cpp
| | | | | | | | M	src/libshogun/classifier/LDA.h
| | | | | | | | M	src/libshogun/classifier/LPBoost.h
| | | | | | | | M	src/libshogun/classifier/LPM.h
| | | | | | | | D	src/libshogun/classifier/LinearClassifier.cpp
| | | | | | | | D	src/libshogun/classifier/LinearClassifier.h
| | | | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | | | | M	src/libshogun/classifier/Perceptron.h
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.cpp
| | | | | | | | M	src/libshogun/classifier/PluginEstimate.h
| | | | | | | | M	src/libshogun/classifier/SubGradientLPM.cpp
| | | | | | | | M	src/libshogun/classifier/SubGradientLPM.h
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/LibLinear.cpp
| | | | | | | | M	src/libshogun/classifier/svm/LibLinear.h
| | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | M	src/libshogun/classifier/svm/SVM.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMLight.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLightOneClass.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMLin.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMLin.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMOcas.h
| | | | | | | | M	src/libshogun/classifier/svm/SVMSGD.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SVMSGD.h
| | | | | | | | M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| | | | | | | | M	src/libshogun/classifier/svm/SubGradientSVM.h
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| | | | | | | | M	src/libshogun/classifier/svm/WDSVMOcas.h
| | | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | | M	src/libshogun/kernel/LinearKernel.h
| | | | | | | | M	src/libshogun/kernel/SplineKernel.h
| | | | | | | | A	src/libshogun/machine/DistanceMachine.cpp
| | | | | | | | A	src/libshogun/machine/DistanceMachine.h
| | | | | | | | A	src/libshogun/machine/KernelMachine.cpp
| | | | | | | | A	src/libshogun/machine/KernelMachine.h
| | | | | | | | A	src/libshogun/machine/LinearMachine.cpp
| | | | | | | | A	src/libshogun/machine/LinearMachine.h
| | | | | | | | A	src/libshogun/machine/Machine.cpp
| | | | | | | | A	src/libshogun/machine/Machine.h
| | | | | | | | M	src/libshogun/regression/KRR.h
| | | | | | | | M	src/libshogun/regression/svr/SVRLight.cpp
| | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | M	src/modular/Classifier.i
| | | | | | | | M	src/modular/Clustering.i
| | | | | | | | M	src/modular/Regression.i
| | | | | | | |         
| | * | | | | | commit 52ce59f262ac48a6becbcca1d73843740a83e4c8
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Sun May 29 00:24:51 2011 +0200
| | | | | | | | 
| | | | | | | |     rename preproc -> preprocessor
| | | | | | | | 
| | | | | | | | M	examples/descriptions/static/distance_canberraword.txt
| | | | | | | | M	examples/descriptions/static/distance_hammingword.txt
| | | | | | | | M	examples/descriptions/static/distance_manhattenword.txt
| | | | | | | | M	examples/undocumented/python_modular/distance_canberraword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_hammingword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| | | | | | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_normone_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| | | | | | | | M	examples/undocumented/python_modular/serialization_complex_example.py
| | | | | | | | M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| | | | | | | | M	src/.generate_link_dependencies.py
| | | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | | M	src/libshogun/features/Features.h
| | | | | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | | | D	src/libshogun/preproc/DecompressString.h
| | | | | | | | D	src/libshogun/preproc/KernelPCACut.cpp
| | | | | | | | D	src/libshogun/preproc/KernelPCACut.h
| | | | | | | | D	src/libshogun/preproc/LogPlusOne.cpp
| | | | | | | | D	src/libshogun/preproc/LogPlusOne.h
| | | | | | | | D	src/libshogun/preproc/NormDerivativeLem3.cpp
| | | | | | | | D	src/libshogun/preproc/NormDerivativeLem3.h
| | | | | | | | D	src/libshogun/preproc/NormOne.cpp
| | | | | | | | D	src/libshogun/preproc/NormOne.h
| | | | | | | | D	src/libshogun/preproc/PCACut.cpp
| | | | | | | | D	src/libshogun/preproc/PCACut.h
| | | | | | | | D	src/libshogun/preproc/PreProc.cpp
| | | | | | | | D	src/libshogun/preproc/PreProc.h
| | | | | | | | D	src/libshogun/preproc/PruneVarSubMean.cpp
| | | | | | | | D	src/libshogun/preproc/PruneVarSubMean.h
| | | | | | | | D	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | | | | | | | D	src/libshogun/preproc/RandomFourierGaussPreproc.h
| | | | | | | | D	src/libshogun/preproc/SimplePreProc.h
| | | | | | | | D	src/libshogun/preproc/SortUlongString.cpp
| | | | | | | | D	src/libshogun/preproc/SortUlongString.h
| | | | | | | | D	src/libshogun/preproc/SortWordString.cpp
| | | | | | | | D	src/libshogun/preproc/SortWordString.h
| | | | | | | | D	src/libshogun/preproc/SparsePreProc.h
| | | | | | | | D	src/libshogun/preproc/StringPreProc.h
| | | | | | | | A	src/libshogun/preprocessor/DecompressString.h
| | | | | | | | A	src/libshogun/preprocessor/KernelPCACut.cpp
| | | | | | | | A	src/libshogun/preprocessor/KernelPCACut.h
| | | | | | | | A	src/libshogun/preprocessor/LogPlusOne.cpp
| | | | | | | | A	src/libshogun/preprocessor/LogPlusOne.h
| | | | | | | | A	src/libshogun/preprocessor/NormDerivativeLem3.cpp
| | | | | | | | A	src/libshogun/preprocessor/NormDerivativeLem3.h
| | | | | | | | A	src/libshogun/preprocessor/NormOne.cpp
| | | | | | | | A	src/libshogun/preprocessor/NormOne.h
| | | | | | | | A	src/libshogun/preprocessor/PCACut.cpp
| | | | | | | | A	src/libshogun/preprocessor/PCACut.h
| | | | | | | | A	src/libshogun/preprocessor/Preprocessor.cpp
| | | | | | | | A	src/libshogun/preprocessor/Preprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/PruneVarSubMean.cpp
| | | | | | | | A	src/libshogun/preprocessor/PruneVarSubMean.h
| | | | | | | | A	src/libshogun/preprocessor/RandomFourierGaussPreproc.cpp
| | | | | | | | A	src/libshogun/preprocessor/RandomFourierGaussPreproc.h
| | | | | | | | A	src/libshogun/preprocessor/SimplePreprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/SortUlongString.cpp
| | | | | | | | A	src/libshogun/preprocessor/SortUlongString.h
| | | | | | | | A	src/libshogun/preprocessor/SortWordString.cpp
| | | | | | | | A	src/libshogun/preprocessor/SortWordString.h
| | | | | | | | A	src/libshogun/preprocessor/SparsePreprocessor.h
| | | | | | | | A	src/libshogun/preprocessor/StringPreprocessor.h
| | | | | | | | D	src/libshogunui/GUIPreProc.cpp
| | | | | | | | D	src/libshogunui/GUIPreProc.h
| | | | | | | | A	src/libshogunui/GUIPreprocessor.cpp
| | | | | | | | A	src/libshogunui/GUIPreprocessor.h
| | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | | | M	src/lua_modular/shogun.lua
| | | | | | | | D	src/modular/PreProc.doxy
| | | | | | | | D	src/modular/PreProc.i
| | | | | | | | A	src/modular/Preprocessor.doxy
| | | | | | | | A	src/modular/Preprocessor.i
| | | | | | | |         
| | * | | | | | commit 8381b60fe9d2cf004c019c943e711837b4ea6f7e
| | | |_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | |   Date:   Sat May 28 00:05:56 2011 +0200
| | | | | | |   
| | | | | | |       at least on debian based systems ruby libs are named libruby<VER>*.so*
| | | | | | |   
| | | | | | |   M	src/configure
| | | | | | |          
| | * | | | |   commit 02cc0f97880d3c5a405dc43abe08421ac2c4897e
| | |\ \ \ \ \  Merge: e3e7978 355fd30
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed May 25 22:45:48 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/serialhex/shogun
| | | | | | | |         
| | | * | | | | commit 355fd30767ba2fb204e18408febd47c070d0e6b6
| | | | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | | | Date:   Wed May 25 16:42:14 2011 -0400
| | | | | | | | 
| | | | | | | |     updated configure script to work with ruby 1.8 & 1.9
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |           
| | * | | | | |   commit e3e79789fd93c608800e27dd2677cc0c2b6f6991
| | |\ \ \ \ \ \  Merge: 0156394 bdcddac
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed May 25 22:39:51 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge branch 'patch-1' of git://github.com/dmkorn/shogun
| | | | | | | | |          
| | | * | | | | | commit bdcddace3af71b4cdf472a896ba97ff14e3f03e1
| | | | | | | | | Author: dmkorn <daniel.m.korn@gmail.com>
| | | | | | | | | Date:   Wed May 25 11:29:32 2011 -0700
| | | | | | | | | 
| | | | | | | | |     This is still not complete, more typemaps need to be written and run time testing needs to be performed.  However, this compiles through with no errors.
| | | | | | | | | 
| | | | | | | | | M	src/csharp_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 015639441752a98d5caa1e897d68e068cb221fc9
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:41:45 2011 +0800
| | | | | | | | | 
| | | | | | | | |     fix new SGTYPE() issue for java
| | | | | | | | | 
| | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit e2f4a6031aa961bb4218c6f0a10804d084c3d947
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:39:53 2011 +0800
| | | | | | | | | 
| | | | | | | | |     fix new SGTYPE() issue
| | | | | | | | | 
| | | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit d7f7604601a7692095cce35203f00dd8a8d659cb
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 19:38:31 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add stringlist support for ruby
| | | | | | | | | 
| | | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 5ba04f7394bbb9ea226d3a6a47044beb762e3681
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 15:44:34 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add setArrayRegion statement in stringlist typemap
| | | | | | | | | 
| | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 38c376626873ab359521155d6248ff1dfdafcc41
| | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | Date:   Wed May 25 15:36:53 2011 +0800
| | | | | | | | | 
| | | | | | | | |     add stringlist support
| | | | | | | | | 
| | | | | | | | | M	src/lua_modular/swig_typemaps.i
| | | | | | | | |          
| | * | | | | | | commit 9585b7f45294f18c8332071fb036893221a95d6b
| | |/ / / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | |   Date:   Wed May 25 14:04:24 2011 +0800
| | | | | | | |   
| | | | | | | |       add lua SGVector/SGMatrix support
| | | | | | | |   
| | | | | | | |   M	src/lua_modular/swig_typemaps.i
| | | | | | | |           
| * | | | | | |   commit 14b5e06445ead9670bf65b5449aac93039754808
| |\ \ \ \ \ \ \  Merge: b9e4f84 ba381a2
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Tue May 24 10:21:24 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit ba381a2a0fe10cd8af3065199d513a8bf244d2d7
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Mon May 23 19:45:10 2011 +0800
| | | | | | | | 
| | | | | | | |     remove init_shogun/exit_shogun
| | | | | | | | 
| | | | | | | | M	examples/undocumented/ruby_modular/MatrixTest.rb
| | | | | | | | M	examples/undocumented/ruby_modular/VectorTest.rb
| | | | | | | |         
| | * | | | | | commit 386b0cda1781e5295c801af921a19c077030eea4
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Mon May 23 14:42:25 2011 +0800
| | | | | | | | 
| | | | | | | |     add ruby matrix typemap support
| | | | | | | | 
| | | | | | | | A	examples/undocumented/ruby_modular/MatrixTest.rb
| | | | | | | | M	src/ruby_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 2341f5fc12f2382f17ffba8cf907ec441f9ef177
| | |/ / / / /  Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | |   Date:   Mon May 23 14:07:40 2011 +0800
| | | | | | |   
| | | | | | |       add ruby vector typemap support
| | | | | | |   
| | | | | | |   A	examples/undocumented/ruby_modular/VectorTest.rb
| | | | | | |   M	src/ruby_modular/swig_typemaps.i
| | | | | | |          
| * | | | | |   commit b9e4f844516476cfa87ec73eb19d8ccd3eb510f5
| |\ \ \ \ \ \  Merge: 9e985b3 1a6d572
| | |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Mon May 23 09:26:36 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| | * | | | | commit 1a6d572aa8b59301ab257cdb0985c2cd0a78e423
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Sat May 21 21:04:15 2011 +0800
| | | | | | | 
| | | | | | |     add java typemaps for SGStringList
| | | | | | | 
| | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | |          
| | * | | | |   commit 81c627faba4d40a9f5fdb11dfc42c836bc9387a5
| | |\ \ \ \ \  Merge: 78e43f6 21d77b5
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 23:11:36 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | | | | |         
| | | * | | | | commit 21d77b5878ddd1e9fe2c0e79143c614574693159
| | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | Date:   Fri May 20 01:09:38 2011 +0400
| | | | | | | | 
| | | | | | | |     Added random seed
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | | | | | M	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | | | | | |           
| | | * | | | |   commit e84118151e5b70518b4cc9b3491860bbf53abc7a
| | | |\ \ \ \ \  Merge: c209dd5 c852a03
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Fri May 20 00:27:42 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | | |          
| | | * | | | | | commit c209dd5b0bbff2ddf6097861f36e54f6c4a06c59
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Fri May 20 00:16:56 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Added testsuite for evaluation classes
| | | | | | | | | 
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_contingencytableevaluation_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_meansquarederror_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_multiclassaccuracy_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_prcevaluation_modular.py
| | | | | | | | | A	examples/undocumented/python_modular/evaluation_rocevaluation_modular.py
| | | | | | | | |            
| | | * | | | | |   commit 69aa7716fd77ccf81e13807a43871634be496f07
| | | |\ \ \ \ \ \  Merge: 3bec041 4c16c19
| | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | Date:   Thu May 19 23:08:24 2011 +0400
| | | | | | | | | | 
| | | | | | | | | |     Merge remote branch 'upstream/master'
| | | | | | | | | |           
| | * | | | | | | | commit 78e43f62a08474c7fd2f5c3cfbfba2465b46436f
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 23:11:23 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     add in and out typemaps for SGStringList
| | | | | | | | | | 
| | | | | | | | | | M	src/python_modular/swig_typemaps.i
| | | | | | | | | |           
| | * | | | | | | | commit 6a4c98e3c74b07edab3700cb9b75122afb16188d
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 23:11:00 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Introduce SGSparseMatrix based set/get functions
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | | | |           
| | * | | | | | | | commit 55cc5cd612f1c01680882bc840f81e4799fd4be4
| | | |_|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | | |   Date:   Thu May 19 23:10:33 2011 +0200
| | | | | | | | |   
| | | | | | | | |       Introduce SGStringList based set/get functions
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/features/StringFeatures.h
| | | | | | | | |            
| | * | | | | | |   commit c852a03badb7b181e74fe56dd38ad93f883a64bb
| | |\ \ \ \ \ \ \  Merge: 064cdc5 2fc9b9e
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Thu May 19 21:44:42 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | | | |     
| | | | | | | | | |     Conflicts:
| | | | | | | | | |     	src/java_modular/swig_typemaps.i
| | | | | | | | | |           
| | | * | | | | | | commit 2fc9b9e6e35ccd95a841c905a130a691a99d00e9
| | | | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | | | Date:   Thu May 19 20:21:26 2011 +0800
| | | | | | | | | | 
| | | | | | | | | |     support jblas matrix
| | | | | | | | | | 
| | | | | | | | | | A	examples/undocumented/java_modular/MatrixTest.java
| | | | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | | | |             
| | * | | | | | | |   commit 064cdc5546344a5099e1552be0c62040d92f5ad2
| | |\ \ \ \ \ \ \ \  Merge: 4c16c19 3bec041
| | | | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |/| / / / / /   Date:   Thu May 19 21:28:06 2011 +0200
| | | |_|/ / / / /    
| | |/| | | | | |         Merge branch 'master' of git://github.com/SergeyLisitsyn/shogun
| | | | | | | | |          
| | | * | | | | | commit 3bec041f64500de4c361bfd4bee6aacd310ab4cc
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Thu May 19 22:18:07 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Added graphical examples for PRC and ROC
| | | | | | | | | 
| | | | | | | | | A	examples/undocumented/python_modular/graphical/prc.py
| | | | | | | | | A	examples/undocumented/python_modular/graphical/roc.py
| | | | | | | | |          
| * | | | | | | | commit 9e985b36daac244ffb1c77259253a8bec708eb2a
| |/ / / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Thu May 19 13:48:15 2011 +0200
| | | | | | | |   
| | | | | | | |       updated copyright
| | | | | | | |   
| | | | | | | |   M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | |   M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | | |   M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | | |   M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | | | | | |   M	src/libshogun/kernel/DistantSegmentsKernel.h
| | | | | | | |         
| * | | | | | | commit 4c16c1989f86f3d84d4fd1e165aac86ff5f7bfd3
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 00:23:50 2011 +0200
| | | | | | | | 
| | | | | | | |     introduce SG_UNREF_NOT_NULL to compilation error
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | M	src/libshogun/features/AttributeFeatures.cpp
| | | | | | | |         
| * | | | | | | commit ddf2879692d8b62a603bb2571c6eb70fbcd6a790
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Thu May 19 00:17:54 2011 +0200
| | | | | | | | 
| | | | | | | |     Revert "potentially fix a gcc 4.6 compilation error"
| | | | | | | |     
| | | | | | | |     This reverts commit 0fe924eca47c3ff5f7c88cac489c2850011d4aec.
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | |         
| * | | | | | | commit 0fe924eca47c3ff5f7c88cac489c2850011d4aec
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed May 18 21:24:32 2011 +0200
| | | | | | | | 
| | | | | | | |     potentially fix a gcc 4.6 compilation error
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | |           
| * | | | | | |   commit 96dc253b8a6f0db79e0bdc836da7021c6ccd1f7f
| |\ \ \ \ \ \ \  Merge: dffdda0 cac23b3
| | | |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | |   Date:   Wed May 18 11:13:02 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | |         
| | * | | | | | commit cac23b3d7ac05e7bc10d937e1e7e59ae156f3188
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 16:53:53 2011 +0800
| | | | | | | | 
| | | | | | | |     remove the jblas classpth
| | | | | | | | 
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | |         
| | * | | | | | commit da5ef189d9f209846d2b1f860f2652fc87b8522b
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 16:15:51 2011 +0800
| | | | | | | | 
| | | | | | | |     add jblas classpath
| | | | | | | | 
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | |         
| | * | | | | | commit c88eb49c36e94963a993fd27e49ad0c45485cbf8
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Wed May 18 15:28:10 2011 +0800
| | | | | | | | 
| | | | | | | |     put the examples into the undocumented/java_modular
| | | | | | | | 
| | | | | | | | A	examples/undocumented/java_modular/VectorTest.java
| | | | | | | | A	examples/undocumented/java_modular/minimal_test.java
| | | | | | | | M	src/java_modular/build.xml
| | | | | | | | D	src/java_modular/shogun/examples/VectorTest.java
| | | | | | | | D	src/java_modular/shogun/examples/minimal_test.java
| | | | | | | |         
| * | | | | | | commit dffdda0ea376967aaf8af269428eca324c6b60ec
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue May 17 21:44:21 2011 +0200
| | | | | | | | 
| | | | | | | |     disable matrix typemaps for now - these should be based on jblas/ujmp
| | | | | | | |     later on.
| | | | | | | | 
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |           
| * | | | | | |   commit 5145468e30337f0a72bd7ade8c7d183f537db0bf
| |\ \ \ \ \ \ \  Merge: 19e72c1 9881d16
| | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | |   Date:   Tue May 17 21:27:17 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | | |         
| | * | | | | | commit 9881d163683af54f7ebc0945218486c41e1a6988
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Tue May 17 21:37:52 2011 +0800
| | | | | | | | 
| | | | | | | |     add SGMatrix support in java typemaps
| | | | | | | | 
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| | * | | | | | commit 93dcf2d8fa34edcf9f2d28a6ce83172a23f819bb
| | | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | | Date:   Tue May 17 19:50:22 2011 +0800
| | | | | | | | 
| | | | | | | |     add get/set vector in/out typemap for java
| | | | | | | | 
| | | | | | | | M	src/java_modular/shogun/examples/VectorTest.java
| | | | | | | | M	src/java_modular/swig_typemaps.i
| | | | | | | |         
| * | | | | | | commit 19e72c1aebd76c7c2c55f1a38743760971f6713e
| | | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | | Date:   Tue May 17 14:25:44 2011 +0200
| | | | | | | | 
| | | | | | | |     renamed new SGVector/SGMatirx based add_matrix(...) and add_vector(...) methods to add(...)
| | | | | | | | 
| | | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | | |           
| * | | | | | |   commit 8d63904dae86d11a365417ba0a37d40f13968510
| |\ \ \ \ \ \ \  Merge: 836aaf8 063c4a8
| | |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | |   Date:   Tue May 17 14:21:04 2011 +0200
| | | | | | | |   
| | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | |         
| | * | | | | | commit 063c4a8ec6d9748a7d8325587f6b54809dbad5d3
| | |/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | |   Date:   Mon May 16 20:21:29 2011 +0200
| | | | | | |   
| | | | | | |       move soon to be obsolete typemaps at the bottom
| | | | | | |   
| | | | | | |   M	src/python_modular/swig_typemaps.i
| | | | | | |        
| * | | | | | commit 836aaf8b44d8ec62284258461e0939a4b2cd33bb
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 16 18:49:41 2011 +0200
| | | | | | | 
| | | | | | |     cleaned up includes
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | | | M	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | |        
| * | | | | | commit 40f1de6bd44a29f33487f859b102a487f93249ff
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 16 18:00:09 2011 +0200
| | | | | | | 
| | | | | | |     added example which uses set_from_paramters to set different kernels of a SVM
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | A	examples/undocumented/libshogun/parameter_iterate_sgobject.cpp
| | | | | | |        
| * | | | | | commit c4909de4fa4cd997a2c73b2c87d04bb14ff18247
| |/ / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Mon May 16 13:15:47 2011 +0200
| | | | | |   
| | | | | |       added add() type wrappers for SGVector and SGMatrix
| | | | | |   
| | | | | |   M	src/libshogun/base/Parameter.cpp
| | | | | |   M	src/libshogun/base/Parameter.h
| | | | | |       
* | | | | | commit 37095f393aed251192c9eb120fd1f4484c5b2969
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Wed May 25 12:12:01 2011 +0400
| | | | | | 
| | | | | |     Added some more routines to MDS and added MDS to modular
| | | | | | 
| | | | | | M	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | M	src/modular/PreProc.i
| | | | | |       
* | | | | | commit 9979faaf81162d347ace354787c6025efce6bd68
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Tue May 24 13:37:12 2011 +0400
| | | | | | 
| | | | | |     Some draft of first stage of MDS
| | | | | | 
| | | | | | A	src/libshogun/preproc/ClassicMDS.cpp
| | | | | | A	src/libshogun/preproc/ClassicMDS.h
| | | | | | D	src/libshogun/preproc/MDS.cpp
| | | | | | D	src/libshogun/preproc/MDS.h
| | | | | |       
* | | | | | commit 3992ac434cfb1fe250e4c63c364c38f6ea61ab35
|/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Mon May 16 16:20:37 2011 +0400
| | | | |   
| | | | |       Added draft of MDS
| | | | |   
| | | | |   A	src/libshogun/preproc/MDS.cpp
| | | | |   A	src/libshogun/preproc/MDS.h
| | | | |      
* | | | | commit 7b958bfd6f1ec03f21c0663479c52afd68a3bbe4
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat May 14 23:24:11 2011 +0200
| | | | | 
| | | | |     rename sparse matrix to sparse vector and introduce sparse matrix
| | | | |     structure and string list structure
| | | | | 
| | | | | M	src/cmdline/CmdLineInterface.cpp
| | | | | M	src/cmdline/CmdLineInterface.h
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | | M	src/libshogun/base/Parameter.h
| | | | | M	src/libshogun/classifier/LPBoost.cpp
| | | | | M	src/libshogun/classifier/LPBoost.h
| | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | M	src/libshogun/lib/Cplex.cpp
| | | | | M	src/libshogun/lib/Cplex.h
| | | | | M	src/libshogun/lib/DataType.cpp
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/libshogun/lib/File.h
| | | | | M	src/libshogun/lib/HDF5File.cpp
| | | | | M	src/libshogun/lib/HDF5File.h
| | | | | M	src/libshogun/lib/LibSVMFile.h
| | | | | M	src/libshogun/lib/SerializableAsciiFile.cpp
| | | | | M	src/libshogun/lib/SerializableAsciiFile.h
| | | | | M	src/libshogun/lib/SerializableAsciiReader00.cpp
| | | | | M	src/libshogun/lib/SerializableAsciiReader00.h
| | | | | M	src/libshogun/lib/SerializableFile.cpp
| | | | | M	src/libshogun/lib/SerializableFile.h
| | | | | M	src/libshogun/lib/SerializableHdf5File.cpp
| | | | | M	src/libshogun/lib/SerializableHdf5File.h
| | | | | M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| | | | | M	src/libshogun/lib/SerializableHdf5Reader00.h
| | | | | M	src/libshogun/lib/SerializableJsonFile.cpp
| | | | | M	src/libshogun/lib/SerializableJsonFile.h
| | | | | M	src/libshogun/lib/SerializableJsonReader00.cpp
| | | | | M	src/libshogun/lib/SerializableJsonReader00.h
| | | | | M	src/libshogun/lib/SerializableXmlFile.cpp
| | | | | M	src/libshogun/lib/SerializableXmlFile.h
| | | | | M	src/libshogun/lib/SerializableXmlReader00.cpp
| | | | | M	src/libshogun/lib/SerializableXmlReader00.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | M	src/libshogun/preproc/SparsePreProc.h
| | | | | M	src/libshogunui/GUIStructure.h
| | | | | M	src/libshogunui/SGInterface.cpp
| | | | | M	src/libshogunui/SGInterface.h
| | | | | M	src/matlab/MatlabInterface.cpp
| | | | | M	src/matlab/MatlabInterface.h
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/SGBase.i
| | | | | M	src/octave/OctaveInterface.cpp
| | | | | M	src/octave/OctaveInterface.h
| | | | | M	src/octave_modular/swig_typemaps.i
| | | | | M	src/python/PythonInterface.cpp
| | | | | M	src/python/PythonInterface.h
| | | | | M	src/python_modular/swig_typemaps.i
| | | | | M	src/r/RInterface.cpp
| | | | | M	src/r/RInterface.h
| | | | |      
* | | | | commit b9d67bb60e4d30f7aec05c5463c6992d7ac30adb
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat May 14 22:36:29 2011 +0200
| | | | | 
| | | | |     add SGMatrix support in python typemaps
| | | | | 
| | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/modular/Features.i
| | | | | M	src/modular/SGBase.i
| | | | | M	src/python_modular/swig_typemaps.i
| | | | |      
* | | | | commit 29dfea96f02deb7d190b86c267afd982072b64fc
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri May 13 16:16:06 2011 +0200
| | | | | 
| | | | |     add get/set vector in/out typemap for python
| | | | | 
| | | | | M	src/libshogun/features/Labels.h
| | | | | M	src/libshogun/lib/DataType.h
| | | | | M	src/python_modular/swig_typemaps.i
| | | | |        
* | | | |   commit ec3229570563742516a1fb8f8d5231a8fe52a66d
|\ \ \ \ \  Merge: a7c1e48 5bc70da
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri May 13 10:45:41 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of git://github.com/karlnapf/shogun
| | | | | |       
| * | | | | commit 5bc70da7d488b29fe8d6b9e5878b4c7f755e500c
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:36:42 2011 +0200
| | | | | | 
| | | | | |     added parameter iteration example
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | |       
| * | | | | commit ffeca12819b88a8a71af040880598a7493b55d91
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:36:15 2011 +0200
| | | | | | 
| | | | | |     added copyright
| | | | | | 
| | | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | |       
| * | | | | commit 764d28dc0abd817ea7e5a40f85527b768c69214b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Fri May 13 10:35:28 2011 +0200
| | | | | | 
| | | | | |     remove redundant save/load for model selection parameters
| | | | | | 
| | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | |       
| * | | | | commit 022633b37aa7d0413bf56601426fd2c54e0f0ac1
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 18:57:31 2011 +0200
| | | | | | 
| | | | | |     added libshogun example for iterating over a float64_t parameter of a kernel, namely kernel width of the GaussianKernel
| | | | | | 
| | | | | | A	examples/undocumented/libshogun/parameter_iterate_float64.cpp
| | | | | |       
| * | | | | commit 9205c4bdc6384647dc10cae6f1ee242d19ba29c6
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 13:05:55 2011 +0200
| | | | | | 
| | | | | |     changed the registration of parameters to use the newly added macros
| | | | | | 
| | | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | |       
| * | | | | commit eb2cc5c9b9ffb85f12c801e76196d11de5412e4b
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Thu May 12 13:02:43 2011 +0200
| | | | | | 
| | | | | |     added macros for registering parameters (possibly also for model selection)
| | | | | | 
| | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | | M	src/libshogun/base/SGObject.h
| | | | | |       
* | | | | | commit a7c1e48fa55f818166cef7a63b585254f0d6743a
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Fri May 13 10:44:36 2011 +0200
| | | | | | 
| | | | | |     introduce set_labels based on SGVector<float64_t> data type
| | | | | | 
| | | | | | M	src/libshogun/features/Labels.h
| | | | | |       
* | | | | | commit 88994f7b41c67d2cb5da8caf9905b33902845f57
|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Fri May 13 10:35:18 2011 +0200
| | | | |   
| | | | |       Introduce SGVector, SGMatrix, SGString, SGSparseMatrix data types.
| | | | |       
| | | | |       And add a get_labels() function for SGVector testing.
| | | | |   
| | | | |   M	src/cmdline/CmdLineInterface.cpp
| | | | |   M	src/cmdline/CmdLineInterface.h
| | | | |   M	src/libshogun/base/Parameter.cpp
| | | | |   M	src/libshogun/base/Parameter.h
| | | | |   M	src/libshogun/classifier/LPBoost.cpp
| | | | |   M	src/libshogun/classifier/LPBoost.h
| | | | |   M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| | | | |   M	src/libshogun/features/HashedWDFeaturesTransposed.h
| | | | |   M	src/libshogun/features/Labels.h
| | | | |   M	src/libshogun/features/SparseFeatures.h
| | | | |   M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | |   M	src/libshogun/features/SparsePolyFeatures.h
| | | | |   M	src/libshogun/features/StringFeatures.h
| | | | |   M	src/libshogun/features/StringFileFeatures.h
| | | | |   M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | |   M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | |   M	src/libshogun/lib/AsciiFile.cpp
| | | | |   M	src/libshogun/lib/AsciiFile.h
| | | | |   M	src/libshogun/lib/BinaryFile.cpp
| | | | |   M	src/libshogun/lib/BinaryFile.h
| | | | |   M	src/libshogun/lib/Cplex.cpp
| | | | |   M	src/libshogun/lib/Cplex.h
| | | | |   M	src/libshogun/lib/DataType.cpp
| | | | |   M	src/libshogun/lib/DataType.h
| | | | |   M	src/libshogun/lib/File.cpp
| | | | |   M	src/libshogun/lib/File.h
| | | | |   M	src/libshogun/lib/HDF5File.cpp
| | | | |   M	src/libshogun/lib/HDF5File.h
| | | | |   M	src/libshogun/lib/LibSVMFile.h
| | | | |   M	src/libshogun/lib/SerializableAsciiFile.cpp
| | | | |   M	src/libshogun/lib/SerializableAsciiFile.h
| | | | |   M	src/libshogun/lib/SerializableAsciiReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableAsciiReader00.h
| | | | |   M	src/libshogun/lib/SerializableFile.cpp
| | | | |   M	src/libshogun/lib/SerializableFile.h
| | | | |   M	src/libshogun/lib/SerializableHdf5File.cpp
| | | | |   M	src/libshogun/lib/SerializableHdf5File.h
| | | | |   M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| | | | |   M	src/libshogun/lib/SerializableHdf5Reader00.h
| | | | |   M	src/libshogun/lib/SerializableJsonFile.cpp
| | | | |   M	src/libshogun/lib/SerializableJsonFile.h
| | | | |   M	src/libshogun/lib/SerializableJsonReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableJsonReader00.h
| | | | |   M	src/libshogun/lib/SerializableXmlFile.cpp
| | | | |   M	src/libshogun/lib/SerializableXmlFile.h
| | | | |   M	src/libshogun/lib/SerializableXmlReader00.cpp
| | | | |   M	src/libshogun/lib/SerializableXmlReader00.h
| | | | |   M	src/libshogun/lib/StreamingFile.cpp
| | | | |   M	src/libshogun/lib/StreamingFile.h
| | | | |   M	src/libshogun/preproc/SparsePreProc.h
| | | | |   M	src/libshogun/structure/PlifMatrix.cpp
| | | | |   M	src/libshogun/structure/PlifMatrix.h
| | | | |   M	src/libshogunui/GUIFeatures.cpp
| | | | |   M	src/libshogunui/GUIStructure.h
| | | | |   M	src/libshogunui/SGInterface.cpp
| | | | |   M	src/libshogunui/SGInterface.h
| | | | |   M	src/matlab/MatlabInterface.cpp
| | | | |   M	src/matlab/MatlabInterface.h
| | | | |   M	src/modular/Features.i
| | | | |   M	src/modular/Structure.i
| | | | |   M	src/octave/OctaveInterface.cpp
| | | | |   M	src/octave/OctaveInterface.h
| | | | |   M	src/octave_modular/swig_typemaps.i
| | | | |   M	src/python/PythonInterface.cpp
| | | | |   M	src/python/PythonInterface.h
| | | | |   M	src/python_modular/swig_typemaps.i
| | | | |   M	src/r/RInterface.cpp
| | | | |   M	src/r/RInterface.h
| | | | |   M	src/r_modular/swig_typemaps.i
| | | | |      
* | | | | commit c29d4e95736b3845c1c45d1efda3a7f4725d2e4c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed May 11 14:29:00 2011 +0200
| | | | | 
| | | | |     added  exit_shogun.
| | | | | 
| | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | |      
* | | | | commit f9bdf3b21b5a7d6c45e2e91e72505e9239f15c6e
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Wed May 11 14:14:08 2011 +0200
| | | | | 
| | | | |     coding style
| | | | | 
| | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | M	src/libshogun/base/Parameter.cpp
| | | | |        
* | | | |   commit 6ab02271c636e998a0431b6cc485ebb1292d16d7
|\ \ \ \ \  Merge: 4c8bb0f ef8e476
| | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | Date:   Wed May 11 13:47:47 2011 +0200
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |         
| * | | | |   commit ef8e476e2d7aa0720e26e0aef566a18662a1749f
| |\ \ \ \ \  Merge: a996050 40e3306
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue May 10 22:20:57 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| | * | | | | commit 40e3306bca246afaa00915a64693785a04ab71d8
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Tue May 10 15:53:38 2011 +0800
| | | | | | | 
| | | | | | |     move compilation to classes directory, fixed path in the jar file
| | | | | | | 
| | | | | | | D	examples/undocumented/java_modular/minimal_test.java
| | | | | | | M	src/java_modular/build.xml
| | | | | | | A	src/java_modular/shogun/examples/minimal_test.java
| | | | | | |        
* | | | | | | commit 4c8bb0fb127dbdd6f47ebb4be5067a1dc5f2c036
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 11:05:13 2011 +0200
| | | | | | | 
| | | | | | |     -code style changes
| | | | | | |     -usage of new instead of malloc
| | | | | | |     -cleaned includes
| | | | | | |     -usage of CMath::fill_vector
| | | | | | |     -added missing memory cleanup
| | | | | | |     -minor changes
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | |        
* | | | | | | commit cec991f21e9b9cf1bd83a4c5c7161023df7c3efd
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 10:25:58 2011 +0200
| | | | | | | 
| | | | | | |     removed random keyboard hit, sorry
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | |        
* | | | | | | commit f78ff9756a069fb60f71e9a4440673c4d05dabc8
| | | | | | | Author: heiko <heiko@user.(none)>
| | | | | | | Date:   Tue May 10 10:20:32 2011 +0200
| | | | | | | 
| | | | | | |     removed malloc success check due to new usage of SG_MALLOC
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | |          
* | | | | | |   commit 625becf07594f8db5b52e4d604bf5c6f9c6e8d1f
|\ \ \ \ \ \ \  Merge: 5861b28 a996050
| |/ / / / / /  Author: heiko <heiko@user.(none)>
| | | | | | |   Date:   Tue May 10 10:19:10 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| * | | | | | commit a996050d3f5f5cc76d5a12ce13800af8c486b181
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 21:29:52 2011 +0200
| | | | | | | 
| | | | | | |     draft definition for vector / matrix datatype
| | | | | | | 
| | | | | | | M	src/libshogun/lib/DataType.h
| | | | | | |        
* | | | | | | commit 5861b289e49a7427b7cd1268adb695c54dcdc0ea
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Mon May 9 19:48:33 2011 +0200
| | | | | | | 
| | | | | | |     Revert "changed in32_t type of all used indices for subset selection to index_t"
| | | | | | |     
| | | | | | |     This reverts commit d7f57e1fbe31f808bf47bf35f9e2427c2216454f.
| | | | | | |     
| | | | | | |     Conflicts:
| | | | | | |     
| | | | | | |     	src/libshogun/features/Features.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |          
* | | | | | |   commit 63875d0da4200c2672010809d786a9f2adcf6b31
|\ \ \ \ \ \ \  Merge: 5af5c0a 6e92985
| |/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | |   Date:   Mon May 9 19:45:26 2011 +0200
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |       
| | | | | | |       Conflicts:
| | | | | | |       	src/libshogun/features/Features.cpp
| | | | | | |        
| * | | | | | commit 6e9298532e6060468951dd65b79b8c7714b773b2
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 13:06:45 2011 +0200
| | | | | | | 
| | | | | | |     Convert all memory functions to use the SG_* ones.
| | | | | | | 
| | | | | | | M	src/libshogun/base/DynArray.h
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/classifier/KNN.cpp
| | | | | | | M	src/libshogun/classifier/KernelMachine.h
| | | | | | | M	src/libshogun/classifier/LinearClassifier.h
| | | | | | | M	src/libshogun/classifier/svm/GPBTSVM.cpp
| | | | | | | M	src/libshogun/classifier/svm/LaRank.cpp
| | | | | | | M	src/libshogun/classifier/svm/LibLinear.cpp
| | | | | | | M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| | | | | | | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | | | | | | M	src/libshogun/classifier/svm/SVM_linear.cpp
| | | | | | | M	src/libshogun/classifier/svm/ScatterSVM.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpdt.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpdtsolve.cpp
| | | | | | | M	src/libshogun/classifier/svm/gpm.cpp
| | | | | | | M	src/libshogun/classifier/svm/libocas.h
| | | | | | | M	src/libshogun/classifier/svm/libocas_common.h
| | | | | | | M	src/libshogun/classifier/svm/libqp.h
| | | | | | | M	src/libshogun/classifier/svm/pr_loqo.cpp
| | | | | | | M	src/libshogun/clustering/Hierarchical.h
| | | | | | | M	src/libshogun/clustering/KMeans.cpp
| | | | | | | M	src/libshogun/clustering/KMeans.h
| | | | | | | M	src/libshogun/distance/Distance.cpp
| | | | | | | M	src/libshogun/distributions/Distribution.cpp
| | | | | | | M	src/libshogun/distributions/Histogram.cpp
| | | | | | | M	src/libshogun/distributions/LinearHMM.cpp
| | | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | M	src/libshogun/features/Alphabet.h
| | | | | | | M	src/libshogun/features/AttributeFeatures.h
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Labels.cpp
| | | | | | | M	src/libshogun/features/SNPFeatures.cpp
| | | | | | | M	src/libshogun/features/SimpleFeatures.h
| | | | | | | M	src/libshogun/features/SparseFeatures.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | | M	src/libshogun/kernel/CombinedKernel.cpp
| | | | | | | M	src/libshogun/kernel/CommUlongStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | | | M	src/libshogun/kernel/LinearKernel.h
| | | | | | | M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/SNPStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
| | | | | | | M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | | | | | | M	src/libshogun/lib/Array.h
| | | | | | | M	src/libshogun/lib/BinaryStream.h
| | | | | | | M	src/libshogun/lib/File.cpp
| | | | | | | M	src/libshogun/lib/File.h
| | | | | | | M	src/libshogun/lib/HDF5File.cpp
| | | | | | | M	src/libshogun/lib/SerializableFile.cpp
| | | | | | | M	src/libshogun/lib/SimpleFile.h
| | | | | | | M	src/libshogun/lib/Trie.h
| | | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | | M	src/libshogun/preproc/KernelPCACut.cpp
| | | | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | | | M	src/libshogun/regression/svr/LibSVR.cpp
| | | | | | | M	src/libshogun/structure/DynProg.cpp
| | | | | | | M	src/libshogun/structure/IntronList.cpp
| | | | | | |        
| * | | | | | commit 84e585eb9bb326a6b940220f0968eeb4981bbf18
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 13:05:22 2011 +0200
| | | | | | | 
| | | | | | |     Introduce SG_MALLOC, SG_FREE, SG_REALLOC.
| | | | | | |     
| | | | | | |     These replacements to the stdlib functions will throw exceptions in case
| | | | | | |     of errors (never return NULL).
| | | | | | | 
| | | | | | | M	src/libshogun/lib/memory.cpp
| | | | | | | M	src/libshogun/lib/memory.h
| | | | | | |        
| * | | | | | commit a861f66138f5d023172d404f3c5cb27cd81dc6e5
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 12:50:29 2011 +0200
| | | | | | | 
| | | | | | |     fix multiclass example
| | | | | | | 
| | | | | | | M	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| | | | | | |        
| * | | | | | commit 7890ec258b97d286210c1a16ed83fee77980fa24
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon May 9 12:48:54 2011 +0200
| | | | | | | 
| | | | | | |     remove roc eval functions from static interfaces
| | | | | | | 
| | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | M	src/libshogunui/GUIHMM.cpp
| | | | | | | M	src/libshogunui/GUIHMM.h
| | | | | | | M	src/libshogunui/GUIMath.cpp
| | | | | | | M	src/libshogunui/GUIMath.h
| | | | | | | M	src/libshogunui/GUIPluginEstimate.cpp
| | | | | | | M	src/libshogunui/GUIPluginEstimate.h
| | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | |          
| * | | | | |   commit 02aa123b608ec7f10b81fe121a9b27b7418ddd4f
| |\ \ \ \ \ \  Merge: f3601ef 7d559e6
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Fri May 6 21:13:49 2011 +0200
| | | | | | | | 
| | | | | | | |     Merge branch 'master' of git://github.com/chengsoonong/shogun
| | | | | | | |         
| | * | | | | | commit 7d559e64c3ce4f66e4db88b5778944844bb3a735
| | | | | | | | Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| | | | | | | | Date:   Fri May 6 11:08:04 2011 +0200
| | | | | | | | 
| | | | | | | |     Added data and code for generating figures in PLoS SVM tutorial paper
| | | | | | | | 
| | | | | | | | A	applications/easysvm/tutpaper/data/effect_of_c.data
| | | | | | | | A	applications/easysvm/tutpaper/data/nonlinear.data
| | | | | | | | A	applications/easysvm/tutpaper/data/small_gc_toy.data
| | | | | | | | A	applications/easysvm/tutpaper/data/small_gc_toy_outlier.data
| | | | | | | | A	applications/easysvm/tutpaper/svm_params.py
| | | | | | | |           
| * | | | | | |   commit f3601ef559ef43814bf60edbb39cad1a0d121000
| |\ \ \ \ \ \ \  Merge: 5e61a00 b61fd38
| | |/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| / / / / /   Date:   Fri May 6 21:03:58 2011 +0200
| | |/ / / / /    
| | | | | | |         Merge branch 'master' of git://github.com/sploving/shogun
| | | | | | |        
| | * | | | | commit b61fd38b94f70acd98cd749d0cd71849eb9d57ee
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Wed May 4 19:53:59 2011 +0800
| | | | | | | 
| | | | | | |     put all the class into shogun package and add build.xml file
| | | | | | | 
| | | | | | | M	src/configure
| | | | | | | M	src/java_modular/build.xml
| | | | | | | M	src/java_modular/shogun/examples/VectorTest.java
| | | | | | |        
| | * | | | | commit e273a47f2f27878580cdb51dcefa0919e56a5f39
| | | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | | Date:   Wed May 4 14:52:03 2011 +0800
| | | | | | | 
| | | | | | |     put java classes into shogun package and add build.xml file
| | | | | | | 
| | | | | | | D	examples/undocumented/java_modular/vector_test.java
| | | | | | | A	src/java_modular/build.xml
| | | | | | | A	src/java_modular/shogun/examples/VectorTest.java
| | | | | | |        
* | | | | | | commit 5af5c0a4b4f286f0236452f25754a16b17e726aa
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 17:26:19 2011 +0200
| | | | | | | 
| | | | | | |     added set_from_parameters example
| | | | | | | 
| | | | | | | M	examples/undocumented/libshogun/Makefile
| | | | | | | A	examples/undocumented/libshogun/parameter_set_from_parameters.cpp
| | | | | | |        
* | | | | | | commit d7f57e1fbe31f808bf47bf35f9e2427c2216454f
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 17:02:10 2011 +0200
| | | | | | | 
| | | | | | |     changed in32_t type of all used indices for subset selection to index_t
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.cpp
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |        
* | | | | | | commit 186cddf04f57b659b3a6ba0147ff8fd69e92b4c4
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Thu May 5 11:41:32 2011 +0200
| | | | | | | 
| | | | | | |     moved the subset_idx_conversion function to CFeatures because it is the same for every derived class.
| | | | | | |     Therefore, removed it from CStringFeatures
| | | | | | | 
| | | | | | | M	src/libshogun/features/Features.h
| | | | | | | M	src/libshogun/features/StringFeatures.h
| | | | | | |        
* | | | | | | commit fdbacc9d1a63e6f05445c24142ae5dfee57f249d
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Wed May 4 23:13:40 2011 +0200
| | | | | | | 
| | | | | | |     added small documentation line
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
* | | | | | | commit 9d31dea3310a49fd2b548936e6f549ce70d0f4d2
| | | | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | | | Date:   Wed May 4 22:53:21 2011 +0200
| | | | | | | 
| | | | | | |     added function set_from_parameters(Parameter*) to set parameters from another Parameter instance
| | | | | | | 
| | | | | | | M	src/libshogun/base/Parameter.cpp
| | | | | | | M	src/libshogun/base/Parameter.h
| | | | | | |        
* | | | | | | commit 85d0dd40e29c295f48ff8aadc05b717515b970fa
|/ / / / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | |   Date:   Wed May 4 22:52:37 2011 +0200
| | | | | |   
| | | | | |       added fcuntions to get size in bytes and number of elements of a TSGDataType
| | | | | |   
| | | | | |   M	src/libshogun/lib/DataType.cpp
| | | | | |   M	src/libshogun/lib/DataType.h
| | | | | |       
* | | | | | commit 5e61a004c3b0654d75fd9d86bc553ad73da929fa
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon May 2 14:48:45 2011 +0200
| | | | | | 
| | | | | |     PPWMs are really in logspace + malloc instead of new
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | | M	src/libshogun/distributions/PositionalPWM.cpp
| | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | |       
* | | | | | commit 48a49bee91e2c547a28e572c0c4a2f59a169ee2c
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon May 2 13:44:35 2011 +0200
| | | | | | 
| | | | | |     ppwm fixes in compute w
| | | | | | 
| | | | | | M	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | | M	src/libshogun/distributions/PositionalPWM.cpp
| | | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | |       
* | | | | | commit 5904d7e7939ac48d8e68815b373f592e91036ebb
| |_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon May 2 13:43:09 2011 +0200
| | | | |   
| | | | |       fix bessel warning
| | | | |   
| | | | |   M	src/libshogun/kernel/Kernel.cpp
| | | | |      
* | | | | commit ecbc74b86ffd95d2f1d7882dd8e4af508a794f1c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun May 1 00:33:25 2011 +0400
| | | | | 
| | | | |     Added class CLabels usage in a few classes
| | | | | 
| | | | | M	src/libshogun/classifier/GaussianNaiveBayes.h
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | | M	src/libshogun/evaluation/PRCEvaluation.h
| | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | |      
* | | | | commit 48f88b52d84fbb85588d1f4df88fe212678bc566
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun May 1 00:24:26 2011 +0400
| | | | | 
| | | | |     Fixed shogun.Evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/modular/Evaluation.i
| | | | |      
* | | | | commit ee59788619357406edfccb0ff6c8e4737b08d34c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:53:14 2011 +0400
| | | | | 
| | | | |     Code-style fix for area under curve method
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
* | | | | commit 2445bd4e1aa895801f92ec231a8edf03bc383090
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:51:25 2011 +0400
| | | | | 
| | | | |     Removed unused ROC calculation method from CMath
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
* | | | | commit 96c3af6b9c5062e484cdf5dc0fdb4c1f3c3ed5d8
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:48:05 2011 +0400
| | | | | 
| | | | |     Removed PerformanceMeasures from modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
* | | | | commit eb35783a6c49c18664474d1ffd77a9ccf5d98309
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 23:47:39 2011 +0400
| | | | | 
| | | | |     Removed PerfomanceMeasures classfiles
| | | | | 
| | | | | D	src/libshogun/evaluation/PerformanceMeasures.cpp
| | | | | D	src/libshogun/evaluation/PerformanceMeasures.h
| | | | |      
* | | | | commit 0aeb245f21147974a34013d3f614c389ccc16d05
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 11:20:36 2011 +0400
| | | | | 
| | | | |     Cleaned CROCEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | |      
* | | | | commit 2315f1c066e72b3cab1b5fa60b83ebca75c6e7b8
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:28:17 2011 +0400
| | | | | 
| | | | |     Fixed PRCEvaluation and ROCEvaluation for area_under_curve usage
| | | | | 
| | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | |      
* | | | | commit c4cf4dca60271fb121d0aa1f31c8a2da4e67e3fa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:12:30 2011 +0400
| | | | | 
| | | | |     Modified CPRCEvaluation for area_under_curve usage
| | | | | 
| | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | |      
* | | | | commit 3e93f290254b8edaf10893bc8a0e23aa3409f7f4
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sat Apr 30 00:10:59 2011 +0400
| | | | | 
| | | | |     Fixed area_under_curve method
| | | | | 
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |        
* | | | |   commit 4439d2018f76952a89736f3977f8fa6c33c71c93
|\ \ \ \ \  Merge: 4335fd6 046e59e
| | |_|_|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Fri Apr 29 23:50:25 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |        
| * | | |   commit 046e59e5ed22ad204362bdac642594834d2859a4
| |\ \ \ \  Merge: 2461c5e a19e63f
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | |   Date:   Fri Apr 29 15:01:34 2011 +0200
| | | | |   
| | | | |       Merge git://github.com/sploving/shogun
| | | | |      
| | * | | commit a19e63fa222d5e600313a5142423898a06936fc1
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Fri Apr 29 19:28:56 2011 +0800
| | | | | 
| | | | |     fix java vector typemap bug
| | | | | 
| | | | | M	examples/undocumented/java_modular/vector_test.java
| | | | | M	src/java_modular/swig_typemaps.i
| | | | |      
| | * | | commit 363e8825674ff6b3acad2b8d5b36231cddb9ce4d
| | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | Date:   Fri Apr 29 16:14:35 2011 +0800
| | | | | 
| | | | |     java vector typemap and example
| | | | | 
| | | | | A	examples/undocumented/java_modular/vector_test.java
| | | | | M	src/java_modular/swig_typemaps.i
| | | | |      
| * | | | commit 2461c5e20be9af2dd3adfac524655d536098527d
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Apr 29 15:00:44 2011 +0200
| | | | | 
| | | | |     Add simple example for ppwm.
| | | | | 
| | | | | A	examples/undocumented/python_modular/distribution_ppwm_modular.py
| | | | | M	src/libshogun/distributions/PositionalPWM.h
| | | | | M	src/modular/Distribution.i
| | | | |      
| * | | | commit 4cc591aac45b92998749032650f29ac05eb716c7
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Fri Apr 29 08:30:40 2011 +0200
| | | | | 
| | | | |     Add first draft of ppwm.
| | | | | 
| | | | | A	src/libshogun/distributions/PositionalPWM.cpp
| | | | | A	src/libshogun/distributions/PositionalPWM.h
| | | | | M	src/modular/Distribution.i
| | | | |      
| * | | | commit e24feb1926a01503d5f2568aa4673733e446c623
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Fri Apr 29 08:29:51 2011 +0200
| | | |   
| | | |       add * to comment to get doxygen notice it
| | | |   
| | | |   M	src/libshogun/evaluation/PRCEvaluation.h
| | | |   M	src/libshogun/evaluation/ROCEvaluation.h
| | | |       
| * | |   commit 2be31a4af20f151eec65f20d1c8d972ed8568437
| |\ \ \  Merge: b10f479 38d7b67
| | |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Apr 28 15:52:38 2011 +0200
| | | |   
| | | |       Merge branches 'streaming' and 'master' of git://github.com/frx/shogun
| | | |       
| | * |   commit 38d7b67845a77bb0c51d16812076f56d0a2c6d29
| | |\ \  Merge: 658af1f 05b88ec
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Wed Apr 27 19:19:38 2011 +0530
| | | | | 
| | | | |     Merge remote branch 'upstream/master' into streaming
| | | | |      
| | * | | commit 658af1fd3e60ee9e9913d1865ca5231a396c178e
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 22:06:44 2011 +0530
| | | | | 
| | | | |     Minor typos preventing compilation fixed in parser and StreamingFeatures.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/parser.cpp
| | | | |      
| | * | | commit 12127650ee80705e40c608cca9c8855718125e96
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 22:01:42 2011 +0530
| | | | | 
| | | | |     Fixed indentation as per pull request comments.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |      
| | * | | commit ab4f54c920ceb42c91f8bf4bbf4cee20bcf12bbc
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Mon Apr 25 21:04:51 2011 +0530
| | | | | 
| | | | |     Feature vectors are no more copied into the StreamingFeature object. Plus style modifications as per pull request.
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | M	src/libshogun/lib/StreamingFile.cpp
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |      
| | * | | commit 457d7480af1f46a1f84e15fbfcf14ed427f6f9d2
| | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | Date:   Fri Apr 22 05:34:19 2011 +0530
| | | | | 
| | | | |     Fixed some whitespace issues in parser
| | | | | 
| | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | M	src/libshogun/lib/parser.cpp
| | | | | M	src/libshogun/lib/parser.h
| | | | |        
| | * | |   commit 17b91ad9717526a107a7d4a0831a4de33245ab08
| | |\ \ \  Merge: 131b21e 621c7f9
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Apr 22 05:08:28 2011 +0530
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | |       
| | * | | | commit 131b21ee0fdfa7ee89c23b77641558dee084a200
| | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | Date:   Fri Apr 22 05:07:44 2011 +0530
| | | | | | 
| | | | | |     Fixed StreamingFeatures and parser, now in working condition.
| | | | | | 
| | | | | | M	src/libshogun/features/StreamingFeatures.cpp
| | | | | | M	src/libshogun/features/StreamingFeatures.h
| | | | | | M	src/libshogun/lib/parser.cpp
| | | | | | M	src/libshogun/lib/parser.h
| | | | | |         
| | * | | |   commit 3f57236044bd880183e34bc1e01bc3f90baaa335
| | |\ \ \ \  Merge: 6183c91 02c32c3
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:50:36 2011 +0530
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | |        
| | * | | | | commit 6183c919956f4c1be2cbc4fae37492c0e397bb23
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:45:18 2011 +0530
| | | | | | | 
| | | | | | |     Edits in StreamingFile for compatibility with parser.
| | | | | | | 
| | | | | | | M	src/libshogun/lib/StreamingFile.h
| | | | | | |        
| | * | | | | commit 555f7b54d788a8ecd3353a7037a008e4dced886e
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Thu Apr 21 08:44:25 2011 +0530
| | | | | | | 
| | | | | | |     Improved parser for handling CStreamingFile. Doc added.
| | | | | | | 
| | | | | | | A	src/libshogun/lib/parser.cpp
| | | | | | | A	src/libshogun/lib/parser.h
| | | | | | |        
| | * | | | | commit 6db242d10747a75362c930c3ea0b5b794a10a855
| | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | Date:   Wed Apr 20 14:32:50 2011 +0530
| | | | | | | 
| | | | | | |     Untracked some files
| | | | | | | 
| | | | | | | D	examples/undocumented/libshogun/sample.dat
| | | | | | | D	examples/undocumented/libshogun/streaming_feat.cpp
| | | | | | | D	src/libshogun/lib/parser.cpp
| | | | | | | D	src/libshogun/lib/parser.h
| | | | | | |          
| | * | | | |   commit 8acfb7329bb51efae188979086a87043a407fede
| | |\ \ \ \ \  Merge: b4d8235 080b05b
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Wed Apr 20 14:24:56 2011 +0530
| | | | | | | | 
| | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | |         
| | * | | | | | commit b4d8235cf940c93625efcbbb170839fe3b0595a6
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Wed Apr 20 14:21:17 2011 +0530
| | | | | | | | 
| | | | | | | |     StreamingFile created, implemented a get_.._vector function.
| | | | | | | | 
| | | | | | | | A	src/libshogun/lib/StreamingFile.cpp
| | | | | | | | A	src/libshogun/lib/StreamingFile.h
| | | | | | | |         
| | * | | | | | commit 64e34a8594043afe5939b2836ca915b31eec7113
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Tue Apr 19 13:30:04 2011 +0530
| | | | | | | | 
| | | | | | | |     Corrected include file paths (properly).
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | |         
| | * | | | | | commit 8f80281d02068ca94be5664ec7fe1b11529a7481
| | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | Date:   Tue Apr 19 10:42:07 2011 +0530
| | | | | | | | 
| | | | | | | |     Modified include paths in AsciiFile.h to <shogun/..>
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | |           
| | * | | | | |   commit 72011b67fc9e1126315f0e2c8530f4df2597aef9
| | |\ \ \ \ \ \  Merge: d4f9130 6d779fb
| | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | Date:   Tue Apr 19 09:33:21 2011 +0530
| | | | | | | | | 
| | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | |            
| | * | | | | | |   commit d4f913021bc8b578582e28348e6a778eee542fde
| | |\ \ \ \ \ \ \  Merge: fa0e6e3 152a967
| | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 22:11:37 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | | |           
| | * | | | | | | | commit fa0e6e399964fdbda4be7e18b2c84d92c5e60154
| | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 02:18:41 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Moved some files into the examples folder.
| | | | | | | | | | 
| | | | | | | | | | A	examples/undocumented/libshogun/sample.dat
| | | | | | | | | | A	examples/undocumented/libshogun/streaming_feat.cpp
| | | | | | | | | | D	src/libshogun/features/sample.dat
| | | | | | | | | |             
| | * | | | | | | |   commit 5b08acb3c7c9cfcdc86debf845765e6426bc912c
| | |\ \ \ \ \ \ \ \  Merge: 5963e1e 47f74d3
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 01:57:43 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Merge remote branch 'upstream/master' into streaming
| | | | | | | | | | |            
| | * | | | | | | | | commit 5963e1ed865643ca43a748f86017166797b4ef51
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 01:44:28 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     StreamingFeatures class, working prototype
| | | | | | | | | | | 
| | | | | | | | | | | A	src/libshogun/features/StreamingFeatures.cpp
| | | | | | | | | | | A	src/libshogun/features/StreamingFeatures.h
| | | | | | | | | | | A	src/libshogun/features/sample.dat
| | | | | | | | | | | A	src/libshogun/lib/parser.cpp
| | | | | | | | | | | A	src/libshogun/lib/parser.h
| | | | | | | | | | |            
| * | | | | | | | | | commit b10f479df90ef2b6d930dd1faa20e65f7d1dadfc
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 05:43:38 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     use #if defined and friends to make the file more readable and to only
| | | | | | | | | | |     include init functions in the csharp and java modular interfaces.
| | | | | | | | | | | 
| | | | | | | | | | | M	src/modular/SGBase.i
| | | | | | | | | | |            
| * | | | | | | | | | commit fec837dc12622398e3a3ac8feafe168da0120c31
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 05:25:35 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     update readme to mention the new interfaces
| | | | | | | | | | | 
| | | | | | | | | | | M	README
| | | | | | | | | | |            
| * | | | | | | | | | commit 479c5cd1867466c3a1ba743a94276d9f8430084c
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Thu Apr 28 04:59:01 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     comment init code for SWIGR
| | | | | | | | | | | 
| | | | | | | | | | | M	src/modular/SGBase.i
| | | | | | | | | | |            
| * | | | | | | | | | commit 4d0fe5dcd1bcef2e9f56d0f93d709a3547c014e7
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 23:22:46 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     rename functions to reflect that we obtain the global objects
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/base/SGObject.cpp
| | | | | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | | | |            
| * | | | | | | | | | commit 7b926a5aac2c8a9b5548260a8c2847c26ebb894f
| | |_|_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | | | |   Date:   Wed Apr 27 22:51:08 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       fix compile failure
| | | | | | | | | |       
| | | | | | | | | |       It got introduced in the csharp commit (protected variables
| | | | | | | | | |       where accessed - introducing public getters fixes this).
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/Mathematics.h
| | | | | | | | | |   M	src/libshogunui/SGInterface.cpp
| | | | | | | | | |             
| * | | | | | | | |   commit 9ce80cb84abaa913f8468c8bc5b70827b1fdf536
| |\ \ \ \ \ \ \ \ \  Merge: 2e28298 fb806de
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:43:22 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge git://github.com/frx/shogun
| | | | | | | | | | |            
| | * | | | | | | | | commit fb806de0a57322a26202e3fbc3eba74dc3be7845
| | | | | | | | | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | | | | | | | | Date:   Tue Apr 19 13:31:38 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Corrected include file paths (properly).
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 71f132ccf586fcb6016a2a86172e346ac202909e
| | | |_|_|/ / / / /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| | |/| | | | | | |   Date:   Tue Apr 19 10:45:50 2011 +0530
| | | | | | | | | |   
| | | | | | | | | |       Modified include paths in AsciiFile.h to <shogun/..>
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | |             
| * | | | | | | | |   commit 2e2829807650b9efd69babc81855bc80ea1ba0fe
| |\ \ \ \ \ \ \ \ \  Merge: 61fc777 9147f26
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:40:34 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge git://github.com/chengsoonong/shogun
| | | | | | | | | | |            
| | * | | | | | | | | commit 9147f2603ece0f05d8c0318dcec9ef27dcc58ac5
| | | | | | | | | | | Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| | | | | | | | | | | Date:   Wed Apr 27 17:29:45 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Small bugfix to cross validation function call
| | | | | | | | | | | 
| | | | | | | | | | | M	applications/easysvm/setup.py
| | | | | | | | | | | M	applications/easysvm/splicesites/tutorial_example.py
| | | | | | | | | | |            
| * | | | | | | | | | commit 61fc7773d27561bcd581408b03c09798fd2b0d07
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:28:17 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     add lib prefix like in java to generated .so files
| | | | | | | | | | | 
| | | | | | | | | | | M	src/configure
| | | | | | | | | | |            
| * | | | | | | | | | commit bc536fcbd4998075e2f66a28b8aa6c7c9c2838b2
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 22:27:28 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Get a minimal csharp example to work.
| | | | | | | | | | | 
| | | | | | | | | | | A	examples/undocumented/csharp_modular/minimal_test.cs
| | | | | | | | | | | M	src/libshogun/base/DynArray.h
| | | | | | | | | | | M	src/libshogun/base/SGObject.h
| | | | | | | | | | | M	src/libshogun/lib/DynamicArray.h
| | | | | | | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | | | | | | |            
| * | | | | | | | | | commit 5dbbbb2e12bac7209279f052e5397540d466f849
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:21:28 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     rename variables to fix naming clashes
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/kernel/CauchyKernel.cpp
| | | | | | | | | | | M	src/libshogun/kernel/CauchyKernel.h
| | | | | | | | | | |            
| * | | | | | | | | | commit bbadc47e054fb8a7ff4a6705d590cc55a419fd3d
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:21:10 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     ignore *.class files too
| | | | | | | | | | | 
| | | | | | | | | | | M	.gitignore
| | | | | | | | | | |            
| * | | | | | | | | | commit d83b31e9a0b43ecffbe3fa29fca1766be6d14879
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 27 20:20:27 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     add ruby modular minimal example
| | | | | | | | | | | 
| | | | | | | | | | | A	examples/undocumented/ruby_modular/minimal_test.rb
| | | | | | | | | | |            
| * | | | | | | | | | commit 7b024009f4dc139be92aa84dbd8a57ad070d57bf
| |/ / / / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | |   Date:   Wed Apr 27 17:38:21 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       whitespace changes - to match coding style
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/base/Parameter.cpp
| | | | | | | | | |   M	src/libshogun/lib/DataType.h
| | | | | | | | | |           
| * | | | | | | | | commit e1dcd70115ac9ecb28162c6945f022e4a2434df0
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:25:23 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix member naming clash
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/kernel/MultiquadricKernel.cpp
| | | | | | | | | | M	src/libshogun/kernel/MultiquadricKernel.h
| | | | | | | | | |           
| * | | | | | | | | commit aad532b76489e61c535220ca00da3db87f3d72c1
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:24:16 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix (member) variable naming clashes
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/kernel/LogKernel.cpp
| | | | | | | | | | M	src/libshogun/kernel/LogKernel.h
| | | | | | | | | |           
| * | | | | | | | | commit c8e00659183070507341a073984cb7ef889467f9
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 16:23:20 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     prefix java_modular generated .so files with lib
| | | | | | | | | | 
| | | | | | | | | | M	src/configure
| | | | | | | | | |           
| * | | | | | | | | commit 4763b141e574a35e36f090ab4d220b6cb6af59f6
| | |_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | | | | |   Date:   Wed Apr 27 16:15:45 2011 +0200
| | | | | | | | |   
| | | | | | | | |       fix a variable naming clash
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | | | |          
| * | | | | | | | commit 05b88ec75edb1d4e0d6f3c6998c2031e4b952d2d
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:35:36 2011 +0200
| | | | | | | | | 
| | | | | | | | |     add an example for mixed norm mkl and make BLOCK_NORM naming more
| | | | | | | | |     consistent (always with '_')
| | | | | | | | | 
| | | | | | | | | M	examples/undocumented/matlab_and_octave/mkl_classify_christmas_star.m
| | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | | M	src/libshogunui/SGInterface.h
| | | | | | | | |          
| * | | | | | | | commit 8af2ece0483903001ebd8aea76e6b51cfe995ea7
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:35:14 2011 +0200
| | | | | | | | | 
| | | | | | | | |     fix naming clash renaming degree -> m_degree
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/kernel/PowerKernel.cpp
| | | | | | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | | | | | |          
| * | | | | | | | commit 7ce4b0ef41c113c48fbcdd2e8ce2288607c98629
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Wed Apr 27 12:15:13 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Add support for block norm mkl
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.cpp
| | | | | | | | | M	src/libshogun/classifier/mkl/MKL.h
| | | | | | | | | M	src/libshogunui/GUIClassifier.cpp
| | | | | | | | | M	src/libshogunui/GUIClassifier.h
| | | | | | | | | M	src/libshogunui/GUICommands.h
| | | | | | | | | M	src/libshogunui/SGInterface.cpp
| | | | | | | | |            
| * | | | | | | |   commit 320094d67ad042981df2d20540bdc8b123a9da4c
| |\ \ \ \ \ \ \ \  Merge: b318a31 c962ae9
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 01:12:06 2011 -0700
| | | | | | | | | | 
| | | | | | | | | |     Merged pull request #70 from SergeyLisitsyn/master.
| | | | | | | | | |     
| | | | | | | | | |     PRCEvaluation class addition and some fixes for shogun.Evaluation
| | | | | | | | | |           
| * | | | | | | | | commit b318a318699a1dcf04d215ba21bf51f42d26fe1d
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Wed Apr 27 07:53:04 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     fix name mismatch
| | | | | | | | | | 
| | | | | | | | | | M	examples/undocumented/java_modular/minimal_test.java
| | | | | | | | | |           
* | | | | | | | | | commit 4335fd636225a208ad5612882508b71f67e554b0
| |/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | | | | |   Date:   Fri Apr 29 23:50:20 2011 +0400
| | | | | | | | |   
| | | | | | | | |       Added function used to compute area under curve to CMath
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/lib/Mathematics.h
| | | | | | | | |          
* | | | | | | | | commit c962ae93df4f8484a8ee304e500c93bead5ca2bb
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:22:43 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Some fixes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | | |          
* | | | | | | | | commit 5fe27f4e7a861eff33eba493cb58c03c1cc6522d
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:07:50 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Some doc additions
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit 72356c1ec9dac4a0c6ae7d0f6c30e39bf8de504c
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 02:02:29 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Modified warnings in case of rates are uninitialized
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | |          
* | | | | | | | | commit 957380000c6464978ad901575c6e49d2b2c7d7aa
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Wed Apr 27 01:59:44 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Integrated CPRCEvaluation to modular interface
| | | | | | | | | 
| | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | |          
* | | | | | | | | commit 1c556511e5d93e638ed134cd00a09aac0e52bb46
|/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | |   Date:   Wed Apr 27 01:59:10 2011 +0400
| | | | | | | |   
| | | | | | | |       Added class PRCEvaluation for evaluating Precision Recall Curves and
| | | | | | | |       auPRC scores
| | | | | | | |   
| | | | | | | |   A	src/libshogun/evaluation/PRCEvaluation.cpp
| | | | | | | |   A	src/libshogun/evaluation/PRCEvaluation.h
| | | | | | | |         
* | | | | | | | commit ade1c3da67476135342e441fec448dbaee0b8381
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 21:29:48 2011 +0200
| | | | | | | | 
| | | | | | | |     minimal java example
| | | | | | | | 
| | | | | | | | A	examples/undocumented/java_modular/minimal_test.java
| | | | | | | |         
* | | | | | | | commit 7233fdb7edf31ed6daed36feb94c1cec5b66ad72
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:33:38 2011 +0200
| | | | | | | | 
| | | | | | | |     Add missing includes for feature type and compressor type and re-enable
| | | | | | | |     init_shogun / exit_shogun such that these can be called from
| | | | | | | |     java_modular.
| | | | | | | | 
| | | | | | | | M	src/modular/Distance.i
| | | | | | | | M	src/modular/Features.i
| | | | | | | | M	src/modular/Kernel.i
| | | | | | | | M	src/modular/PreProc.i
| | | | | | | | M	src/modular/SGBase.i
| | | | | | | |         
* | | | | | | | commit 110c451a1e53c65406af7c6aca3d1cf8558b6d4e
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:32:29 2011 +0200
| | | | | | | | 
| | | | | | | |     Include linux path in jni generation and improve java detection for
| | | | | | | |     official jdk's.
| | | | | | | | 
| | | | | | | | M	src/configure
| | | | | | | |         
* | | | | | | | commit d91b6298cf89bd83d3482ee758b7a6cba2d6c1a9
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 18:30:36 2011 +0200
| | | | | | | | 
| | | | | | | |     Include FeatureType.h needed by these modules and drop unused classify
| | | | | | | |     function causing trouble in java modular.
| | | | | | | | 
| | | | | | | | M	src/libshogun/distance/Distance.h
| | | | | | | | M	src/libshogun/kernel/Kernel.h
| | | | | | | | M	src/libshogun/regression/KRR.h
| | | | | | | |         
* | | | | | | | commit 219ee4a65448d7c81b708222b965b0a3ceb5d4b5
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 16:29:50 2011 +0200
| | | | | | | | 
| | | | | | | |     Rename base class Evaluation to BaseEvaluation to fix naming clash in
| | | | | | | |     java_modular
| | | | | | | | 
| | | | | | | | M	src/modular/Evaluation.i
| | | | | | | |         
* | | | | | | | commit c08a1e43d6f464c48789326ad1b865d6b2d14512
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Tue Apr 26 14:50:21 2011 +0200
| | | | | | | | 
| | | | | | | |     add clapack_dpotri definition to header file
| | | | | | | | 
| | | | | | | | M	src/libshogun/lib/lapack.h
| | | | | | | |           
* | | | | | | |   commit 2bf3c8ff29ac7400b56cec60f14d7c93b2df6433
|\ \ \ \ \ \ \ \  Merge: 73a3e28 69cd038
| | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | Date:   Mon Apr 25 00:40:09 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Merge git://github.com/mcopik/shogun
| | | | | | | | |          
| * | | | | | | | commit 69cd038b56c8aa50b791e13d16ca209f9d39e8d7
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Mon Apr 25 00:20:37 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Previous versions of matrix/vector functions
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | |          
| * | | | | | | | commit a98e5d10dab97295c2c860f595d7d6ab66303d13
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Sat Apr 23 01:38:11 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Fixes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | |          
| * | | | | | | | commit 38267bfa885832a6219efc4938efb9ebad39eb2e
| | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | Date:   Sat Apr 23 01:07:15 2011 +0200
| | | | | | | | | 
| | | | | | | | |     Support for NDArray in CAsciiFile
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/lib/AsciiFile.cpp
| | | | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | |            
* | | | | | | | |   commit 73a3e28604cade74cb985dee04fc4552e88dbeeb
|\ \ \ \ \ \ \ \ \  Merge: 950ca60 30358c1
| | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | Date:   Mon Apr 25 00:28:31 2011 +0200
| | | | | | | | | | 
| | | | | | | | | |     Merge git://github.com/Siddharthk/shogun
| | | | | | | | | |           
| * | | | | | | | | commit 30358c1efe8a84d426ef7af91160047de7aa2c02
| | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | Date:   Wed Apr 20 19:23:01 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Added class CLoss,Added function vector_multiply,Removed Whitespaces
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | A	src/libshogun/lib/Loss.h
| | | | | | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | | | | | |           
| * | | | | | | | | commit 8111676624957f34a5647df256627e46c3b8eac1
| | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | Date:   Mon Apr 18 16:56:13 2011 +0530
| | | | | | | | | | 
| | | | | | | | | |     Fixed error
| | | | | | | | | | 
| | | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | |             
| * | | | | | | | |   commit a46c0d7d5bc7dccdbfde5b6e2ef4a4a5e19bfdd2
| |\ \ \ \ \ \ \ \ \  Merge: 5738348 fec377d
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 16:25:14 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Merge commit 'upstream/master'
| | | | | | | | | | |            
| * | | | | | | | | | commit 57383485143ed43f94bba32710e97e26bf14df24
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 16:12:31 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     Removed Whitespaces
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | | M	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | |              
| * | | | | | | | | |   commit 0fe2e34719ae61cfa97f56af48cebb27863ee34b
| |\ \ \ \ \ \ \ \ \ \  Merge: 47f74d3 f260d7a
| | |_|_|_|_|/ / / / /  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| |/| | | | | | | | |   Date:   Mon Apr 18 15:56:09 2011 +0530
| | | | | | | | | | |   
| | | | | | | | | | |       SGD-QN Classifier added
| | | | | | | | | | |            
| | * | | | | | | | | commit f260d7a1e20ff713d027afb565de0c97fbaec20f
| | | | | | | | | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | | | | | | | | Date:   Mon Apr 18 14:41:11 2011 +0530
| | | | | | | | | | | 
| | | | | | | | | | |     SGD-QN Classifier added
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | | | | | | A	src/libshogun/classifier/svm/SGDQN.cpp
| | | | | | | | | | | A	src/libshogun/classifier/svm/SGDQN.h
| | | | | | | | | | | M	src/modular/Classifier.i
| | | | | | | | | | |            
* | | | | | | | | | | commit 950ca603712d464fb491cf359a65a27c416f64e7
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:03:49 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix access of protected member variable
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | | | |            
* | | | | | | | | | | commit 37a2bf8a685a09fdf46badd4c664c5248ea3d0a6
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:03:10 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix ifdefs - causing compilation failure
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | | | |            
* | | | | | | | | | | commit 5a5e2d717a01b287b26614ad6623d5e9ca1d93d1
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Mon Apr 25 00:01:00 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     fix typo in documentation
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | |              
* | | | | | | | | | |   commit ea04aefdf9e700a94c455896c8e250bf5432eaa6
|\ \ \ \ \ \ \ \ \ \ \  Merge: f75fb0b 91ee80f
| | | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | | Date:   Sun Apr 24 22:49:35 2011 +0200
| | | | | | | | | | | | 
| | | | | | | | | | | |     Merge git://github.com/SergeyLisitsyn/shogun
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 91ee80ff7a2899146b33a73804702767ea166684
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Mon Apr 25 00:35:40 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Various style fixes and some safety issue with get_ROC()
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | | |             
| * | | | | | | | | | | commit df1e1a1a48ccd17995f260bbe73d92b5c936bac2
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sun Apr 24 23:45:42 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Fixes for fixes
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | |             
| * | | | | | | | | | | commit f84bbb5ad9493d67659eeed22ef6ab479d081b0a
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sun Apr 24 23:42:44 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Various fixes for CROCEvaluation class implementation
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 205b58c1e9bc5f7611c7464c279d99deab0880c6
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sat Apr 23 22:53:03 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Integrated CROCEvaluation to modular interfaces
| | | | | | | | | | | | 
| | | | | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | | | | |             
| * | | | | | | | | | | commit 9a944c087500b1e7431a6eee07f50badc9279748
| | | | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | | | Date:   Sat Apr 23 22:52:37 2011 +0400
| | | | | | | | | | | | 
| | | | | | | | | | | |     Added CROCEvaluation class for evaluating ROC curve and auROC
| | | | | | | | | | | | 
| | | | | | | | | | | | A	src/libshogun/evaluation/ROCEvaluation.cpp
| | | | | | | | | | | | A	src/libshogun/evaluation/ROCEvaluation.h
| | | | | | | | | | | |               
* | | | | | | | | | | |   commit f75fb0b02504325921d901fa6acc2328cbac9d72
|\ \ \ \ \ \ \ \ \ \ \ \  Merge: 7e1214f e6cec42
| | | | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | | | Date:   Sun Apr 24 22:48:41 2011 +0200
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     Merge branch 'master' of git://github.com/cwidmer/shogun
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit e6cec423b06a5db5eb69828ce8e0187f68f8a97e
| | | | | | | | | | | | | Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| | | | | | | | | | | | | Date:   Sun Apr 24 11:28:19 2011 +0200
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     merged old changes from local svn repo into git repo
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| | | | | | | | | | | | | M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| | | | | | | | | | | | |                
* | | | | | | | | | | | |   commit 7e1214ff646057f9df41896e38022d736dbd3e66
|\ \ \ \ \ \ \ \ \ \ \ \ \  Merge: 621c7f9 bd60ad6
| |_|_|_|_|_|_|_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | | | | | | |   Date:   Thu Apr 21 21:27:31 2011 +0200
| | | | | | | | | | | | |   
| | | | | | | | | | | | |       Merge branch 'master' of https://github.com/lionelc/shogun
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit bd60ad6ddcb31e535522587b794a5057ceb8ed95
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Thu Apr 21 15:14:07 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     minor changes -- fixed whitespace issues
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 928a0dc5178c356554574ed27d54d52e97dfc921
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Wed Apr 20 17:05:30 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     fix an error
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 4f45f39f6df8ad4c94b1062df4b8e09d364a795e
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Wed Apr 20 14:24:07 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     a minor modification: remove a "SG_UNSTABLE" statement
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 63fdbc6f997d4d01d85e65b95d2f5cb9bc6fc698
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Tue Apr 19 16:48:04 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     fill the blank (serialization) in TensorProductPairKernel.cpp
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.cpp
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit 8645931459aeac37697fafaa78679c3494ff9fa8
| | | | | | | | | | | | | Author: lionelc <ljiang@cct.lsu.edu>
| | | | | | | | | | | | | Date:   Tue Apr 19 16:08:13 2011 -0400
| | | | | | | | | | | | | 
| | | | | | | | | | | | |     added the serialization support in the same way for other classes in libshogun/kernel following yesterday's changes
| | | | | | | | | | | | | 
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/DistanceKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianMatchStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/GaussianShortRealKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/Kernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/KernelNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| | | | | | | | | | | | | M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SNPStringKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SNPStringKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.cpp
| | | | | | | | | | | | | M	src/libshogun/kernel/TensorProductPairKernel.h
| | | | | | | | | | | | |              
| * | | | | | | | | | | | commit ac8d700c693063acd498023fa4449e9219b48ea4
| | |_|/ / / / / / / / /  Author: lionelc <ljiang@cct.lsu.edu>
| |/| | | | | | | | | |   Date:   Mon Apr 18 05:36:20 2011 -0400
| | | | | | | | | | | |   
| | | | | | | | | | | |       some changes w.r.t parameter registration
| | | | | | | | | | | |       1. added an individual and virtual function register_param() -- separate from init() and becomes *protected* for now --- changed in Kernel.h & cpp
| | | | | | | | | | | |       2. added serialization support in the same way for SpectrumRBFKernel.h & cpp
| | | | | | | | | | | |   
| | | | | | | | | | | |   M	src/libshogun/kernel/Kernel.cpp
| | | | | | | | | | | |   M	src/libshogun/kernel/Kernel.h
| | | | | | | | | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| | | | | | | | | | | |   M	src/libshogun/kernel/SpectrumRBFKernel.h
| | | | | | | | | | | |             
* | | | | | | | | | | | commit 621c7f978f0224a607f7c3de221e4dc9285d8963
| |_|/ / / / / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | | | | | |   Date:   Thu Apr 21 20:50:24 2011 +0200
| | | | | | | | | | |   
| | | | | | | | | | |       fix DPOTRI <-> DPOTRF typo
| | | | | | | | | | |   
| | | | | | | | | | |   M	src/libshogun/lib/lapack.cpp
| | | | | | | | | | |              
* | | | | | | | | | |   commit 6ef3e7d7f19f94b147c8c567bb16fa622781a3a4
|\ \ \ \ \ \ \ \ \ \ \  Merge: 8dd9d87 c735498
| | |/ / / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | | | | | | |   Date:   Thu Apr 21 21:25:35 2011 +0400
| | | | | | | | | | |   
| | | | | | | | | | |       Merge remote branch 'upstream/master'
| | | | | | | | | | |            
| * | | | | | | | | | commit c735498cd0a133a8b83adf76ea2305995a5e3c93
| | |_|_|_|_|_|_|_|/  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | | | | | |   Date:   Thu Apr 21 06:53:30 2011 +0100
| | | | | | | | | |   
| | | | | | | | | |       Changes to Gaussian to compute the log PDF first
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | | | | | | | |   M	src/libshogun/distributions/Gaussian.h
| | | | | | | | | |             
| * | | | | | | | |   commit 02c32c330d728cceb3c66e6cee1a2de863d0e680
| |\ \ \ \ \ \ \ \ \  Merge: 6355705 c3d602c
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 20 23:43:02 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | | | | | | | |            
| * | | | | | | | | | commit 635570501641d47988ab3c64a0ebe1d52c42fd0f
| | | | | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | | | | Date:   Wed Apr 20 22:42:44 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     turn total_size into size_t type (array can be >2GB!) and add
| | | | | | | | | | |     whitespaces to improve readability
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | | |              
| * | | | | | | | | |   commit c332244848f3df2fc04021a4ed83841682cadedb
| |\ \ \ \ \ \ \ \ \ \  Merge: 60a6071 b2ea155
| | | |_|_|_|/ / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| | | | | | | |   Date:   Wed Apr 20 22:35:46 2011 +0200
| | | | | | | | | | |   
| | | | | | | | | | |       Merge branch 'master' of https://github.com/mcopik/shogun
| | | | | | | | | | |       
| | | | | | | | | | |       Conflicts:
| | | | | | | | | | |       	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit b2ea15508609708a3818307c29bd5bae88d469a4
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:45:11 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Another stupid mistake
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 28dbf884f702062b884e16a8b88be44ab5b9b74c
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:41:54 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Another simple fix
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | | |            
| | * | | | | | | | | commit 7d5e7ad9a1a1adfd6f77eba64699a6dd98796bf5
| | | | | | | | | | | Author: Marcin Copik <mcopik@gmail.com>
| | | | | | | | | | | Date:   Wed Apr 20 21:28:01 2011 +0200
| | | | | | | | | | | 
| | | | | | | | | | |     Fix
| | | | | | | | | | | 
| | | | | | | | | | | M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | | |            
| | * | | | | | | | | commit 0c42b05e375cb9c74a1685e265e19d8e80b4ff5d
| | | |_|_|_|/ / / /  Author: Marcin Copik <mcopik@gmail.com>
| | |/| | | | | | |   Date:   Wed Apr 20 21:24:28 2011 +0200
| | | | | | | | | |   
| | | | | | | | | |       Adding support for nd-arrays
| | | | | | | | | |   
| | | | | | | | | |   M	src/libshogun/lib/BinaryFile.cpp
| | | | | | | | | |   M	src/libshogun/lib/BinaryFile.h
| | | | | | | | | |   M	src/libshogun/lib/DataType.cpp
| | | | | | | | | |   M	src/libshogun/lib/DataType.h
| | | | | | | | | |           
* | | | | | | | | | commit 8dd9d87f9a46b2dd80735dd3687686dffabe3eec
| | | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | | Date:   Thu Apr 21 21:25:22 2011 +0400
| | | | | | | | | | 
| | | | | | | | | |     Added helper measure classes to modular interface
| | | | | | | | | | 
| | | | | | | | | | M	src/modular/Evaluation.i
| | | | | | | | | |           
* | | | | | | | | | commit 208365a7294b6455de0fbd8c42c0fc0ae6839c54
| |_|/ / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|/| | | | | | | |   Date:   Thu Apr 21 16:59:41 2011 +0400
| | | | | | | | |   
| | | | | | | | |       Fixed doc for ContingencyTableEvaluation, added some helper classes
| | | | | | | | |   
| | | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit c3d602c80bc1a73d743696160160dbf749de3bd7
| | | | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | | | Date:   Thu Apr 21 01:41:37 2011 +0400
| | | | | | | | | 
| | | | | | | | |     Fixed shameful mistypes
| | | | | | | | | 
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | | |          
* | | | | | | | | commit ed5f12fa05632c4d6c999057dad49346530d54d1
|/ / / / / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | |   Date:   Thu Apr 21 01:30:16 2011 +0400
| | | | | | | |   
| | | | | | | |       Added documentation, added precision measure
| | | | | | | |   
| | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | | | |   M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | | | |         
* | | | | | | | commit 60a607164b138810318f36f9ab27fa6a6c200c81
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:34:02 2011 +0200
| | | | | | | | 
| | | | | | | |     new tests are required
| | | | | | | | 
| | | | | | | | M	data
| | | | | | | |         
* | | | | | | | commit 0591e84d09d0a31c6a7986e97cf94320090b97dc
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:09:03 2011 +0200
| | | | | | | | 
| | | | | | | |     kernel should get 2 train objects
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| | | | | | | |         
* | | | | | | | commit 7ef69616f2d761d32daaa9c714153e8d65209e05
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 14:08:01 2011 +0200
| | | | | | | | 
| | | | | | | |     fix a long standing bug / crasher
| | | | | | | |     
| | | | | | | |     free_feature_vector was called with the wrong feature object
| | | | | | | | 
| | | | | | | | M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| | | | | | | |         
* | | | | | | | commit c8816f509a661ed53c166d843ebfb7dcb6b8d75a
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:58:54 2011 +0200
| | | | | | | | 
| | | | | | | |     use only single threaded svrlight
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/regression_svrlight_modular.py
| | | | | | | |         
* | | | | | | | commit e9a7f862e96e2e77fd4f8216a6ceeea5ac380c5a
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:58:05 2011 +0200
| | | | | | | | 
| | | | | | | |     fix larank example (always C=1 was used before)
| | | | | | | | 
| | | | | | | | M	examples/undocumented/python_modular/classifier_larank_modular.py
| | | | | | | |         
* | | | | | | | commit 76bf7f75b1ddf7701606e02b7ce08fe48f023fb4
| | | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | | Date:   Wed Apr 20 11:56:03 2011 +0200
| | | | | | | | 
| | | | | | | |     Fix array out of bound errors as detected by valgrind and uninitialized memory reads.
| | | | | | | | 
| | | | | | | | M	src/libshogun/kernel/OligoStringKernel.cpp
| | | | | | | | M	src/libshogun/kernel/OligoStringKernel.h
| | | | | | | |         
* | | | | | | | commit 9b623544135234b2806d2bd74afdb50f1ed5b3e5
| |_|_|_|_|_|/  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | | |   Date:   Wed Apr 20 10:46:34 2011 +0200
| | | | | | |   
| | | | | | |       add example for avg perceptron
| | | | | | |   
| | | | | | |   A	examples/undocumented/python_modular/classifier_averaged_perceptron_modular.py
| | | | | | |        
* | | | | | | commit 080b05b6e42163a47a85ae26c472cb8e00c03613
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 17:32:46 2011 +0200
| | | | | | | 
| | | | | | |     update data to include new tests
| | | | | | | 
| | | | | | | M	data
| | | | | | |        
* | | | | | | commit 708001fc848069e3a06e962d75e3c7da537a487a
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 17:30:09 2011 +0200
| | | | | | | 
| | | | | | |     add a --debug option to see where things fail
| | | | | | | 
| | | | | | | M	testsuite/python_modular/tester.py
| | | | | | |        
* | | | | | | commit e5fd6cb2ce507fa981b62cc63ee156a806cd19b2
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 16:01:25 2011 +0200
| | | | | | | 
| | | | | | |     fix serialization and a crasher when d > len
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | | | |        
* | | | | | | commit a5451f1e5d89fab4f052c6ac2bc86d3579ae4abc
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 16:01:04 2011 +0200
| | | | | | | 
| | | | | | |     whitespace changes
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | | |        
* | | | | | | commit f2288bde06d9f5a0b898a167719a2f9e2620e2f7
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 12:08:36 2011 +0200
| | | | | | | 
| | | | | | |     coding style fixes in ANOVAKernel
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | | | |        
* | | | | | | commit 45fbb3ddb2efdf3a0a8a3cd96607e44811b37aa7
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 11:57:57 2011 +0200
| | | | | | | 
| | | | | | |     remove test cause and change function name to match filename
| | | | | | | 
| | | | | | | M	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | | | | |        
* | | | | | | commit 4a754ba509c761c64f4e68c489fc68aee519f819
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 11:39:05 2011 +0200
| | | | | | | 
| | | | | | |     don't return anything just now - HISTOGRAM is not exposed to the outside
| | | | | | | 
| | | | | | | M	examples/undocumented/python/distribution_histogram.py
| | | | | | |        
* | | | | | | commit 51a285c8d227d464e46552c73f71a79b54c0bc0c
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Tue Apr 19 10:02:21 2011 +0200
| | | | | | | 
| | | | | | |     fix include paths to be relative to libshogun/
| | | | | | | 
| | | | | | | M	src/libshogun/lib/AsciiFile.h
| | | | | | | M	src/libshogun/lib/BinaryFile.h
| | | | | | | M	src/libshogun/lib/BitString.h
| | | | | | | M	src/libshogun/lib/Compressor.h
| | | | | | | M	src/libshogun/lib/DynInt.h
| | | | | | | M	src/libshogun/lib/GCArray.h
| | | | | | | M	src/libshogun/lib/HDF5File.h
| | | | | | | M	src/libshogun/lib/IndirectObject.h
| | | | | | | M	src/libshogun/lib/LibSVMFile.h
| | | | | | |        
* | | | | | | commit c2307bff9a0fc5262d30c632ab91fcf58e20bd6e
|/ / / / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | |   Date:   Tue Apr 19 10:02:02 2011 +0200
| | | | | |   
| | | | | |       show how to access mc svm alphas
| | | | | |   
| | | | | |   M	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| | | | | |         
* | | | | |   commit 6d779fb70c2ba92189655e189505124c8ec16aea
|\ \ \ \ \ \  Merge: aa579f9 8d2a5ff
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 18 22:39:26 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'gmm' of https://github.com/alesis/shogun
| | | | | | |        
| * | | | | | commit 8d2a5ffb147e39d6fa96496aaac818cca4a70501
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:34:59 2011 +0100
| | | | | | | 
| | | | | | |     Improved GMM.cpp formatting
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit 18132ed01228f072c06eaaf0e364def44ac34d45
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:25:08 2011 +0100
| | | | | | | 
| | | | | | |     Added newlines to GMM.cpp where needed
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit d981fb6f06f589bb5f06c08293923846a35b8c37
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 19:58:09 2011 +0100
| | | | | | | 
| | | | | | |     Fixes for GMM.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/clustering/GMM.cpp
| | | | | | |        
| * | | | | | commit 2fc753cdb38ee353e4e108e37e04088cfc107e0d
| | |_|_|_|/  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | |   Date:   Mon Apr 18 19:12:00 2011 +0100
| | | | | |   
| | | | | |       Added GMM with fixes
| | | | | |   
| | | | | |   A	src/libshogun/clustering/GMM.cpp
| | | | | |   A	src/libshogun/clustering/GMM.h
| | | | | |         
* | | | | |   commit aa579f934a89e981216d043efec0cf215340cb54
|\ \ \ \ \ \  Merge: 1be7c44 0e40f95
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 18 22:38:31 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of https://github.com/alesis/shogun
| | | | | | |        
| * | | | | | commit 0e40f95ea071c86a781097dc90ab65aa6dce4f16
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 21:29:19 2011 +0100
| | | | | | | 
| | | | | | |     Improved readability of Gaussian.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | |        
| * | | | | | commit 940d6bbe774115cc4e8ce66795764e7d590460b6
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 17:32:22 2011 +0100
| | | | | | | 
| | | | | | |     Fixed Gaussian.cpp
| | | | | | | 
| | | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | |        
| * | | | | | commit 3676086a20abd88d6c1ba8c54f526508f1db7381
| | | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | | Date:   Mon Apr 18 17:30:21 2011 +0100
| | | | | | | 
| | | | | | |     Removed GMM from this pull request
| | | | | | | 
| | | | | | | D	src/libshogun/clustering/GMM.cpp
| | | | | | | D	src/libshogun/clustering/GMM.h
| | | | | | |          
| * | | | | |   commit 8f3afd82190ad1c738807b61a6c8c2b101f54e2c
| |\ \ \ \ \ \  Merge: bd74574 152a967
| | |/ / / / /  Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | |   Date:   Mon Apr 18 17:27:39 2011 +0100
| | | | | | |   
| | | | | | |       Merge remote branch 'upstream/master'
| | | | | | |        
| * | | | | | commit bd74574be7e6e47c83bba97173fa5a3c62d8cd0d
| | |/ / / /  Author: Alesis Novik <alesisnov@gmail.com>
| |/| | | |   Date:   Mon Apr 18 06:13:40 2011 +0100
| | | | | |   
| | | | | |       A very simple and basic implementation of EM for GMM and fix for Gaussian.cpp.
| | | | | |   
| | | | | |   A	src/libshogun/clustering/GMM.cpp
| | | | | |   A	src/libshogun/clustering/GMM.h
| | | | | |   M	src/libshogun/distributions/Gaussian.cpp
| | | | | |       
* | | | | | commit 1be7c44d7b9e90d11550496075a787149ce056a6
| |/ / / /  Author: Ziyuan Lin <ziyuang@gmail.com>
|/| | | |   Date:   Mon Apr 18 23:32:02 2011 +0800
| | | | |   
| | | | |       Copyright infomation revised
| | | | |   
| | | | |   M	src/libshogun/kernel/BesselKernel.h
| | | | |      
* | | | | commit 152a967d4ba0c09417c4bdf3081dc715a2ae27c3
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Apr 18 16:47:12 2011 +0200
| | | | | 
| | | | |     fix include paths to be relative to libshogun/
| | | | | 
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |        
* | | | |   commit b65b23c738e1478a69115e3db0d023bd0a9942b3
|\ \ \ \ \  Merge: fec377d e998b23
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon Apr 18 16:42:06 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | |      
| * | | | commit e998b23d16e38c4654dc093ed5092462e3f00ada
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 17:23:28 2011 +0400
| | | | | 
| | | | |     Fixed modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 616455e34f14be6da504c9bdfb67bac5b6db23bb
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 17:23:03 2011 +0400
| | | | | 
| | | | |     Various fixes of evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | M	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | D	src/libshogun/evaluation/HelperEvaluationClasses.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit 4e9460661284ea70b8688f9897fdf73b289b19b7
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 16:28:09 2011 +0400
| | | | | 
| | | | |     Added HelperEvaluationClasses
| | | | | 
| | | | | A	src/libshogun/evaluation/HelperEvaluationClasses.h
| | | | |      
| * | | | commit 10e7a9940f9b0ce58b4f43e3416b5b53d83efeaa
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 16:27:32 2011 +0400
| | | | | 
| | | | |     Added CContingencyTableEvaluation class
| | | | | 
| | | | | A	src/libshogun/evaluation/ContingencyTableEvaluation.cpp
| | | | | A	src/libshogun/evaluation/ContingencyTableEvaluation.h
| | | | |      
| * | | | commit 25531d2c510ff79c4ae3e083922a407dc0caf44b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 15:42:59 2011 +0400
| | | | | 
| | | | |     Fixed modular interface for Evaluation
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 7cf067cb790106a10512c5267393e339a587593b
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 15:42:28 2011 +0400
| | | | | 
| | | | |     Changes in design of 'evaluation'
| | | | | 
| | | | | D	src/libshogun/evaluation/Accuracy.h
| | | | | D	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | |      
| * | | | commit db85186b5814a8990c616f3e3e1c3a04014dbbce
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:50:55 2011 +0400
| | | | | 
| | | | |     Fixed BinaryClassEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | |      
| * | | | commit b4b0a915195db32f5a8cf1601f31fb49dec44fbe
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:50:22 2011 +0400
| | | | | 
| | | | |     Redesigned binary class evaluation
| | | | | 
| | | | | D	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | D	src/libshogun/evaluation/BalancedError.cpp
| | | | | D	src/libshogun/evaluation/BalancedError.h
| | | | | A	src/libshogun/evaluation/BinaryClassEvaluation.cpp
| | | | | A	src/libshogun/evaluation/BinaryClassEvaluation.h
| | | | |      
| * | | | commit bc5f03b6f99356b2f75611acb2ddfb1aae1b399d
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 12:03:33 2011 +0400
| | | | | 
| | | | |     Fixed CBalancedError and added get_scores()
| | | | | 
| | | | | M	src/libshogun/evaluation/BalancedError.cpp
| | | | | M	src/libshogun/evaluation/BalancedError.h
| | | | |      
| * | | | commit 1c22e3bf0adb04373fe53e13b0d863236b879975
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 01:46:13 2011 +0400
| | | | | 
| | | | |     Integrated CBalancedError to modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 501d5510352704844d26eeb53d876001a3d7f176
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 01:45:39 2011 +0400
| | | | | 
| | | | |     Added CBalancedError class for evaluating balanced error
| | | | | 
| | | | | A	src/libshogun/evaluation/BalancedError.cpp
| | | | | A	src/libshogun/evaluation/BalancedError.h
| | | | |      
| * | | | commit d329a4036bed89ae1e9d0c82ea1dcd5783761302
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 18 00:15:26 2011 +0400
| | | | | 
| | | | |     Fixed doc for CAccuracy and CMulticlassAccuracy
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | M	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit d970fabc0af3fab77537040d0e5c9e8671f02b67
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:37:06 2011 +0400
| | | | | 
| | | | |     Fixed description of CAccuracy
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |        
| * | | |   commit a4c53ae0fa12cb0851cbaf2303c6d489e9ccca9e
| |\ \ \ \  Merge: bfb4cf5 47f74d3
| | |/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | |   Date:   Sun Apr 17 23:30:49 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |      
| * | | | commit bfb4cf5b6a2ed61cad6cfe9a49eac6096fea52fe
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:29:49 2011 +0400
| | | | | 
| | | | |     Integrated CMulticlassAccuracy to modular interface
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit d650843a2a060993298161589a909fd664f6b708
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:28:25 2011 +0400
| | | | | 
| | | | |     Removed Evaluation.cpp
| | | | | 
| | | | | D	src/libshogun/evaluation/Evaluation.cpp
| | | | |      
| * | | | commit 777642a214b79a32b085ec52280ea5a4d0619196
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:27:51 2011 +0400
| | | | | 
| | | | |     Introduced CMulticlassAccuracy for estimating accuracy of multiclass
| | | | |     labeling
| | | | | 
| | | | | A	src/libshogun/evaluation/MulticlassAccuracy.cpp
| | | | | A	src/libshogun/evaluation/MulticlassAccuracy.h
| | | | |      
| * | | | commit cadd0f0d366db1e088a4db747fdd00da0c7c6772
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:26:16 2011 +0400
| | | | | 
| | | | |     Fixed CAccuracy for proper evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |      
| * | | | commit c420c8fdca5f671446231f9f4083483b0f3c3d32
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:19:11 2011 +0400
| | | | | 
| | | | |     Fixed CAccuracy, now supports only 2-class evaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | |      
| * | | | commit 451cf8d17b34a93be91a149d5c181d7a0e481876
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 23:05:23 2011 +0400
| | | | | 
| | | | |     Modified naming and some implementation issues of CEvaluation
| | | | | 
| | | | | M	src/libshogun/evaluation/Accuracy.cpp
| | | | | M	src/libshogun/evaluation/Accuracy.h
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | | M	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | M	src/libshogun/evaluation/MeanSquaredError.h
| | | | |      
| * | | | commit f36b6e113d96a6b0bfdd58385627d655538c4b82
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 20:36:25 2011 +0400
| | | | | 
| | | | |     Fixed modular interface config for Evaluation
| | | | | 
| | | | | M	src/modular/Evaluation.i
| | | | |      
| * | | | commit 0e6c9282ac5bd206c793f69370cc58cd22bb29fd
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 20:35:49 2011 +0400
| | | | | 
| | | | |     Some fixes for Evaluation base class
| | | | | 
| | | | | A	src/libshogun/evaluation/Evaluation.cpp
| | | | | M	src/libshogun/evaluation/Evaluation.h
| | | | |        
| * | | |   commit 967a72ce43cf4111c2ce94a78c765e51902b8c7d
| |\ \ \ \  Merge: 69a5736 62093ee
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 19:15:21 2011 +0400
| | | | | | 
| | | | | |     Merge branch 'master' of github.com:SergeyLisitsyn/shogun
| | | | | |       
| | * | | | commit 62093eea803d3c508f4df07c1c6162d4a9775466
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:35:02 2011 +0400
| | | | | | 
| | | | | |     Removed unnecessary typemap added earlier
| | | | | | 
| | | | | | M	src/modular/Evaluation.i
| | | | | |         
| * | | | |   commit 69a5736a18127b4a906f8db300321279d7713937
| |\ \ \ \ \  Merge: 051923b 3cea610
| | |/ / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | |   Date:   Sun Apr 17 19:14:14 2011 +0400
| | | | | |   
| | | | | |       Merge remote branch 'upstream/master'
| | | | | |       
| * | | | | commit 051923bd05fe5b94358bfc06d39f23388d231bc9
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:25:16 2011 +0400
| | | | | | 
| | | | | |     Integrated CAccuracy and CMeanSquaredError to modular interfaces
| | | | | | 
| | | | | | M	src/modular/Evaluation.i
| | | | | |       
| * | | | | commit bb2d5e4d1b6c8d400b5e6df4073d2ff3db9ada31
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:24:40 2011 +0400
| | | | | | 
| | | | | |     Added CMeanSquaredError class for estimating regression models
| | | | | | 
| | | | | | A	src/libshogun/evaluation/MeanSquaredError.cpp
| | | | | | A	src/libshogun/evaluation/MeanSquaredError.h
| | | | | |       
| * | | | | commit 6d7d6306c380bf9ca3560281c00201e5c1214c4b
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:23:25 2011 +0400
| | | | | | 
| | | | | |     Added CAccuracy class for evaluating classifiers accuracy
| | | | | | 
| | | | | | A	src/libshogun/evaluation/Accuracy.cpp
| | | | | | A	src/libshogun/evaluation/Accuracy.h
| | | | | |       
| * | | | | commit c3d2bed87db52515fac678730fc2624608b22365
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Sun Apr 17 13:22:14 2011 +0400
| | | | | | 
| | | | | |     Added CEvaluation base class
| | | | | | 
| | | | | | A	src/libshogun/evaluation/Evaluation.h
| | | | | |       
* | | | | | commit fec377d97a711f87009f9c25cf87343e6b6de5f3
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Apr 18 11:47:30 2011 +0200
| | | | | | 
| | | | | |     add bessel kernel thanks ziyuan for the patch
| | | | | | 
| | | | | | M	src/libshogun/kernel/BesselKernel.cpp
| | | | | | M	src/libshogun/kernel/BesselKernel.h
| | | | | |       
* | | | | | commit 7f50fde1c195a977cfd6dbb0b93ad435294ccb50
| |_|/ / /  Author: Ziyuan Lin <ziyuang@gmail.com>
|/| | | |   Date:   Mon Apr 18 03:39:47 2011 +0800
| | | | |   
| | | | |       Implement Bessel kernel
| | | | |   
| | | | |   A	src/libshogun/kernel/BesselKernel.cpp
| | | | |   A	src/libshogun/kernel/BesselKernel.h
| | | | |   M	src/libshogun/kernel/DistanceKernel.h
| | | | |   M	src/libshogun/kernel/Kernel.h
| | | | |        
* | | | |   commit 47f74d372055436896f31241e725b81e3d7fa238
|\ \ \ \ \  Merge: 3cea610 68a9604
| |_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Apr 17 21:26:31 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/alesis/shogun
| | | | |      
| * | | | commit 68a96042837807a0637f2d57f65442d89ddd3b5e
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sun Apr 17 14:37:02 2011 +0100
| | | | | 
| | | | |     Changed constructor and init for PCACut, changed GUIPreProc so it would compile
| | | | | 
| | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | M	src/libshogun/preproc/PCACut.h
| | | | | M	src/libshogunui/GUIPreProc.cpp
| | | | |      
| * | | | commit ed0c21b9c804175aee7254ff5a6692f8591cda22
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:56:15 2011 +0100
| | | | | 
| | | | |     more formatting issues fixed
| | | | | 
| | | | | M	src/libshogun/lib/lapack.cpp
| | | | |      
| * | | | commit 0abc90d045d21f5899ed95014440ffb56cd33fcc
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:54:19 2011 +0100
| | | | | 
| | | | |     Whitespace issue and bracket formatting fixed
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/lib/lapack.cpp
| | | | |      
| * | | | commit 295a9b32e03fb3bb0dfb9a0373408a28d80e0b46
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 21:50:08 2011 +0100
| | | | | 
| | | | |     Added Gaussian PDF formula to description
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 35a0dc97a5ebb6784fe3bebef1174f964315321c
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 17:26:21 2011 +0100
| | | | | 
| | | | |     Fixed merging issues
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |        
| * | | |   commit 2c5197495753157e70dc1164beb63f89b32ff9aa
| |\ \ \ \  Merge: 69d407c ebf4cf6
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 17:22:22 2011 +0100
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |     
| | | | | |     Conflicts:
| | | | | |     	src/libshogun/distributions/Gaussian.h
| | | | | |       
| * | | | | commit 69d407cdfad0da9d299b5bc99a60e77a04d799a9
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 16:37:16 2011 +0100
| | | | | | 
| | | | | |     Better documentation for Gaussian.h
| | | | | | 
| | | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | |       
| * | | | | commit 562074dfc18d803992432d70d619311011162094
| | | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | | Date:   Sat Apr 16 16:01:39 2011 +0100
| | | | | | 
| | | | | |     added ifdef HAVE_LAPACK to Gaussian so it would compile for everyone. Added different conditions for PCACut
| | | | | | 
| | | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | | M	src/libshogun/lib/lapack.cpp
| | | | | | M	src/libshogun/lib/lapack.h
| | | | | | M	src/libshogun/preproc/PCACut.cpp
| | | | | | M	src/libshogun/preproc/PCACut.h
| | | | | |       
* | | | | | commit 3cea610e911bdec1036dcb664c4ad43e27893036
| |_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Sun Apr 17 05:41:53 2011 +0200
| | | | |   
| | | | |       A number of coding style fixes like
| | | | |       
| | | | |       - space between for and (
| | | | |       - for loops with single statement don't need brackets
| | | | |       etc
| | | | |   
| | | | |   M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | |      
* | | | | commit be871a88a81f017a06478f7126295c68f0332c31
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Sun Apr 17 03:26:17 2011 +0400
| | | | | 
| | | | |     Fixed destructor of GaussianNaiveBayes, fixed mistype in loop leading
| | | | |     to segfault in case of labels: k,k+1,...,n
| | | | | 
| | | | | M	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | | |        
* | | | |   commit 1ee51858439b0e491b5cbaf537a79da09a0c5940
|\ \ \ \ \  Merge: 9988d90 59777bf
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 16 22:52:03 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/kisa12012/shogun
| | | | | |       
| * | | | | commit 59777bf60d11d987afcf347ae8b61ed8b7e6b3ea
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 17:13:40 2011 +0900
| | | | | | 
| | | | | |     create Averaged Perceptron class
| | | | | | 
| | | | | | A	src/libshogun/classifier/AveragedPerceptron.cpp
| | | | | | A	src/libshogun/classifier/AveragedPerceptron.h
| | | | | | M	src/libshogun/classifier/Classifier.h
| | | | | | M	src/modular/Classifier.i
| | | | | |       
* | | | | | commit 9988d90e73960ad7a2f7ff8f5693db32bca6feaa
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Sat Apr 16 20:58:21 2011 +0200
| | | | | | 
| | | | | |     rename member variables to start with m_ to fix warnings
| | | | | | 
| | | | | | M	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | | | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | | | |       
* | | | | | commit c8026b1f91bd04468aa6e7c6363a267f53ef5d54
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Sat Apr 16 18:21:32 2011 +0200
| | | | | | 
| | | | | |     Configure fix
| | | | | | 
| | | | | | M	src/configure
| | | | | |       
* | | | | | commit 0911622e72293e263cfd39723735f95ee931f091
| |_|/ / /  Author: Jakub Jirku <jakub.jirku@gmail.com>
|/| | | |   Date:   Sat Apr 16 17:33:16 2011 +0200
| | | | |   
| | | | |       Mac OS BLAS and LAPACK support
| | | | |   
| | | | |   M	src/configure
| | | | |   M	src/libshogun/lib/lapack.h
| | | | |      
* | | | | commit ebf4cf6758a51bda57fabcc2b648af85f33ad8bf
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sat Apr 16 14:44:05 2011 +0200
| | | | | 
| | | | |     Add HAVE_LAPACK checks to Gaussian distribution
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |        
* | | | |   commit 6e6999c72fa88774c07d79c35ac8a5a5834ddac2
|\ \ \ \ \  Merge: fff70f5 c702400
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Sat Apr 16 11:32:34 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/alesis/shogun
| | | | |      
| * | | | commit c702400c9eed353766e368fd01af7c4cfa823333
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Sat Apr 16 01:40:22 2011 +0100
| | | | | 
| | | | |     Fixed
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | |      
| * | | | commit 6649160b4d3308f8a76f7c8b6f0126e6dd2e3c1a
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Fri Apr 15 00:15:58 2011 +0100
| | | | | 
| | | | |     Missed changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | |      
| * | | | commit 45097f7077d20648744dd900471a9b75ed70fbeb
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 23:55:39 2011 +0100
| | | | | 
| | | | |     Changes as requested
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit b4ec73ae1f98fe73caa0e04c618369ea502709f8
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 20:30:34 2011 +0100
| | | | | 
| | | | |     Requested changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | | M	src/libshogun/features/DotFeatures.cpp
| | | | | M	src/libshogun/features/DotFeatures.h
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 4af1074706505770b0014b2b43713f02720129b8
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 08:42:17 2011 +0100
| | | | | 
| | | | |     Bug fix
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 03b9618f8777c06bedf55f79c5e464e16d51ee10
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 06:41:10 2011 +0100
| | | | | 
| | | | |     Added Gaussian training(sort of) and mean and cov functions in Mathematics
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/lib/Mathematics.h
| | | | |      
| * | | | commit 3effb792dc3ae7e0b23d2663531b61b31ca9b116
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 06:00:07 2011 +0100
| | | | | 
| | | | |     Error changes
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit b3ef5826f4fa388fca5739da3eda56ef0f91102c
| | | | | Author: Alesis Novik <alesisnov@gmail.com>
| | | | | Date:   Thu Apr 14 05:41:40 2011 +0100
| | | | | 
| | | | |     Function for computing the Gaussian PDF added
| | | | | 
| | | | | M	src/libshogun/distributions/Gaussian.cpp
| | | | | M	src/libshogun/distributions/Gaussian.h
| | | | |      
| * | | | commit 2285840ef967a0ef2f35a4c6bfd822b88b993d79
| | |/ /  Author: Alesis Novik <alesisnov@gmail.com>
| |/| |   Date:   Thu Apr 14 05:25:21 2011 +0100
| | | |   
| | | |       Added basic Gaussian distribution, not all methods implemented yet
| | | |   
| | | |   A	src/libshogun/distributions/Gaussian.cpp
| | | |   A	src/libshogun/distributions/Gaussian.h
| | | |     
* | | | commit fff70f595ed547ed32ad16663f2693adb3412171
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 16:25:04 2011 +0200
| | | | 
| | | |     fix the get_name() functions in preprocs causing serialization to fail
| | | | 
| | | | M	src/libshogun/preproc/DecompressString.h
| | | | M	src/libshogun/preproc/KernelPCACut.h
| | | | M	src/libshogun/preproc/LogPlusOne.h
| | | | M	src/libshogun/preproc/NormDerivativeLem3.h
| | | | M	src/libshogun/preproc/NormOne.h
| | | | M	src/libshogun/preproc/PCACut.h
| | | | M	src/libshogun/preproc/PreProc.h
| | | | M	src/libshogun/preproc/PruneVarSubMean.h
| | | | M	src/libshogun/preproc/SimplePreProc.h
| | | | M	src/libshogun/preproc/SortUlongString.h
| | | | M	src/libshogun/preproc/SortWordString.h
| | | |     
* | | | commit 688b11c727302065743142e14d077cea353c93e9
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 16:15:22 2011 +0200
| | | | 
| | | |     Add example for snappy compression
| | | | 
| | | | M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| | | |     
* | | | commit d5998c54939053d64c46364444049bad9ca1a1c3
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 15:55:39 2011 +0200
| | | | 
| | | |     fix the fread size checks (that where causing breakage of various i/o tests)
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 11a53be82da30408bbd9412ba3fb4a8b7dcf1190
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Fri Apr 15 14:29:46 2011 +0200
| | |   
| | |       fix a number of issues related to the split of num_vectors /
| | |       num_vectors_total / max_string_length / max_string_length_total
| | |   
| | |   M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit 53e81436fd8cb819acab831ad2c500539ff751a9
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Fri Apr 15 09:19:52 2011 +0200
| | | 
| | |     fix the data related symlinks such that examples and tests run through
| | | 
| | | M	applications/arts/data
| | | M	applications/asp/data
| | | M	applications/easysvm/data
| | | M	applications/msplicer/data
| | | M	examples/undocumented/data
| | | M	testsuite/data
| | | M	testsuite/tests
| | |      
* | |   commit b1b5dfd3c5da26f14384d38194af805fb45f5011
|\ \ \  Merge: 1506cf6 9a54d0e
| | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | Date:   Fri Apr 15 02:11:23 2011 +0400
| | | | 
| | | |     Merge remote branch 'upstream/master'
| | | |     
| * | | commit 9a54d0e81b943f9871af7d4565e94d1c22175173
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Fri Apr 15 00:10:40 2011 +0200
| | | | 
| | | |     fix another fread caused error
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 1506cf68e8bd63aba9affe4cc4d38c45e7a7dc70
|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | |   Date:   Fri Apr 15 02:07:30 2011 +0400
| | |   
| | |       Refactored whole preproc for proper overloading of get_name and
| | |       get_type
| | |   
| | |   M	src/libshogun/preproc/DecompressString.h
| | |   M	src/libshogun/preproc/KernelPCACut.cpp
| | |   M	src/libshogun/preproc/KernelPCACut.h
| | |   M	src/libshogun/preproc/LogPlusOne.cpp
| | |   M	src/libshogun/preproc/LogPlusOne.h
| | |   M	src/libshogun/preproc/NormDerivativeLem3.cpp
| | |   M	src/libshogun/preproc/NormDerivativeLem3.h
| | |   M	src/libshogun/preproc/NormOne.cpp
| | |   M	src/libshogun/preproc/NormOne.h
| | |   M	src/libshogun/preproc/PCACut.cpp
| | |   M	src/libshogun/preproc/PCACut.h
| | |   M	src/libshogun/preproc/PreProc.cpp
| | |   M	src/libshogun/preproc/PreProc.h
| | |   M	src/libshogun/preproc/PruneVarSubMean.cpp
| | |   M	src/libshogun/preproc/PruneVarSubMean.h
| | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.h
| | |   M	src/libshogun/preproc/SimplePreProc.h
| | |   M	src/libshogun/preproc/SortUlongString.cpp
| | |   M	src/libshogun/preproc/SortUlongString.h
| | |   M	src/libshogun/preproc/SortWordString.cpp
| | |   M	src/libshogun/preproc/SortWordString.h
| | |   M	src/libshogun/preproc/SparsePreProc.h
| | |   M	src/libshogun/preproc/StringPreProc.h
| | |    
* | | commit 76148d1c21fdcc952d474404a68c3cc5ca8f6b01
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Apr 14 22:55:32 2011 +0200
| | | 
| | |     Really fix warnings in stringfeatures.
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit cf8098f721599c283683b9ca022394abd51d8364
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Thu Apr 14 22:55:03 2011 +0200
| | | 
| | |     add space after if
| | | 
| | | M	src/libshogun/kernel/GaussianKernel.cpp
| | |    
* | | commit 710667cc01b84ee0b80cd984f971f86d948dfd7e
| | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | Date:   Thu Apr 14 22:39:17 2011 +0200
| | | 
| | |     replaced ASSERT by an if-check and SG_ERROR
| | | 
| | | M	src/libshogun/features/StringFeatures.h
| | |      
* | |   commit 82d8e345ebdbd74e667f888e4b59bc60fc8d5a2e
|\ \ \  Merge: bfcc8d3 32b1b14
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 22:18:53 2011 +0200
| | | | 
| | | |     Merge remote branch 'upstream/master'
| | | |       
| * | |   commit 32b1b14c5062f84338840ed72718a6abd7246d67
| |\ \ \  Merge: 698417c 5ac2b29
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Apr 14 22:14:47 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/yayo3/shogun
| | | | |      
| | * | | commit 5ac2b292b73d5779eaad5bc2273187bb499895ac
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Thu Apr 14 20:21:37 2011 +0200
| | | | | 
| | | | |     Mac OS gitignore update
| | | | | 
| | | | | M	.gitignore
| | | | |        
| | * | |   commit dd11b29803e5ce7608ae53589ea8e5cbd73e07c0
| | |\ \ \  Merge: 52c686a 65d3d14
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Thu Apr 14 19:54:10 2011 +0200
| | | | | | 
| | | | | |     Merge remote-tracking branch 'upstream/master'
| | | | | |       
| | * | | | commit 52c686a54eaaf16cb92a8a6c22610d09ea10330a
| | | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | | Date:   Thu Apr 14 19:53:40 2011 +0200
| | | | | | 
| | | | | |     Fix codestyle issues.
| | | | | | 
| | | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | | |       
| | * | | | commit c069b8e745adbbb915d63901eb27bc5a91c40cae
| | | |/ /  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | |/| |   Date:   Wed Apr 13 23:02:28 2011 +0200
| | | | |   
| | | | |       Minor documentation and code style fixes
| | | | |   
| | | | |   M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | |   M	src/libshogun/kernel/MultiquadricKernel.h
| | | | |   M	src/libshogun/kernel/PowerKernel.h
| | | | |        
| * | | |   commit 698417cc8a1f3cb01d427f32f7d0b7f9739cbfae
| |\ \ \ \  Merge: f14d1d6 2da8fc1
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 21:52:36 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | |         
| * | | | |   commit f14d1d662cb071550754ba188702a19395f412a0
| |\ \ \ \ \  Merge: 65d3d14 05a2219
| | |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | |   Date:   Thu Apr 14 19:12:49 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/serialhex/shogun
| | | | | |       
| | * | | | commit 05a2219f385c5b7f1ea619b083d0fc40d190d414
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Thu Apr 14 13:12:21 2011 -0400
| | | | | | 
| | | | | |     Small edit in comments
| | | | | | 
| | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | |       
| | * | | | commit c884b9055e649c2316c833205643667446576844
| | | | | | Author: Justin Patera <serialhex@gmail.com>
| | | | | | Date:   Thu Apr 14 13:00:58 2011 -0400
| | | | | | 
| | | | | |     Changed "variance" to "std_dev" as it actually uses the standard deviation to shift the normal distribution, not variance.
| | | | | | 
| | | | | | M	src/libshogun/lib/Mathematics.h
| | | | | |       
* | | | | | commit bfcc8d35411ff752b0d39067a261a1d9cfa49623
| |_|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | | |   Date:   Thu Apr 14 22:17:47 2011 +0200
| | | | |   
| | | | |       removed a bunch of warnings caused by an ignored return type by introducing asserts for the result of fread() calls.
| | | | |   
| | | | |   M	src/libshogun/features/StringFeatures.h
| | | | |      
* | | | | commit 2da8fc162a8344998cc0495c5dcbe329bc90f9b0
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:13:20 2011 +0200
| | | | | 
| | | | |     remove unnecessary NULL check
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | |      
* | | | | commit a334ac8d0caff116b5f449f3d5c8653109831d23
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:13:00 2011 +0200
| | | | | 
| | | | |     corrected signature for setter functions
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | |      
* | | | | commit 57b2e4fca3231f1a9b1a80a855a78b557cd2e134
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 21:11:28 2011 +0200
| | | | | 
| | | | |     corrected line for setter of subset indices of CStringFeatures
| | | | | 
| | | | | M	src/modular/Features.i
| | | | |        
* | | | |   commit 06a9d3ee312ef6116ba401edb7f97adeb7b0babc
|\ \ \ \ \  Merge: 9663e8f 65d3d14
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Thu Apr 14 21:06:32 2011 +0200
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |      
| * | | | commit 65d3d14fca25c3a0665e8f7c0fe20f674b203212
| |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Thu Apr 14 18:53:25 2011 +0200
| | | |   
| | | |       whitespace fix
| | | |   
| | | |   M	src/libshogun/classifier/Perceptron.cpp
| | | |       
| * | |   commit d1be826692fb853797158a4029d2077f959d7989
| |\ \ \  Merge: 67272f1 b9c1800
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Thu Apr 14 18:48:47 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/kisa12012/shogun
| | | | |        
| | * | |   commit b9c1800484293eaaae5ddebc4abfeabf7e0063d1
| | |\ \ \  Merge: 339835f 166a5bc
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 01:12:17 2011 +0900
| | | | | | 
| | | | | |     Merge remote branch 'upstream/master'
| | | | | |       
| | * | | | commit 339835f9193b83a53a4d84746e26833ea496d677
| | | | | | Author: Hidekazu Oiwa <hidekazu.oiwa@gmail.com>
| | | | | | Date:   Fri Apr 15 01:06:08 2011 +0900
| | | | | | 
| | | | | |     fix Perceptron algorithm
| | | | | | 
| | | | | | M	src/libshogun/classifier/Perceptron.cpp
| | | | | |       
| * | | | | commit 67272f11c82eafa6e1b1cc9c4a36b1a1a1256340
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 18:40:09 2011 +0200
| | | | | | 
| | | | | |     fix typo - it is KPCA*CUT*
| | | | | | 
| | | | | | M	src/libshogun/preproc/KernelPCACut.cpp
| | | | | |       
| * | | | | commit 5eebbace4b8f5c26172795ad765a5eec6652b85d
| | |/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | |   Date:   Thu Apr 14 18:39:22 2011 +0200
| | | | |   
| | | | |       Fix configure to disable any kind of optimization
| | | | |       
| | | | |       ...when --disable-optimization is selected.
| | | | |   
| | | | |   M	src/configure
| | | | |        
* | | | |   commit 9663e8fd97c8ee4fe24c322db7d21950c2b9a132
|\ \ \ \ \  Merge: 484f219 166a5bc
| |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | |   Date:   Thu Apr 14 16:18:57 2011 +0200
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |        
| * | | |   commit 166a5bc2bbd465e70f4168d5276c8896e0299ed1
| |\ \ \ \  Merge: a9d9eaf 601b8ab
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Thu Apr 14 15:21:02 2011 +0200
| | | | | | 
| | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | |       
| * | | | | commit a9d9eaf71d1e7be2dceba5ba2f051dbd50477059
| | |_|/ /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | |   Date:   Thu Apr 14 16:11:23 2011 +0400
| | | | |   
| | | | |       Refactored preproc package for using EPreProcType enum
| | | | |   
| | | | |   M	src/libshogun/preproc/DecompressString.h
| | | | |   M	src/libshogun/preproc/KernelPCACut.cpp
| | | | |   M	src/libshogun/preproc/LogPlusOne.cpp
| | | | |   M	src/libshogun/preproc/NormDerivativeLem3.cpp
| | | | |   M	src/libshogun/preproc/NormOne.cpp
| | | | |   M	src/libshogun/preproc/PCACut.cpp
| | | | |   M	src/libshogun/preproc/PreProc.cpp
| | | | |   M	src/libshogun/preproc/PreProc.h
| | | | |   M	src/libshogun/preproc/PruneVarSubMean.cpp
| | | | |   M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| | | | |   M	src/libshogun/preproc/SimplePreProc.h
| | | | |   M	src/libshogun/preproc/SortUlongString.cpp
| | | | |   M	src/libshogun/preproc/SortWordString.cpp
| | | | |   M	src/libshogun/preproc/SparsePreProc.h
| | | | |   M	src/libshogun/preproc/StringPreProc.h
| | | | |      
* | | | | commit 484f21965581e5bf4b27f44c6cf4a241da653783
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:18:21 2011 +0200
| | | | | 
| | | | |     comment copy paste error corrected
| | | | | 
| | | | | M	src/libshogun/features/StringFeatures.h
| | | | |      
* | | | | commit e6917d4e9aa0ce45eddb02f48d6f011e776cbe12
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:18:04 2011 +0200
| | | | | 
| | | | |     added setter for subset indices for swig
| | | | | 
| | | | | M	src/libshogun/features/Features.cpp
| | | | | M	src/libshogun/features/Features.h
| | | | |      
* | | | | commit f4a38d4f66a298e700ce765ae334e03c8586848c
| | | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | | Date:   Thu Apr 14 16:16:53 2011 +0200
| | | | | 
| | | | |     added lines for CFeatures's getter and setter of subset indices
| | | | | 
| | | | | M	src/modular/Features.i
| | | | |      
* | | | | commit 5c1c73860518b1d304fd5b62581e73262141ef1d
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| | |   Date:   Thu Apr 14 15:58:06 2011 +0200
| | | |   
| | | |       made setter for subset and index conversion virtual
| | | |   
| | | |   M	src/libshogun/features/Features.h
| | | |   M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 601b8ab8142906acb06462f0496b0c5a1af49311
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 15:04:35 2011 +0200
| | | | 
| | | |     max_string_length adjustments with respect to subsets
| | | |     copy_features() now works woth subsets
| | | |     code cleanups
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 0bd912d965e8020c69c9a9ec3dcbf7abae37065c
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 15:04:16 2011 +0200
| | | | 
| | | |     added getter for subset matrix that is swig compatible
| | | |     small changed to std getter
| | | |     method subset_idx_conversion() is now not pure virtual anymore
| | | |     added comments
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | |     
* | | | commit 1a5cadc431105a5248ebf1cdca45ae6583b4f5ac
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 13:34:05 2011 +0200
| | | | 
| | | |     coding style fix
| | | | 
| | | | M	src/libshogun/features/Features.h
| | | |     
* | | | commit ea6b156ba78596ce0e8642010b50f57dbffeb192
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 13:27:24 2011 +0200
| | | | 
| | | |     corrections of copy/paste error that caused compile error for python_modular
| | | |     
| | | |     appending from another string features instances now only appends a subset, if one is defined
| | | | 
| | | | M	src/libshogun/features/StringFeatures.h
| | | |     
* | | | commit 87d0bbac97f345d0dde33e3cf9b7d32bd8c51a83
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Thu Apr 14 12:54:29 2011 +0200
| | | | 
| | | |     applied all discussed changes
| | | |     -some changes to names
| | | |     -some errors
| | | |     -some design changes
| | | | 
| | | | M	src/libshogun/features/Features.cpp
| | | | M	src/libshogun/features/Features.h
| | | | M	src/libshogun/features/StringFeatures.h
| | | |       
* | | |   commit 9d840cd31dc5c01b031e0213eeacd16dc16a3212
|\ \ \ \  Merge: 4c0b38f f6f47f3
| |/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | |   Date:   Thu Apr 14 10:59:06 2011 +0200
| | | |   
| | | |       Merge remote branch 'upstream/master'
| | | |     
| * | | commit f6f47f306614d0b48ce3614ee7058f3ab31fa968
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Wed Apr 13 22:04:20 2011 +0200
| | | | 
| | | |     Get histogram to reliably work in SNPFeatures
| | | | 
| | | | M	src/libshogun/features/SNPFeatures.cpp
| | | |     
* | | | commit 4c0b38f7f609133e97328b3a39cd6b4e4c3aa899
|/ / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | |   Date:   Wed Apr 13 18:17:09 2011 +0200
| | |   
| | |       implemented subset access for CFeatures and CStringFeatures
| | |   
| | |   M	src/libshogun/features/Features.cpp
| | |   M	src/libshogun/features/Features.h
| | |   M	src/libshogun/features/StringFeatures.h
| | |    
* | | commit 87257067bbb18d063322bce70c3db3a947f2be61
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 14:25:40 2011 +0200
| | | 
| | |     Draft a histogram function.
| | | 
| | | M	src/libshogun/features/SNPFeatures.cpp
| | | M	src/libshogun/features/SNPFeatures.h
| | |    
* | | commit 1371376242f09ce9907c464dc9f913fa0cb1637e
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 14:24:50 2011 +0200
| | | 
| | |     rename width to m_width too
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/ExponentialKernel.h
| | |    
* | | commit cce0b5ddb7615dd1c2b6ea3fcc0815873331583a
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:31:50 2011 +0400
| | | 
| | |     Added python_modular examples for kernels introduced earlier
| | | 
| | | A	examples/undocumented/python_modular/kernel_cauchy_modular.py
| | | A	examples/undocumented/python_modular/kernel_circular_modular.py
| | | A	examples/undocumented/python_modular/kernel_distantsegments_modular.py
| | | A	examples/undocumented/python_modular/kernel_exponential_modular.py
| | | A	examples/undocumented/python_modular/kernel_inversemultiquadric_modular.py
| | | A	examples/undocumented/python_modular/kernel_log_modular.py
| | | A	examples/undocumented/python_modular/kernel_multiquadric_modular.py
| | | A	examples/undocumented/python_modular/kernel_power_modular.py
| | | A	examples/undocumented/python_modular/kernel_rationalquadratic_modular.py
| | | A	examples/undocumented/python_modular/kernel_spherical_modular.py
| | | A	examples/undocumented/python_modular/kernel_spline_modular.py
| | | A	examples/undocumented/python_modular/kernel_tstudent_modular.py
| | | A	examples/undocumented/python_modular/kernel_wave_modular.py
| | | A	examples/undocumented/python_modular/kernel_wavelet_modular.py
| | |    
* | | commit e805a2cb8ec7cf8acc1b792a5503c6a9945871a5
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:24:15 2011 +0400
| | | 
| | |     Integrated some kernels to Kernel.i
| | | 
| | | M	src/modular/Kernel.i
| | |    
* | | commit 42ec6c9d81d170d3060da38723af66dadba7473b
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Wed Apr 13 13:23:25 2011 +0400
| | | 
| | |     Fixed ExponentialKernel
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/ExponentialKernel.h
| | |    
* | | commit 388d63457ae6263fea13db7dee46e13428ef7e2a
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 09:02:38 2011 +0200
| | | 
| | |     minor code reshuffling and verious coding style fixes in the recently added kernels
| | | 
| | | M	src/libshogun/kernel/CircularKernel.cpp
| | | M	src/libshogun/kernel/CircularKernel.h
| | | M	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | | M	src/libshogun/kernel/DistantSegmentsKernel.h
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | | M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | M	src/libshogun/kernel/MultiquadricKernel.h
| | | M	src/libshogun/kernel/PowerKernel.h
| | | M	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/TStudentKernel.cpp
| | | M	src/libshogun/kernel/WaveKernel.cpp
| | | M	src/libshogun/kernel/WaveKernel.h
| | | M	src/libshogun/kernel/WaveletKernel.cpp
| | | M	src/libshogun/kernel/WaveletKernel.h
| | | M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| | |    
* | | commit b0e729e67ad9f0e9d5724a6ccaca99ab45020897
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 09:01:04 2011 +0200
| | | 
| | |     Fix duplicate case entry for MultiQuadric Kernel
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | |    
* | | commit c010bae29396a61914bf620a9b3a68efb219dbcc
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Wed Apr 13 08:36:04 2011 +0200
| | | 
| | |     Introduce Multiquadric kernel. Thanks Joanna Stocka for the patch.
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | | A	src/libshogun/kernel/MultiquadricKernel.cpp
| | | A	src/libshogun/kernel/MultiquadricKernel.h
| | | M	src/modular/Kernel.i
| | |    
* | | commit 6e53c49c24fdf51e440816c486e73d908a88ca3c
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Wed Apr 13 08:34:20 2011 +0200
| |   
| |       don't assert anything when registering parameters
| |   
| |   M	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| |     
* |   commit 8b483bf29620e3166d5c9b79df6c61133e19831d
|\ \  Merge: 1e6858d 36bbddd
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Apr 12 19:27:22 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/yayo3/shogun
| | |    
| * | commit 36bbddd080672684c1944c9175dcbeff28ee5045
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 17:52:48 2011 +0200
| | | 
| | |     Documentation formula fix
| | | 
| | | M	src/libshogun/kernel/LogKernel.h
| | | M	src/libshogun/kernel/PowerKernel.h
| | |      
* | |   commit 1e6858d255ef2044c8f5d6240c95d3fe915730c1
|\ \ \  Merge: 238e9ca 132aa7c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| | |   Date:   Tue Apr 12 15:56:59 2011 +0200
| | |   
| | |       Merge branch 'master' of https://github.com/yayo3/shogun
| | |    
| * | commit 132aa7c31ca0d8cd8dc422a24da8b552916b126e
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 15:47:08 2011 +0200
| | | 
| | |     configure optimization option
| | | 
| | | M	src/configure
| | |    
| * | commit fc966b26327725ce1557e6c7bf3db96e79c54704
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 15:16:04 2011 +0200
| | | 
| | |     Darwin configure cleanup fix
| | | 
| | | M	src/configure
| | |    
| * | commit 4c044bf331d0106222cb75f364d8c68aaa48b87d
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 14:52:37 2011 +0200
| | | 
| | |     configure debug fix
| | | 
| | | M	src/configure
| | |    
| * | commit 7401fb4ba04062e221129734f219426e8e4fa020
| | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | Date:   Tue Apr 12 14:38:12 2011 +0200
| | | 
| | |     Darwin Makefile fix
| | | 
| | | M	src/Makefile
| | |      
| * |   commit 36bce0d73b039ce32d2f42009f4f47feac7ddd16
| |\ \  Merge: 7bb3e5e 248812b
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 14:05:19 2011 +0200
| | | | 
| | | |     Merge remote-tracking branch 'upstream/master'
| | | |     
| * | | commit 7bb3e5e051e2b54c009347d24e59322d7d3f2ae5
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 10:56:41 2011 +0200
| | | | 
| | | |     Kernel name fixes
| | | | 
| | | | M	src/libshogun/kernel/LogKernel.h
| | | | M	src/libshogun/kernel/PowerKernel.h
| | | |     
| * | | commit c1c898fa36ba4e99fef43a462285a542764aadaa
| | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | Date:   Tue Apr 12 10:48:25 2011 +0200
| | | | 
| | | |     Makefile, configure and build env improvements
| | | | 
| | | | M	.gitignore
| | | | M	src/Makefile
| | | | M	src/configure
| | | |     
* | | | commit 238e9cad7688e81549a44b60440789d04237245c
| |/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| |   Date:   Tue Apr 12 14:24:41 2011 +0200
| | |   
| | |       fix include path to be relative to libshogun/
| | |   
| | |   M	src/libshogun/classifier/GaussianNaiveBayes.h
| | |    
* | | commit 248812b64bb463ea1ef1718074cd269ba2132b0e
|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
| |   Date:   Tue Apr 12 14:04:24 2011 +0200
| |   
| |       fix minor compile error - hurray copy & paste
| |   
| |   M	src/libshogun/lib/Mathematics.h
| |     
* |   commit bda6e6eb456f6f660c6997537b133077ccfd85ab
|\ \  Merge: e5fa152 b677245
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Tue Apr 12 09:44:03 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/serialhex/shogun
| | |    
| * | commit b6772453e724781b9d0745544f151ef23885967d
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 03:39:48 2011 -0400
| | | 
| | |     Made convenience functions randn_float & randn_double for standard normal random variables.  Also edited comment on abs() function to reflect what it truly does.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 19c35fd0f15e59588930944fcaf8e2f025c6c8ea
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 03:19:03 2011 -0400
| | | 
| | |     Killing the default arguments on normal_random.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 74c94a502362c34ad3d406b537351d3fb158d30f
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Tue Apr 12 02:33:40 2011 -0400
| | | 
| | |     Changed mornal_random so that only the float32_t version has default arguments.
| | |     Unfortunately having float32_t foo(float32_t=1.0) && float64_t foo(float64_t=1.0) is ambiguous in SWIG, as it does not follow the typedefs or namespace qualifiers.  See "6.15.3 Ambiguity resolution and renaming" and the "Notes on %rename and %ignore" in the SWIG documentation for more information.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit 60218e1cd72de01b87545835784a754f2f592d08
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Mon Apr 11 06:15:05 2011 -0400
| | | 
| | |     The float64_t version has been commented out because mod python was not compiling correctly with it turned on... a fight for another day as i've been wresteling with graphs all night long and in ~3 hours i will have been up for 24 hours, YAY! 6:15am and sleeptime!!
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
| * | commit cc6bf94698f9f8a277537f3d545806c818bacd6c
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sun Apr 10 18:51:08 2011 -0400
| | | 
| | |     Initial commit for Normal Random Number generator.
| | | 
| | | M	src/libshogun/lib/Mathematics.h
| | |    
* | | commit e5fa1521a50313ad9949411f901c5aff69f4c943
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Tue Apr 12 01:20:32 2011 +0400
| | | 
| | |     Renamed GNB to GaussianNaiveBayes
| | | 
| | | A	examples/undocumented/python_modular/classifier_gaussiannaivebayes_modular.py
| | | D	examples/undocumented/python_modular/classifier_gnb_modular.py
| | | M	src/libshogun/classifier/Classifier.h
| | | D	src/libshogun/classifier/GNB.cpp
| | | D	src/libshogun/classifier/GNB.h
| | | A	src/libshogun/classifier/GaussianNaiveBayes.cpp
| | | A	src/libshogun/classifier/GaussianNaiveBayes.h
| | | M	src/modular/Classifier.i
| | |    
* | | commit 979e3032f4570ff03e30f7e7cef96dfda09c2f6c
| |/  Author: Soeren Sonnenburg <sonne@debian.org>
|/|   Date:   Mon Apr 11 22:53:42 2011 +0200
| |   
| |       fix make doc / make install targets for csharp,lua,...
| |   
| |   M	src/Makefile.template
| |     
* |   commit abe1f108c3bd28e58fd41b07ac23f0f790e6aad4
|\ \  Merge: dd3033b 03db6ec
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 21:51:15 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | |    
| * | commit 03db6ecede68ecbd31d9076ba118f9db0e803338
| | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | Date:   Mon Apr 11 22:50:25 2011 +0400
| | | 
| | |     Added type checking and corrected some mistype in description
| | | 
| | | M	src/libshogun/classifier/GNB.cpp
| | | M	src/libshogun/classifier/GNB.h
| | |      
* | |   commit dd3033bfc3644b682e9714043c581f62267e5a5d
|\ \ \  Merge: 34b078e 520f75c
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 21:42:11 2011 +0200
| | | | 
| | | |     Merge branch 'master' of https://github.com/vzxzcz/shogun into klaus
| | | |       
| * | |   commit 520f75c62ed534d1998bc2787153ecff957f7a1d
| |\ \ \  Merge: 47bc5b4 7ba79c1
| | |/ /  Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | |   Date:   Mon Apr 11 18:41:13 2011 +0200
| | | |   
| | | |       Merge
| | | |     
| * | | commit 47bc5b4b4a92ee086de115e9b59dc113a2050a98
| | | | Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | | Date:   Mon Apr 11 18:27:29 2011 +0200
| | | | 
| | | |     SparsePolyFeatures and RationalQuadraticKernel post-review fixes
| | | | 
| | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | M	src/libshogun/kernel/RationalQuadraticKernel.h
| | | |     
| * | | commit ca983ebc6ff3978fe2fbdc423447f87b9b1c9107
| | | | Author: Rafał Surowiecki <rafal@surowiecki.pl>
| | | | Date:   Mon Apr 11 17:02:01 2011 +0200
| | | | 
| | | |     +Rational Quadric Kernel
| | | |     
| | | |     +Sparse Poly Features serialization
| | | | 
| | | | M	src/libshogun/features/SparsePolyFeatures.cpp
| | | | M	src/libshogun/features/SparsePolyFeatures.h
| | | | A	src/libshogun/kernel/RationalQuadraticKernel.cpp
| | | | A	src/libshogun/kernel/RationalQuadraticKernel.h
| | | | M	src/modular/Kernel.i
| | | |     
* | | | commit 34b078eaf9f1abb749329b1d8da3439edf0f9957
| | | | Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| | | | Date:   Mon Apr 11 20:27:30 2011 +0200
| | | | 
| | | |     renamed member variable compact to m_compact. fixes a compile error
| | | | 
| | | | M	src/libshogun/kernel/GaussianKernel.h
| | | |     
* | | | commit 7f0b001a90e5be3d7e017b344611b81483470a7b
| |/ /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
|/| |   Date:   Mon Apr 11 19:21:42 2011 +0200
| | |   
| | |       Added implementation of the 'Distant Segments'-string-kernel
| | |   
| | |   A	src/libshogun/kernel/DistantSegmentsKernel.cpp
| | |   A	src/libshogun/kernel/DistantSegmentsKernel.h
| | |   M	src/libshogun/kernel/Kernel.h
| | |    
* | | commit 7ba79c15c9187b232c450f29ddd8662e18834f55
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 17:48:52 2011 +0200
| | | 
| | |     ignore generated *.cs in c# interface
| | | 
| | | M	.gitignore
| | |    
* | | commit 3bb5ffe33a28045907e919dcc95a1e30a1d0296c
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Mon Apr 11 17:47:45 2011 +0200
| | | 
| | |     minor coding style changes in gaussiankernel
| | | 
| | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | M	src/libshogun/kernel/GaussianKernel.h
| | |      
* | |   commit fcc745583ae2e55ed1015f93ba2d6f4915d95305
|\ \ \  Merge: 4f69e19 1237540
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 17:03:47 2011 +0200
| | | | 
| | | |     Merge branch 'master' of https://github.com/ahmaurya/shogun
| | | |     
| * | | commit 123754097604212eed13d24b1a0da5c5aa35a286
| | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | Date:   Mon Apr 11 15:29:28 2011 +0530
| | | | 
| | | |     Removed a bug and some whitespace issues
| | | | 
| | | | M	src/libshogun/kernel/CircularKernel.cpp
| | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | |     
| * | | commit 193c3d7f16a2dde4ad2455d5f1db07e317617cf6
| | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | Date:   Mon Apr 11 15:21:25 2011 +0530
| | | | 
| | | |     Documentation of Circular Kernel and Compact Gaussian Kernel
| | | | 
| | | | M	src/libshogun/kernel/CircularKernel.h
| | | | M	src/libshogun/kernel/GaussianKernel.h
| | | |       
| * | |   commit dd074c5fa910cfba9f5101aca9718e8a40fd04b0
| |\ \ \  Merge: 307bfbc 412d643
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 14:31:33 2011 +0530
| | | | | 
| | | | |     Merge remote branch 'shogun/master'
| | | | |     
| | | | |     Conflicts:
| | | | |     	src/libshogun/kernel/Kernel.cpp
| | | | |     	src/libshogun/kernel/Kernel.h
| | | | |     	src/modular/Kernel.i
| | | | |      
| * | | | commit 307bfbcc59eabc7e8fe369904e16c95e6bab627c
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 11:19:02 2011 +0530
| | | | | 
| | | | |     Addition of Circular Kernel
| | | | | 
| | | | | A	src/libshogun/kernel/CircularKernel.cpp
| | | | | A	src/libshogun/kernel/CircularKernel.h
| | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | M	src/libshogun/kernel/GaussianKernel.h
| | | | | M	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | M	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit cef67910ee4a2225952e645991957546d8fcddf0
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Mon Apr 11 09:27:20 2011 +0530
| | | | | 
| | | | |     Addition of compact option to GaussianKernel, Addition of InverseMultiQuadricKernel, Deletion of GaussianCompactKernel
| | | | | 
| | | | | D	src/libshogun/kernel/GaussianCompactKernel.cpp
| | | | | D	src/libshogun/kernel/GaussianCompactKernel.h
| | | | | M	src/libshogun/kernel/GaussianKernel.cpp
| | | | | M	src/libshogun/kernel/GaussianKernel.h
| | | | | A	src/libshogun/kernel/InverseMultiQuadricKernel.cpp
| | | | | A	src/libshogun/kernel/InverseMultiQuadricKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 73455c5c549415c0b252a8e99d90640e130e7660
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Sun Apr 10 21:03:15 2011 +0530
| | | | | 
| | | | |     Changing necessary Kernel.* files
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 211d32b9a99d04298ec1c7c7ec9bfa1071ec2b49
| | | | | Author: Abhinav Maurya <ahmaurya@gmail.com>
| | | | | Date:   Sun Apr 10 21:02:22 2011 +0530
| | | | | 
| | | | |     Addition of GaussianCompactKernel
| | | | | 
| | | | | A	src/libshogun/kernel/GaussianCompactKernel.cpp
| | | | | A	src/libshogun/kernel/GaussianCompactKernel.h
| | | | |      
* | | | | commit 4f69e1923f0a37484cbdaad5735ffed772a22c16
| | | | | Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| | | | | Date:   Mon Apr 11 16:51:19 2011 +0200
| | | | | 
| | | | |     fixed typos in README
| | | | | 
| | | | | M	README
| | | | |        
* | | | |   commit 4dd2b609fd1aba55e7d31a1318ac6a7d7f302c14
|\ \ \ \ \  Merge: 6a817ec f178f78
| |_|_|/ /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | |   Date:   Mon Apr 11 16:45:25 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/Bautista/shogun
| | | | |      
| * | | | commit f178f78446e9b8a446befb8ad6debbb2e61d915f
| | | | | Author: M.A. Bautista <miguelangelbautistamartin@gmail.com>
| | | | | Date:   Mon Apr 11 13:30:18 2011 +0200
| | | | | 
| | | | |     Final
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit 82232e3988233c31827f1bb5bb7556fe00f21bf8
| | | | | Author: M.A. Bautista <you@example.com>
| | | | | Date:   Mon Apr 11 13:25:03 2011 +0200
| | | | | 
| | | | |     Final fix
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit 16f73f3311fc89df05e1da471906362882b669c3
| | | | | Author: M.A. Bautista <you@example.com>
| | | | | Date:   Mon Apr 11 13:22:08 2011 +0200
| | | | | 
| | | | |     Fix documentation
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit d696914768c0711471d6fccb968f9c3e6dc6590f
| | | | | Author: M.A. Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Mon Apr 11 13:18:36 2011 +0200
| | | | | 
| | | | |     Documentation improvement
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit ec2283bc41f43eb35ed3cf6a42426112cbdabefa
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:45:00 2011 +0200
| | | | | 
| | | | |     Distance Id
| | | | |      Please enter the commit message for your changes. Lines starting
| | | | | 
| | | | | M	src/libshogun/distance/Distance.h
| | | | |      
| * | | | commit b781ce9ec421c437321cee82c0123b6e52dfab3a
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:36:00 2011 +0200
| | | | | 
| | | | |     Copyright issues.
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | | | |      
| * | | | commit 7c17248f3c51a8c1cbf2f1f0b80c087e77c79328
| | | | | Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | | | Date:   Sun Apr 10 22:28:59 2011 +0200
| | | | | 
| | | | |     Copyright issues.
| | | | | 
| | | | | M	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | | |      
| * | | | commit dbd011485b52a7c264d74f0eb6795f135c4bb4eb
| |/ / /  Author: Miguel Angel Bautista <bautista@ubuntu.(none)>
| | | |   Date:   Sun Apr 10 21:24:27 2011 +0200
| | | |   
| | | |       Attenuated Euclidean Distance for ECOC decoding patch.
| | | |   
| | | |   A	src/libshogun/distance/AttenuatedEuclidianDistance.cpp
| | | |   A	src/libshogun/distance/AttenuatedEuclidianDistance.h
| | | |   M	src/libshogun/distance/Distance.h
| | | |       
* | | |   commit 6a817ece47cd590687c82193020dffd408dbb6b7
|\ \ \ \  Merge: 85fa746 1733127
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Mon Apr 11 16:17:12 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun
| | | | |      
| * | | | commit 17331277b006f1e81d5dd05aeb3701fc1a1c9e96
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 17:24:14 2011 +0400
| | | | | 
| | | | |     Some safety changes
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | M	src/libshogun/classifier/GNB.h
| | | | |      
| * | | | commit e524ebc2dce46f2b3d686ed3483bda0b1b4d00b6
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 17:08:12 2011 +0400
| | | | | 
| | | | |     Fixed some naming and computing issues
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | M	src/libshogun/classifier/GNB.h
| | | | |      
| * | | | commit 10f5c50e5e9f31a7212e03680e8151ae7067a297
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:26:50 2011 +0400
| | | | | 
| | | | |     Added some comments
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | |      
| * | | | commit 3f064daf842944a09f0c08f51336dc3a9bd1826c
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:15:23 2011 +0400
| | | | | 
| | | | |     Removed SG_PRINT() from classify method
| | | | | 
| | | | | M	src/libshogun/classifier/GNB.cpp
| | | | |      
| * | | | commit 8c1c22bcfdca3f86ff0eb93ea0150e7350ab618a
| | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | Date:   Mon Apr 11 16:10:27 2011 +0400
| | | | | 
| | | | |     Added test for GNB classifier
| | | | | 
| | | | | A	examples/undocumented/python_modular/classifier_gnb_modular.py
| | | | |        
| * | | |   commit 24b8804ab8a614e79581efc4288465060be132ea
| |\ \ \ \  Merge: 81b2be8 1c6226d
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Apr 11 15:43:54 2011 +0400
| | | | | | 
| | | | | |     Merge remote branch 'origin/master'
| | | | | |       
| | * | | | commit 1c6226d9a998cb1824b101a15b99f516d421abe2
| | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | Date:   Mon Apr 11 15:30:43 2011 +0400
| | | | | | 
| | | | | |     Clean-up and some safety issues
| | | | | | 
| | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | M	src/libshogun/classifier/GNB.h
| | | | | |         
| | * | | |   commit f010b5e83014eb9c76701d7dfc37a460630af2e4
| | |\ \ \ \  Merge: 8d51feb f981d87
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:00:57 2011 +0400
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master'
| | | | | | |        
| | * | | | | commit 8d51feb0735de1bd5ab34b7745fbb5fde85e45e2
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:00:22 2011 +0400
| | | | | | | 
| | | | | | |     Almost-done CGNB classifier
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| | * | | | | commit 68e60839087fdbbb566b9115fa57da774e18835b
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 02:21:58 2011 +0400
| | | | | | | 
| | | | | | |     Modified CGNB for proper compilation
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| | * | | | | commit d431a9949845012db28253cc9092c3c8d6ca2daf
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 01:28:42 2011 +0400
| | | | | | | 
| | | | | | |     Added some draft implementation of CGNB
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| * | | | | | commit 81b2be8a1c0fabafcddf149ccbf56e80a6ea1858
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 15:43:04 2011 +0400
| | | | | | | 
| | | | | | |     Solved conflict with HistogramIntersectionKernel.h
| | | | | | | 
| | | | | | | A	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |          
| * | | | | |   commit 5432a2f4a78c2c67e4e3c46fca9cf58e892619f0
| |\ \ \ \ \ \  Merge: 43eaa06 f981d87
| | |/ / / / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| / / / /   Date:   Mon Apr 11 15:40:13 2011 +0400
| | |/ / / /    
| | | | | |         Merge remote branch 'upstream/master'
| | | | | |         
| * | | | |   commit 43eaa06407d05cf71a3aeb233c9d71f54e6f9ade
| |\ \ \ \ \  Merge: 6441828 01a33a7
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Mon Apr 11 01:27:43 2011 +0400
| | | | | | | 
| | | | | | |     Merge remote branch 'upstream/master'
| | | | | | |     
| | | | | | |     Conflicts:
| | | | | | |     	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |        
| * | | | | | commit 64418288877b61045cef55d5c1bd852a2d69326e
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sun Apr 10 23:03:39 2011 +0400
| | | | | | | 
| | | | | | |     Documented CGNB class and fixed dummy methods
| | | | | | | 
| | | | | | | M	src/libshogun/classifier/GNB.cpp
| | | | | | | M	src/libshogun/classifier/GNB.h
| | | | | | |        
| * | | | | | commit cedc7cb516263e87e0ba83ef6287b542515d4b54
| | | | | | | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | | | | | | Date:   Sun Apr 10 21:58:07 2011 +0400
| | | | | | | 
| | | | | | |     Corrected description for proper documentation generation (my fault).
| | | | | | | 
| | | | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | | |        
| * | | | | | commit 42d7f4962f6b8135f519ffb0ff32cf9966cb6660
| | |_|/ / /  Author: Sergey Lisitsyn <blackburn91@gmail.com>
| |/| | | |   Date:   Sun Apr 10 16:29:55 2011 +0400
| | | | | |   
| | | | | |       Added draft of Gaussian Naive Bayes classifier and integrated it to
| | | | | |       modular interfaces.
| | | | | |   
| | | | | |   M	src/libshogun/classifier/Classifier.h
| | | | | |   A	src/libshogun/classifier/GNB.cpp
| | | | | |   A	src/libshogun/classifier/GNB.h
| | | | | |   M	src/modular/Classifier.i
| | | | | |         
* | | | | |   commit 85fa7465650e719d1e6aec33ccd041675f845f08
|\ \ \ \ \ \  Merge: f981d87 d03da92
| |_|_|/ / /  Author: Soeren Sonnenburg <sonne@debian.org>
|/| | | | |   Date:   Mon Apr 11 16:14:30 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/sploving/shogun
| | | | | |       
| * | | | | commit d03da92f0bd11824690447b818edfcf751b6aeb1
| | | | | | Author: Baozeng Ding <sploving1@gmail.com>
| | | | | | Date:   Mon Apr 11 21:53:25 2011 +0800
| | | | | | 
| | | | | |     init shogun in lua
| | | | | | 
| | | | | | A	src/lua_modular/shogun.lua
| | | | | |       
* | | | | | commit f981d8778943cb92ebfb85935fba6f847aae5956
| | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | Date:   Mon Apr 11 12:05:08 2011 +0200
| | | | | | 
| | | | | |     remove SG_UNSTABLE & whitespace cleanup
| | | | | |     
| | | | | |     Serialization support is now there SG_UNSTABLE is no longer necessary.
| | | | | |     In addition remove trailing whitespaces.
| | | | | | 
| | | | | | M	src/libshogun/features/PolyFeatures.cpp
| | | | | | M	src/libshogun/features/PolyFeatures.h
| | | | | |         
* | | | | |   commit 4b3721d5952417897ede15223d95846a4a3a16ec
|\ \ \ \ \ \  Merge: 549dde2 5ad49b9
| | | | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | | | Date:   Mon Apr 11 11:57:56 2011 +0200
| | | | | | | 
| | | | | | |     Merge branch 'master' of https://github.com/karlnapf/shogun
| | | | | | |        
| * | | | | | commit 5ad49b9700be3552cfe552467bd1a9fa80d97a9c
| | |/ / / /  Author: Heiko Strathmann <heiko.strathmann@gmail.com>
| |/| | | |   Date:   Sun Apr 10 20:33:05 2011 +0200
| | | | | |   
| | | | | |       implemented serialization support for this class
| | | | | |   
| | | | | |   M	src/libshogun/features/PolyFeatures.cpp
| | | | | |   M	src/libshogun/features/PolyFeatures.h
| | | | | |         
* | | | | |   commit 549dde2a12179e83e0789d0217dd05fdab40b26f
|\ \ \ \ \ \  Merge: 9985a76 22614ce
| | |/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| |/| | | |   Date:   Mon Apr 11 11:52:46 2011 +0200
| | | | | |   
| | | | | |       Merge branch 'master' of https://github.com/sploving/shogun
| | | | | |       
| * | | | | commit 22614ce5e752774a1504c886c01e4f7712772e2a
| | |_|/ /  Author: Baozeng Ding <sploving1@gmail.com>
| |/| | |   Date:   Mon Apr 11 17:15:05 2011 +0800
| | | | |   
| | | | |       lua vector support
| | | | |   
| | | | |   M	src/lua_modular/swig_typemaps.i
| | | | |      
* | | | | commit 9985a76a5e4d56afc114d0265a775c15f7674fd3
|/ / / /  Author: Soeren Sonnenburg <sonne@debian.org>
| | | |   Date:   Mon Apr 11 11:50:41 2011 +0200
| | | |   
| | | |       Add csharp support (for mono)
| | | |   
| | | |   M	src/configure
| | | |   A	src/csharp_modular/sg_print_functions.cpp
| | | |   A	src/csharp_modular/swig_typemaps.i
| | | |   M	src/modular/SGBase.i
| | | |     
* | | | commit 412d64388c7e9aeb41ba1b6d4d742fbd98c4c745
| | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | Date:   Mon Apr 11 10:20:01 2011 +0200
| | | | 
| | | |     whitespace fix
| | | | 
| | | | M	src/libshogun/kernel/DotKernel.h
| | | |       
* | | |   commit 9c534b9613f4d05c46a6460d4e749c2385262bbf
|\ \ \ \  Merge: 572e89f 33c7e58
| | |_|/  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| |/| |   Date:   Mon Apr 11 09:50:17 2011 +0530
| | | |   
| | | |       Merge commit 'upstream/master'
| | | |       
| * | |   commit 33c7e586723082a65ce647fda47fc9ebeb8c8074
| |\ \ \  Merge: e4560dc 01a33a7
| | | |/  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | |/|   Date:   Sun Apr 10 23:26:25 2011 +0200
| | | |   
| | | |       Merge remote-tracking branch 'upstream/master'
| | | |       
| | | |       Conflicts:
| | | |       	src/libshogun/kernel/Kernel.cpp
| | | |       	src/libshogun/kernel/Kernel.h
| | | |     
| | * | commit 01a33a7338cbd3ece6148940288954b89f28744d
| | | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | | Date:   Mon Apr 11 02:32:20 2011 +0530
| | | | 
| | | |     Add doc for parameter in SphericalKernel
| | | | 
| | | | M	src/libshogun/kernel/SphericalKernel.h
| | | |       
| | * |   commit 05a1d7de151b137d144e045ced9e4564d7ee27b8
| | |\ \  Merge: 572762e 3a2e2f6
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Apr 10 22:12:49 2011 +0200
| | | | | 
| | | | |     Merge branch 'master' of https://github.com/diver-in-sky/shogun
| | | | |     
| | | | |     Fix merge conflicts in (stemming from changed kernel enums)
| | | | |     	src/libshogun/kernel/Kernel.cpp
| | | | |     	src/libshogun/kernel/Kernel.h
| | | | |      
| | | * | commit 3a2e2f6493195e5f93448dd9d66df50e493c20b2
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 21:14:59 2011 +0400
| | | | | 
| | | | |     test anova kernel dynamic programming implementations - same result on test data
| | | | | 
| | | | | M	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | |        
| | | * |   commit 14f32c560834554e4f80c7510594b0251f7c9eed
| | | |\ \  Merge: 0471c24 e49b406
| | | | |/  Author: Andrew <tereskin@gmail.com>
| | | | |   Date:   Sun Apr 10 15:41:56 2011 +0400
| | | | |   
| | | | |       Merge remote branch 'upstream/master'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |      
| | | * | commit 0471c24c733301e7321d6cc726e3520782e99626
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 15:35:40 2011 +0400
| | | | | 
| | | | |     python_modular example for ANOVA kernel added
| | | | | 
| | | | | A	examples/undocumented/python_modular/kernel_anova_modular.py
| | | | | M	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | M	src/libshogun/kernel/ANOVAKernel.h
| | | | |      
| | | * | commit 39b97d99178dfc08b94144922c2b271a607926a0
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 04:07:25 2011 +0400
| | | | | 
| | | | |     introductd ANOVA kernel with 2 recursive calculation algorithms
| | | | | 
| | | | | A	src/libshogun/kernel/ANOVAKernel.cpp
| | | | | A	src/libshogun/kernel/ANOVAKernel.h
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| | | * | commit eac9bbdff3d49a8510f5e385018f5204ceb66e5d
| | | | | Author: Andrew <tereskin@gmail.com>
| | | | | Date:   Sun Apr 10 02:33:22 2011 +0400
| | | | | 
| | | | |     serialization of distance in TStudentKernel
| | | | | 
| | | | | M	src/libshogun/kernel/TStudentKernel.cpp
| | | | |      
| | * | | commit 572762e679e22553fae6003fdafcab045a69d524
| | | | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | | | Date:   Sun Apr 10 22:03:31 2011 +0200
| | | | | 
| | | | |     fix the latex code in some of the newer kernel documentation
| | | | |     
| | | | |     ams math is not avilable, so commands like text, lVert etc won't work
| | | | | 
| | | | | M	src/libshogun/kernel/HistogramIntersectionKernel.h
| | | | | M	src/libshogun/kernel/SphericalKernel.h
| | | | | M	src/libshogun/kernel/SplineKernel.h
| | | | |        
| | * | |   commit e8cd2827cfe080ccc08d155380c840c14869d11c
| | |\ \ \  Merge: e49b406 6a2967b
| | | |_|/  Author: Soeren Sonnenburg <sonne@debian.org>
| | |/| |   Date:   Sun Apr 10 21:49:18 2011 +0200
| | | | |   
| | | | |       Merge branch 'master' of https://github.com/sbos/shogun
| | | | |       
| | | | |       Resolve conflicts in:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |       	src/modular/Kernel.i
| | | | |      
| | | * | commit 6a2967b0287ada2f1b47fa3c6d77018345131677
| | | | | Author: Sergey Bartunov <sbos.net@gmail.com>
| | | | | Date:   Sun Apr 10 11:52:44 2011 +0400
| | | | | 
| | | | |     SplineKernel added
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | A	src/libshogun/kernel/SplineKernel.cpp
| | | | | A	src/libshogun/kernel/SplineKernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit e4560dcd114f761237df3c2a1330e12ffb01e703
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 12:35:46 2011 +0200
| | | | | 
| | | | |     New kernel: log kernel
| | | | | 
| | | | | M	src/libshogun/kernel/Kernel.cpp
| | | | | M	src/libshogun/kernel/Kernel.h
| | | | | A	src/libshogun/kernel/LogKernel.cpp
| | | | | A	src/libshogun/kernel/LogKernel.h
| | | | | M	src/modular/Kernel.i
| | | | |      
| * | | | commit 8ed0784168de73384222b92bb60abb52426a445b
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 10:23:42 2011 +0200
| | | | | 
| | | | |     Serialization fix 2 -- .h file
| | | | | 
| | | | | M	src/libshogun/kernel/PowerKernel.h
| | | | |      
| * | | | commit d341cc265d439e1dcaac3af2477e843f94656826
| | | | | Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | | Date:   Sun Apr 10 10:22:46 2011 +0200
| | | | | 
| | | | |     Serialization fix.
| | | | | 
| | | | | M	src/libshogun/kernel/PowerKernel.cpp
| | | | |        
| * | | |   commit 9cafd17dea18c4b740afdc4e26f2a790271a8f76
| |\ \ \ \  Merge: e45892c e49b406
| | |/ / /  Author: Jakub Jirku <jakub.jirku@gmail.com>
| | | | |   Date:   Sun Apr 10 10:16:59 2011 +0200
| | | | |   
| | | | |       Merge remote-tracking branch 'upstream/master'
| | | | |       
| | | | |       Conflicts:
| | | | |       	src/libshogun/kernel/Kernel.cpp
| | | | |       	src/libshogun/kernel/Kernel.h
| | | | |      
| * | | | commit e45892c65f3754b04e539aecba00e4e30d66269e
| | |_|/  Author: Jakub Jirku <jakub.jirku@gmail.com>
| |/| |   Date:   Sun Apr 10 00:04:05 2011 +0200
| | | |   
| | | |       New kernel: power (aka unrectified triangular)
| | | |   
| | | |   M	src/libshogun/kernel/Kernel.cpp
| | | |   M	src/libshogun/kernel/Kernel.h
| | | |   A	src/libshogun/kernel/PowerKernel.cpp
| | | |   A	src/libshogun/kernel/PowerKernel.h
| | | |   M	src/modular/Kernel.i
| | | |     
* | | | commit 572e89f907d5aab4b20ec1294dd8875d10c93a90
| | | | Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| | | | Date:   Sun Apr 10 15:02:48 2011 +0530
| | | | 
| | | |     Removed spaces
| | | | 
| | | | M	src/libshogun/kernel/WaveletKernel.h
| | | |     
* | | | commit ef11aa373768ed8e45a8a88cbafeb597dec80836
| |/ /  Author: Siddharth Kherada <siddharthkherada27@gmail.com>
|/| |   Date:   Sun Apr 10 12:22:42 2011 +0530
| | |   
| | |       Updated GPL header
| | |   
| | |   M	src/libshogun/kernel/WaveletKernel.cpp
| | |   M	src/libshogun/kernel/WaveletKernel.h
| | |    
* | | commit e49b40605aa78998dbcd78c392fce4ebac2f3f54
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 05:05:05 2011 +0530
| | | 
| | |     Fixed get_name in SphericalKernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 54a25811f91b3ebd094d3e58506e67acd9ec8481
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:48:45 2011 +0530
| | | 
| | |     Modify copyrights in sphericalkernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 662d190d54788ce0c7b66945e478655d24768538
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:46:27 2011 +0530
| | | 
| | |     Add K_SPHERICAL to kernel files
| | | 
| | | M	src/libshogun/kernel/Kernel.cpp
| | | M	src/modular/Kernel.i
| | |    
* | | commit dd967ce16ece3123fc04c70c05b02f16860c56eb
| | | Author: Shashwat Lal Das <fraggerx@gmail.com>
| | | Date:   Sun Apr 10 04:33:05 2011 +0530
| | | 
| | |     Fixed constructor in spherical kernel
| | | 
| | | M	src/libshogun/kernel/SphericalKernel.cpp
| | | M	src/libshogun/kernel/SphericalKernel.h
| | |    
* | | commit 7a3ed87563a325489530d87719887a5acfb004e7
|/ /  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Apr 10 04:06:16 2011 +0530
| |   
| |       Added spherical kernel.
| |   
| |   M	src/libshogun/kernel/Kernel.h
| |   A	src/libshogun/kernel/SphericalKernel.cpp
| |   A	src/libshogun/kernel/SphericalKernel.h
| |   M	src/modular/Kernel.i
| |     
* |   commit 461e05db2be4f980aaec58e430ec8f6445ba9cfb
|\ \  Merge: a1b95d5 6151a41
| | | Author: Soeren Sonnenburg <sonne@debian.org>
| | | Date:   Sat Apr 9 23:44:41 2011 +0200
| | | 
| | |     Merge branch 'master' of https://github.com/frx/shogun
| | |    
| * | commit 6151a419b02c37c3ce206ce33f2bdb4bc5560b1b
| |/  Author: Shashwat Lal Das <fraggerx@gmail.com>
| |   Date:   Sun Apr 10 02:53:57 2011 +0530
| |   
| |       Added width as m_parameter in DistanceKernel
| |   
| |   M	src/libshogun/kernel/DistanceKernel.cpp
| |   M	src/libshogun/kernel/DistanceKernel.h
| |   
* | commit a1b95d5b076d6a7bc1ffe97b6a7723b56e6fe0f2
| | Author: Marcin Copik <mcopik@gmail.com>
| | Date:   Sat Apr 9 22:49:47 2011 +0200
| | 
| |     Added implementation of functions for I/O of bool matrices and string lists
| | 
| | M	src/libshogun/lib/File.cpp
| |   
* | commit 15b28f13df33fa6e21000fbac20cdacb107db77b
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Sat Apr 9 23:39:53 2011 +0200
|   
|       get_name needs to return the class name (withough C prefix)
|       
|       This patch goes through all *.h files changing get_name to return the
|       class name of the of the class withouth the C prefix. Since Array*.h
|       contained functions to set the array name, the array set_name and
|       get_name functions have been renamed to set_array_name / get_array_name
|       to fix the naming clash.
|   
|   M	src/libshogun/base/DynArray.h
|   M	src/libshogun/classifier/svm/gpdtsolve.h
|   M	src/libshogun/distance/MinkowskiMetric.h
|   M	src/libshogun/kernel/AUCKernel.h
|   M	src/libshogun/kernel/CauchyKernel.h
|   M	src/libshogun/kernel/Chi2Kernel.h
|   M	src/libshogun/kernel/CommUlongStringKernel.h
|   M	src/libshogun/kernel/CommWordStringKernel.h
|   M	src/libshogun/kernel/ConstKernel.h
|   M	src/libshogun/kernel/DistanceKernel.h
|   M	src/libshogun/kernel/FixedDegreeStringKernel.h
|   M	src/libshogun/kernel/GaussianMatchStringKernel.h
|   M	src/libshogun/kernel/GaussianShiftKernel.h
|   M	src/libshogun/kernel/GaussianShortRealKernel.h
|   M	src/libshogun/kernel/HistogramIntersectionKernel.h
|   M	src/libshogun/kernel/HistogramWordStringKernel.h
|   M	src/libshogun/kernel/Kernel.cpp
|   M	src/libshogun/kernel/Kernel.h
|   M	src/libshogun/kernel/LinearKernel.h
|   M	src/libshogun/kernel/LinearStringKernel.h
|   M	src/libshogun/kernel/LocalAlignmentStringKernel.h
|   M	src/libshogun/kernel/LocalityImprovedStringKernel.h
|   M	src/libshogun/kernel/MatchWordStringKernel.h
|   M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
|   M	src/libshogun/kernel/PolyMatchStringKernel.h
|   M	src/libshogun/kernel/PolyMatchWordStringKernel.h
|   M	src/libshogun/kernel/SalzbergWordStringKernel.h
|   M	src/libshogun/kernel/SigmoidKernel.h
|   M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
|   M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
|   M	src/libshogun/kernel/SpectrumRBFKernel.h
|   M	src/libshogun/kernel/TStudentKernel.h
|   M	src/libshogun/kernel/TensorProductPairKernel.h
|   M	src/libshogun/kernel/WaveKernel.h
|   M	src/libshogun/kernel/WaveletKernel.h
|   M	src/libshogun/kernel/WeightedCommWordStringKernel.h
|   M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
|   M	src/libshogun/lib/Array.h
|   M	src/libshogun/lib/Array2.h
|   M	src/libshogun/lib/Array3.h
|   M	src/libshogun/regression/svr/LibSVR.h
|   M	src/libshogun/structure/DynProg.cpp
|    
*   commit 6c3339d8638d1b1184164c283e9a07e9f524e118
|\  Merge: edb5c2c 02dab1c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat Apr 9 22:01:05 2011 +0200
| | 
| |     Merge branch 'master' of https://github.com/SergeyLisitsyn/shogun into SergeyLisitsyn-master
| |   
| * commit 02dab1c3930c9898a214ef549b461344d23773f0
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:56:09 2011 +0400
| | 
| |     Changed initialization order to avoid warnings.
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
| * commit a9264fbf248f0d31b8a136509b1db11e3808a270
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:47:40 2011 +0400
| | 
| |     Removed _ from k_. (Commit the Great)
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
| * commit de4b2cc34efd8a4a5cfaa1983d7a4a6539919725
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 23:41:38 2011 +0400
| | 
| |     Fixed some naming
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
| * commit c71f175853bd8f881edb02984b37c29435445f6b
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 21:13:07 2011 +0400
| | 
| |     Made distance serializable in WaveKernel
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| |   
| * commit 1d2927c0e7594fdf03797af856431402434a99dc
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 21:12:31 2011 +0400
| | 
| |     Made distance serializable in CauchyKernel
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| |   
| * commit d9956db0abf9ae1102cd5631d76f56edf9c4417e
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:47:46 2011 +0400
| | 
| |     Generalized classifying in CKNN with weighting, fixed copyright
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
| * commit e3d69270b6b45b2e7022b7494005132c9cd4d9b8
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:17:02 2011 +0400
| | 
| |     Added initialization in all constructors of WaveKernel
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| |   
| * commit 02a46e42024d30a2e6e253f81174ad2e846cac66
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 20:16:39 2011 +0400
| | 
| |     Added initialization in all constructors of CauchyKernel
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| |   
| * commit ac0f7c72085a839bf3b8bb670880adaa5e71fa01
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:45:53 2011 +0400
| | 
| |     Made proper initialization, fixed copyright
| | 
| | M	src/libshogun/kernel/WaveKernel.cpp
| | M	src/libshogun/kernel/WaveKernel.h
| |   
| * commit 7e65c81659da1789bd0d40ad659808cf94b692dd
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:44:59 2011 +0400
| | 
| |     Made proper initialization, fixed copyright
| | 
| | M	src/libshogun/kernel/CauchyKernel.cpp
| | M	src/libshogun/kernel/CauchyKernel.h
| |   
| * commit 226cc1ec125fc16f0b7a4cb83b6edf8f0688bfad
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Sat Apr 9 19:10:43 2011 +0400
| | 
| |     Made CKNN capable of weighted classifying.
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
* | commit edb5c2cef547cf6b49c3afe9c5f9282befdc23db
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sat Apr 9 13:44:46 2011 -0400
| | 
| |     Fixing serializattion stuff in ExponentialKernel (and learning git the hard way :P )
| | 
| | M	src/libshogun/kernel/ExponentialKernel.cpp
| |     
* |   commit e5ad08d8f70750cbb964e4c76cb980b63aaa0f63
|\ \  Merge: 039e23a d35eae9
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sat Apr 9 13:42:55 2011 -0400
| | | 
| | |     Merge branch 'master' of github.com:serialhex/shogun
| | |      
| * |   commit d35eae9c2d0cf8d0e70fef2f5a52a96082dbea60
| |\ \  Merge: 24d8622 c7cb655
| | | | Author: Justin Patera <serialhex@gmail.com>
| | | | Date:   Sat Apr 9 13:39:57 2011 -0400
| | | | 
| | | |     Merge branch 'master' of github.com:serialhex/shogun
| | | |       
* | | |   commit 039e23afd81c6d53d8467b871a13fe3be13af00c
|\ \ \ \  Merge: 24d8622 c7cb655
| |/ / /  Author: Justin Patera <serialhex@gmail.com>
|/| / /   Date:   Sat Apr 9 13:39:57 2011 -0400
| |/ /    
| | |         Fixing serialization stuff...
| | |    
| * | commit c7cb65534a969b1a1c561012bdbf05890a563a0d
| | | Author: Justin Patera <serialhex@gmail.com>
| | | Date:   Sat Apr 9 13:16:15 2011 -0400
| | | 
| | |     Added Distance serialization to ExponentialKernel
| | | 
| | | M	src/libshogun/kernel/ExponentialKernel.cpp
| | |    
* | | commit 24d86225d31f46ee3959725acc9dfea0e9588f3b
|/ /  Author: Justin Patera <serialhex@gmail.com>
| |   Date:   Sat Apr 9 13:16:15 2011 -0400
| |   
| |       Added Distance serialization to ExponentialKernel
| |   
| |   M	src/libshogun/kernel/ExponentialKernel.cpp
| |   
* | commit ff346ba8f8fccfc55f403ee528c7095116ec7591
| | Author: Justin Patera <serialhex@gmail.com>
| | Date:   Sat Apr 9 12:36:49 2011 -0400
| | 
| |     Added ExponentialKernel to the various Kernel.* files so it may be used
| | 
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/kernel/Kernel.h
| | M	src/modular/Kernel.i
| |   
* | commit de8b0ada71057102c4aa66ba64044cc6f13915d1
|/  Author: Justin Patera <serialhex@gmail.com>
|   Date:   Sat Apr 9 12:31:55 2011 -0400
|   
|       Added ExponentialKernel to list of available kernels
|   
|   A	src/libshogun/kernel/ExponentialKernel.cpp
|   A	src/libshogun/kernel/ExponentialKernel.h
|  
* commit 385ae970dfb80caaa0707095a68b21a0ab5cd090
| Author: asia <asia@asia.(none)>
| Date:   Sat Apr 9 14:53:36 2011 +0200
| 
|     Introduced new kernel: Multiquadric Kernel
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit c70c755f850d2b5804838800655a5db97e764ccd
| Author: Rafał Surowiecki <rafal@surowiecki.pl>
| Date:   Sat Apr 9 13:12:09 2011 +0200
| 
|     Introduced new kernel: Rational Quadratic Kernel
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit bf1f8a1837d1a1ce34ebe03f958289dbdff5b9b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 15:15:39 2011 +0200
| 
|     remove trailing whitespaces from Chris' patch
| 
| M	applications/arts/arts.py
| M	applications/arts/genomic.py
| M	applications/arts/signal_sensor.py
| M	applications/arts/util.py
|  
* commit e9df7384788a5717e3e8f41e99aa66ebc249be53
| Author: cwidmer <cwidmer@tue.mpg.de>
| Date:   Sat Apr 9 14:58:04 2011 +0200
| 
|     added chunking procedure that splits contigs into smaller pieces and thus reduces the memory foot-print. Additional refactoring and reformatting in order to respect PEP8.
| 
| D	applications/arts/arts
| A	applications/arts/arts.py
| M	applications/arts/genomic.py
| M	applications/arts/signal_sensor.py
| M	applications/arts/util.py
|  
* commit 034b37ca7ff4ee2c2ad56d6c36616ebcfe4b4596
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 15:11:46 2011 +0200
| 
|     remove trailing whitespaces and minor formatting changes
| 
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/TStudentKernel.cpp
| M	src/libshogun/kernel/TStudentKernel.h
|  
* commit 7a0e639afad3745e993c9d635362e3843475f255
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:39:27 2011 +0400
| 
|     typo in kernel description
| 
| M	src/libshogun/kernel/TStudentKernel.h
|  
* commit ae0d00f7c13244bdb5f58e850e090562309bf4ef
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:30:49 2011 +0400
| 
|     add T-Student kernel in Kernel.h and in modular
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/modular/Kernel.i
|  
* commit e041cf940cf2206f699612dc51566a7f38450adb
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:28:42 2011 +0400
| 
|     add Generalized T-Student Kernel
| 
| A	src/libshogun/kernel/TStudentKernel.cpp
| A	src/libshogun/kernel/TStudentKernel.h
|  
* commit ed33ad8110c139f7895ec750fd8349c409f35e4c
| Author: Andrew <tereskin@gmail.com>
| Date:   Sat Apr 9 13:20:10 2011 +0400
| 
|     fix name of kernel in description
| 
| M	src/libshogun/kernel/CauchyKernel.h
|  
* commit 4fed492402928739be90d6f4a315dd7b0dd5e787
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 9 03:28:26 2011 +0400
| 
|     Introduced new kernel: CauchyKernel, corrected misprint at WaveKernel description
| 
| A	src/libshogun/kernel/CauchyKernel.cpp
| A	src/libshogun/kernel/CauchyKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WaveKernel.h
| M	src/modular/Kernel.i
|  
* commit 33d7b29e494cab24399adf640c427b1aba79af7b
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Fri Apr 8 22:01:51 2011 +0400
| 
|     Made HistogramIntersectionKernel generalized with introducing parameter beta
| 
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
|  
* commit 9d96f57734af2a2b8429a082a3467f1a55c9161f
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Sat Apr 9 02:30:05 2011 +0400
| 
|     Introduced new kernel: WaveKernel
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/WaveKernel.cpp
| A	src/libshogun/kernel/WaveKernel.h
| M	src/modular/Kernel.i
|  
* commit d7503c3841615ac28a6545e28508ff6ba9719206
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 00:13:42 2011 +0200
| 
|     remove also includes of boosting algos for now.
| 
| M	src/modular/Classifier.i
|  
* commit 9bb3b2eb87b79547c2fc7ea20039dc9257dd6987
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 9 00:00:57 2011 +0200
| 
|     remove boosting directory
|     
|     If we merge again we have to merge with newer
|     multiboost algorithms anyway. The current ones show many warnings and
|     cause errors when generating the documentation.
| 
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| D	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| D	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| D	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| D	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| D	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| D	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.cpp
| D	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| D	src/libshogun/classifier/boosting/Bandits/Random.cpp
| D	src/libshogun/classifier/boosting/Bandits/Random.h
| D	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBK.h
| D	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| D	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| D	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| D	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| D	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| D	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| D	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.cpp
| D	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.h
| D	src/libshogun/classifier/boosting/Bzip2/blocksort.c
| D	src/libshogun/classifier/boosting/Bzip2/bzip2.c
| D	src/libshogun/classifier/boosting/Bzip2/bzip2recover.c
| D	src/libshogun/classifier/boosting/Bzip2/bzlib.c
| D	src/libshogun/classifier/boosting/Bzip2/bzlib.h
| D	src/libshogun/classifier/boosting/Bzip2/bzlib_private.h
| D	src/libshogun/classifier/boosting/Bzip2/compress.c
| D	src/libshogun/classifier/boosting/Bzip2/crctable.c
| D	src/libshogun/classifier/boosting/Bzip2/decompress.c
| D	src/libshogun/classifier/boosting/Bzip2/dlltest.c
| D	src/libshogun/classifier/boosting/Bzip2/huffman.c
| D	src/libshogun/classifier/boosting/Bzip2/mk251.c
| D	src/libshogun/classifier/boosting/Bzip2/randtable.c
| D	src/libshogun/classifier/boosting/Bzip2/spewG.c
| D	src/libshogun/classifier/boosting/Bzip2/unzcrash.c
| D	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| D	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| D	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| D	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| D	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| D	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| D	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| D	src/libshogun/classifier/boosting/Defaults.h
| D	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| D	src/libshogun/classifier/boosting/IO/ADTreeData.h
| D	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| D	src/libshogun/classifier/boosting/IO/ArffParser.h
| D	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| D	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| D	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| D	src/libshogun/classifier/boosting/IO/EncodeData.h
| D	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| D	src/libshogun/classifier/boosting/IO/ExtendableData.h
| D	src/libshogun/classifier/boosting/IO/GenericParser.h
| D	src/libshogun/classifier/boosting/IO/HaarData.cpp
| D	src/libshogun/classifier/boosting/IO/HaarData.h
| D	src/libshogun/classifier/boosting/IO/InputData.cpp
| D	src/libshogun/classifier/boosting/IO/InputData.h
| D	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| D	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| D	src/libshogun/classifier/boosting/IO/NameMap.cpp
| D	src/libshogun/classifier/boosting/IO/NameMap.h
| D	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| D	src/libshogun/classifier/boosting/IO/OutputInfo.h
| D	src/libshogun/classifier/boosting/IO/ParasiteData.h
| D	src/libshogun/classifier/boosting/IO/RawData.cpp
| D	src/libshogun/classifier/boosting/IO/RawData.h
| D	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| D	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| D	src/libshogun/classifier/boosting/IO/Serialization.cpp
| D	src/libshogun/classifier/boosting/IO/Serialization.h
| D	src/libshogun/classifier/boosting/IO/SortedData.cpp
| D	src/libshogun/classifier/boosting/IO/SortedData.h
| D	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| D	src/libshogun/classifier/boosting/IO/TxtParser.h
| D	src/libshogun/classifier/boosting/Kmeans/KCtree.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| D	src/libshogun/classifier/boosting/Kmeans/KCutil.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| D	src/libshogun/classifier/boosting/Kmeans/KM_ANN.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KM_ANN.h
| D	src/libshogun/classifier/boosting/Kmeans/KMcenters.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| D	src/libshogun/classifier/boosting/Kmeans/KMdata.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| D	src/libshogun/classifier/boosting/Kmeans/KMeans.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| D	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| D	src/libshogun/classifier/boosting/Kmeans/KMlocal.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| D	src/libshogun/classifier/boosting/Kmeans/KMrand.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| D	src/libshogun/classifier/boosting/Kmeans/KMterm.cpp
| D	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| D	src/libshogun/classifier/boosting/Kmeans/files
| D	src/libshogun/classifier/boosting/Others/Example.h
| D	src/libshogun/classifier/boosting/Others/Rates.h
| D	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| D	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| D	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| D	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| D	src/libshogun/classifier/boosting/Utils/Args.cpp
| D	src/libshogun/classifier/boosting/Utils/Args.h
| D	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| D	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| D	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| D	src/libshogun/classifier/boosting/Utils/MathematicalTools.h
| D	src/libshogun/classifier/boosting/Utils/StreamTokenizer.h
| D	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| D	src/libshogun/classifier/boosting/Utils/UCTutils.h
| D	src/libshogun/classifier/boosting/Utils/Utils.cpp
| D	src/libshogun/classifier/boosting/Utils/Utils.h
| D	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| D	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| D	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| D	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| D	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| D	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
|  
* commit 07233206da8400a20b0547b46792b2826995bb9c
| Author: Ziyuan Lin <ziyuang@gmail.com>
| Date:   Sat Apr 9 00:51:43 2011 +0800
| 
|     Correct a subscript error
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit d52c6de71fed6ebbde8cb69ec5641be4228456d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 8 18:09:21 2011 +0200
| 
|     Add modular interface to Wavelet Kernel
| 
| M	src/modular/Kernel.i
|  
* commit 4ae3a56a12353874ea625107444bcd144db77ffa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 8 18:08:55 2011 +0200
| 
|     Minor reformatting, inlining and whitespace changes
| 
| M	src/libshogun/kernel/WaveletKernel.cpp
| M	src/libshogun/kernel/WaveletKernel.h
|  
* commit 9f7760cec52c28f0d35037dc056c52f718ac0ea9
| Author: Siddharth Kherada <siddharthkherada27@gmail.com>
| Date:   Fri Apr 8 21:20:09 2011 +0530
| 
|     Wavelet Kernel Function
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/WaveletKernel.cpp
| A	src/libshogun/kernel/WaveletKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 88ee55bd1aa30f07eba9e583c75673a6b022c013
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 7 22:24:14 2011 +0200
| 
|     Minor formatting changes
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
|  
* commit 32186a0bd10d6965e6f876f5106312d66888ec9c
| Author: Sergey Lisitsyn <blackburn91@gmail.com>
| Date:   Thu Apr 7 02:30:42 2011 +0400
| 
|     Introduced protected method init_distance(CFeatures* data) for avoiding further code duplication
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
|  
* commit e437a5f9d73f7ee753399af2115bb6e5b1f3d217
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 21:23:22 2011 +0200
| 
|     replace H5Gopen/create also with the *2 functions
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 827a449c752abfd08d7794eb8b47f7c8e0cfe560
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 18:22:08 2011 +0200
| 
|     Fix type issues - thanks Lin Ziyuan for the report.
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit c0c5990ef991877c748191ae09d3859fa5b6f3da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 18:13:17 2011 +0200
| 
|     drop using hdf5 1.6 based functions
|     
|     Now use *2 functions like H5Dopen2 etc
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 4a002022b44bc4c1fc388eb4129ac77889cbf3a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 14:02:25 2011 +0200
| 
|     ignore the cmdline binary
| 
| M	.gitignore
|  
* commit ce7a0f67a6aae86dd5869449f0bdf463624f42d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 6 14:00:48 2011 +0200
| 
|     add a function to set rbf kernel width
|     
|     such that it can now be set not only when constructing the object
| 
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
|    
*   commit a8891a027610bb6a040355d09da83672f02aebb7
|\  Merge: 6213351 d7dab5c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 10:02:15 2011 +0200
| | 
| |     Merge branch 'master' of github.com:shogun-toolbox/shogun
| |   
| * commit d7dab5c27fb505a59a1570ec4cb7ca06f76b79ed
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 07:20:40 2011 +0200
| | 
| |     make configure executable
| | 
| | M	src/configure
| |   
| * commit 159bbb4e3ca4da76859b7d9c043b3bcad7b24a14
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 07:18:41 2011 +0200
| | 
| |     remove *.pyc - occurred twice
| | 
| | M	.gitignore
| |   
| * commit ea1505cddf1df009ce57cb92146249687cab2899
| | Author: Ameer Ayoub <ameer.ayoub@gmail.com>
| | Date:   Tue Apr 5 21:03:16 2011 -0700
| | 
| |     Fixed test_ruby(), previously would error if ruby was installed but not ruby-dev.
| | 
| | M	src/configure
| |   
* | commit 6213351cf259aab11ae6e62ef60fdee2eff1cb79
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Apr 6 10:00:39 2011 +0200
| | 
| |     make classify_NN protected; improve coding style
| |     
| |     (...by introducing a few spaces, brackets)
| | 
| | M	src/libshogun/classifier/KNN.cpp
| | M	src/libshogun/classifier/KNN.h
| |   
* | commit 729a29e1730f003c7d5758e299ec317dea0d5e80
| | Author: Sergey Lisitsyn <blackburn91@gmail.com>
| | Date:   Mon Apr 4 13:58:25 2011 +0400
| | 
| |     Added redirection to classify_NN(CFeatures* data) in general classify(CFeatures* data) in case of k==1
| | 
| | M	src/libshogun/classifier/KNN.cpp
| |   
* | commit 3d8ccac14e992dffaed4bf97360b489572185d46
|/  Author: Sergey Lisitsyn <blackburn91@gmail.com>
|   Date:   Mon Apr 4 01:11:11 2011 +0400
|   
|       Introduced new method classify_NN() for fast classification in case of k=1
|   
|   M	src/libshogun/classifier/KNN.cpp
|   M	src/libshogun/classifier/KNN.h
|  
* commit c26d04a061c9ef15143e579ead3482f542fea2e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 15:47:02 2011 +0200
| 
|     Revert "add -follow option to find"
|     
|     This reverts commit 54f4f735cf9956899de750b8fd9aeeb8bf0afd03 (was
|     		causing infinity loops upon find)
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 54f4f735cf9956899de750b8fd9aeeb8bf0afd03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 14:06:18 2011 +0200
| 
|     add -follow option to find
|     
|     This enable symlinked sub-modules.
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit b3d0c445a5ad78d5c0d5e32030e48b1c9b5c0748
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 13:50:38 2011 +0200
| 
|     define #shogun
|     
|     This way potential submodules know that they are
|     compiled within shogun.
| 
| M	src/configure
|  
* commit 4276e9b7284dcb6f308e7651da7597140e7de7ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 4 12:14:40 2011 +0200
| 
|     Improve lua detection
|     
|     lua-config is only available on debian systems
|     (and already obsoleted). We therefore attempt to use lua config and if
|     that fails fall back to a simply -llua<ver> etc.
| 
| M	src/configure
|  
* commit 56b366cf80e28ace82c4197059bb49d1fab15a23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 3 12:48:02 2011 +0200
| 
|     improve gitignore to exclude doxy files etc
| 
| M	.gitignore
|  
* commit 085319f959aa848771401a6d9de53233928ffef1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 3 12:41:18 2011 +0200
| 
|     Add dummy make install targets for java, lua and ruby
| 
| M	src/Makefile.template
|  
* commit b0614d454739ec38acfb3c3c543fa03388c92705
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 23:33:01 2011 +0200
| 
|     improve gitignore for modular interfaces
| 
| M	.gitignore
|  
* commit 4bd3981055c5e5990f8f44f9b03b8dd9249479cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 17:40:42 2011 +0200
| 
|     Don't call the return value result as this clashes with swig's R
|     wrapping (calling return SEXPptr's result).
| 
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
|  
* commit 9842cfec0093a79306b2ebde4451d2a981ab589a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 17:39:21 2011 +0200
| 
|     Ignore a few more sg_* functions in modular interfaces.
|     
|     This fixes a r_modular build failure.
| 
| M	src/modular/SGBase.i
|  
* commit 0d5bae1911dda08ba44d95e671bdfa17cf287f13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 2 14:19:46 2011 +0200
| 
|     Adjust version script to fix build failure on OSX
| 
| M	src/.version.sh
|  
* commit cbef0fb53da4466c65a47f34907e6fbc549cffaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 30 23:03:51 2011 +0200
| 
|     Implement snappy compression support (http://code.google.com/p/snappy/).
|     
|     This code is still experimental and pending benchmarks.
| 
| M	src/configure
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
|  
* commit ad96ba33a03579457e1a9af31fd6106a3437d9e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 30 11:13:01 2011 +0200
| 
|     remove d.l.s email address from changelog
| 
| D	src/.authors
| M	src/ChangeLog
|  
* commit bbf6afa29ea2cdbac8d5eb9880fe61e30d6af384
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:28:46 2011 +0200
| 
|     add flags to support lua,ruby and java via
|     
|     ./configure --interfaces=libshogun,ruby_modular,lua_modular,java_modular
|     
|     basic autodetection should work for java and ruby paths. Autodetection
|     for lua should be perfect.
| 
| M	src/configure
|  
* commit d49afe0f7e13eacd7b26106ea0d79bee531ba69b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:27:37 2011 +0200
| 
|     update modular interface files to discard SWIG_fail for java and doxygen includes for ruby
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| M	src/modular/SGBase.i
| M	src/modular/Structure.i
|  
* commit 3287f9b9f22fa5665fc37fbdd45dc16983bfa61a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:27:06 2011 +0200
| 
|     update gitignore to exclude looking for ui symlink
| 
| M	.gitignore
|  
* commit f6592019fcaf066ac240f1b92cba7eac4f22004b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:36 2011 +0200
| 
|     add dummy typemaps for ruby
| 
| A	src/ruby_modular/sg_print_functions.cpp
| A	src/ruby_modular/swig_typemaps.i
|  
* commit 203a7357de01dba760360e83e62754c6341a671c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:25 2011 +0200
| 
|     add dummy typemaps for lua
| 
| A	src/lua_modular/sg_print_functions.cpp
| A	src/lua_modular/swig_typemaps.i
|  
* commit b6a1d22d64ff0e1df48368e97e92e199af3f2c34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 29 16:26:03 2011 +0200
| 
|     add dummy typemaps for java
| 
| A	src/java_modular/sg_print_functions.cpp
| A	src/java_modular/swig_typemaps.i
|  
* commit 36a72f5979dd81b9bcc4cec29fc40a284160844b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 22:33:54 2011 +0200
| 
|     polish gitignore
| 
| M	.gitignore
|  
* commit 0d4ae22c3d808e569c3876d487ec8357293195ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 15:30:49 2011 +0200
| 
|     Applying patch from D.   Lehmann upon his request on the shogun mailing list:
|     
|     ======= begin email full text quote ======
|     From: 	D.   Lehmann <.......................>
|     To: 	Sören Sonnenburg <Soeren.Sonnenburg@tu-berlin.de>, 'Klaus-Robert Müller' <Klaus-robert.mueller@tu-berlin.de>
|     Subject: 	Begin of a litigation?
|     
|     Dear Dr. Soeren Sonnenburg, Dear Dr. Prof. Mueller,
|     
|     I had committed to subversion (https://svn.tuebingen.mpg.de/shogun) at
|     03/19/11 00:54:52 the revision 5280.  With this commit I make use of
|     the German law of data privacy (Bundesdatenschutzgesetz §4 Abs. 1).
|     
|     On 03/25/11, 6 days after that commit it was published a revision of
|     Shogun at https://github.com/shogun-toolbox/shogun without my source
|     changes described above.
|     
|     Hereby I'm requesting to apply the patch attached to this mail to
|     https://github.com/shogun-toolbox/shogun until
|     
|       * Tue, 03/29/11 - 12:00 o'clock CEST
|     
|     Otherwise the action described above will be submitted to a lawyer.
|     
|     Yours respectfully
|     D.   Lehmann
|     
|     PS: This is a Class 1 signed (WoT verified) mail in SMIME format.
|     ======= end email full text quote ======
| 
| M	src/.authors
| M	src/ChangeLog
|  
* commit fbd43558c1f7381ce0440bb7be37b51d39012c5e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 28 15:27:16 2011 +0200
| 
|     Revert "my first git commit" in order to apply D.   Lehmanns patch
|     
|     This reverts commit e60583ea7a59c8885b376e71fdce8ea318bfbf8d.
| 
| A	src/.authors
|  
* commit 4e7a7c6eb752d14ddb5f52021a6f2bddaf8e5a13
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 28 12:56:34 2011 +0200
| 
|     my first git commit
| 
| D	src/.authors
|  
* commit 5f960961e647591c70605f772659111a333d5334
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 27 22:55:42 2011 +0200
| 
|     fix typos as pointed out by Yin Zhu - thanks!
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	examples/undocumented/libshogun/kernel_revlin.cpp
|  
* commit ab97bca2ffe8498827ce4650016d634cb65a58e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 27 11:14:49 2011 +0200
| 
|     Include Marina's changes that enables tests for python
| 
| M	examples/undocumented/python/classifier_gmnpsvm.py
| M	examples/undocumented/python/classifier_gpbtsvm.py
| M	examples/undocumented/python/classifier_knn.py
| M	examples/undocumented/python/classifier_lda.py
| M	examples/undocumented/python/classifier_libsvm.py
| M	examples/undocumented/python/classifier_libsvmmulticlass.py
| M	examples/undocumented/python/classifier_libsvmoneclass.py
| M	examples/undocumented/python/classifier_mpdsvm.py
| M	examples/undocumented/python/classifier_perceptron.py
| M	examples/undocumented/python/classifier_svmlight.py
| M	examples/undocumented/python/clustering_hierarchical.py
| M	examples/undocumented/python/clustering_kmeans.py
| M	examples/undocumented/python/distance_braycurtis.py
| M	examples/undocumented/python/distance_canberra.py
| M	examples/undocumented/python/distance_canberraword.py
| M	examples/undocumented/python/distance_chebyshew.py
| M	examples/undocumented/python/distance_chisquare.py
| M	examples/undocumented/python/distance_cosine.py
| M	examples/undocumented/python/distance_euclidian.py
| M	examples/undocumented/python/distance_geodesic.py
| M	examples/undocumented/python/distance_hammingword.py
| M	examples/undocumented/python/distance_jensen.py
| M	examples/undocumented/python/distance_manhatten.py
| M	examples/undocumented/python/distance_manhattenword.py
| M	examples/undocumented/python/distance_minkowski.py
| M	examples/undocumented/python/distance_tanimoto.py
| M	examples/undocumented/python/distribution_histogram.py
| M	examples/undocumented/python/distribution_hmm.py
| M	examples/undocumented/python/distribution_linearhmm.py
| M	examples/undocumented/python/kernel_chi2.py
| M	examples/undocumented/python/kernel_combined.py
| M	examples/undocumented/python/kernel_commulongstring.py
| M	examples/undocumented/python/kernel_commwordstring.py
| M	examples/undocumented/python/kernel_const.py
| M	examples/undocumented/python/kernel_diag.py
| M	examples/undocumented/python/kernel_fixeddegreestring.py
| M	examples/undocumented/python/kernel_gaussian.py
| M	examples/undocumented/python/kernel_gaussianshift.py
| M	examples/undocumented/python/kernel_linear.py
| M	examples/undocumented/python/kernel_linearbyte.py
| M	examples/undocumented/python/kernel_linearstring.py
| M	examples/undocumented/python/kernel_linearword.py
| M	examples/undocumented/python/kernel_localalignmentstring.py
| M	examples/undocumented/python/kernel_localityimprovedstring.py
| M	examples/undocumented/python/kernel_oligostring.py
| M	examples/undocumented/python/kernel_pluginestimatehistogram.py
| M	examples/undocumented/python/kernel_poly.py
| M	examples/undocumented/python/kernel_polymatchstring.py
| M	examples/undocumented/python/kernel_polymatchword.py
| M	examples/undocumented/python/kernel_salzbergstring.py
| M	examples/undocumented/python/kernel_sigmoid.py
| M	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| M	examples/undocumented/python/kernel_weightedcommwordstring.py
| M	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| M	examples/undocumented/python/kernel_weighteddegreestring.py
| M	examples/undocumented/python/mkl_multiclass.py
| M	examples/undocumented/python/mkl_regression.py
| M	examples/undocumented/python/mkl_twoclass.py
| M	examples/undocumented/python/preproc_logplusone.py
| M	examples/undocumented/python/preproc_normone.py
| M	examples/undocumented/python/preproc_prunevarsubmean.py
| M	examples/undocumented/python/preproc_sortulongstring.py
| M	examples/undocumented/python/preproc_sortwordstring.py
| M	examples/undocumented/python/regression_krr.py
| M	examples/undocumented/python/regression_libsvr.py
| M	examples/undocumented/python/regression_svrlight.py
|  
* commit c96ddb6c2ca15c27cf4e507b15819b1c660e0322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:37:33 2011 +0100
| 
|     include data as submodule
| 
| A	.gitmodules
| A	data
|  
* commit 35e492b0490f08ba93d7494b2f7940f4d6b06b4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:32:12 2011 +0100
| 
|     removing symlinked data in favor of git submodule
| 
| D	data
|  
* commit da271d190b1f060eec02b738435dba33ef679072
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 21:22:43 2011 +0100
| 
|     convert svn:ignore to git
| 
| A	.gitignore
|  
* commit 3206c09611e5c5d985b5f7c3cab0fe9824db7abb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 20:32:20 2011 +0100
| 
|     Enable version detection when building from git
| 
| M	src/.version.sh
|  
* commit 63028445dc64a1bc0a26c86c97a7ea1fa96395f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 25 19:30:39 2011 +0100
| 
|     change link location
| 
| M	data
|  
* commit 0e851703f591dbf8a5399f4cf9c98b61403d115a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 17:34:24 2011 +0000
| 
|     fix feature subset
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 51710565c1fd47d1ccccbfdd956c9b97b6c4efa4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 17:18:48 2011 +0000
| 
|     add function to also get feature subset
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit de7963986291c3c2dced9143ee21a5c84af9a3de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 10:35:19 2011 +0000
| 
|     add proper documentation
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit dc9c9fb2cdbdcdb2a7a2af66654508428c77df07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 11 10:22:26 2011 +0000
| 
|     - put d.   lehmans email in authors and update changelog accoringly
|     - implement a subset function for simple features
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/libshogun/features/SimpleFeatures.h
| M	src/modular/Features.i
|  
* commit 3750f11f866526fadd801dbcc53057fb2783d828
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 9 14:02:32 2011 +0000
| 
|     minor documentation fix
| 
| M	src/libshogun/regression/svr/LibSVR.h
|  
* commit 930278cbe1a431410b9c643ea44c9b250c85f0a8
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Mar 4 17:02:37 2011 +0000
| 
|     SVM.cpp: compute_svm_primal_objective(): shortened code in bugfix
|     MKL.* : get_max_train_time() now also leads to quitting MKL optimization if exceeded, not just SVM optimization, i.e. it acts now as total trainnig time
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit a67d1f778200b574ebb1f691e51439d106b05a04
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Mar 4 16:35:51 2011 +0000
| 
|     bugfix: CSVM::compute_primal_svm_objective() now incorporates C2, the regularizer for positive class
| 
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit ae68d12bc2f4e627e1eec6eaa5db32dcb4a92190
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 21 19:03:24 2011 +0000
| 
|     this should fix matlab detection on osx
| 
| M	src/configure
|  
* commit 86178e055acc3054231fbca789d8d55d381c5e56
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 21 12:35:27 2011 +0000
| 
|     use ; instead of ,
| 
| M	src/configure
|  
* commit d93d943932beb637fa7035a6dd54aa777547a282
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 19:15:29 2011 +0000
| 
|     get kpca to work; add default constructor to tron
| 
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/preproc/KernelPCACut.cpp
| M	src/libshogun/preproc/KernelPCACut.h
|  
* commit fa321f38098b1f61271e777f9abb29ea70a5e76e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 13:10:38 2011 +0000
| 
|     finally compiles w/o lapack
| 
| M	src/Makefile.template
| M	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| D	src/libshogun/genomic_signals/SignalModel.cpp
| D	src/libshogun/genomic_signals/SignalModel.h
| D	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| D	src/libshogun/genomic_signals/TrainPredMaster.h
|  
* commit ac00d79ae7ebf2ba25c29ad7ed345e285e08c9a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:41:14 2011 +0000
| 
|     remove IGNORE_CLASSLIST for these too
| 
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/lib/SerializableXmlFile.h
|  
* commit 251b8a395e36d7149c8554c84e5ed5b5095d299b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:39:14 2011 +0000
| 
|     remove IGNORE_CLASS_LIST for those
| 
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
|  
* commit d5e9fc0a3370992c489c59b81f15931781197185
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 12:37:52 2011 +0000
| 
|     let class list detect functions that require certain defines / blacklist others
| 
| M	src/libshogun/base/class_list.cpp.py
|  
* commit 52c83f1f7041f02600db9d66e71d28c64ad128e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 11:24:43 2011 +0000
| 
|     ifdef HAVE_LAPACK in eigenvalue function
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 47599ccf7e6e826e1e096f9295d24f80f9e6d3fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 10:25:08 2011 +0000
| 
|     start implementing kernel pca cut as preproc
| 
| A	src/libshogun/preproc/KernelPCACut.cpp
| A	src/libshogun/preproc/KernelPCACut.h
| M	src/modular/PreProc.i
|  
* commit f966c30a9b728240dc0feda020898168f09756dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 10:23:52 2011 +0000
| 
|     drop shell script to generate class list and replace it with a (slightly more correct) python variant not using regexp magic
| 
| M	src/Makefile.template
| M	src/configure
| A	src/libshogun/base/class_list.cpp.py
| D	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
|  
* commit 6f5ccf60c6fc38d317f16d144fc91d287f483311
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 2 09:38:58 2011 +0000
| 
|     move compute eigenvectors / centering of kernel matrix to lib/Mathematics.
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1a8d754cfb09d13d488ca437565ff417733ff701
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 15:09:26 2011 +0000
| 
|     do apply for get/set_labels also in classifier
| 
| M	src/modular/Classifier.i
|  
* commit 4ac310c3f6ec87c8e6ad8495091375673a53727b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 15:08:11 2011 +0000
| 
|     add the demo from europython talk to examples
| 
| A	examples/undocumented/python_modular/graphical/interactive_svm_demo.py
|  
* commit 5d1d65fea6ae037dd93ce94782067025e2da3202
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 14:46:50 2011 +0000
| 
|     really disable gcc opt flags
| 
| M	src/configure
|  
* commit 57935c18ff21d1966c1b0235b4cb3b7170161920
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 13:22:07 2011 +0000
| 
|     remove the void(tm)
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
|  
* commit 932410a1e6338ecd088200a78b1f7802f667f30a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 1 13:21:32 2011 +0000
| 
|     in debug mode disable optimization
| 
| M	src/configure
|  
* commit 949c3c0f1617ee596f26242dea4935777abfa72c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 27 08:21:24 2011 +0000
| 
|     PCACut preproc now enables access to eigenvalues/eigenvectors of covariance matrix
| 
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
|  
* commit 1eb7cfd939d4279fe694509dcbe984bc6f35fe0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 16:40:57 2011 +0000
| 
|     rename CKernelMachine to KernelMachine
| 
| M	src/modular/Classifier.i
|  
* commit 57f52104d94f4961e43bd25be786cb33489d6983
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 08:00:34 2011 +0000
| 
|     impl. init_optimization based on kernel machine
| 
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
|  
* commit 176aefd826d9da67e7fc338cd48df59ed539a3f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 20 07:28:59 2011 +0000
| 
|     improve error messages when thread creation fails
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 6e293369c21492b57d7a9db591556c9611847f6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 17 07:10:19 2011 +0000
| 
|     name the failing thread
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 088b882bbe63654f7c3ea2a7fd3daacd2669e2f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 17 06:55:59 2011 +0000
| 
|     error handling with multiple threads and parallel get_kernel_matrix
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 30a62f8d9a7eda75d114f1d8ad1e32222a57b080
| Author: Vipin T Sreedharan <vipin.ts@tuebingen.mpg.de>
| Date:   Fri Jan 14 15:30:50 2011 +0000
| 
|     Added non-nucleotide converter function in main code.
| 
| M	applications/easysvm/esvm/experiment.py
| M	applications/easysvm/esvm/mldata.py
| M	applications/easysvm/esvm/mldata_arff.py
|  
* commit 496a4244ecd614ae972e15c04b16cb8d3ef9f202
| Author: Vipin T Sreedharan <vipin.ts@tuebingen.mpg.de>
| Date:   Fri Jan 14 15:30:01 2011 +0000
| 
|     added non-nucleotied converter
| 
| M	applications/easysvm/galaxy/FastaGen.xml
| M	applications/easysvm/galaxy/MotifGen.xml
| M	applications/easysvm/galaxy/easysvm.xml
| M	applications/easysvm/galaxy/eval.xml
| M	applications/easysvm/galaxy/modelsel.xml
| M	applications/easysvm/galaxy/poim.xml
|  
* commit dec40aa6d8c653fc70884d385b6ae967818b863e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 11:16:01 2011 +0000
| 
|     fix another svmlight build failure with linear da svm
| 
| M	src/modular/Classifier.i
|  
* commit 9056e643f3b36321e51bfc32ac001ba4391741bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 10:43:43 2011 +0000
| 
|     fix another compile failure without svmlight
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit 3f6ec456c3f0a7637cbefb060ae5ca304796aa66
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 08:41:04 2011 +0000
| 
|     improve configure help
| 
| M	src/configure
|  
* commit 989d93859c79c365b7009b9a6c01ebfc2ca16afd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 14 08:40:35 2011 +0000
| 
|     fix compilation when SVMLIGHT is not available
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit cc7dbc2d4338d2ab46c0c02febbf1e5c44359929
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 11 16:35:37 2011 +0000
| 
|     fix a memory leak occurring on classify()
| 
| M	src/modular/Classifier.i
|  
* commit fea41e240ab3ea13a053f8f1c3b665e3e3d8b892
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 11 16:01:29 2011 +0000
| 
|     fix a minor memory leak
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit 14eae773c8c8900f96026a9524d0256134a9765f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 9 18:56:10 2011 +0000
| 
|     inlcude labels in classifier (since e.g. one class svm's return such objects. thanks Nedim Srndic for the report.
| 
| M	src/modular/Classifier.i
|  
* commit 4d2698ff39fb551698f3b0ad8777934ee3104b57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 7 17:35:58 2011 +0000
| 
|     update copyright to 2011
| 
| M	src/NEWS
| M	src/libshogun/base/Version.h
|  
* commit dcdea587354f212661107de2fbe6fd77e577cbe6
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 3 17:44:08 2011 +0000
| 
|     added incode example how to use set_randomcoefficients(...)
| 
| M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
|  
* commit f987768422467fa879be37d072b1880c42da61d3
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 3 16:24:47 2011 +0000
| 
|     made class RandomFourierGaussPreproc serializable
| 
| M	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.h
|  
* commit 40bae68cc02de54147f7ca2011d58380ee3befb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 3 12:37:59 2011 +0000
| 
|     integrate Alex's RandomFourierGaussPreproc in the modular interfaces
| 
| M	src/modular/PreProc.i
|  
* commit 4ada773b28ff097436b14563fe65d1a367d8a51d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Dec 30 23:07:59 2010 +0000
| 
|     added example for libshogun
| 
| A	examples/undocumented/libshogun/preproc_randomfouriergauss.cpp
| M	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
|  
* commit 0d767edcc6cfad6070d9f689556a64fdd17c4510
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Dec 30 22:33:18 2010 +0000
| 
|     implemented Random Fourier Gauss Preprocessor
| 
| M	src/libshogun/preproc/PreProc.h
| A	src/libshogun/preproc/RandomFourierGaussPreproc.cpp
| A	src/libshogun/preproc/RandomFourierGaussPreproc.h
|  
* commit 7a2d7fcc05c23ccc006caca4f6ff4a9fd4ad1394
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 12 16:57:44 2010 +0000
| 
|     make some weak learners visible from the python side
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| M	src/modular/Classifier.i
|  
* commit be26ba8e5cfb6ccd9692b7cb6a78ffbaa8a38cb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:32:01 2010 +0000
| 
|     make all includpaths relative to libshogun/
| 
| M	src/libshogun/classifier/boosting/Bandits/Exp3.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| M	src/libshogun/classifier/boosting/Bandits/Random.h
| M	src/libshogun/classifier/boosting/Bandits/UCBK.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| M	src/libshogun/classifier/boosting/IO/ArffParser.h
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| M	src/libshogun/classifier/boosting/IO/GenericParser.h
| M	src/libshogun/classifier/boosting/IO/InputData.h
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| M	src/libshogun/classifier/boosting/IO/ParasiteData.h
| M	src/libshogun/classifier/boosting/IO/RawData.h
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| M	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| M	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| M	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| M	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| M	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| M	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| M	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| M	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| M	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| M	src/libshogun/classifier/boosting/Utils/Args.h
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
|  
* commit dc1262e24ad1f06ebf68c4655c7971bd3eddc7d5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:31:11 2010 +0000
| 
|     add multiboost application
| 
| A	applications/multiboost/Makefile
| A	applications/multiboost/multiboost.cpp
|  
* commit bfdcf12a3e8f27bd3cf90143ed8ee5250e2e9b98
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 13:03:47 2010 +0000
| 
|     - change namespace Multiboost into namespace shogun
|     - limit newobject classify to classifiers
|     - make AdaBoostMHClassifier known from modular interfaces
| 
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| M	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| M	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| M	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| M	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| M	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| M	src/libshogun/classifier/boosting/Bandits/Random.cpp
| M	src/libshogun/classifier/boosting/Bandits/Random.h
| M	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBK.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| M	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| M	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| M	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| M	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| M	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| M	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| M	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| M	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| M	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| M	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| M	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| M	src/libshogun/classifier/boosting/IO/ADTreeData.h
| M	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| M	src/libshogun/classifier/boosting/IO/ArffParser.h
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| M	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| M	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| M	src/libshogun/classifier/boosting/IO/EncodeData.h
| M	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| M	src/libshogun/classifier/boosting/IO/ExtendableData.h
| M	src/libshogun/classifier/boosting/IO/GenericParser.h
| M	src/libshogun/classifier/boosting/IO/HaarData.cpp
| M	src/libshogun/classifier/boosting/IO/HaarData.h
| M	src/libshogun/classifier/boosting/IO/InputData.cpp
| M	src/libshogun/classifier/boosting/IO/InputData.h
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| M	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| M	src/libshogun/classifier/boosting/IO/NameMap.cpp
| M	src/libshogun/classifier/boosting/IO/NameMap.h
| M	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| M	src/libshogun/classifier/boosting/IO/OutputInfo.h
| M	src/libshogun/classifier/boosting/IO/ParasiteData.h
| M	src/libshogun/classifier/boosting/IO/RawData.cpp
| M	src/libshogun/classifier/boosting/IO/RawData.h
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| M	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| M	src/libshogun/classifier/boosting/IO/Serialization.cpp
| M	src/libshogun/classifier/boosting/IO/Serialization.h
| M	src/libshogun/classifier/boosting/IO/SortedData.cpp
| M	src/libshogun/classifier/boosting/IO/SortedData.h
| M	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| M	src/libshogun/classifier/boosting/IO/TxtParser.h
| M	src/libshogun/classifier/boosting/Others/Example.h
| M	src/libshogun/classifier/boosting/Others/Rates.h
| M	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| M	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| M	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| M	src/libshogun/classifier/boosting/Utils/Args.h
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| M	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| M	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| M	src/libshogun/classifier/boosting/Utils/UCTutils.h
| M	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| M	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| M	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| M	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
| M	src/modular/Classifier.i
|  
* commit 2fdccd642ea0dd98f4c4457062a7eb0dfd0f0729
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:45:04 2010 +0000
| 
|     derive a few strong learners from SGObject
| 
| M	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| M	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
|  
* commit 0f4f35dea207fbd1736dd2fe018b11c7fa2b66ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:28:30 2010 +0000
| 
|     experimental merge of multiboost
| 
| M	src/NEWS
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.cpp
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.cpp
| A	src/libshogun/classifier/boosting/Algorithms/ConstantAlgorithmLSHTC.h
| A	src/libshogun/classifier/boosting/Algorithms/RegressionStumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/SparseStumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithm.h
| A	src/libshogun/classifier/boosting/Algorithms/StumpAlgorithmLSHTC.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3G.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3G.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3G2.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3G2.h
| A	src/libshogun/classifier/boosting/Bandits/Exp3P.cpp
| A	src/libshogun/classifier/boosting/Bandits/Exp3P.h
| A	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.cpp
| A	src/libshogun/classifier/boosting/Bandits/GenericBanditAlgorithm.h
| A	src/libshogun/classifier/boosting/Bandits/Random.cpp
| A	src/libshogun/classifier/boosting/Bandits/Random.h
| A	src/libshogun/classifier/boosting/Bandits/UCBK.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBK.h
| A	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBKRandomized.h
| A	src/libshogun/classifier/boosting/Bandits/UCBKV.cpp
| A	src/libshogun/classifier/boosting/Bandits/UCBKV.h
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3GLS.h
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/Exp3LS.h
| A	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/GenericBanditAlgorithmLS.h
| A	src/libshogun/classifier/boosting/BanditsLS/UCTLS.cpp
| A	src/libshogun/classifier/boosting/BanditsLS/UCTLS.h
| A	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.cpp
| A	src/libshogun/classifier/boosting/Bzip2/Bzip2Wrapper.h
| A	src/libshogun/classifier/boosting/Bzip2/blocksort.c
| A	src/libshogun/classifier/boosting/Bzip2/bzip2.c
| A	src/libshogun/classifier/boosting/Bzip2/bzip2recover.c
| A	src/libshogun/classifier/boosting/Bzip2/bzlib.c
| A	src/libshogun/classifier/boosting/Bzip2/bzlib.h
| A	src/libshogun/classifier/boosting/Bzip2/bzlib_private.h
| A	src/libshogun/classifier/boosting/Bzip2/compress.c
| A	src/libshogun/classifier/boosting/Bzip2/crctable.c
| A	src/libshogun/classifier/boosting/Bzip2/decompress.c
| A	src/libshogun/classifier/boosting/Bzip2/dlltest.c
| A	src/libshogun/classifier/boosting/Bzip2/huffman.c
| A	src/libshogun/classifier/boosting/Bzip2/mk251.c
| A	src/libshogun/classifier/boosting/Bzip2/randtable.c
| A	src/libshogun/classifier/boosting/Bzip2/spewG.c
| A	src/libshogun/classifier/boosting/Bzip2/unzcrash.c
| A	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.cpp
| A	src/libshogun/classifier/boosting/Classifiers/ABMHClassifierYahoo.h
| A	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/AdaBoostMHClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/BrownBoostClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/ExampleResults.cpp
| A	src/libshogun/classifier/boosting/Classifiers/ExampleResults.h
| A	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/FilterBoostClassifier.h
| A	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.cpp
| A	src/libshogun/classifier/boosting/Classifiers/LogitBoostClassifier.h
| A	src/libshogun/classifier/boosting/Defaults.h
| A	src/libshogun/classifier/boosting/IO/ADTreeData.cpp
| A	src/libshogun/classifier/boosting/IO/ADTreeData.h
| A	src/libshogun/classifier/boosting/IO/ArffParser.cpp
| A	src/libshogun/classifier/boosting/IO/ArffParser.h
| A	src/libshogun/classifier/boosting/IO/ArffParserBzip2.cpp
| A	src/libshogun/classifier/boosting/IO/ArffParserBzip2.h
| A	src/libshogun/classifier/boosting/IO/EncodeData.cpp
| A	src/libshogun/classifier/boosting/IO/EncodeData.h
| A	src/libshogun/classifier/boosting/IO/ExtendableData.cpp
| A	src/libshogun/classifier/boosting/IO/ExtendableData.h
| A	src/libshogun/classifier/boosting/IO/GenericParser.h
| A	src/libshogun/classifier/boosting/IO/HaarData.cpp
| A	src/libshogun/classifier/boosting/IO/HaarData.h
| A	src/libshogun/classifier/boosting/IO/InputData.cpp
| A	src/libshogun/classifier/boosting/IO/InputData.h
| A	src/libshogun/classifier/boosting/IO/LSHTCParser.cpp
| A	src/libshogun/classifier/boosting/IO/LSHTCParser.h
| A	src/libshogun/classifier/boosting/IO/NameMap.cpp
| A	src/libshogun/classifier/boosting/IO/NameMap.h
| A	src/libshogun/classifier/boosting/IO/OutputInfo.cpp
| A	src/libshogun/classifier/boosting/IO/OutputInfo.h
| A	src/libshogun/classifier/boosting/IO/ParasiteData.h
| A	src/libshogun/classifier/boosting/IO/RawData.cpp
| A	src/libshogun/classifier/boosting/IO/RawData.h
| A	src/libshogun/classifier/boosting/IO/SVMLightParser.cpp
| A	src/libshogun/classifier/boosting/IO/SVMLightParser.h
| A	src/libshogun/classifier/boosting/IO/Serialization.cpp
| A	src/libshogun/classifier/boosting/IO/Serialization.h
| A	src/libshogun/classifier/boosting/IO/SortedData.cpp
| A	src/libshogun/classifier/boosting/IO/SortedData.h
| A	src/libshogun/classifier/boosting/IO/TxtParser.cpp
| A	src/libshogun/classifier/boosting/IO/TxtParser.h
| A	src/libshogun/classifier/boosting/Kmeans/KCtree.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KCtree.h
| A	src/libshogun/classifier/boosting/Kmeans/KCutil.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KCutil.h
| A	src/libshogun/classifier/boosting/Kmeans/KM_ANN.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KM_ANN.h
| A	src/libshogun/classifier/boosting/Kmeans/KMcenters.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMcenters.h
| A	src/libshogun/classifier/boosting/Kmeans/KMdata.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMdata.h
| A	src/libshogun/classifier/boosting/Kmeans/KMeans.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMeans.h
| A	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMfilterCenters.h
| A	src/libshogun/classifier/boosting/Kmeans/KMlocal.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMlocal.h
| A	src/libshogun/classifier/boosting/Kmeans/KMrand.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMrand.h
| A	src/libshogun/classifier/boosting/Kmeans/KMterm.cpp
| A	src/libshogun/classifier/boosting/Kmeans/KMterm.h
| A	src/libshogun/classifier/boosting/Kmeans/files
| A	src/libshogun/classifier/boosting/Others/Example.h
| A	src/libshogun/classifier/boosting/Others/Rates.h
| A	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/ABMHLearnerYahoo.h
| A	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/ADTreeLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/AdaBoostMHLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/BrownBoostLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/FilterBoostLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/GenericStrongLearner.h
| A	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.cpp
| A	src/libshogun/classifier/boosting/StrongLearners/LogitBoostLearner.h
| A	src/libshogun/classifier/boosting/Utils/Args.cpp
| A	src/libshogun/classifier/boosting/Utils/Args.h
| A	src/libshogun/classifier/boosting/Utils/ClassHierarchy.cpp
| A	src/libshogun/classifier/boosting/Utils/ClassHierarchy.h
| A	src/libshogun/classifier/boosting/Utils/MathUtils.cpp
| A	src/libshogun/classifier/boosting/Utils/MathematicalTools.h
| A	src/libshogun/classifier/boosting/Utils/StreamTokenizer.h
| A	src/libshogun/classifier/boosting/Utils/UCTutils.cpp
| A	src/libshogun/classifier/boosting/Utils/UCTutils.h
| A	src/libshogun/classifier/boosting/Utils/Utils.cpp
| A	src/libshogun/classifier/boosting/Utils/Utils.h
| A	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/AbstainableLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditProductLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleSparseStump.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BanditTreeLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/BaseLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ConstantLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/DirichletSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner2.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner3.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearner4.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerKNN.h
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/EnumLearnerSA.h
| A	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/FeaturewiseLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarFeatures.h
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Haar/HaarLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HaarMultiStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HaarSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/HierarchicalStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/IndicatorLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/MultiStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ParasiteLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/ProductLearnerUCT.h
| A	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/RandomSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/Selector.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/Selector.h
| A	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SigmoidSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleRegressionStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStump.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleSparseStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/SingleStumpLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner2.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearner3.h
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/TreeLearnerUCT.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCB1SingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearner.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBKSingleStumpLearnerLSHTC.h
| A	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.cpp
| A	src/libshogun/classifier/boosting/WeakLearners/UCBVHaarSingleStumpLearner.h
|  
* commit 723059d9bd29eb79960200e671e9a5766f7bf49f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 11 06:07:47 2010 +0000
| 
|     use /bin/bash instead of /bin/sh
| 
| M	src/libshogun/base/class_list.cpp.sh
|  
* commit e2a98b488b7bbc76e844b10cb365bbe46395b608
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 17:03:32 2010 +0000
| 
|     mention optimal parameter setting
| 
| M	applications/ocr/train
|  
* commit aa25b6b91b6c93b83497421bb7dc806404a3126e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 17:02:50 2010 +0000
| 
|     update model to new format
| 
| M	applications/ocr/data/ocr.svm.gz
|  
* commit 722aa2101fb2653ce620fff4ecae09c8ca5ba7cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 08:39:50 2010 +0000
| 
|     Fix build failure with ld --as-needed (thanks Matthias Klose for the patch)
| 
| M	src/NEWS
| M	src/configure
|  
* commit f47f39c515d901068b41aae497ef2c423d6a167f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 8 08:36:35 2010 +0000
| 
|     Fix initialization error in KRR static interfaces.
|     Thanks Maxwell Collins for the patch.
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 4669a9868789adb83c9d66a3f37aafb533aa2ff5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:37:27 2010 +0000
| 
|     set permissions
| 
| M	Makefile
|  
* commit 01084f0fac8bf600eafae584a59842b464b1fb08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:13:01 2010 +0000
| 
|     Preparing for new Release shogun_0.10.0
| 
| M	doc/Doxyfile
|  
* commit e0e2c3f8077d835e902cc609bc97929e6d682519
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 14:12:46 2010 +0000
| 
|     also erase data dir on clean
| 
| M	Makefile
|  
* commit e3265e8160d750ec2716b1d4609deee59af1439f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:48:27 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit d16396763a621b87bce7c122111eeb49497bbb73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:32:57 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit edfb7f796e66732514c84110f9be857e582910c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:32:02 2010 +0000
| 
|     and use rsync in transfer
| 
| M	Makefile
|  
* commit 2f9b243bef3d82279324cb66fdfb7755face4443
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 13:29:44 2010 +0000
| 
|     add data in make release script
| 
| M	Makefile
| M	src/NEWS
| M	src/configure
|  
* commit 8ff89c01311190920f7358cdf4e2db4c75c39d72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 12:39:36 2010 +0000
| 
|     create symlinks to the data directory
| 
| M	Makefile
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	src/Makefile.template
| A	testsuite/data
| A	testsuite/tests
|  
* commit 4df6d7615a48d7a25a1951d6fc352454630c3d63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 12:36:46 2010 +0000
| 
|     move the tests to data
| 
| D	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| D	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| D	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| D	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| D	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| D	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| D	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/distance/BrayCurtisDistance_fnord.m
| D	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/CanberraWordDistance_DNA_False_60_3_0.m
| D	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/ChiSquareDistance_fnord.m
| D	testsuite/data/distance/CosineDistance_fnord.m
| D	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/HammingWordDistance_False_DNA_False_60_3_0.m
| D	testsuite/data/distance/HammingWordDistance_True_DNA_False_60_3_0.m
| D	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/ManhattanWordDistance_DNA_False_60_3_0.m
| D	testsuite/data/distance/MinkowskiMetric_13.m
| D	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| D	testsuite/data/distance/TanimotoDistance_fnord.m
| D	testsuite/data/distribution/HMM_1en10_60_4_1_0_6_3_False_CUBE.m
| D	testsuite/data/distribution/Histogram_60_3_0_False_DNA.m
| D	testsuite/data/distribution/LinearHMM_60_3_0_False_DNA.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| D	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_10_230.m
| D	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| D	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| D	testsuite/data/kernel/Gaussian_10_13.m
| D	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| D	testsuite/data/kernel/LinearString_DNA_60.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_fnord.m
| D	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| D	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| D	testsuite/data/kernel/OligoString_DNA_10_3_60_12.m
| D	testsuite/data/kernel/OligoString_DNA_10_4_60_17.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| D	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_FK.m
| D	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_TOP.m
| D	testsuite/data/kernel/Poly_3_10_False.m
| D	testsuite/data/kernel/Poly_3_10_True.m
| D	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/Sigmoid_10_05_07.m
| D	testsuite/data/kernel/Sigmoid_10_11_13.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| D	testsuite/data/kernel/SparseGaussian_10_17.m
| D	testsuite/data/kernel/SparseLinear_fnord.m
| D	testsuite/data/kernel/SparsePoly_3_10_False.m
| D	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
| D	testsuite/data/preproc/LogPlusOne_12_Gaussian.m
| D	testsuite/data/preproc/NormOne_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_False_12_Gaussian.m
| D	testsuite/data/preproc/PruneVarSubMean_True_12_Gaussian.m
| D	testsuite/data/preproc/SortUlongString_DNA_0_CommUlongString_3_60_False.m
| D	testsuite/data/preproc/SortWordString_DNA_0_CommWordString_3_60_False.m
| D	testsuite/data/regression/KRR_16_15_Gaussian_1en05.m
| D	testsuite/data/regression/KRR_1_15_Gaussian_1en05.m
| D	testsuite/data/regression/KRR_1_15_Gaussian_1en06.m
| D	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit 318837794dd19c795c31e06e700dd62f7c8398e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 01:43:37 2010 +0000
| 
|     polish some examples
| 
| M	examples/undocumented/cmdline/kernel_top.sg
| M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| M	examples/undocumented/python_modular/regression_svrlight_modular.py
| A	examples/undocumented/python_modular/serialization_complex_example.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	testsuite/python_modular/tester.py
|  
* commit cebaa96f4d0208b8a698b67bc3bf57a1abecf231
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 7 01:25:34 2010 +0000
| 
|     many further serialization fixes
| 
| M	src/NEWS
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
|  
* commit d93c69c1bff60806e91025c7d7f8a4b0d7f065d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 5 21:13:06 2010 +0000
| 
|     - fix wd kernel weight setting and serialization
|     - check for x<0 in log(x) in jensenmetric
| 
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DataType.h
|  
* commit d1c2280cf78dfb641392e2c609a536c2737e2818
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 23:13:16 2010 +0000
| 
|     fix serialization for LIK
| 
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit 4592fe48c60bb74d78248cc971ca08aec7831276
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 22:20:05 2010 +0000
| 
|     larank/liblinear/kmeans are random algorithms and need special initialisation
| 
| M	examples/undocumented/python_modular/classifier_larank_modular.py
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| M	examples/undocumented/python_modular/distance_hammingword_modular.py
|  
* commit 62f02737e08a7763aac8a7a1b2892de8652f11b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 22:19:25 2010 +0000
| 
|     fix serialization for most of the distances and some kernels / kernelnormalizers
| 
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/CustomDistance.cpp
| M	src/libshogun/distance/CustomDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
|  
* commit 25056d36f0d763ca1151f5bfa91b8fd9344a542d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 14:13:39 2010 +0000
| 
|     get most of the tests back to work
| 
| M	examples/undocumented/cmdline/kernel_top.sg
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| M	examples/undocumented/python_modular/distribution_hmm_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit 653751caa4faf9961d7f4287bc3432d189e65c53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 11:27:49 2010 +0000
| 
|     disable HMM/TOP/FK feature serializaton for now
| 
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/features/FKFeatures.cpp
|  
* commit 26c3c4ccdcdf74325e427ed058687d55f5ae7ffc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 3 10:44:37 2010 +0000
| 
|     various further serialization fixes
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/Trie.h
|  
* commit e78cb78be235a15917bb111024c758546f9907a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 20:45:25 2010 +0000
| 
|     fix examples for serialization
| 
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
|  
* commit e40acbb9d043761e13a3abb34cb1962a6af7a0a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 20:44:51 2010 +0000
| 
|     further serialization fixes
| 
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
| M	src/libshogun/lib/List.h
|  
* commit 8cf7b49265e570438d2684a24b51b35643c1f178
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 2 16:59:36 2010 +0000
| 
|     further serialization fixes
| 
| M	src/libshogun/base/Parameter.cpp
| M	src/libshogun/base/Parameter.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/lib/List.h
|  
* commit 15ed7964199641cf8487af3e230c0c5099d1e4f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 11:20:44 2010 +0000
| 
|     Always call base class constructor also in kernel normalizers.
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit f1b02d0007c48eb21a2a889749412569cff844b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 10:06:58 2010 +0000
| 
|     further fixes
| 
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/StringKernel.h
|  
* commit 25c9bcb95cc0b904b05b85096d833a836012bcdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 08:38:16 2010 +0000
| 
|     fix / implement serialization for various classes
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/List.h
|  
* commit 3403666f43955d8dd9e53f05269abee9e00f0864
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 1 08:37:46 2010 +0000
| 
|     improve generator/tester outputs
| 
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit a7ede2359179c6856506dcdda116686101b340d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 22:39:02 2010 +0000
| 
|     improve generator / tester
| 
| M	testsuite/python_modular/generator.py
| M	testsuite/python_modular/tester.py
|  
* commit ace4151bbac0f564bc5e5bded1da7d9e685cf07f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 22:16:40 2010 +0000
| 
|     fix the remaining examples
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| M	examples/undocumented/python_modular/features_simple_longint_modular.py
| M	examples/undocumented/python_modular/features_simple_modular.py
| M	examples/undocumented/python_modular/features_simple_real_modular.py
| M	examples/undocumented/python_modular/features_snp_modular.py
| M	examples/undocumented/python_modular/features_sparse_modular.py
| M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| M	examples/undocumented/python_modular/features_string_char_modular.py
| M	examples/undocumented/python_modular/features_string_file_char_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| M	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| M	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| M	examples/undocumented/python_modular/features_string_ulong_modular.py
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
|  
* commit bc889a95d320916e3fb9195b4129f1417b109d2b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 30 13:50:08 2010 +0000
| 
|     fix a few more examples
| 
| M	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| M	examples/undocumented/python_modular/features_simple_byte_modular.py
| M	examples/undocumented/python_modular/features_string_word_modular.py
| M	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
|  
* commit 329a6c80340e9967866b945e86f60191fcc3731c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 21:10:31 2010 +0000
| 
|     fix a few examples
| 
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/distribution_hmm_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	testsuite/python_modular/generator.py
|  
* commit 5f85746253ebedcc34b3078b8e514ecebaaa3384
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 19:32:04 2010 +0000
| 
|     - move tester / generator to trunk/testsuite/python_modular/
|     - merge marinas example changes
|     - fix path in d.l.'s ocr detector
| 
| M	applications/ocr/data/ocr.svm.gz
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| M	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| M	examples/undocumented/python_modular/classifier_knn_modular.py
| M	examples/undocumented/python_modular/classifier_larank_modular.py
| M	examples/undocumented/python_modular/classifier_lda_modular.py
| M	examples/undocumented/python_modular/classifier_liblinear_modular.py
| M	examples/undocumented/python_modular/classifier_libsvm_modular.py
| M	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| M	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| M	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| M	examples/undocumented/python_modular/classifier_perceptron_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_modular.py
| M	examples/undocumented/python_modular/classifier_svmlin_modular.py
| M	examples/undocumented/python_modular/classifier_svmocas_modular.py
| M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| M	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| M	examples/undocumented/python_modular/clustering_kmeans_modular.py
| M	examples/undocumented/python_modular/distance_braycurtis_modular.py
| M	examples/undocumented/python_modular/distance_canberra_modular.py
| M	examples/undocumented/python_modular/distance_canberraword_modular.py
| M	examples/undocumented/python_modular/distance_chebyshew_modular.py
| M	examples/undocumented/python_modular/distance_chisquare_modular.py
| M	examples/undocumented/python_modular/distance_cosine_modular.py
| M	examples/undocumented/python_modular/distance_euclidian_modular.py
| M	examples/undocumented/python_modular/distance_geodesic_modular.py
| M	examples/undocumented/python_modular/distance_hammingword_modular.py
| M	examples/undocumented/python_modular/distance_jensen_modular.py
| M	examples/undocumented/python_modular/distance_manhatten_modular.py
| M	examples/undocumented/python_modular/distance_manhattenword_modular.py
| M	examples/undocumented/python_modular/distance_minkowski_modular.py
| M	examples/undocumented/python_modular/distance_normsquared_modular.py
| M	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| M	examples/undocumented/python_modular/distance_tanimoto_modular.py
| M	examples/undocumented/python_modular/distribution_histogram_modular.py
| M	examples/undocumented/python_modular/distribution_linearhmm_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| D	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_chi2_modular.py
| M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| M	examples/undocumented/python_modular/kernel_combined_modular.py
| M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_const_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/kernel_diag_modular.py
| M	examples/undocumented/python_modular/kernel_distance_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_poly_modular.py
| M	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| M	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| M	examples/undocumented/python_modular/kernel_top_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
| M	examples/undocumented/python_modular/preproc_logplusone_modular.py
| M	examples/undocumented/python_modular/preproc_normone_modular.py
| M	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| M	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| M	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| M	examples/undocumented/python_modular/regression_krr_modular.py
| M	examples/undocumented/python_modular/regression_libsvr_modular.py
| M	examples/undocumented/python_modular/regression_svrlight_modular.py
| D	examples/undocumented/python_modular/tester.py
| M	src/libshogun/base/Parameter.cpp
| A	testsuite/python_modular/README
| A	testsuite/python_modular/generator.py
| A	testsuite/python_modular/tester.py
|  
* commit 261dab5e04652932b0490295e5974f77303f7bbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 09:56:44 2010 +0000
| 
|     move parameter into /base and really fix memory leak in combined dot features
| 
| A	src/libshogun/base/Parameter.cpp
| A	src/libshogun/base/Parameter.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/List.h
| D	src/libshogun/lib/Parameter.cpp
| D	src/libshogun/lib/Parameter.h
| M	src/modular/SGBase.i
|  
* commit bf7277a16e87857020ea983f96973fc0af0d7aab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 29 08:23:41 2010 +0000
| 
|     merge SGSerializable into SGObject and make ref/unref thread-safe again
| 
| M	examples/undocumented/python_modular/serialization_svmlight_modular.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| D	src/libshogun/lib/SGSerializable.cpp
| D	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHdf5File.cpp
| M	src/libshogun/lib/SerializableHdf5Reader00.cpp
| M	src/libshogun/lib/SerializableJsonFile.cpp
| M	src/libshogun/lib/SerializableJsonReader00.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogunui/GUIPreProc.cpp
| M	src/modular/SGBase.i
|  
* commit d0d91be1b32f7155d425f7969bb45dcc0c5ce8b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 22:21:43 2010 +0000
| 
|     simplify code
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit ce5faf5b20682e0df3c3d3e8a8545a0b389b3f6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 14:44:57 2010 +0000
| 
|     fix sparse features under python modular
| 
| M	src/libshogun/features/SparseFeatures.h
| M	src/modular/Features.i
|  
* commit 54f2ce4909a30f2a5b5306d507673e3f3d608bcf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:59:27 2010 +0000
| 
|     get structure modul back to work
| 
| M	src/modular/Structure.i
|  
* commit 75b4ea3c1bef50223630cb4e56a0a5dbd4fbc32f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:37:06 2010 +0000
| 
|     fix hdf5file
| 
| M	src/libshogun/lib/HDF5File.h
|  
* commit ee155baa90400f3bd9beab000c272c1b6d3ea173
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:36:53 2010 +0000
| 
|     fix broken examples
| 
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/features_string_file_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
|  
* commit a75ed8ee24a2fba9609ccd674b475f323642c59d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 28 13:20:59 2010 +0000
| 
|     fix linear term
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/regression/svr/SVRLight.cpp
| M	src/modular/Classifier.i
|  
* commit 016223aaf23eb32973072e5ef8fe1983e755786d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:57:13 2010 +0000
| 
|     potentially fix memory leak in analogy to combinedfeatures
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit 8970f6dbc225ff7f8bcc41721daf51418b56f6bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:42:00 2010 +0000
| 
|     revert commit r5138, causing reference counting related crashes:
|     
|     e.g. this function
|     
|     CSGSerializable* get_first_element()
|     {
|     	return obj;
|     }
|     
|     is racy, since it forgets to ref() obj.
| 
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/List.h
|  
* commit a52d5013d08ca4b897c2ec1e6271c8c28b12f2b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 27 23:37:32 2010 +0000
| 
|     fix compilation with dynarray
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/lib/DynamicArray.h
|  
* commit 9a5a027c5c0f3cf3be2df0fab942e4bedd5949e5
| Author: D. Lehmann <>
| Date:   Sat Nov 27 00:14:35 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Closes <1290809148.4590.29.camel@no.ml.tu-berlin.de> ...
|     
|            !!! FUCK OFF Soeren !!!
| 
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/List.h
|  
* commit 14cc6cb16b725c739da24fb93b1e5e47e9a3d165
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 26 23:15:00 2010 +0000
| 
|     remove linear term std vector and fix crasher when linear term is not set
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/modular/Classifier.i
|  
* commit 2f49263cd3294586224be4203c438ce4a8138df7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 26 22:37:28 2010 +0000
| 
|     compile fix for trunk
| 
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
|  
* commit 866367137e6049b56c6a5c372191f00cd38e2bfe
| Author: D. Lehmann <>
| Date:   Fri Nov 26 22:02:45 2010 +0000
| 
|     * examples/undocumented/python_modular/tester.py
|     
|       - Works (in cooperation with Marina).
| 
| M	examples/undocumented/python_modular/tester.py
|  
* commit b1c105ab2b1911ba060fa39e8f450eddf9a661d5
| Author: D. Lehmann <>
| Date:   Fri Nov 26 21:58:49 2010 +0000
| 
|     * src/*
|     
|       - Backup ...
|     
|     * applications/ocr/data/ocr.svm.gz
|     
|       - Adapting new format.
| 
| M	applications/ocr/data/ocr.svm.gz
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/DynamicArrayPtr.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableHdf5File.h
| M	src/libshogun/lib/SerializableJsonFile.h
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|  
* commit bc4534ec76f83ccb9249a2ef143e9d64ca6ef9a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 24 07:09:46 2010 +0000
| 
|     fix example and update news
| 
| M	examples/undocumented/libshogun/kernel_revlin.cpp
| M	src/NEWS
|  
* commit c95aaae3cfda5538e54d00d643d8e4e5e90064a2
| Author: D. Lehmann <>
| Date:   Wed Nov 24 00:06:36 2010 +0000
| 
|     * applications/ocr/*
|     
|       - Adapting example to serialization, using PICKLE.
|     
|     * src/libshogun/*
|     
|       - Replacing some STD::VECTOR's with T*
| 
| M	applications/ocr/Ai.py
| M	applications/ocr/common.py
| M	applications/ocr/data/ocr.svm.gz
| D	applications/ocr/data/ocr.svm.head
| M	applications/ocr/predict
| M	src/libshogun/base/init.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiReader00.cpp
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlReader00.cpp
| M	src/libshogun/regression/svr/SVRLight.cpp
|  
* commit c37cb0c65f24f38d10c6687834c193d3ded47843
| Author: D. Lehmann <>
| Date:   Tue Nov 23 20:18:40 2010 +0000
| 
|     * src/libshogun/lib/Serializable*{File,Reader00}.{h,cpp}
|     
|       - Versioning support for all file formats at serialization level.
|     
|     * src/configure
|     
|       - libxml2 version >= 2.7.0 is required.
|     
|     * src/libshogun/lib/Serializable{Ascii,Xml}*
|     
|       - Using [sf]PRINTF's `%g' for floating point IO.
|     
|     * src/libshogun/lib/DataType.h
|     
|       - T_SPARSE_ENTRY::__DUMMY removed.  Not tested on 64-bit machines.
|         I need to check-in my current implementation first.  If there is
|         no commit at the next few hours then it works ;) ...
| 
| M	src/configure
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| A	src/libshogun/lib/SerializableAsciiReader00.cpp
| A	src/libshogun/lib/SerializableAsciiReader00.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHdf5File.cpp
| M	src/libshogun/lib/SerializableHdf5File.h
| A	src/libshogun/lib/SerializableHdf5Reader00.cpp
| A	src/libshogun/lib/SerializableHdf5Reader00.h
| M	src/libshogun/lib/SerializableJsonFile.cpp
| M	src/libshogun/lib/SerializableJsonFile.h
| A	src/libshogun/lib/SerializableJsonReader00.cpp
| A	src/libshogun/lib/SerializableJsonReader00.h
| M	src/libshogun/lib/SerializableXmlFile.cpp
| M	src/libshogun/lib/SerializableXmlFile.h
| A	src/libshogun/lib/SerializableXmlReader00.cpp
| A	src/libshogun/lib/SerializableXmlReader00.h
|  
* commit f14a1abf64b7494ac815ac790be8663bf4f4345e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 23 12:38:41 2010 +0000
| 
|     improve tester/generator and gausskernel example
| 
| M	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| M	examples/undocumented/python_modular/tester.py
|  
* commit d51c1b9e080f0d756a46f44fc403d2e4b591d396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 23 11:48:19 2010 +0000
| 
|     add marinas test generator and tester
| 
| M	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| M	examples/undocumented/python_modular/classifier_knn_modular.py
| A	examples/undocumented/python_modular/generator.py
| M	examples/undocumented/python_modular/kernel_auc_modular.py
| M	examples/undocumented/python_modular/kernel_chi2_modular.py
| M	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| M	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| M	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_const_modular.py
| M	examples/undocumented/python_modular/kernel_custom_modular.py
| M	examples/undocumented/python_modular/kernel_diag_modular.py
| M	examples/undocumented/python_modular/kernel_distance_modular.py
| M	examples/undocumented/python_modular/kernel_fisher_modular.py
| M	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| M	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_modular.py
| M	examples/undocumented/python_modular/kernel_linear_string_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| M	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
| A	examples/undocumented/python_modular/tester.py
|  
* commit 771fe857954d54d6a5d9c64fddf3034f4f8a7c20
| Author: D. Lehmann <>
| Date:   Sun Nov 21 23:28:26 2010 +0000
| 
|     * src/libshogun/lib/SerializableXmlFile.{h,cpp}
|     
|       - Added.
|     
|     * src/libshogun/lib/SerializableJSONFile.{h,cpp}
|     
|       - Renamed to `SerializableJsonFile'.
|     
|     * src/libshogun/lib/SerializableHDF5File.{h,cpp}
|     
|       - Renamed to `SerializableHdf5File'.
| 
| M	src/configure
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| D	src/libshogun/lib/SerializableHDF5File.cpp
| D	src/libshogun/lib/SerializableHDF5File.h
| A	src/libshogun/lib/SerializableHdf5File.cpp
| A	src/libshogun/lib/SerializableHdf5File.h
| D	src/libshogun/lib/SerializableJSONFile.cpp
| D	src/libshogun/lib/SerializableJSONFile.h
| A	src/libshogun/lib/SerializableJsonFile.cpp
| A	src/libshogun/lib/SerializableJsonFile.h
| A	src/libshogun/lib/SerializableXmlFile.cpp
| A	src/libshogun/lib/SerializableXmlFile.h
| M	src/modular/Library.i
|  
* commit 013b208fe0089e7c6f461526c0964c2b1e417a5c
| Author: D. Lehmann <>
| Date:   Thu Nov 18 01:42:39 2010 +0000
| 
|     * src/libshogun/classifier/svm/{DomainAdaptationSVM,LibLinear}.h
|     
|       - Closes:
|     
|         <AANLkTi=eoR4sNhvP1orSbc_HWm7vKk1voPt4GKckYy0b@mail.gmail.com>
|     
|         Compiling error if `./configure --disable-lapack'.
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 42b651afa9e3196697531a9bc73d47e8ba274677
| Author: D. Lehmann <>
| Date:   Wed Nov 17 21:14:16 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Improving SERIALIZBALE_HDF5_FILE for faster access to persistent
|         storage.
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| M	src/libshogun/lib/SerializableJSONFile.cpp
| M	src/libshogun/lib/SerializableJSONFile.h
|  
* commit 08a7c1af6d4c03d328a45da1762a48f2ea54ba82
| Author: D. Lehmann <>
| Date:   Mon Nov 15 16:25:05 2010 +0000
| 
|     * src/libshogun/lib/SerializableJSONFile.{h,cpp}
|     
|       - Works.
|     
|     * src/libshogun/lib/DataType.h
|     
|       - 64 bit compatible.
| 
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableJSONFile.cpp
| M	src/libshogun/lib/SerializableJSONFile.h
|  
* commit de185f31adf06dd8ed60ec426e9f92249e90f3c7
| Author: D. Lehmann <>
| Date:   Sun Nov 14 20:22:24 2010 +0000
| 
|     * src/*
|     
|       - Sparse r/w, String r/w implemented.
|     
|       - JSON feature test implemented.
|     
|     BORING?! O.O -- Hearing KB's - fr08 =) ... YEEEAH, GREAT
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/configure
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/LibSVMFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| A	src/libshogun/lib/SerializableJSONFile.cpp
| A	src/libshogun/lib/SerializableJSONFile.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Library.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit 6522af2a9122a1ae2c398d887caf76f7a51e2fa6
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 12 10:50:02 2010 +0000
| 
|     removed exclusion flags
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 0a9436f9d486e82273c72976f722182d88b3d9ee
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Nov 11 12:39:11 2010 +0000
| 
|     fixed indentation
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
|  
* commit c07a0f8078ef51c6399fa77f535131f1fe5169ef
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 21:19:25 2010 +0000
| 
|     fixed issue with default constructor
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 8b9abc40e304619216cdfd85a48ff1bc70007909
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 20:49:02 2010 +0000
| 
|     small fix
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 41b6136cd73d81ab061adc9c2c28d7305b8489bd
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Nov 10 20:20:58 2010 +0000
| 
|     added serialization code to a few linear classifiers (still incomplete)
| 
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
|  
* commit 619661eac08fa85ef4f607102ccc99b4db8ecbec
| Author: D. Lehmann <>
| Date:   Sun Nov 7 17:42:23 2010 +0000
| 
|     * src/*
|     
|       - reverted to revision 5113 ... too many pointers :((
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit f2b0b4eb224447ca82d48d74b53931ee7f1c6b95
| Author: D. Lehmann <>
| Date:   Sat Nov 6 03:26:18 2010 +0000
| 
|     * src/*
|     
|       - String(Features) are storable :)
|     
|       - Matlab (R) binding not tested; no license.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit 19669f51b9b86b470cfcff397fb3d607bb74de27
| Author: D. Lehmann <>
| Date:   Fri Nov 5 12:20:49 2010 +0000
| 
|     * src/libshogun/kernel/MultitaskKernelMaskNormalizer.h,
|       src/libshogun/kernel/Kernel.h
|     
|       - Missing include added.  Thanks to xjc =)
| 
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
|  
* commit c22461075c7ac32d23e1d9d0c4daaef038191027
| Author: D. Lehmann <>
| Date:   Thu Nov 4 16:50:13 2010 +0000
| 
|     * src/libshogun/base/DynArray.h
|     
|       - Fixes compiling issue.
| 
| M	src/libshogun/base/DynArray.h
|  
* commit 24d247178b8c7c3a7723c8a9d0333e1bfcc0a580
| Author: D. Lehmann <>
| Date:   Thu Nov 4 15:50:15 2010 +0000
| 
|     * src/modular/SGBase.i
|     
|       - All Python Pickle protocols are supported now.  The protocols are
|         using:
|     
|           + 0: SERIALIZABLE_ASCII_FILE
|     
|           + otherwise: SERIALIZABLE_HDF5_FILE
|     
|           + fallback: SERIALIZABLE_ASCII_FILE
|     
|     * src/libshogun/*
|     
|       - SG_SERIALIZABLE::LOAD_SERIALIZABLE_{PRE,POST} added.  An example
|         implementation you can find in CALPHABET::LOAD_SERIALIZABLE_POST.
| 
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/modular/Distribution.i
| M	src/modular/SGBase.i
|  
* commit 1e354c644e171a47abe5b242243522644a84a957
| Author: D. Lehmann <>
| Date:   Wed Nov 3 12:42:54 2010 +0000
| 
|     src/libshogun/lib/ShogunException.{h,cpp}
|     
|       - SHOGUN_EXCEPTION leaks during tracing the stack.
| 
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
|  
* commit bf820966860c6c4bda0bcba73e77b78f6c44cee8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 1 20:33:14 2010 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 96bc036f203851d0eaba0435e2f306de74161930
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 1 20:05:34 2010 +0000
| 
|     remove cruft from kmeans
| 
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
|  
* commit 52de185af24d93059427ec8a495ff474d436c838
| Author: D. Lehmann <>
| Date:   Mon Nov 1 12:11:26 2010 +0000
| 
|     * src/libshogun/kernel/MultitaskKernelNormalizer.h
|     
|       - Missing #INCLUDE, using C workaround.
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit a3a36129496a1385b98226dcd507748f5650f992
| Author: D. Lehmann <>
| Date:   Mon Nov 1 11:56:11 2010 +0000
| 
|     * src/configure
|     
|       - HDF5 version 1.8.0 or greater is required.
| 
| M	src/configure
|  
* commit ecd8cfe6fb3b9515f2356629efdf41f93bfa43bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 29 21:35:05 2010 +0000
| 
|     compile fix
| 
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
|  
* commit 2c40410209e1bdda0edda150f168b710f71853ad
| Author: D. Lehmann <>
| Date:   Fri Oct 29 21:23:37 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - Forgotten to REF fresh instantiated SG_SERIALIZABLE's during
|         loading =)
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 26bfda127c431df29616f62b1c8033ec07372ca1
| Author: D. Lehmann <>
| Date:   Fri Oct 29 21:01:51 2010 +0000
| 
|     * src/*
|     
|       - Reading of SERIALIZABLE_HDF5_FILE seems to be work.
|     
|       - Reloading seems to be work (SG_UNREF during loading a
|         SG_SERIALIZABLE instead of DELETE)
|     
|       - Un-/Pickling of Shogun objects (in Python) seems to be work.
|     
|     Current working example; check if output is empty:
|     
|       * (h5diff -c blaah* && diff pickle*) | grep -v '^Not comparable'
|     
|     
|         *** snip ***
|     
|     # ********************************************************************
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     import pickle as pkl
|     
|     num = 5; dist = 1; dim = 10
|     
|     data = concatenate((randn(dim, num), randn(dim, num) + dist,
|                         randn(dim, num) + 2*dist,
|                         randn(dim, num) + 3*dist), axis=1)
|     lab = concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats = RealFeatures(data)
|     kernel = GaussianKernel(feats, feats, 2.1)
|     
|     labels = Labels(lab)
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     
|     feats.add_preproc(NormOne())
|     feats.add_preproc(LogPlusOne())
|     feats.add_preproc(NormDerivativeLem3())
|     feats.set_preprocessed(1)
|     svm.train(feats)
|     
|     #svm.print_serializable()
|     
|     fstream = SerializableHDF5File("blaah.h5", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     f = open("pickle.pkl", 'w'); pkl.dump(svm, f); f.close()
|     
|     svm = GMNPSVM()
|     fstream = SerializableHDF5File("blaah.h5", "r")
|     if svm.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableHDF5File("blaah2.h5", "w")
|     svm.save_serializable(fstream)
|     
|     f = open("pickle.pkl", 'r'); svm = pkl.load(f); f.close()
|     f = open("pickle2.pkl", 'w'); pkl.dump(svm, f); f.close()
|     
|     print "*** End\n"
|     
|     # ********************************************************************
|     
|         *** snap ***
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableHDF5File.cpp
| M	src/libshogun/lib/SerializableHDF5File.h
| M	src/modular/SGBase.i
|  
* commit a4c25c743ed2398bda84eb433a89a068291eb8eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 08:25:19 2010 +0000
| 
|     add code to serialize WD kernel / alphabet and a few kernel normalizers
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| D	src/libshogun/features/SimpleFeatures.cpp
| D	src/libshogun/features/StringFeatures.cpp
| D	src/libshogun/kernel/AvgDiagKernelNormalizer.cpp
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| D	src/libshogun/kernel/FirstElementKernelNormalizer.cpp
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| D	src/libshogun/kernel/IdentityKernelNormalizer.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| D	src/libshogun/kernel/KernelNormalizer.cpp
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 98b3152822f58f763023f648e4201e98b8f88f96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 04:12:49 2010 +0000
| 
|     remove boost serialisation support
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/common.h
|  
* commit 0e554371e69f14134c6d5851faea8a100174fab9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 28 03:32:43 2010 +0000
| 
|     keep track of changes in news
| 
| M	src/NEWS
|  
* commit ce8f23faef237145a69f43159f2d44d02e703175
| Author: D. Lehmann <>
| Date:   Wed Oct 27 23:02:23 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Writing of SERIALIZABLE_HDF5_FILE seems to be work.  The code
|         snippet attached to this log produces the HDF5 structure (HDFView
|         screenshot):
|     
|           * http://www.user.tu-berlin.de/ldirk/etc/hdfview-gmnpsvm.png
|     
|         It looks nice if you can visualize your data structures =) ...
|     
|     * src/modular/Library.i
|     
|       - Class SERIALIZABLE_HDF5_FILE added.
|     
|     
|         *** snip ***
|     
|     # ********************************************************************
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     num=5; dist=1; dim=10
|     
|     data=concatenate((randn(dim, num), randn(dim, num) + dist,
|                       randn(dim, num) + 2*dist,
|                       randn(dim, num) + 3*dist), axis=1)
|     lab=concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats=RealFeatures(data)
|     kernel=GaussianKernel(feats, feats, 2.1)
|     
|     labels=Labels(lab)
|     
|     svm = GMNPSVM(1, kernel, labels)
|     
|     feats.add_preproc(NormOne())
|     feats.add_preproc(LogPlusOne())
|     feats.add_preproc(NormDerivativeLem3())
|     feats.set_preprocessed(1)
|     svm.train(feats)
|     
|     #svm.print_serializable()
|     
|     fstream = SerializableHDF5File("blaah.h5", "w")
|     #fstream = SerializableAsciiFile("blaah.asc", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     # ********************************************************************
|     
|         *** snap ***
| 
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| A	src/libshogun/lib/SerializableHDF5File.cpp
| A	src/libshogun/lib/SerializableHDF5File.h
| M	src/modular/Library.i
|  
* commit 1660f9cb2f8d03bdfe3e087364baffc833ea09e9
| Author: D. Lehmann <>
| Date:   Wed Oct 27 13:38:03 2010 +0000
| 
|     * src/libshogun/base/DynArray.h:
|     
|       - Fixes a reallocation issue.  Previous implementation is only
|         working because of a good GNU REALLOC implementation.  In the case
|         of DynArray::delete_element() the last element was not longer
|         allocated!  Use mtrace or corresponding tools to check this case.
| 
| M	src/libshogun/base/DynArray.h
|  
* commit f89760476f9f9a68e0b83aed83fb98283e3aa410
| Author: D. Lehmann <>
| Date:   Tue Oct 26 11:26:35 2010 +0000
| 
|     * src/libshogun/base/class_list.cpp.templ:
|     
|       - Closes <4CC5E0D6.5010403@gmail.com>; Thanks to Koen :)
| 
| M	src/libshogun/base/class_list.cpp.templ
|  
* commit da693c0c2a0b5636ea365dd2b85ac4fb0fc7c36d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 26 01:45:50 2010 +0000
| 
|     remaining fixes to allow for huge custom kernels
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit 45b66cc0e32f134b341bbb65c03762f4e704d481
| Author: D. Lehmann <>
| Date:   Thu Oct 21 00:24:07 2010 +0000
| 
|     * trunk/*
|     
|       - Recovering revision 5093.
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| A	src/libshogun/base/class_list.cpp.sh
| A	src/libshogun/base/class_list.cpp.templ
| A	src/libshogun/base/class_list.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| A	src/libshogun/classifier/svm/GMNPLib.cpp
| A	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPLib.cpp
| A	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/QPBSVMLib.cpp
| A	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| D	src/libshogun/classifier/svm/gmnplib.cpp
| D	src/libshogun/classifier/svm/gmnplib.h
| D	src/libshogun/classifier/svm/gnpplib.cpp
| D	src/libshogun/classifier/svm/gnpplib.h
| D	src/libshogun/classifier/svm/qpbsvmlib.cpp
| D	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 63adb5e671e3eec44614c9977fdc0ae3f6f47b22
| Author: D. Lehmann <>
| Date:   Sat Oct 16 02:05:32 2010 +0000
| 
|     * trunk/*
|     
|       - reverting revisions: 5080, 5081, 5082, 5083, 5084, 5085, 5086,
|         5089, 5090, 5091, 5092, 5093
|     
|     
|     Note: In the following text we mean differences `between revision
|           x-1:x' if we are speaking from `revision difference x'.
|     
|     Since I have loss my state as employee of the `Technical University
|     Berlin - Machine Learning/Intelligent Data Analysis' backdated to
|     September 30, 2010 the following revision differences (of October
|     2010) has COPYRIGHT by `(C) 2010 - Dirk J. Lehmann' and were NEVER be
|     published under the terms of the `GNU General Public License':
|     
|       * <https://svn.tuebingen.mpg.de/shogun> revisions: 5080, 5081, 5082,
|         5083, 5084, 5085, 5086, 5089, 5090, 5091, 5092, 5093
|     
|     These revision differences are NOT ALLOWED to (re-)distribute, neither
|     in source nor in any kind of binary code!  To make sure that you are
|     going legal, please update your source tree either to revision 5079
|     (or previous) or to revision 5094 (or later).
|     
|     Thanks for reading,
|     Dirk Lehmann.
|     
|     PS: Need a job!  If you are interested than send an email to
|         <mailto:jobless.dirk@gmx.de> because I don't know how long my
|         ldirk@mail.tu-... account will be available.
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| D	src/libshogun/base/class_list.cpp.sh
| D	src/libshogun/base/class_list.cpp.templ
| D	src/libshogun/base/class_list.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| D	src/libshogun/classifier/svm/GMNPLib.cpp
| D	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| D	src/libshogun/classifier/svm/GNPPLib.cpp
| D	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| D	src/libshogun/classifier/svm/QPBSVMLib.cpp
| D	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| A	src/libshogun/classifier/svm/gmnplib.cpp
| A	src/libshogun/classifier/svm/gmnplib.h
| A	src/libshogun/classifier/svm/gnpplib.cpp
| A	src/libshogun/classifier/svm/gnpplib.h
| A	src/libshogun/classifier/svm/qpbsvmlib.cpp
| A	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit d2247b482d3d9b8d50c5549c416e30871d87f2dd
| Author: D. Lehmann <>
| Date:   Wed Oct 13 16:43:04 2010 +0000
| 
|     * src/libshogun/*
|     
|       - New common type STRING_T added.
|     
|       - New common type MACHINE_INT_T added.
|     
|       - @Soeren: Corrupt memory free'ing fixed in GaussianKernel.
|     
|       - Some minor fixes which could be misuse the stack.
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/common.h
|  
* commit d6580e061c340b801b6999314bc8849a0538e1ef
| Author: D. Lehmann <>
| Date:   Mon Oct 11 03:11:16 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Saving and loading of GMNPSVM seems to be work.  Test it for your
|         own (consider the files `blaah{,2}.asc' after execution):
|     
|         *** snip ***
|     
|     from numpy import *; from numpy.random import randn
|     from shogun.Features import *; from shogun.Classifier import *;
|     from shogun.Kernel import *; from shogun.Library import *;
|     from shogun.PreProc import *
|     
|     num=5; dist=1;
|     
|     data=concatenate((randn(2,num), randn(2,num) + dist,
|                       randn(2,num) + 2*dist,
|                       randn(2,num) + 3*dist), axis=1)
|     lab=concatenate((zeros(num), ones(num), 2*ones(num), 3*ones(num)))
|     
|     feats=RealFeatures(data)
|     kernel=GaussianKernel(feats, feats, 2.1)
|     
|     labels=Labels(lab)
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     svm.train(feats)
|     
|     svm.print_serializable()
|     
|     fstream = SerializableAsciiFile("blaah.asc", "w")
|     if svm.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     svm = GMNPSVM()
|     #feats = RealFeatures()
|     fstream = SerializableAsciiFile("blaah.asc", "r")
|     if svm.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableAsciiFile("blaah2.asc", "w")
|     svm.save_serializable(fstream)
|     
|     print "*** End\n"
|     
|         *** snap ***
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.cpp.templ
| M	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/GMNPLib.cpp
| M	src/libshogun/classifier/svm/GNPPLib.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/QPBSVMLib.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
| M	src/libshogun/preproc/StringPreProc.h
|  
* commit f26b12b6460da90d70eb568fba8811705d75100c
| Author: D. Lehmann <>
| Date:   Fri Oct 8 21:29:45 2010 +0000
| 
|     * src/*
|     
|       - Removing `C' prefix from class-names which are not inheriting from
|         CSG_SERIALIZBABLE.
|     
|       - Moving files which are implementing classes of the scheme `class
|         C??? :public CSGSerializable' to `???.{h,cpp}'.
|     
|       - Adding default constructors for classes which are inheriting from
|         CSG_SERIALIZBABLE (highly development state; parts where generated
|         by scripts!!!).
|     
|       - Marking classes which are depending on system configuration as
|         IGNORE_IN_CLASSLIST.
|     
|     * Ready for implementing HDF5 and much bug reports ;P ...  Let's go...
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/base/DynArray.h
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| A	src/libshogun/classifier/svm/GMNPLib.cpp
| A	src/libshogun/classifier/svm/GMNPLib.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPLib.cpp
| A	src/libshogun/classifier/svm/GNPPLib.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/QPBSVMLib.cpp
| A	src/libshogun/classifier/svm/QPBSVMLib.h
| M	src/libshogun/classifier/svm/SVMLight.h
| M	src/libshogun/classifier/svm/SVMLightOneClass.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| D	src/libshogun/classifier/svm/gmnplib.cpp
| D	src/libshogun/classifier/svm/gmnplib.h
| D	src/libshogun/classifier/svm/gnpplib.cpp
| D	src/libshogun/classifier/svm/gnpplib.h
| D	src/libshogun/classifier/svm/qpbsvmlib.cpp
| D	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/KernelDistance.cpp
| M	src/libshogun/distance/KernelDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distributions/GHMM.h
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| M	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| M	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVRLight.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/SGBase.i
|  
* commit 80317fcd4b3c875e27e986e1a1ee6b37c8824b64
| Author: D. Lehmann <>
| Date:   Thu Oct 7 14:50:50 2010 +0000
| 
|     * src/libshogun/lib/*
|     
|       - Some minor fixes to prevent segmentation faults during reading
|         corrupt file formats.
|     
|     * src/libshogun/base/class_list.*
|     
|       - License stuff added.
| 
| M	src/libshogun/base/class_list.cpp.sh
| M	src/libshogun/base/class_list.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
|  
* commit 9f0613a8d80301e55c08e1d72445a1acd26ebf1a
| Author: D. Lehmann <>
| Date:   Wed Oct 6 19:45:29 2010 +0000
| 
|     ATTENTION: Reconfiguring of your source tree is required after this
|                update!
|     
|     The mechanism for serialization should now be powerful enough to adapt
|     the remaining code and implement other kinds of
|     SERIALIZABLE_ASCII_FILE's.  So it's the best time for any kinds of
|     reports to this topic, in example to the mailing list.  A simple
|     Python snippet to feel what's going on [after execution take a look to
|     the file `blaah.asc' and `blaah2.asc'...  A `diff' of these should be
|     hopefully an empty string ;) ]:
|     
|       *** snip ***
|     
|     from numpy import *; from numpy.random import randn
|     from Features import *; from Classifier import *
|     from Kernel import *; from Library import *
|     from PreProc import *
|     
|     num=1000; dist=1;
|     
|     data=concatenate((randn(2,num)-dist, randn(2,num)+dist), axis=1)
|     lab=concatenate((-ones(num), ones(num)));
|     
|     feats=RealFeatures(data);
|     kernel=GaussianKernel(feats, feats, 2.1);
|     
|     labels=Labels(lab);
|     
|     print "*** Begin\n"
|     
|     svm = GMNPSVM(1, kernel, labels)
|     feats.add_preproc(NormOne())
|     feats.add_preproc(NormOne())
|     feats.add_preproc(NormOne())
|     
|     feats.print_serializable()
|     
|     fstream = SerializableAsciiFile("blaah.asc", "w")
|     if feats.save_serializable(fstream): print "OK writing\n"
|     else: print "ERROR writing\n"
|     
|     #svm = GMNPSVM()
|     feats = RealFeatures()
|     fstream = SerializableAsciiFile("blaah.asc", "r")
|     if feats.load_serializable(fstream): print "OK reading\n"
|     else: print "ERROR reading\n"
|     
|     fstream = SerializableAsciiFile("blaah2.asc", "w")
|     feats.save_serializable(fstream)
|     
|     print "*** End\n"
|     
|       *** snap ***
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.h
| A	src/libshogun/base/class_list.cpp.sh
| A	src/libshogun/base/class_list.cpp.templ
| A	src/libshogun/base/class_list.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SGSerializable.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
| M	src/libshogun/preproc/NormOne.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 9b1cc372c693b8e9cae01376740083493a28a22b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 5 14:50:43 2010 +0000
| 
|     added missing #ifdef HAVE_LAPACK to allow compiling shogun in absence of Lapack
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
|  
* commit af70bb3c0490522732fe41d5dc02f69e03082005
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 5 14:39:05 2010 +0000
| 
|     add HistogramIntersectionKernel written by Koen van de Sande
| 
| A	src/libshogun/kernel/HistogramIntersectionKernel.cpp
| A	src/libshogun/kernel/HistogramIntersectionKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/modular/Kernel.i
|  
* commit 69545a6faab2dc1b7ad4d692cd411f4b07cd6177
| Author: D. Lehmann <>
| Date:   Tue Oct 5 14:16:01 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Backup before greater structure changes.
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
|  
* commit 97ae53a4039ffdb87e8e217410c6f163c1870803
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:47:14 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - EXIT()'s removed.
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 3e8af63fd7a75731c3ebeea113b7da7d5f38980f
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:25:17 2010 +0000
| 
|     * src/libshogun/lib/Parameter.cpp
|     
|       - Right error message after structure change.
| 
| M	src/libshogun/lib/Parameter.cpp
|  
* commit 0fb3a7874a81324500c855d667159aaa419a27ac
| Author: D. Lehmann <>
| Date:   Mon Oct 4 18:12:37 2010 +0000
| 
|     * src/libshogun/*
|     
|       - Loading and saving to CSGSERIAL_ASCII_FILE seems to be work for
|         non-abstract classes.
|     
|       - Templates for CPARAMETER::ADD*() removed, we are using overloading
|         instead.
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
|  
* commit 1fa36982a728f2e14c179b39be4f38f1f2662125
| Author: D. Lehmann <>
| Date:   Mon Oct 4 10:20:04 2010 +0000
| 
|     * src/libshogun/*
|     
|       - !Reloading! into/from SERIALIZABLE_ASCII_FILE seems to be work.
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableAsciiFile.h
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/libshogun/lib/SerializableFile.h
|  
* commit 94b6ed8a4928133c88b75e7370a55cb0cb2afa60
| Author: D. Lehmann <>
| Date:   Mon Oct 4 01:54:59 2010 +0000
| 
|     * src/libshogun/base/init.cpp
|     
|       - locale fix of revision 5034 completed ;P ...
| 
| M	src/libshogun/base/init.cpp
|  
* commit 2196ff569fe7ae0973fc42c2953a7ea94758c3ae
| Author: D. Lehmann <>
| Date:   Fri Oct 1 13:34:05 2010 +0000
| 
|     * src/*
|     
|       - We are using templates to add Parameters to support generic
|         classes...  In the future we can use overloading instead.  Sorry
|         for defiance :((
|     
|       - Backup and Weekend =) ...
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/libshogun/lib/SerializableAsciiFile.cpp
| M	src/libshogun/lib/SerializableFile.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit fb612a1639c23067ae5cd46ffb9e7f4a24d944ed
| Author: D. Lehmann <>
| Date:   Thu Sep 30 13:21:16 2010 +0000
| 
|     * src/libshogun/features/Labels.{h,cpp}
|     
|       - Reverting to revision 5067.
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
|  
* commit 9057b3b8d44d3471a259b482c1557e4605aa8bc9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Sep 30 12:30:35 2010 +0000
| 
|     commented out code for hot start
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
|  
* commit 819e69aca214eaa59ee7a6c45fff640528c88c68
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Sep 30 12:24:57 2010 +0000
| 
|     adapted solver type
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
|  
* commit 00ca15614d9da5c1a94fcab889335faddeeaa0e0
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 29 15:55:31 2010 +0000
| 
|     added regtrick for liblinear
| 
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.cpp
| A	src/libshogun/classifier/svm/DomainAdaptationSVMLinear.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/modular/Classifier.i
|  
* commit 175e7a89b4f880fd6df453c1daa1c8e03b145650
| Author: D. Lehmann <>
| Date:   Wed Sep 29 15:02:47 2010 +0000
| 
|     * src/*
|     
|      - Reverting wrong changes of revision 5074.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/HDF5File.cpp
| M	src/matlab/MatlabInterface.cpp
| M	src/modular/Features.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
|  
* commit 1b70e91139aa4911062fb2468c76f6b9a8e980c0
| Author: D. Lehmann <>
| Date:   Wed Sep 29 14:33:16 2010 +0000
| 
|     * src/*
|     
|       - Renaming of `T_STRING' to `CSGString' done.
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumRBFKernel.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/LibSVMFile.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/modular/Features.i
| M	src/modular/Structure.i
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/octave_modular/swig_typemaps.i
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/python_modular/swig_typemaps.i
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| M	src/r_modular/swig_typemaps.i
|  
* commit aac6cdacf7bf1c1982d6d5465111d3e00ee9cd5a
| Author: D. Lehmann <>
| Date:   Wed Sep 29 14:18:58 2010 +0000
| 
|     * src/*
|     
|       - Backup before renaming `T_STRING' to `CSGString'.
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/DataType.cpp
| M	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| A	src/libshogun/lib/SGSerializable.cpp
| A	src/libshogun/lib/SGSerializable.h
| D	src/libshogun/lib/SerialAsciiFile.cpp
| D	src/libshogun/lib/SerialAsciiFile.h
| D	src/libshogun/lib/SerialFile.cpp
| D	src/libshogun/lib/SerialFile.h
| A	src/libshogun/lib/SerializableAsciiFile.cpp
| A	src/libshogun/lib/SerializableAsciiFile.h
| A	src/libshogun/lib/SerializableFile.cpp
| A	src/libshogun/lib/SerializableFile.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|    
*   commit 26190777f0dc4913362db90d7ebeb28768409408
|\  Merge: 1fe5d31 b7d035a
| | Author: D. Lehmann <>
| | Date:   Wed Sep 29 10:38:04 2010 +0000
| | 
| |     * src/libshogun/
| |     
| |       - Backup before new class `SGSerializable'.
| |     
| |     * src/modular/Library.i
| |     
| |       - `SerialAsciiFile' added.
| |   
* | commit 1fe5d3142c5d2d5b623e0e13d7044efc48a79379
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Sep 27 12:23:14 2010 +0000
| | 
| |     improve example for labels
| | 
| | M	examples/undocumented/python_modular/features_io_modular.py
| |     
* |   commit f0c2856c5984590b27a3bd8cca4c6c3d424cecae
|\ \  Merge: 337b2c8 b7d035a
| |/  Author: D. Lehmann <>
| |   Date:   Fri Sep 24 10:32:12 2010 +0000
| |   
| |       * src/python/PythonInterface.{h,cpp}
| |       
| |         - Include path changed.
| |       
| |       * src/cmdline/CmdLineInterface.{h,cpp}
| |       
| |         - Include path changed.
| |       
| |       * src/libshogun/*
| |       
| |         - New TSGDatatype structure and related migrated code.
| |       
| |         - New methods: SGObject::serial_print(), SGObject::serial_save(),
| |           SGObject::serial_load()
| |       
| |         - No semantic API changes.
| |   
| * commit b7d035aaff52f370597bc1c2c9c82dc26c83e164
| | Author: D. Lehmann <>
| | Date:   Mon Sep 20 11:16:03 2010 +0000
| | 
| |     * parameter/src/libshogun/lib/*
| |     
| |       - Compiles on systems where the feature test estimates HAVE_HDF5.
| | 
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/HDF5File.cpp
| | M	src/libshogun/lib/HDF5File.h
| |   
| * commit 80288d4f339ff71f6fe2d9a6b4cac9774ff901dd
| | Author: D. Lehmann <>
| | Date:   Sun Sep 19 23:44:21 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Writing of AsciiFile seems to work with primitive datatypes and
| |         `CSGObject's under python_modular binding :DD
| | 
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/lib/AsciiFile.cpp
| | M	src/libshogun/lib/AsciiFile.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| | M	src/libshogun/lib/common.h
| |   
| * commit 32058f6928ad847af7c804c09e6128697eebb204
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 21:20:43 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Minor fixes ...  bedtime =)
| | 
| | M	src/libshogun/lib/Parameter.cpp
| |   
| * commit 9819e55cca8962ba3bc259474123d5572b3baea6
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 20:56:44 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - Adding of primitive scalar parameters and CSGObjects seems to be
| |         work.
| |     
| |       - New public method `CSGObject::params_list(const char* prefix="")'
| |         added!
| | 
| | A	src/libshogun/base/DynArray.h
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/KernelMachine.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/kernel/Kernel.h
| | M	src/libshogun/kernel/KernelNormalizer.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/DynamicArray.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit 187277516a71d8afe4ce575039484c034a4da72b
| | Author: D. Lehmann <>
| | Date:   Sat Sep 18 10:39:20 2010 +0000
| | 
| |     * parameter/*
| |     
| |       - python_modular compiles
| | 
| | M	src/libshogun/classifier/svm/SVM.cpp
| | A	src/libshogun/lib/AsciiFile.cpp
| | A	src/libshogun/lib/AsciiFile.h
| | A	src/libshogun/lib/BinaryFile.cpp
| | A	src/libshogun/lib/BinaryFile.h
| | A	src/libshogun/lib/HDF5File.cpp
| | A	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit 126073dc0a06c5ca94e0d05f25ab26ee13b386ed
| | Author: D. Lehmann <>
| | Date:   Fri Sep 17 14:54:09 2010 +0000
| | 
| |     * parameter/* backup
| |     
| |       - compiles
| | 
| | M	src/libshogun/features/Labels.cpp
| | M	src/libshogun/features/SimpleFeatures.h
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/kernel/Kernel.cpp
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/Parameter.h
| |   
| * commit eec4c0edc7364e5432c951ef30f4bf2e4a799086
| | Author: D. Lehmann <>
| | Date:   Fri Sep 17 11:57:48 2010 +0000
| | 
| |     * parameter/libshogun/*
| |     
| |       - Initial checkin of current work.
| | 
| | M	src/libshogun/base/SGObject.cpp
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | D	src/libshogun/lib/AsciiFile.cpp
| | D	src/libshogun/lib/AsciiFile.h
| | D	src/libshogun/lib/BinaryFile.cpp
| | D	src/libshogun/lib/BinaryFile.h
| | M	src/libshogun/lib/DataType.h
| | M	src/libshogun/lib/File.cpp
| | M	src/libshogun/lib/File.h
| | D	src/libshogun/lib/HDF5File.cpp
| | D	src/libshogun/lib/HDF5File.h
| | M	src/libshogun/lib/Parameter.cpp
| | M	src/libshogun/lib/Parameter.h
| |   
* | commit 337b2c8dcbb0c91407c5ab41788cf09e47dcb419
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Thu Sep 23 06:37:37 2010 +0000
|   
|       ensure that svmlight is run without linadd for scatter svm
|   
|   M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 2cbec7a53e4678baf4f97223b0ed93cc3c75386a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 17 09:51:01 2010 +0000
| 
|     enable L1 regularized liblinear
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 004faac5c0da2e6e7715499609f13219b761aa92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 15 15:30:53 2010 +0000
| 
|     simplify kernel print cases and remove default case
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d3f02f4f71b9de7b86ed817bdfb3483ba2bc9641
| Author: D. Lehmann <>
| Date:   Wed Sep 15 13:48:23 2010 +0000
| 
|     * src/libshogunui/*
|     
|       - Fixes compile probelems since revision 5054
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 8067370dad840ec660ca57dfbd445a54d44637f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 20:14:59 2010 +0000
| 
|     fix tests for sparse*kernels
| 
| M	testsuite/data/kernel/SparseGaussian_10_17.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
|  
* commit fff2fec234c74d05a7a5db4deddcfcbf8cf0a7a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 20:14:43 2010 +0000
| 
|     get svrlight to work again
| 
| M	src/modular/Regression.i
|  
* commit 2b92b29862e6c0ba773c6a6ffd09705d1096b913
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 12:07:30 2010 +0000
| 
|     convert gaussian/poly/linear kernel to dotfeatures and get rid of features type/class specific obsolete sparse*{gaussian,poly,linear}kernels (that are now handled nicely in the gaussian/poly/linear) ones.
| 
| M	examples/undocumented/python_modular/kernel_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| M	examples/undocumented/python_modular/kernel_linear_word_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| M	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| D	src/libshogun/kernel/SparseGaussianKernel.cpp
| D	src/libshogun/kernel/SparseGaussianKernel.h
| D	src/libshogun/kernel/SparseLinearKernel.cpp
| D	src/libshogun/kernel/SparseLinearKernel.h
| D	src/libshogun/kernel/SparsePolyKernel.cpp
| D	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Kernel.i
| M	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| M	testsuite/data/kernel/LinearWord_fnord.m
|  
* commit a1ed05bf2b00251a25d85f994a631b3341323226
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 14 07:24:09 2010 +0000
| 
|     - drop CSimpleKernel and introduce CDotKernel as its base class: This way all dot-product based kernels can be applied on top of DotFeatures. For example, now only a single implementation of the linear and polynomial kernel is required to support all kinds of feature types (dense/sparse/... byte/float/...). This required an API change in CDotFeatures' dot() function.
|     - add initial code for sparse spatial sample string kernel (not yet working)
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| A	src/libshogun/kernel/DotKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/Kernel.h
| D	src/libshogun/kernel/LinearByteKernel.cpp
| D	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| D	src/libshogun/kernel/LinearWordKernel.cpp
| D	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| D	src/libshogun/kernel/SimpleKernel.cpp
| D	src/libshogun/kernel/SimpleKernel.h
| A	src/libshogun/kernel/SparseSpatialSampleStringKernel.cpp
| A	src/libshogun/kernel/SparseSpatialSampleStringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Kernel.i
|  
* commit 380480814df1e3f524d49a711c44278a15209b91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 10 15:58:14 2010 +0000
| 
|     add toy data
| 
| A	data
|  
* commit 3133bd7400707d2df25fcfc87b12c4d0b5796f79
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 6 11:21:19 2010 +0000
| 
|     move ocr demo also to applications
| 
| A	applications/ocr/Ai.py
| A	applications/ocr/FigureWidget.py
| A	applications/ocr/MatrixWidget.py
| A	applications/ocr/QuadrWidget.py
| A	applications/ocr/README
| A	applications/ocr/common.py
| A	applications/ocr/data/ocr.svm.gz
| A	applications/ocr/data/ocr.svm.head
| A	applications/ocr/data/train_data_x.asc.gz
| A	applications/ocr/data/train_data_y.asc.gz
| A	applications/ocr/predict
| A	applications/ocr/train
| D	examples/undocumented/python_modular/ocr/Ai.py
| D	examples/undocumented/python_modular/ocr/FigureWidget.py
| D	examples/undocumented/python_modular/ocr/MatrixWidget.py
| D	examples/undocumented/python_modular/ocr/QuadrWidget.py
| D	examples/undocumented/python_modular/ocr/README
| D	examples/undocumented/python_modular/ocr/common.py
| D	examples/undocumented/python_modular/ocr/data/ocr.svm.gz
| D	examples/undocumented/python_modular/ocr/data/ocr.svm.head
| D	examples/undocumented/python_modular/ocr/data/train_data_x.asc.gz
| D	examples/undocumented/python_modular/ocr/data/train_data_y.asc.gz
| D	examples/undocumented/python_modular/ocr/predict
| D	examples/undocumented/python_modular/ocr/train
|  
* commit dad6223a9bfff45e65e8ff04ccba4d29b3bc85b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:57:18 2010 +0000
| 
|     symlink msplicer data
| 
| A	applications/msplicer/data
|  
* commit c3e02146bb52dda4c6961b820eea47de52334296
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:56:46 2010 +0000
| 
|     symlink easysvm data
| 
| A	applications/easysvm/data
|  
* commit 558216a0507d078eee8bb9339fee63dabc1e4a0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:56:18 2010 +0000
| 
|     symlink asp data
| 
| A	applications/asp/data
|  
* commit 459413bdb9efe0455bedcd8c95a1e8e7423ffc4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:55:47 2010 +0000
| 
|     symlink arts data
| 
| M	applications/arts/arts
| A	applications/arts/data
|  
* commit 6e679ad89b7b7fda891a8e17a7fd0d0e501c6ac4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 4 07:21:51 2010 +0000
| 
|     move toydata also to data/toy
| 
| D	data/DynProg_example.dat
| D	data/DynProg_example_py.dat.mat
| D	data/DynProg_example_py.pickle.gz
| D	data/fm_test_byte.dat
| D	data/fm_test_byte_transposed.dat
| D	data/fm_test_cube.dat
| D	data/fm_test_dna.dat
| D	data/fm_test_real.dat
| D	data/fm_test_real_transposed.dat
| D	data/fm_test_sparsereal.dat
| D	data/fm_test_word.dat
| D	data/fm_test_word_transposed.dat
| D	data/fm_train_byte.dat
| D	data/fm_train_byte_transposed.dat
| D	data/fm_train_cube.dat
| D	data/fm_train_dna.dat
| D	data/fm_train_real.dat
| D	data/fm_train_real_transposed.dat
| D	data/fm_train_sparsereal.dat
| D	data/fm_train_word.dat
| D	data/fm_train_word_transposed.dat
| D	data/label_train_dna.dat
| D	data/label_train_dna42.dat
| D	data/label_train_multiclass.dat
| D	data/label_train_twoclass.dat
| D	data/train_sparsereal.light
|  
* commit f0cd519d6a62f0db2214ce030819d32522dc48eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 16:08:55 2010 +0000
| 
|     remove huge data files
| 
| D	applications/easysvm/data/README
|  
* commit f91ffd23f57a0f195103c8af5d22f5ff907f3de1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 14:59:10 2010 +0000
| 
|     move applications back to trunk
| 
| A	applications/arts/arts
| A	applications/arts/convert_artsmat.m
| A	applications/arts/genomic.py
| A	applications/arts/signal_sensor.py
| A	applications/arts/util.py
| A	applications/asp/LICENSE
| A	applications/asp/Makefile
| A	applications/asp/NEWS
| A	applications/asp/README
| A	applications/asp/asp
| A	applications/asp/convert_mat.m
| A	applications/asp/dna.fa
| A	applications/asp/genomic.py
| A	applications/asp/model.py
| A	applications/asp/seqdict.py
| A	applications/asp/signal_detectors.py
| A	applications/easysvm/AUTHORS
| A	applications/easysvm/LICENSE
| A	applications/easysvm/MANIFEST.in
| A	applications/easysvm/README
| A	applications/easysvm/data/README
| A	applications/easysvm/dependencies/antlr_python_runtime-3.0.1.tar.gz
| A	applications/easysvm/dependencies/arff-1.0c.tar.gz
| A	applications/easysvm/dist/easysvm-0.1.tar.gz
| A	applications/easysvm/dist/easysvm-0.2.tar.gz
| A	applications/easysvm/dist/easysvm-0.3.tar.gz
| A	applications/easysvm/distutils-help.txt
| A	applications/easysvm/esvm/__init__.py
| A	applications/easysvm/esvm/datafuncs.py
| A	applications/easysvm/esvm/experiment.py
| A	applications/easysvm/esvm/mldata.py
| A	applications/easysvm/esvm/mldata_arff.py
| A	applications/easysvm/esvm/parse.py
| A	applications/easysvm/esvm/plots.py
| A	applications/easysvm/esvm/poim.py
| A	applications/easysvm/esvm/utils.py
| A	applications/easysvm/galaxy/CloudGen.xml
| A	applications/easysvm/galaxy/FastaGen.xml
| A	applications/easysvm/galaxy/MotifGen.xml
| A	applications/easysvm/galaxy/README
| A	applications/easysvm/galaxy/easysvm.xml
| A	applications/easysvm/galaxy/eval.xml
| A	applications/easysvm/galaxy/modelsel.xml
| A	applications/easysvm/galaxy/poim.xml
| A	applications/easysvm/scripts/datagen.py
| A	applications/easysvm/scripts/easysvm.py
| A	applications/easysvm/setup.py
| A	applications/easysvm/splicesites/__init__.py
| A	applications/easysvm/splicesites/test_gc.py
| A	applications/easysvm/splicesites/tutorial_example.py
| A	applications/easysvm/splicesites/utils.py
| A	applications/msplicer/LICENSE
| A	applications/msplicer/Makefile
| A	applications/msplicer/NEWS
| A	applications/msplicer/README
| A	applications/msplicer/content_sensors.py
| A	applications/msplicer/convert_mat.m
| A	applications/msplicer/dna.fa
| A	applications/msplicer/genomic.py
| A	applications/msplicer/model.py
| A	applications/msplicer/msplicer
| A	applications/msplicer/plif.py
| A	applications/msplicer/seqdict.py
| A	applications/msplicer/signal_detectors.py
| A	applications/sailfish/Makefile
| A	applications/sailfish/sailfish.cpp
| A	applications/sailfish/scripts/generate_mask.py
| M	doc/Doxyfile
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	examples/undocumented/r/graphical/hmm.R
| M	examples/undocumented/r/graphical/svm_classification.R
| M	examples/undocumented/r/kernel_linear.R
|  
* commit 240610063c4c66e7b80870e84ba2ae3d7aaac6f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 13:32:11 2010 +0000
| 
|     struct->class typo fix
| 
| M	src/libshogun/lib/File.h
|  
* commit 420d90416519c06f597a9ff4bb88c7befab3114d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 12:56:22 2010 +0000
| 
|     fix button shortcuts
| 
| M	examples/undocumented/python_modular/ocr/predict
|  
* commit 46e591adf6f38dbc7e5ea4f3758758ed8098f44a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 09:55:39 2010 +0000
| 
|     set C locale on startup in init_shogun to prevent incompatiblies with fprintf and floating point separators
| 
| M	src/libshogun/base/init.cpp
|  
* commit 971aad1a80077e8a97b3d1f442bc1f3284409e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 3 08:53:14 2010 +0000
| 
|     add some readme
| 
| A	examples/undocumented/python_modular/ocr/README
| M	examples/undocumented/python_modular/ocr/predict
|  
* commit 99cd9451ae75b46db40ffe25ff488d6f97fbee44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 1 21:29:55 2010 +0000
| 
|     move data to data/ directory and rename main -> predict, main-train -> train
| 
| M	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/data/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/data/ocr.svm.head
| A	examples/undocumented/python_modular/ocr/data/train_data_x.asc.gz
| A	examples/undocumented/python_modular/ocr/data/train_data_y.asc.gz
| D	examples/undocumented/python_modular/ocr/main-train.py
| D	examples/undocumented/python_modular/ocr/main.py
| D	examples/undocumented/python_modular/ocr/ocr.svm.gz
| D	examples/undocumented/python_modular/ocr/ocr.svm.head
| A	examples/undocumented/python_modular/ocr/predict
| A	examples/undocumented/python_modular/ocr/train
| D	examples/undocumented/python_modular/ocr/train_data_x.asc.gz
| D	examples/undocumented/python_modular/ocr/train_data_y.asc.gz
|  
* commit 95febf9c335cf3847587851f9998c1fec92af08d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 1 21:27:35 2010 +0000
| 
|     some minor modifications / beautifications
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/main-train.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| M	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit e9da9a8ab79278affec2ac40a4c8cef0834fb8ea
| Author: D. Lehmann <>
| Date:   Wed Sep 1 16:34:47 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr/*:
|     
|       - Buttons removed: `load classifier', `train error', `test error'.
|     
|       - History has two rows
|     
|       - Buttons (`Go!', `clear') are smaller.
|     
|       - Do `Go!'-action on middle click at the FIGURE_WIDGET.
|     
|       - Trainings data (ocr.svm.*) changed.
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/FigureWidget.py
| M	examples/undocumented/python_modular/ocr/common.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| M	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit 128cbb07317194b7d67875d269a794cd37177f7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 30 05:30:43 2010 +0000
| 
|     warn that LDA/liblinear and other features may be missing when lapack is not available
| 
| M	src/configure
|  
* commit 77a3fb4941da52c40bad36bd71ef539ca911e945
| Author: D. Lehmann <>
| Date:   Thu Aug 19 15:29:41 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr/*:
|     
|       - Lines are lines ...  Don't worry if you does not understand this
|         sentence ;P
|     
|       - The training is a command line program and is outsided from the
|         GUI tool.  It tests for the best validation error.
| 
| M	examples/undocumented/python_modular/ocr/Ai.py
| M	examples/undocumented/python_modular/ocr/FigureWidget.py
| M	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/main-train.py
| M	examples/undocumented/python_modular/ocr/main.py
| M	examples/undocumented/python_modular/ocr/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/ocr.svm.head
|  
* commit db72681f99670dbe637c6f51ba82cbebd1844ee6
| Author: D. Lehmann <>
| Date:   Wed Aug 18 17:34:26 2010 +0000
| 
|     * src/libshogun/kernel/GaussianKernel.h:
|     
|       - public get_width() added.
| 
| M	src/libshogun/kernel/GaussianKernel.h
|  
* commit 425ed713df53de609e5ecbc57797b2970ff772be
| Author: Nico Goernitz <Nico.Goernitz@tu-berlin.de>
| Date:   Wed Aug 18 14:05:13 2010 +0000
| 
|     configure changed for matlab 2010a
| 
| M	src/configure
|  
* commit b5f035a4f9ddca26b07c2bc3aaa1e4741f82be1f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 18 12:19:13 2010 +0000
| 
|     wrap pr_loqo
| 
| A	examples/undocumented/matlab_and_octave/misc_pr_loqo.m
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 69016ce021d77cb71cfe35915130222eb8066a8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 17 20:09:45 2010 +0000
| 
|     - use SG_ABS_PROGRESS to do gmnp progress and different calculation routine
|     - some more parameter ideas for serialization/model selection
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
|  
* commit 04418ba4385dffc0024eef927b14794c18be6cea
| Author: D. Lehmann <>
| Date:   Tue Aug 17 12:44:24 2010 +0000
| 
|     * examples/undocumented/python_modular/ocr added:
|     
|       - OCR example ... Have fun =)
|     
|       - Make sure that LC_ALL="" before running.
|     
|     * examples/undocumented/python_modular/ocr/ocr.svm.gz:
|     
|       - Format for LC_ALL="C" (converted)
| 
| A	examples/undocumented/python_modular/ocr/Ai.py
| A	examples/undocumented/python_modular/ocr/FigureWidget.py
| A	examples/undocumented/python_modular/ocr/MatrixWidget.py
| A	examples/undocumented/python_modular/ocr/QuadrWidget.py
| A	examples/undocumented/python_modular/ocr/common.py
| A	examples/undocumented/python_modular/ocr/main.py
| A	examples/undocumented/python_modular/ocr/ocr.svm.gz
| A	examples/undocumented/python_modular/ocr/train_data_x.asc.gz
| A	examples/undocumented/python_modular/ocr/train_data_y.asc.gz
|  
* commit 03cf8a9c17e178de5a9444a772cf6cac2efc1dc9
| Author: D. Lehmann <>
| Date:   Tue Aug 17 12:07:41 2010 +0000
| 
|     * src/libshogun/classifier/svm/gmnp*
|     
|       - Progress output added.
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
|  
* commit 19c84b9b069fb63702c28a38886aa9c8f83b02b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 12 07:04:05 2010 +0000
| 
|     remove some debug msg occurring in static interfaces with poly kernel
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 1e8fe89b519f37cf50e14f7a26b17ce2659ac1e3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Aug 9 09:13:13 2010 +0000
| 
|     moved API changes to separate branch for now
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| D	src/modular/Shogun.i
| M	src/modular/Structure.i
|  
* commit 71c694667db97f32840538e20ba20635ec3763a7
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Sun Aug 8 14:27:46 2010 +0000
| 
|     more work towards getting serialization working for WDK
| 
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/SimpleFeatures.cpp
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/kernel/FirstElementKernelNormalizer.cpp
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit a77b26b65fb4d9ee0a1438e343df6925c4a32d50
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 21:21:37 2010 +0000
| 
|     packed everything into one large shared object (_Shogun.so) to get serialization to work from the modular interfaces.
| 
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| A	src/modular/Shogun.i
| M	src/modular/Structure.i
|  
* commit 4735872287edbd91118120ec73ce8d2793c08b8e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 18:55:31 2010 +0000
| 
|     added serialization support for a few kernel normalizers
| 
| A	src/libshogun/kernel/AvgDiagKernelNormalizer.cpp
| A	src/libshogun/kernel/IdentityKernelNormalizer.cpp
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| A	src/libshogun/kernel/KernelNormalizer.cpp
|  
* commit 6841cec0ec38b01423ef2696e7a2c4e516a70a84
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 18:21:56 2010 +0000
| 
|     added serialization support for a few kernel normalizers
| 
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit 1de92036738c1bf3fe94a76c6cdb7cdedde5bd23
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Aug 6 12:02:37 2010 +0000
| 
|     fixed compile warning
| 
| M	src/libshogun/features/StringFeatures.cpp
|  
* commit c4982f7fcce8dac500f30f413d1ea83a041665ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 4 07:51:48 2010 +0000
| 
|     get --enable-static to work correctly again (requires libshogun/ui in in src dir) and statically links in libshogun/libshogunui
| 
| M	src/configure
| M	src/octave/OctaveInterface.cpp
|  
* commit 70ddf7013ecb24a808fc03e6483c37727e833424
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 3 08:22:37 2010 +0000
| 
|     check nu only for certain scatter types
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 14884dcddc8f521f47033d7273cf7bd36a0bc12c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 2 07:02:05 2010 +0000
| 
|     -modular support for spectrummismatchrbfkernel - based on a patch from Rob Patro
| 
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| M	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/modular/Kernel.i
|  
* commit 76dabcee917830557fa054eb49a9b093a2808e64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 2 06:43:15 2010 +0000
| 
|     wip commit on lbppyr features`
| 
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
|  
* commit 07c3a30b85b72388b3d6f2b7503d5cc243cee7e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 20 22:14:36 2010 +0000
| 
|     some examples to set position weights etc
| 
| M	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| M	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
|  
* commit d19e23fb93e2d14ed04d3ca9c15c74a65db985e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 19 08:07:28 2010 +0000
| 
|     update copyright
| 
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit 9d9349a810c0b83f9d39bde506b407eac6d66e92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 21:32:40 2010 +0000
| 
|     whitespace cleanups
| 
| M	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
|  
* commit 84b17ee37d8bd626bcfe309b259fbebf7218b4c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:51:25 2010 +0000
| 
|     add support for SpectrumMismatchRBFKernel for modular interfaces
| 
| M	src/modular/Kernel.i
|  
* commit 4feb3c49dd45b2b46df3899f6565855cdde49508
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:46:07 2010 +0000
| 
|     integrate patch from Gorden Jemwa adding ZeroMeanCenterKernelNormalizer
| 
| M	src/libshogun/features/LBPPyrDotFeatures.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/ZeroMeanCenterKernelNormalizer.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Kernel.i
| M	src/modular/SGBase.i
|  
* commit 7e7656767e556eb0edd0c624e7743a0cee7d85b1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:43:34 2010 +0000
| 
|     compile fix when reference counting is disabled
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
|  
* commit 5d0f03ab0d9f5223036022f098450beaf14d710b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 20:42:25 2010 +0000
| 
|     improve error msg
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit 6eb6baec982f5656ab90edb84d9376c00e6aa9d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 15 14:48:22 2010 +0000
| 
|     give a bit more useful error msg
| 
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
|  
* commit e9abfa4b5352c7ade90e5e02c617e8b56da2d72e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 20:46:37 2010 +0000
| 
|     fix remaining classifier r_modular examples
| 
| M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| M	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| M	examples/undocumented/r_modular/classifier_knn_modular.R
| M	examples/undocumented/r_modular/classifier_liblinear_modular.R
| M	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| M	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| M	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| M	examples/undocumented/r_modular/classifier_perceptron_modular.R
| M	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| M	examples/undocumented/r_modular/classifier_svmlight_modular.R
| M	examples/undocumented/r_modular/classifier_svmlin_modular.R
| M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
|  
* commit 45a7ce5903cc88564e12a6373c3b5d7f4c8e2f93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 20:24:09 2010 +0000
| 
|     get a number of the modular examples back to work with the transposed ascii files
|     
|     the r_modular interface will only work when configured with
|     
|     ./configure --disable-reference-counting --prefix=/usr/local/stow/shogun-0.9.4 --interfaces=libshogun,r_modular
|     
|     (leaking memory) for now.
| 
| M	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| M	examples/undocumented/r_modular/classifier_svmocas_modular.R
| M	examples/undocumented/r_modular/distribution_histogram_modular.R
| M	examples/undocumented/r_modular/distribution_hmm_modular.R
| M	examples/undocumented/r_modular/distribution_linearhmm_modular.R
| M	examples/undocumented/r_modular/kernel_chi2_modular.R
| M	examples/undocumented/r_modular/kernel_combined_modular.R
| M	examples/undocumented/r_modular/kernel_comm_word_string_modular.R
| M	examples/undocumented/r_modular/kernel_distance_modular.R
| M	examples/undocumented/r_modular/kernel_gaussian_modular.R
| M	examples/undocumented/r_modular/kernel_gaussian_shift_modular.R
| M	examples/undocumented/r_modular/kernel_linear_modular.R
| M	examples/undocumented/r_modular/kernel_poly_modular.R
| M	examples/undocumented/r_modular/kernel_sigmoid_modular.R
| M	examples/undocumented/r_modular/kernel_sparsegaussian_modular.R
| M	examples/undocumented/r_modular/kernel_sparselinear_modular.R
| M	examples/undocumented/r_modular/kernel_sparsepoly_modular.R
| M	examples/undocumented/r_modular/kernel_weighted_comm_word_string_modular.R
| M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| M	examples/undocumented/r_modular/preproc_logplusone_modular.R
| M	examples/undocumented/r_modular/preproc_normone_modular.R
|  
* commit 803b3474b45736e8b00195cab3e436abddfdce07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 12:24:19 2010 +0000
| 
|     potentially fix a corner case when the cutting plane is the null vector
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit ddfb5d255ffedc268f7ffa30271e8ea5fd0a6625
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 13 08:35:33 2010 +0000
| 
|     add a check to linear kernel to print an error when more than 5 parameters are passed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 4b78753f96700c94fa201f52bb600f0830344588
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:52:54 2010 +0000
| 
|     be more tolerant when data is 'transposed', i.e. accept column and row vectors as vectors
| 
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 12bd670736999f947ab0f2aa55bf208f3ce0864c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:52:10 2010 +0000
| 
|     improve error message
| 
| M	src/libshogun/regression/KRR.cpp
|  
* commit 4fc74a3eb78703856225d98024833fd2514016e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:51:35 2010 +0000
| 
|     include swig_typemaps before including io to get FILE* wrapped (fro python file's)
| 
| M	src/modular/SGBase.i
| M	src/python_modular/swig_typemaps.i
|  
* commit 7f1fd5c682bba1eab5d7a702c63febf20b00ec33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 7 07:50:56 2010 +0000
| 
|     fix linecount target
| 
| M	src/Makefile
|  
* commit 7cdd6d24f7cb9ee82c0a5358780fddde5611a840
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 22 09:20:42 2010 +0000
| 
|     fix a number of signed / unsigned mismatches and start to integrate lbp pyr features
| 
| M	src/libshogun/classifier/svm/libqp_splx.cpp
| A	src/libshogun/features/LBPPyrDotFeatures.cpp
| A	src/libshogun/features/LBPPyrDotFeatures.h
| M	src/modular/Features.i
|  
* commit 8f8588724ed00bb637cdc863befb81b51b1cbec2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 20 22:49:58 2010 +0000
| 
|     merge in libocas version 0.93
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| A	src/libshogun/classifier/svm/libqp.h
| A	src/libshogun/classifier/svm/libqp_splx.cpp
| D	src/libshogun/classifier/svm/qpssvmlib.cpp
| D	src/libshogun/classifier/svm/qpssvmlib.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit d2b3f72f5f2ad9e0cca78923d850a1366a53683a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 20 19:58:31 2010 +0000
| 
|     copy custom distance from custom kernel
| 
| A	src/libshogun/distance/CustomDistance.cpp
| A	src/libshogun/distance/CustomDistance.h
| M	src/libshogun/distance/Distance.h
| M	src/modular/Distance.i
|  
* commit 43f290d778e1a257489f0c3425cf13f66844848a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 19 22:04:14 2010 +0000
| 
|     hopefully fix testing in scatter svm
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
|  
* commit 4cc887652327215a37c322177e20178cae792177
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 18 20:58:53 2010 +0000
| 
|     potentially fix crasher in svmocas (reported by yaroslav)
| 
| M	src/libshogun/classifier/svm/SVMOcas.cpp
|  
* commit 06e8f796c6d2031f7a2df5c33ea5927c5795d0c4
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jun 18 12:58:28 2010 +0000
| 
|     added method to get kernel col/row
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit a9ea5111b7c4b5a6fc3cbc55e1dffaed6cf9dbfb
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jun 18 11:05:47 2010 +0000
| 
|     added kernel-based distance
| 
| A	src/libshogun/distance/KernelDistance.cpp
| A	src/libshogun/distance/KernelDistance.h
| M	src/modular/Distance.i
|  
* commit 3bb85abc56ca80d46016eb4410cd0e6708d3e6b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 18 10:04:18 2010 +0000
| 
|     integrate variance kernel normalizer into swig
| 
| M	src/modular/Kernel.i
|  
* commit 18318bb23c700846ae96f1ca1f38961a100e53e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 14:47:05 2010 +0000
| 
|     a couple of fixes related to testing
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
|  
* commit 088b90884f39f8ee26a615878f69c56f46b8bb19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 10:26:48 2010 +0000
| 
|     several SVMlight related compile fixes
| 
| M	src/configure
| M	src/libshogun/classifier/mkl/MKLClassification.cpp
| M	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/regression/svr/MKLRegression.cpp
|  
* commit 383f7f26cd39baf150377a34a7d57ee722ee0d33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 09:42:00 2010 +0000
| 
|     include config to get USE_LIGHT macro
| 
| M	src/libshogun/classifier/svm/ScatterSVM.h
|  
* commit 54d78d7624614676b4c43b81b0b2d857974ab21a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 17 09:30:10 2010 +0000
| 
|     rename SVM_light to SVMLight for consistency and introduce SVMLightOneClass (C optimization only) and let scatter svm use it
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| A	src/libshogun/classifier/svm/SVMLight.cpp
| A	src/libshogun/classifier/svm/SVMLight.h
| A	src/libshogun/classifier/svm/SVMLightOneClass.cpp
| A	src/libshogun/classifier/svm/SVMLightOneClass.h
| D	src/libshogun/classifier/svm/SVM_light.cpp
| D	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/kernel/ScatterKernelNormalizer.h
| A	src/libshogun/regression/svr/SVRLight.cpp
| A	src/libshogun/regression/svr/SVRLight.h
| D	src/libshogun/regression/svr/SVR_light.cpp
| D	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit d536f15491214b1f4b363e9cd0c84acce44bfb44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 16 09:06:11 2010 +0000
| 
|     temporarily disable two-class labeling
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit 5fd9f4d27fae668759cdbc3cbdbc136fd27427c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 15 17:11:56 2010 +0000
| 
|     testrule1/2 should work now
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 2189080bcc32154dd179d4a4b2363cc328460c26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 15 14:26:33 2010 +0000
| 
|     fix a few crashers but still crashing...
| 
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
|  
* commit 56472e6da88f2e94f4d378c0d1c203115e209caa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 14 20:29:12 2010 +0000
| 
|     untested (but compiling) code for all the new different scatter svm type
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 42caa4698ef52e73e58f45cc3ac581355b2da000
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 9 10:57:21 2010 +0000
| 
|     fix set_position_weights for wd kernel (as reported by Dave duVerle)
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 2432d7aad423657228c3b283d54090fd1394c26b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 4 14:20:09 2010 +0000
| 
|     add some minor documentation to liblinear and introduce 3 types to scatter svm
| 
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/ScatterSVM.cpp
| M	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 44be25a65e106a54e4427a2474bb5311e48b567e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 2 18:24:31 2010 +0000
| 
|     swig 2.0beta support
| 
| M	src/NEWS
| M	src/configure
|  
* commit c87ce88fa332eb5f60ac316b3bd2a3e8d1cd7ba7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:24:16 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 3f11766db0ede3ecc53b3073957e765b51b0267e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:24:02 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit d02b1e589b615cae2e48f4ce8eb50e85df4db04b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 14:15:26 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 7b83f5eb556739e96086b99fcbbc098d21e65d83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:37:32 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 98b919f00433110175d9f7c090135912db52520c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:36:42 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit b3f12cd00e095741d41d54cb38bbc64c1a64961b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:28:29 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 571e3f35c6549136de24f0d30d8ea398be4f3b46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:28:00 2010 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit bca711a2b82caeb600c61ebd2647d2766d37535c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:26:55 2010 +0000
| 
|     Preparing for new Release shogun_0.9.3
| 
| M	doc/Doxyfile
|  
* commit 9351e5fc727c380cdb1d77faee191ea786080244
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:09:58 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit c66d31c64e33d378858dbb4a99ebdde250012159
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 12:08:56 2010 +0000
| 
|     update faq about windows
| 
| M	doc/pages/FAQ.mainpage
|  
* commit 231fa7b7439f9a54ee03a51af99f665adbeed2e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 31 11:57:09 2010 +0000
| 
|     compile fixes for osx
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0fb87f0b1b444e483111b4c00bae2ea18d6f74e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 30 21:37:53 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit 0bdd7e50e215331c90a6e7599b2ed68536d955f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 30 21:05:52 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 40eab908e980d99178e1849c4144f2b56dcee511
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 28 08:47:58 2010 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 080063d0ac4edb6cd02410c22d67408a3584ef1b
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu May 27 18:52:51 2010 +0000
| 
|      MKL Multiclass: added debug output, for L1 norm check of duality gap now performed instead of weight
| 
| M	examples/undocumented/cmdline/mkl_multiclass.sg
| M	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| M	examples/undocumented/python/mkl_multiclass.py
| M	examples/undocumented/r/mkl_multiclass.R
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
|  
* commit 2681ed3750465a70437bd9dddbfa05dd30aecdac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu May 27 12:54:06 2010 +0000
| 
|     minor fix
| 
| M	src/libshogun/kernel/SpectrumRBFKernel.cpp
|  
* commit feefe60b8687d3260225422b2767fe51bb1404dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 26 21:10:50 2010 +0000
| 
|     upon vanilla make create documented/foo examples subdirectories
| 
| M	doc/Makefile
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
|  
* commit dd2ef7202bc383500ded0e686e27a0f5e98520c4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 24 08:22:11 2010 +0000
| 
|     Fusion of RBF and Spectrum kernel
| 
| A	src/libshogun/kernel/SpectrumRBFKernel.cpp
| A	src/libshogun/kernel/SpectrumRBFKernel.h
|  
* commit a5be232262270cf753346e1d35628abc0e965ffd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 20:53:02 2010 +0000
| 
|     fix minor memory leak and bug in append features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 8d31d52f92bed5be455397ae7e147a6e258d7cc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 19:30:30 2010 +0000
| 
|     fix uninited memory read in histogram normalization
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 987b5c3ed690f36b5a4a3931dba6ed7fdbf772d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 14 17:38:12 2010 +0000
| 
|     add close() to file to force close before destruction
| 
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
|  
* commit 23fd5eca65e9e998a51d5b7e99c422c7463f3182
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 12 06:12:12 2010 +0000
| 
|     enable scatter kernel from matlab interface
| 
| M	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| M	src/libshogunui/GUIKernel.cpp
|  
* commit 72389348dba7c13f7262125bce7e61edcade4649
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 10 09:17:34 2010 +0000
| 
|     add append_features function for CStringFeatures as inputs and impl. load/save for bytes
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit b5a3ed56e997af2a42f2b245e941364bf677c849
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 19:15:36 2010 +0000
| 
|     A    src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
| 
| A	src/libshogun/kernel/SpectrumMismatchRBFKernel.cpp
|  
* commit d3c68455ea195edc391213d02658da8c1042efc0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 19:13:18 2010 +0000
| 
|     missing file
| 
| M	src/configure
| A	src/libshogun/kernel/SpectrumMismatchRBFKernel.h
|  
* commit f0f15898241879f783d917f7d9597f53e2bfa139
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 17:58:49 2010 +0000
| 
|     matlab gui for WEIGHTEDDEGREERBF and SPECTRUMMISMATCHRBF
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 2d552e7128e272bfcc0ae86aef2700fd478eb20d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun May 9 17:57:48 2010 +0000
| 
|     minor changes to CWeightedDegreeRBFKernel and CKernel for WeightedDegreeRBFKernel
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeRBFKernel.h
|  
* commit bd291b5f3485ff5c05e3df809788e67b292b69cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 7 22:28:36 2010 +0000
| 
|     add function to concatenate features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 1e901943f52df856b7ff5b6c61cccd452193efc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 7 14:23:30 2010 +0000
| 
|     add functions to compute histogram/random features for it
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/Features.i
|  
* commit 13fbdb9a26d3da178208c724cce7cc2f9ac50077
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:26:15 2010 +0000
| 
|     GUIclassifier.cpp: mklnorm parameter now affects CMKLMultiClass
|     updated examples for MKL Multiclass
|     worked on PYChi2kernel
| 
| M	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| M	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
| M	examples/undocumented/r_modular/mkl_multiclass_modular.R
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 3577018b353f6783939e8c573b304ad5bee0ff8d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:01:43 2010 +0000
| 
|     added one kernel more and mkl norm
| 
| M	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
|  
* commit dd99fff1c3d60337c9cb95ae3743a02eb6a3cd9a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue May 4 16:00:06 2010 +0000
| 
|     iadded Lp norm MKL for MKL multiclass
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
| A	src/libshogun/classifier/mkl/MKLMultiClassGradient.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassGradient.h
| A	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassOptimizationBase.h
|  
* commit c567c4fd597edcb9c521e71f9a40870ee15811e0
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon May 3 16:04:05 2010 +0000
| 
|     updated documentation
| 
| M	src/libshogun/kernel/PyramidChi2.h
|  
* commit 125720b1a12655a4a5645a6a3a524ca8dfe11ad2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon May 3 10:16:47 2010 +0000
| 
|     added WDK that considers additional properties of amino acids (swig)
| 
| M	src/modular/Kernel.i
|  
* commit a0b81f5d543fbea4c2a6375c59e066d224b056d5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon May 3 10:06:55 2010 +0000
| 
|     added WDK that considers additional properties of amino acids
| 
| A	src/libshogun/kernel/WeightedDegreeRBFKernel.cpp
| A	src/libshogun/kernel/WeightedDegreeRBFKernel.h
|  
* commit 57b46c3817f40c28953d833ad4e1b4bae64e5581
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 3 09:41:27 2010 +0000
| 
|     fix sparse linear kernel's add_to_normal *sigh*
| 
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.cpp
|  
* commit e356ff5e537ddfc74c587a6eaae02b5b463efaff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 2 08:26:05 2010 +0000
| 
|     update example to show float32 support
| 
| M	examples/undocumented/python_modular/kernel_custom_modular.py
|  
* commit 5c138bf5e983a9a2b17710a9080928f3a0e37e9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 2 08:24:20 2010 +0000
| 
|     allow also floats etc as input for custom kernel
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| A	src/libshogun/lib/Parameter.cpp
| M	src/libshogun/lib/Parameter.h
| M	src/modular/Kernel.i
| M	src/python_modular/swig_typemaps.i
|  
* commit d810cb69afd8d0e608fd1994ff8ac09bce556c92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 16 11:33:44 2010 +0000
| 
|     move datatype enum into a separate file and introduce parameters with SVM C as example
| 
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| A	src/libshogun/lib/DataType.h
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/Parameter.h
|  
* commit f1c6f6d073ea486eaa2dff2d684439ad3c892c0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 15:54:12 2010 +0000
| 
|     get some r examples back to work
| 
| M	examples/undocumented/r_modular/classifier_lda_modular.R
| M	examples/undocumented/r_modular/classifier_libsvm_modular.R
|  
* commit 5dc24baf7fdbfeaa65956cf57ac3380811fda519
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 15:26:16 2010 +0000
| 
|     update link dependency generator script to work with .so as suffix and get octave/r modular interfaces back to work
| 
| M	src/.generate_link_dependencies.py
| M	src/modular/SGBase.i
| M	src/octave_modular/sg_print_functions.cpp
| M	src/r_modular/sg_print_functions.cpp
|  
* commit 8212f4e76241ffeff2330c3afbc1539649abcc61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 15 13:53:05 2010 +0000
| 
|     try to get python-dbg to work...
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 54ef7434a4d643d4dc086fa0c97c076acc8d0fb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 20:04:16 2010 +0000
| 
|     adjust .so suffix for python and apply yaroslavs patch to use distutils to figure out libs & co
| 
| M	src/NEWS
| M	src/configure
|  
* commit d3e706f192a34a37b42d222a217c5288eb75bf07
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:22 2010 +0000
| 
|     -- even more descriptions
| 
| A	examples/descriptions/modular/kernel_histogram_word_string.txt
| A	examples/descriptions/modular/kernel_io.txt
| A	examples/descriptions/modular/kernel_matchwordstring.txt
| A	examples/descriptions/modular/kernel_wordmatch.txt
|  
* commit f5bdebd8aac8bc3153ee42020cd436f24134087a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:19 2010 +0000
| 
|     -- new descriptions
| 
| A	examples/descriptions/modular/kernel_fisher.txt
| A	examples/descriptions/modular/kernel_salzberg_word_string.txt
| A	examples/descriptions/static/kernel_salzbergstring.txt
|  
* commit d48b96e158ea31640919467befc001e0f09933c8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:16 2010 +0000
| 
|     -- more renameing and more descriptions
| 
| A	examples/descriptions/modular/kernel_local_alignment_string.txt
| D	examples/descriptions/modular/kernel_localalignmentstring.txt
| A	examples/descriptions/modular/kernel_oligo_string.txt
| D	examples/descriptions/modular/kernel_oligostring.txt
| A	examples/descriptions/modular/kernel_top.txt
| A	examples/descriptions/static/kernel_top.txt
| A	examples/undocumented/octave_modular/kernel_local_alignment_string_modular.m
| D	examples/undocumented/octave_modular/kernel_localalignmentstring_modular.m
| A	examples/undocumented/octave_modular/kernel_oligo_string_modular.m
| D	examples/undocumented/octave_modular/kernel_oligostring_modular.m
| A	examples/undocumented/r_modular/kernel_local_alignment_string_modular.R
| D	examples/undocumented/r_modular/kernel_localalignmentstring_modular.R
| A	examples/undocumented/r_modular/kernel_oligo_string_modular.R
| D	examples/undocumented/r_modular/kernel_oligostring_modular.R
| A	examples/undocumented/r_modular/kernel_top_modular.R
| D	examples/undocumented/r_modular/kernel_topfisher_modular.R
|  
* commit bec06900ca973e7560c64053de7a25c209bf8b82
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:12 2010 +0000
| 
|     -- more
| 
| A	examples/descriptions/modular/kernel_simple_locality_improved_string.txt
| D	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/modular/kernel_weighted_comm_word_string.txt
| D	examples/descriptions/modular/kernel_weightedcommwordstring.txt
| A	examples/undocumented/octave_modular/kernel_simple_locality_improved_string_modular.m
| D	examples/undocumented/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighted_comm_word_string_modular.m
| D	examples/undocumented/octave_modular/kernel_weightedcommwordstring_modular.m
| A	examples/undocumented/r_modular/kernel_simple_locality_improved_string_modular.R
| D	examples/undocumented/r_modular/kernel_simplelocalityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighted_comm_word_string_modular.R
| D	examples/undocumented/r_modular/kernel_weightedcommwordstring_modular.R
|  
* commit eb401f4456e3966732174e988b4589ff7a5cc9a7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:08 2010 +0000
| 
|     -- even more
| 
| A	examples/descriptions/modular/kernel_linear_byte.txt
| A	examples/descriptions/modular/kernel_linear_word.txt
| D	examples/descriptions/modular/kernel_linearbyte.txt
| D	examples/descriptions/modular/kernel_linearword.txt
| A	examples/descriptions/modular/kernel_poly_match_word_string.txt
| A	examples/descriptions/modular/kernel_weighted_degree_position_string.txt
| D	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| A	examples/undocumented/octave_modular/kernel_linear_word_modular.m
| D	examples/undocumented/octave_modular/kernel_linearword_modular.m
| A	examples/undocumented/octave_modular/kernel_poly_match_word_string.m
| D	examples/undocumented/octave_modular/kernel_polymatchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighted_degree_position_string_modular.m
| D	examples/undocumented/octave_modular/kernel_weighteddegreepositionstring_modular.m
| A	examples/undocumented/r_modular/kernel_comm_ulong_string_modular.R
| A	examples/undocumented/r_modular/kernel_comm_word_string_modular.R
| D	examples/undocumented/r_modular/kernel_commulongstring_modular.R
| D	examples/undocumented/r_modular/kernel_commwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_fixed_degree_string_modular.R
| D	examples/undocumented/r_modular/kernel_fixeddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_gaussian_shift_modular.R
| D	examples/undocumented/r_modular/kernel_gaussianshift_modular.R
| A	examples/undocumented/r_modular/kernel_linear_byte_modular.R
| A	examples/undocumented/r_modular/kernel_linear_string_modular.R
| A	examples/undocumented/r_modular/kernel_linear_word_modular.R
| D	examples/undocumented/r_modular/kernel_linearbyte_modular.R
| D	examples/undocumented/r_modular/kernel_linearstring_modular.R
| D	examples/undocumented/r_modular/kernel_linearword_modular.R
| A	examples/undocumented/r_modular/kernel_weighted_degree_position_string_modular.R
| D	examples/undocumented/r_modular/kernel_weighteddegreepositionstring_modular.R
|  
* commit 649198995837cddb16e0cde0644bc314b641f9da
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:50:04 2010 +0000
| 
|     -- rename descriptions and some examples to make all example names
|     	within static and all within modular consistent
| 
| A	examples/descriptions/modular/kernel_comm_ulong_string.txt
| A	examples/descriptions/modular/kernel_comm_word_string.txt
| D	examples/descriptions/modular/kernel_commulongstring.txt
| D	examples/descriptions/modular/kernel_commwordstring.txt
| A	examples/descriptions/modular/kernel_fixed_degree_string.txt
| D	examples/descriptions/modular/kernel_fixeddegreestring.txt
| A	examples/descriptions/modular/kernel_gaussian_shift.txt
| D	examples/descriptions/modular/kernel_gaussianshift.txt
| D	examples/descriptions/modular/kernel_lik.txt
| A	examples/descriptions/modular/kernel_linear_string.txt
| D	examples/descriptions/modular/kernel_linearstring.txt
| A	examples/descriptions/modular/kernel_locality_improved_string.txt
| D	examples/undocumented/cmdline/kernel_sparse_linear.sg
| A	examples/undocumented/cmdline/kernel_sparselinear.sg
| A	examples/undocumented/octave_modular/kernel_comm_ulong_string_modular.m
| A	examples/undocumented/octave_modular/kernel_comm_word_string_modular.m
| D	examples/undocumented/octave_modular/kernel_commulongstring_modular.m
| D	examples/undocumented/octave_modular/kernel_commwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_fixed_degree_string_modular.m
| D	examples/undocumented/octave_modular/kernel_fixeddegreestring_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussian_shift_modular.m
| D	examples/undocumented/octave_modular/kernel_gaussianshift_modular.m
| D	examples/undocumented/octave_modular/kernel_histogram_modular.m
| A	examples/undocumented/octave_modular/kernel_histogramword_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_byte_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_string_modular.m
| D	examples/undocumented/octave_modular/kernel_linearbyte_modular.m
| D	examples/undocumented/octave_modular/kernel_linearstring_modular.m
| D	examples/undocumented/python/kernel_linear_string.py
| A	examples/undocumented/python/kernel_linearstring.py
| D	examples/undocumented/r/kernel_histogram.R
| A	examples/undocumented/r/kernel_histogramword.R
| A	examples/undocumented/r/kernel_spectrum.R
| D	examples/undocumented/r/kernel_string.R
| A	examples/undocumented/r_modular/kernel_distance_modular.R
| D	examples/undocumented/r_modular/kernel_distancetokernel_modular.R
|  
* commit 0407e4cd7fe8648eafadcb89edacb70979892c6b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:49:56 2010 +0000
| 
|     -- renamed examples to have consistent names within static interfaces
| 
| A	examples/kernel_distance.py
| A	examples/undocumented/cmdline/kernel_distance.sg
| D	examples/undocumented/cmdline/kernel_distancetokernel.sg
| D	examples/undocumented/python/kernel_distancetokernel.py
| A	examples/undocumented/r/kernel_distance.R
| D	examples/undocumented/r/kernel_distancetokernel.R
|  
* commit 71c2923bef91e4aeb5c79c29001a2e4eb538b64c
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 14 16:49:51 2010 +0000
| 
|     -- example descriptions for structure/DynProg
| 
| A	examples/descriptions/modular/structure_dynprog.txt
| A	examples/descriptions/static/structure_dynprog.txt
|  
* commit 01f2b402f3b0b619f55451c13fdb999b570824da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 14:47:13 2010 +0000
| 
|     document remaining missing examples for dot features
| 
| A	examples/descriptions/static/features_dot_polynomial.txt
| A	examples/descriptions/static/features_dot_wdfeatures.txt
| A	examples/descriptions/static/features_dot_weightedspec.txt
|  
* commit d36cd3487092a163a1165fed0bffafdee2110fa8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 14:40:33 2010 +0000
| 
|     some more documentation for strings
| 
| A	examples/descriptions/modular/features_io.txt
| A	examples/descriptions/modular/features_snp.txt
| A	examples/descriptions/modular/features_string_hashed_wd.txt
| A	examples/descriptions/static/features_string.txt
| M	examples/undocumented/matlab_and_octave/features_string.m
| A	examples/undocumented/python_modular/features_string_hashed_wd_modular.py
| D	examples/undocumented/python_modular/hashed_wd_features_modular.py
|  
* commit caf808e5ef98d2ba52288c00fa535da208ccfbec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 13:42:52 2010 +0000
| 
|     slightly improve documentation remove duplicate examples (they are already in kernel_comm*)
| 
| M	examples/descriptions/modular/kernel_commwordstring.txt
| M	examples/descriptions/static/kernel_commwordstring.txt
| D	examples/undocumented/octave_modular/preproc_commulongstring_modular.m
| D	examples/undocumented/octave_modular/preproc_commwordstring_modular.m
| D	examples/undocumented/r_modular/preproc_commulongstring_modular.R
| D	examples/undocumented/r_modular/preproc_commwordstring_modular.R
|  
* commit e177d88560e874106ea15e60c3f6620403b70fa2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 13:29:47 2010 +0000
| 
|     add some missing example documentation
| 
| D	examples/descriptions/modular/distribution_linear_hmm.txt
| A	examples/descriptions/modular/distribution_linearhmm.txt
| A	examples/descriptions/static/distribution_linearhmm.txt
| A	examples/descriptions/static/distribution_markovchain.txt
| D	examples/undocumented/python_modular/distribution_linear_hmm_modular.py
| A	examples/undocumented/python_modular/distribution_linearhmm_modular.py
|  
* commit 0a8aa48c6b2cd6738026d35e36b6300be3b91ad5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 14 07:11:45 2010 +0000
| 
|     apply patch from Amir Saffari to add label confidences
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/modular/Features.i
|  
* commit 9dec8a430e76d0ee6e825142483254078426ce49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 12 16:00:38 2010 +0000
| 
|     fix race condition in perf measures
| 
| M	src/NEWS
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
|  
* commit 9193329686db78f84d719d044d4c12e4a9340db8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 12 13:46:23 2010 +0000
| 
|     update for 0.9.3
| 
| M	src/NEWS
|  
* commit 2551f5a6e280db5cabd0ac14a23600b00ea6559a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 5 13:18:25 2010 +0000
| 
|     really fix static libshogunui linking problem
| 
| M	src/configure
|  
* commit aa423be1467de0a4269c95a280354827a9db257a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 5 13:13:03 2010 +0000
| 
|     fix static linking of libshogunui
| 
| M	src/configure
|  
* commit 98e980181613f5343f798804f09d3b8a45712021
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 19:54:20 2010 +0000
| 
|     make -> $(MAKE)
| 
| M	Makefile
|  
* commit ea2c7c8c3b6e102690219912672c4be36f624ea4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 08:56:38 2010 +0000
| 
|     fix example path
| 
| M	doc/Doxyfile
|  
* commit 816e78a1dc06a921704fe6abd9093c985402b334
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 31 08:50:41 2010 +0000
| 
|     include configure --help and INSTALLATION text in Installation help on the web
| 
| M	doc/Doxyfile
| M	doc/Makefile
| M	doc/pages/Installation.mainpage
|  
* commit 3a7e41710bc83b3b1b33ac2b9b23b8762be9a4d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:36:16 2010 +0000
| 
|     fix update-webpage
| 
| M	Makefile
|  
* commit 0d4316d412e45bfba2f40accf07c5324242a4058
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:17:48 2010 +0000
| 
|     Preparing for new Release shogun_0.9.2
| 
| M	doc/Doxyfile
|  
* commit 006068396b3a35d1fa80aec99c6504e30eb5cbe6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 22:14:44 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 1b8b1e219cc865b39dc67c0c962c9e47f7f6b492
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:59:48 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b716e01ec86bacfdf981f0c7a2a11efcec530998
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:56:55 2010 +0000
| 
|     - many further documentation improvements
|     - fix installation of libshogun examples
| 
| M	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
| M	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	examples/generate_documented.sh
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/Hash.h
|  
* commit c77a3f95fe87f70c2033e7c5b7b6b08a5c9989e5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Mar 30 21:43:48 2010 +0000
| 
|     Documented a few more examples.
| 
| A	examples/descriptions/modular/kernel_auc.txt
| A	examples/descriptions/modular/kernel_sparse_gaussian.txt
| A	examples/descriptions/modular/kernel_sparse_linear.txt
| A	examples/descriptions/modular/kernel_sparse_poly.txt
|  
* commit e8c33fd9af06ae8672b7f70fb78e93453770ebef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:24:02 2010 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/insert_examples.py
| M	doc/insert_examples_cn.py
| M	doc/pages/ExamplesModularR.mainpage
|  
* commit 016b2272cc71350e50b6887209dfa5d8e00829ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:07:46 2010 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 4b49b8497e0eb378da64c3ff989b9e682f4b5e35
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 21:06:48 2010 +0000
| 
|     more documentation
| 
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit ea2e94723dc093fd4ca04da1932b4342fcb99be9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 18:58:24 2010 +0000
| 
|     add a gazillion of docstrings
| 
| M	src/.version.sh
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/KernelNormalizer.h
|  
* commit 9c018e3f877e3c056cfa386711ff4e0fbe73c752
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Mar 30 17:32:49 2010 +0000
| 
|     added a few missing descriptions
| 
| A	examples/descriptions/modular/distance_canberraword.txt
| A	examples/descriptions/modular/distance_hammingword.txt
| A	examples/descriptions/modular/distance_manhatten.txt
| A	examples/descriptions/modular/distance_manhattenword.txt
| A	examples/descriptions/modular/distance_sparseeuclidian.txt
| A	examples/descriptions/modular/kernel_weighted_degree_string.txt
| A	examples/descriptions/modular/serialization_svmlight.txt
|  
* commit 0ed0ddd4c632de8a9425d57f7f562bddd29e4986
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 17:04:46 2010 +0000
| 
|     workaround a compile failure on osx
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/features/StringFeatures.h
|  
* commit be7a220d9dc3dee61c687a3bd8fd70076fc2a67a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 15:18:47 2010 +0000
| 
|     tests run through finally
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 1c1e4b716c2408ce2a41f834c4bccd2306d1f8bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:53:58 2010 +0000
| 
|     don't kill default paths
| 
| M	src/Makefile.template
|  
* commit 03e9109b75e84aeb8461b55f721635a77a204ae2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:52:06 2010 +0000
| 
|     fix liblinear testsuite errors
| 
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/python_modular/classifier.py
|  
* commit a20d4e1cc5ab5d2919701ef80c18d97e128b231f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 14:36:29 2010 +0000
| 
|     cleanup out.txt
| 
| M	examples/Makefile
| M	examples/generate_documented.sh
| M	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| M	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| M	examples/undocumented/cmdline/classifier_knn.sg
| M	examples/undocumented/cmdline/classifier_lda.sg
| M	examples/undocumented/cmdline/classifier_liblinear.sg
| M	examples/undocumented/cmdline/classifier_libsvm.sg
| M	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| M	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| D	examples/undocumented/cmdline/classifier_mpd.sg
| A	examples/undocumented/cmdline/classifier_mpdsvm.sg
| M	examples/undocumented/cmdline/classifier_perceptron.sg
| M	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| M	examples/undocumented/cmdline/classifier_svmlight.sg
| M	examples/undocumented/cmdline/classifier_svmlin.sg
| M	examples/undocumented/cmdline/classifier_svmocas.sg
| M	examples/undocumented/cmdline/classifier_svmsgd.sg
| M	examples/undocumented/cmdline/mkl_multiclass.sg
| M	examples/undocumented/cmdline/regression_krr.sg
| M	examples/undocumented/cmdline/regression_libsvr.sg
| M	examples/undocumented/cmdline/regression_svrlight.sg
|  
* commit 7adedbfb51d5754084dbdb8981f16bb3030ceae8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:34:37 2010 +0000
| 
|     -- minor changes in descriptions
| 
| M	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| M	examples/descriptions/modular/kernel_weighteddegreestring.txt
| M	examples/descriptions/static/kernel_weighteddegreepositionstring.txt
| M	examples/descriptions/static/kernel_weighteddegreestring.txt
|  
* commit 99f6b10134b21338fbb50a50dacbe914200f5ca3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:27:00 2010 +0000
| 
|     -- some changes to descriptions
| 
| M	examples/descriptions/modular/kernel_custom.txt
| M	examples/descriptions/modular/kernel_distance.txt
| M	examples/descriptions/modular/kernel_poly.txt
| M	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| M	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
|  
* commit 2f3f7f5b6c01b34fcde3bc8803bcf487420a85a3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:26:56 2010 +0000
| 
|     -- descriptions for modular interface
| 
| A	examples/descriptions/modular/kernel_chi2.txt
| A	examples/descriptions/modular/kernel_combined.txt
| A	examples/descriptions/modular/kernel_commulongstring.txt
| A	examples/descriptions/modular/kernel_commwordstring.txt
| A	examples/descriptions/modular/kernel_const.txt
| A	examples/descriptions/modular/kernel_custom.txt
| A	examples/descriptions/modular/kernel_diag.txt
| A	examples/descriptions/modular/kernel_distance.txt
| A	examples/descriptions/modular/kernel_fixeddegreestring.txt
| A	examples/descriptions/modular/kernel_gaussian.txt
| A	examples/descriptions/modular/kernel_gaussianshift.txt
| A	examples/descriptions/modular/kernel_histogramword.txt
| A	examples/descriptions/modular/kernel_lik.txt
| A	examples/descriptions/modular/kernel_linear.txt
| A	examples/descriptions/modular/kernel_linearbyte.txt
| A	examples/descriptions/modular/kernel_linearstring.txt
| A	examples/descriptions/modular/kernel_linearword.txt
| A	examples/descriptions/modular/kernel_localalignmentstring.txt
| A	examples/descriptions/modular/kernel_localityimprovedstring.txt
| A	examples/descriptions/modular/kernel_oligostring.txt
| A	examples/descriptions/modular/kernel_poly.txt
| A	examples/descriptions/modular/kernel_polymatchstring.txt
| A	examples/descriptions/modular/kernel_polymatchword.txt
| A	examples/descriptions/modular/kernel_sigmoid.txt
| A	examples/descriptions/modular/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/modular/kernel_sparsegaussian.txt
| A	examples/descriptions/modular/kernel_sparselinear.txt
| A	examples/descriptions/modular/kernel_sparsepoly.txt
| A	examples/descriptions/modular/kernel_spectrum.txt
| A	examples/descriptions/modular/kernel_weighted_spec.txt
| A	examples/descriptions/modular/kernel_weightedcommwordstring.txt
| A	examples/descriptions/modular/kernel_weighteddegreepositionstring.txt
| A	examples/descriptions/modular/kernel_weighteddegreestring.txt
|  
* commit 99a9334aa99160e39f1fc773dd9e3ec67cedaaee
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 14:03:28 2010 +0000
| 
|     -- missing static desctiptions
| 
| A	examples/descriptions/static/kernel_lik.txt
| A	examples/descriptions/static/kernel_weighted_spec.txt
| A	examples/descriptions/static/kernel_weightedcommwordstring.txt
| A	examples/descriptions/static/kernel_weighteddegreepositionstring.txt
| A	examples/descriptions/static/kernel_weighteddegreestring.txt
|  
* commit 4dccc547d9590867d59b3eb439b67e9ad2972939
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 30 13:45:46 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernel_fixeddegreestring.txt
| A	examples/descriptions/static/kernel_gaussian.txt
| A	examples/descriptions/static/kernel_gaussianshift.txt
| A	examples/descriptions/static/kernel_histogramword.txt
| A	examples/descriptions/static/kernel_sigmoid.txt
| A	examples/descriptions/static/kernel_simplelocalityimprovedstring.txt
| A	examples/descriptions/static/kernel_sparsegaussian.txt
| A	examples/descriptions/static/kernel_sparselinear.txt
| A	examples/descriptions/static/kernel_sparsepoly.txt
| A	examples/descriptions/static/kernel_spectrum.txt
|  
* commit 064c33b5c2aad53edbb553bcd33292f1a59c6714
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:26:56 2010 +0000
| 
|     don't transpose ascii (really really don't) and remove debug code from hdf5
| 
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 7e5ffb335a65047d6e9f00c9b4b473a68828afbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:25:55 2010 +0000
| 
|     add examples on how to r/w hdf5 files
| 
| M	examples/undocumented/python_modular/features_io_modular.py
| M	examples/undocumented/python_modular/kernel_io_modular.py
|  
* commit a9706b7c98db4829581f37118075066ba24bf864
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 13:10:23 2010 +0000
| 
|     clean up after example
| 
| M	examples/undocumented/python_modular/features_string_char_compressed_modular.py
|  
* commit 1a2ef1bc6fa9892f2954b7e3ce90f2958bc36db0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:59:31 2010 +0000
| 
|     fix misnamings
| 
| A	examples/descriptions/modular/classifier_domainadaptationsvm.txt
| D	examples/descriptions/modular/classifier_domainadaptationsvm_modular.txt
| A	examples/descriptions/modular/classifier_svmlight_linear_term.txt
| D	examples/descriptions/modular/classifier_svmlight_linear_term_modular.txt
| A	examples/descriptions/modular/distance_braycurtis.txt
| D	examples/descriptions/modular/distance_braycurtis_modular.txt
| A	examples/descriptions/modular/distance_canberra.txt
| D	examples/descriptions/modular/distance_canberra_modular.txt
| A	examples/descriptions/modular/distance_chebyshew.txt
| D	examples/descriptions/modular/distance_chebyshew_modular.txt
| A	examples/descriptions/modular/distance_chisquare.txt
| D	examples/descriptions/modular/distance_chisquare_modular.txt
| A	examples/descriptions/modular/distance_cosine.txt
| D	examples/descriptions/modular/distance_cosine_modular.txt
| A	examples/descriptions/modular/distance_euclidian.txt
| D	examples/descriptions/modular/distance_euclidian_modular.txt
| A	examples/descriptions/modular/distance_geodesic.txt
| D	examples/descriptions/modular/distance_geodesic_modular.txt
| A	examples/descriptions/modular/distance_jensen.txt
| D	examples/descriptions/modular/distance_jensen_modular.txt
| A	examples/descriptions/modular/distance_minkowski.txt
| D	examples/descriptions/modular/distance_minkowski_modular.txt
| A	examples/descriptions/modular/distance_tanimoto.txt
| D	examples/descriptions/modular/distance_tanimoto_modular.txt
|  
* commit c3b91534e363c5fed14078fca0016e4ae7c176ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:30:18 2010 +0000
| 
|     shogun octave-modular works reliably until one exits octave. however octave
|     crashes upon exit. disable octave modular by default until swig/octave fix the
|     crasher when *unloading* modules.
| 
| M	src/NEWS
| M	src/configure
|  
* commit a9d5f2353bce6c867784f604cc82fc29c9abb169
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 12:09:27 2010 +0000
| 
|     r/w support of hdf5 matrices/vectors
| 
| M	src/.version.sh
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit 1cbd13e9a391dbea6689006f56431ee5118af616
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 10:51:52 2010 +0000
| 
|     set LD_LIBRARY_PATH w/ matlab
| 
| M	src/Makefile.template
|  
* commit b98fd17e882e5f516f047511fb268e510c4a1f70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 10:42:16 2010 +0000
| 
|     prepend LD_LIBRARY_PATH
| 
| M	examples/undocumented/libshogun/Makefile
|  
* commit 3616da382610fe714e8de67f8f4464049613f01f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 30 05:50:38 2010 +0000
| 
|     hdf5 vector and matrix read support plus proper error handling
| 
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit 7c8dc10226d40630716be6e5173c96629b0fdc63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 15:53:58 2010 +0000
| 
|     non-standard boolean type detection, print function for ulong vectors
| 
| M	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
| M	src/libshogun/lib/Mathematics.cpp
|  
* commit 93161c06c9a60b81b45bac59f2a143132e9aaacb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 13:45:19 2010 +0000
| 
|     drafty hdf5 read support for vectors
| 
| M	src/NEWS
| M	src/libshogun/lib/HDF5File.cpp
|  
* commit 7bc715127b34f0fa0a1de3841532aee50a4839d8
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:44:42 2010 +0000
| 
|     additional boost::serialization code
| 
| M	src/libshogun/lib/common.h
|  
* commit 10a662951029ecdeded285bf8cabfa118bf48367
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:38:00 2010 +0000
| 
|     added MultitaskKernelMaskPairNormalizer
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/MultitaskKernelMaskPairNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 240b884967a967d5e47c0071091cac4d1040f960
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:33:17 2010 +0000
| 
|     added optional train factor
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit b9d4c570d665fa6581c1b10112acc0c48c9a14be
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:31:36 2010 +0000
| 
|     fixed minor bug
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
|  
* commit f22f0771c343efdfe9aeaacd5b49da35f6c74e30
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:29:49 2010 +0000
| 
|     further work on serialization code
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.cpp
|  
* commit 3034ddf6b33ec8504c02cb68df983c795f493664
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 29 13:27:21 2010 +0000
| 
|     completed documentation for multitask mkl code
| 
| M	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 5272112196b7ffd7fb84f82e57ab9c0c24492a6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 10:04:23 2010 +0000
| 
|     start integration of hdf5 file support
| 
| M	src/configure
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/HDF5File.cpp
| M	src/libshogun/lib/HDF5File.h
|  
* commit a6c133d6e6472aa0f4be4c65d455acb4859aa726
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 08:32:29 2010 +0000
| 
|     load/write of sparse features of arbitrary type
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
|  
* commit 52992ee1d3a06b5ff93ed3d2065a3e8c28ccabb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 08:32:09 2010 +0000
| 
|     show how sparse features can be read/written
| 
| M	examples/undocumented/python_modular/features_io_modular.py
|  
* commit 5a236327749e6904fdf15297a430aecd04f5447d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 29 06:32:35 2010 +0000
| 
|     show ascii loading
| 
| M	examples/undocumented/python_modular/features_io_modular.py
|  
* commit b85d970d887026aa15b59679a5ae2fcac6948d29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 21:48:14 2010 +0000
| 
|     support loading/writing of labels
| 
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit abc78634186b3ebd150b51e22922524800c12778
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 21:48:00 2010 +0000
| 
|     add examples on how to load kernel/labels/features
| 
| A	examples/undocumented/python_modular/features_io_modular.py
| A	examples/undocumented/python_modular/kernel_io_modular.py
|  
* commit bc62dda1b4aae22b67d0d77d3f72b67dd486a3f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 28 20:52:34 2010 +0000
| 
|     set/get functions for vectors/strings
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/File.h
|  
* commit bc9487b4c107541d877b46c8e704833b8380b257
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 27 20:57:09 2010 +0000
| 
|     implement binary vector GET function
| 
| M	src/libshogun/lib/BinaryFile.cpp
|  
* commit 93bfd88a0270f9ae88b8e03e3ac6f0f761ea8baa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 21:07:58 2010 +0000
| 
|     support for basic reading/writing of binary matrices
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.h
|  
* commit abbc4f2695ae95c28bd43f705e27b088f79826e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 14:58:53 2010 +0000
| 
|     template for binary i/o
| 
| M	src/libshogun/lib/BinaryFile.cpp
| M	src/libshogun/lib/BinaryFile.h
| M	src/modular/Library.i
|  
* commit e332fc97a336b8b0a8a46480c520fbcf1c2cddfe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 13:00:26 2010 +0000
| 
|     ascii file i/o seems to work now
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/modular/Library.i
|  
* commit 020122193bf52c7d520115ab682d846b53b40b87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:10:57 2010 +0000
| 
|     modify tests to use liblinear defaults
| 
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/octave_modular/classifier.m
| M	testsuite/python_modular/classifier.py
| M	testsuite/r_modular/classifier.R
|  
* commit 4ac1f12b80866ec69b8d37dc5f5888e7b9150d93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:09:28 2010 +0000
| 
|     transpose labels too
| 
| M	data/label_train_dna.dat
| M	data/label_train_dna42.dat
| M	data/label_train_multiclass.dat
| M	data/label_train_twoclass.dat
|  
* commit 052bae6bd73effb0ded2356aa61e17655441a0f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:09:18 2010 +0000
| 
|     fix examples to work with transposed data
| 
| M	examples/undocumented/matlab_and_octave/tools/load_matrix.m
| D	examples/undocumented/matlab_and_octave/tools/read_feature_matrix.m
| M	examples/undocumented/r/classifier_gmnpsvm.R
| M	examples/undocumented/r/classifier_gpbtsvm.R
| M	examples/undocumented/r/classifier_knn.R
| M	examples/undocumented/r/classifier_lda.R
| M	examples/undocumented/r/classifier_libsvm.R
| M	examples/undocumented/r/classifier_libsvmmulticlass.R
| M	examples/undocumented/r/classifier_libsvmoneclass.R
| M	examples/undocumented/r/classifier_mpdsvm.R
| M	examples/undocumented/r/clustering_hierarchical.R
| M	examples/undocumented/r/distance_braycurtis.R
| M	examples/undocumented/r/distance_canberra.R
| M	examples/undocumented/r/distance_chebyshew.R
| M	examples/undocumented/r/distance_chisquare.R
| M	examples/undocumented/r/distance_cosine.R
| M	examples/undocumented/r/distance_euclidian.R
| M	examples/undocumented/r/distance_geodesic.R
| M	examples/undocumented/r/distance_jensen.R
| M	examples/undocumented/r/distance_manhatten.R
| M	examples/undocumented/r/distance_minkowski.R
| M	examples/undocumented/r/distance_tanimoto.R
| M	examples/undocumented/r/kernel_chi2.R
| M	examples/undocumented/r/kernel_combined.R
| M	examples/undocumented/r/kernel_distancetokernel.R
| M	examples/undocumented/r/kernel_gaussian.R
| M	examples/undocumented/r/kernel_gaussianshift.R
| M	examples/undocumented/r/kernel_linear.R
| M	examples/undocumented/r/kernel_poly.R
| M	examples/undocumented/r/kernel_sigmoid.R
| M	examples/undocumented/r/mkl_multiclass.R
| M	examples/undocumented/r/preproc_logplusone.R
| M	examples/undocumented/r/preproc_normone.R
| M	examples/undocumented/r/regression_krr.R
| M	examples/undocumented/r/regression_libsvr.R
|  
* commit a62988148fde6fd5496ebdcad666cc4952c9e8a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 11:08:33 2010 +0000
| 
|     fix erraneous close when file is not opened and warnings caused by wrong fprintf format strings
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/AsciiFile.cpp
|  
* commit c6c67300b6e774c14695eb1791af4f106432f7fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 10:05:38 2010 +0000
| 
|     all features read from ascii files are transposed now (one example == one line): so change examples accordingly
| 
| M	data/fm_test_byte.dat
| A	data/fm_test_byte_transposed.dat
| M	data/fm_test_real.dat
| A	data/fm_test_real_transposed.dat
| M	data/fm_test_word.dat
| A	data/fm_test_word_transposed.dat
| M	data/fm_train_byte.dat
| A	data/fm_train_byte_transposed.dat
| M	data/fm_train_real.dat
| A	data/fm_train_real_transposed.dat
| M	data/fm_train_word.dat
| A	data/fm_train_word_transposed.dat
| M	src/libshogun/lib/AsciiFile.h
|  
* commit 24e4463a6abd473dfa5e0d57897f361a13fbd877
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 26 09:52:15 2010 +0000
| 
|     consolidate i/o functions
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
| M	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit ed1246d10b235d1d7ed547cd39ba9ef1bfc46f68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 25 19:37:40 2010 +0000
| 
|     implement loading of dense matrices
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/lib/AsciiFile.cpp
| M	src/libshogun/lib/AsciiFile.h
|  
* commit 1ba833331cf63ceaab95fee215268ca95ec27bdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 25 16:59:15 2010 +0000
| 
|     inital (dysfunctional) commit starting to use the generalized access functions in CFile
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/lib/AsciiFile.cpp
| A	src/libshogun/lib/AsciiFile.h
| A	src/libshogun/lib/BinaryFile.cpp
| A	src/libshogun/lib/BinaryFile.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| A	src/libshogun/lib/HDF5File.h
| A	src/libshogun/lib/LibSVMFile.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit e0774953597fce46c144534478eebbf560357189
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 22 16:33:32 2010 +0000
| 
|     poly kernel was correct / fixes brown paper back commit
| 
| M	src/libshogun/kernel/PolyKernel.cpp
|  
* commit ad4a72b0b788c88d742641d79070cb3dc8a5ba6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 22:52:51 2010 +0000
| 
|     add function to retrieve tube epsilon
| 
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit a82139f878573277e95b5ddeb8e39c1ef7937bf9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 22:42:40 2010 +0000
| 
|     minor whitespace cleanup & init kernel normalizer when features are already available
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
|  
* commit b9366fd7b85b442faa97df68b2dded00cc253a9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 12:19:48 2010 +0000
| 
|     - add error handling on load_ascii_file
|     - add SNP alphabet
|     - require SNP alphabet in SNP features
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
|  
* commit e16aae7053c222dfc5858f96575e61db71e97a2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 19 10:49:58 2010 +0000
| 
|     add snp feature exampel
| 
| A	examples/undocumented/python_modular/features_snp_modular.py
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/SNPFeatures.cpp
| M	src/libshogun/features/SNPFeatures.h
|  
* commit aaee3e088b011014ae2fa0e80c6a08b637685e31
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 19:51:57 2010 +0000
| 
|     start implementing SNP features
| 
| A	src/libshogun/features/SNPFeatures.cpp
| A	src/libshogun/features/SNPFeatures.h
| M	src/libshogun/kernel/SNPStringKernel.h
| M	src/modular/Features.i
|  
* commit df99b7ad8236ba81ff962736d1ed4d45aa6ef210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 15:42:41 2010 +0000
| 
|     include RAWDIGITS etc alphabets and generalize load_dna_file to load_ascii_file in stringfreatures
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 95861de954fbeebbe134200bdf646f5487fd0ffa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 15:34:44 2010 +0000
| 
|     split up svn-tag-release as suggested by Yaroslav
| 
| M	Makefile
|  
* commit 400672b5fd0f48407eb5190b0b43534c9aebd116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 13:00:10 2010 +0000
| 
|     add DIGIT and DIGIT2 alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/kernel/PolyMatchStringKernel.h
|  
* commit 76f45619e1a5b8def8be7a691f62a30aa971190d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 18 05:03:11 2010 +0000
| 
|     apply patch from Yaroslav Halchenko that adds versions when building within a git-svn tracked source
| 
| M	src/.version.sh
|  
* commit 8c322abdcda718caaa2f5b69f68dbb1d045a50ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 17 09:44:23 2010 +0000
| 
|     integrate hagens gaussian match str kernel
| 
| A	src/libshogun/kernel/GaussianMatchStringKernel.cpp
| A	src/libshogun/kernel/GaussianMatchStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/modular/Kernel.i
|  
* commit c6dd183e8f66535eea9be682c90768cf927f4de6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 17 09:38:42 2010 +0000
| 
|     fix use of combined weight
| 
| M	src/libshogun/features/CombinedDotFeatures.h
|  
* commit 31b1e71e6aafc56f6f35b964b1033b1946b50de9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 11 16:02:03 2010 +0000
| 
|     fix bug in poly kernel when inhomog. kernel was used
| 
| M	src/libshogun/kernel/PolyKernel.cpp
|  
* commit 4cb94b142931323ec4ee89f541224351c71abc42
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Mar 11 10:47:46 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernel_diag.txt
| A	examples/descriptions/static/kernel_distance.txt
|  
* commit 268af93293cf285cad7a38f03deb734605a281c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 10 18:51:48 2010 +0000
| 
|     show how to get/set subkernel weights
| 
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
|  
* commit 1ce22ffa4490c4c4fed962bb2c745c46bb91c80b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 10 17:52:31 2010 +0000
| 
|     - fix a crasher in LaRank
|     - fix set_subkernel_weights
| 
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/modular/Kernel.i
|  
* commit 2126b3370c8b38c86e461742d47177349be557b6
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Mar 5 21:47:30 2010 +0000
| 
|     added description for modular distance examples 'REAL'
| 
| A	examples/descriptions/modular/distance_braycurtis_modular.txt
| A	examples/descriptions/modular/distance_canberra_modular.txt
| A	examples/descriptions/modular/distance_chebyshew_modular.txt
| A	examples/descriptions/modular/distance_chisquare_modular.txt
| A	examples/descriptions/modular/distance_cosine_modular.txt
| A	examples/descriptions/modular/distance_euclidian_modular.txt
| A	examples/descriptions/modular/distance_geodesic_modular.txt
| A	examples/descriptions/modular/distance_jensen_modular.txt
| A	examples/descriptions/modular/distance_minkowski_modular.txt
| A	examples/descriptions/modular/distance_tanimoto_modular.txt
|  
* commit e2d6de632e088587ce585cc38f35d36804998436
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Mar 5 15:53:35 2010 +0000
| 
|     minor fixes
| 
| M	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| M	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
|  
* commit 6bb345144a33bf47beccd5e31f0eb431d770a66e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Mar 5 15:53:15 2010 +0000
| 
|     desciptions for domain adaptation related examples
| 
| A	examples/descriptions/modular/classifier_domainadaptationsvm_modular.txt
| A	examples/descriptions/modular/classifier_svmlight_linear_term_modular.txt
|  
* commit d4ad16cdcdaf50aa59db440d995f0b3d98f7660b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 21:18:47 2010 +0000
| 
|     rename all kernels_* to kernel_*
| 
| A	examples/descriptions/static/kernel_chi2.txt
| A	examples/descriptions/static/kernel_combined.txt
| A	examples/descriptions/static/kernel_commulongstring.txt
| A	examples/descriptions/static/kernel_commwordstring.txt
| A	examples/descriptions/static/kernel_const.txt
| A	examples/descriptions/static/kernel_custom.txt
| A	examples/descriptions/static/kernel_linear.txt
| A	examples/descriptions/static/kernel_linearbyte.txt
| A	examples/descriptions/static/kernel_linearstring.txt
| A	examples/descriptions/static/kernel_linearword.txt
| A	examples/descriptions/static/kernel_localalignmentstring.txt
| A	examples/descriptions/static/kernel_localityimprovedstring.txt
| A	examples/descriptions/static/kernel_oligostring.txt
| A	examples/descriptions/static/kernel_poly.txt
| A	examples/descriptions/static/kernel_polymatchstring.txt
| A	examples/descriptions/static/kernel_polymatchword.txt
| D	examples/descriptions/static/kernels_chi2.txt
| D	examples/descriptions/static/kernels_combined.txt
| D	examples/descriptions/static/kernels_commulongstring.txt
| D	examples/descriptions/static/kernels_commwordstring.txt
| D	examples/descriptions/static/kernels_const.txt
| D	examples/descriptions/static/kernels_custom.txt
| D	examples/descriptions/static/kernels_linear.txt
| D	examples/descriptions/static/kernels_linearbyte.txt
| D	examples/descriptions/static/kernels_linearstring.txt
| D	examples/descriptions/static/kernels_linearword.txt
| D	examples/descriptions/static/kernels_localalignmentstring.txt
| D	examples/descriptions/static/kernels_localityimprovedstring.txt
| D	examples/descriptions/static/kernels_oligostring.txt
| D	examples/descriptions/static/kernels_poly.txt
| D	examples/descriptions/static/kernels_polymatchstring.txt
| D	examples/descriptions/static/kernels_polymatchword.txt
| A	examples/undocumented/matlab_and_octave/kernel_chi2.m
| A	examples/undocumented/matlab_and_octave/kernel_combined.m
| A	examples/undocumented/matlab_and_octave/kernel_commulongstring.m
| A	examples/undocumented/matlab_and_octave/kernel_commwordstring.m
| A	examples/undocumented/matlab_and_octave/kernel_const.m
| A	examples/undocumented/matlab_and_octave/kernel_custom.m
| A	examples/undocumented/matlab_and_octave/kernel_diag.m
| A	examples/undocumented/matlab_and_octave/kernel_distance.m
| A	examples/undocumented/matlab_and_octave/kernel_fixeddegreestring.m
| A	examples/undocumented/matlab_and_octave/kernel_gaussian.m
| A	examples/undocumented/matlab_and_octave/kernel_gaussianshift.m
| A	examples/undocumented/matlab_and_octave/kernel_histogramword.m
| A	examples/undocumented/matlab_and_octave/kernel_lik.m
| A	examples/undocumented/matlab_and_octave/kernel_linear.m
| A	examples/undocumented/matlab_and_octave/kernel_linearbyte.m
| A	examples/undocumented/matlab_and_octave/kernel_linearstring.m
| A	examples/undocumented/matlab_and_octave/kernel_linearword.m
| A	examples/undocumented/matlab_and_octave/kernel_localalignmentstring.m
| A	examples/undocumented/matlab_and_octave/kernel_localityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernel_oligostring.m
| A	examples/undocumented/matlab_and_octave/kernel_poly.m
| A	examples/undocumented/matlab_and_octave/kernel_polymatchstring.m
| A	examples/undocumented/matlab_and_octave/kernel_polymatchword.m
| A	examples/undocumented/matlab_and_octave/kernel_sigmoid.m
| A	examples/undocumented/matlab_and_octave/kernel_simplelocalityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernel_sparsegaussian.m
| A	examples/undocumented/matlab_and_octave/kernel_sparselinear.m
| A	examples/undocumented/matlab_and_octave/kernel_sparsepoly.m
| A	examples/undocumented/matlab_and_octave/kernel_spectrum.m
| A	examples/undocumented/matlab_and_octave/kernel_weighted_spec.m
| A	examples/undocumented/matlab_and_octave/kernel_weightedcommwordstring.m
| A	examples/undocumented/matlab_and_octave/kernel_weighteddegreepositionstring.m
| A	examples/undocumented/matlab_and_octave/kernel_weighteddegreestring.m
| D	examples/undocumented/matlab_and_octave/kernels_chi2.m
| D	examples/undocumented/matlab_and_octave/kernels_combined.m
| D	examples/undocumented/matlab_and_octave/kernels_commulongstring.m
| D	examples/undocumented/matlab_and_octave/kernels_commwordstring.m
| D	examples/undocumented/matlab_and_octave/kernels_const.m
| D	examples/undocumented/matlab_and_octave/kernels_custom.m
| D	examples/undocumented/matlab_and_octave/kernels_diag.m
| D	examples/undocumented/matlab_and_octave/kernels_distance.m
| D	examples/undocumented/matlab_and_octave/kernels_fixeddegreestring.m
| D	examples/undocumented/matlab_and_octave/kernels_gaussian.m
| D	examples/undocumented/matlab_and_octave/kernels_gaussianshift.m
| D	examples/undocumented/matlab_and_octave/kernels_histogramword.m
| D	examples/undocumented/matlab_and_octave/kernels_lik.m
| D	examples/undocumented/matlab_and_octave/kernels_linear.m
| D	examples/undocumented/matlab_and_octave/kernels_linearbyte.m
| D	examples/undocumented/matlab_and_octave/kernels_linearstring.m
| D	examples/undocumented/matlab_and_octave/kernels_linearword.m
| D	examples/undocumented/matlab_and_octave/kernels_localalignmentstring.m
| D	examples/undocumented/matlab_and_octave/kernels_localityimprovedstring.m
| D	examples/undocumented/matlab_and_octave/kernels_oligostring.m
| D	examples/undocumented/matlab_and_octave/kernels_poly.m
| D	examples/undocumented/matlab_and_octave/kernels_polymatchstring.m
| D	examples/undocumented/matlab_and_octave/kernels_polymatchword.m
| D	examples/undocumented/matlab_and_octave/kernels_sigmoid.m
| D	examples/undocumented/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| D	examples/undocumented/matlab_and_octave/kernels_sparsegaussian.m
| D	examples/undocumented/matlab_and_octave/kernels_sparselinear.m
| D	examples/undocumented/matlab_and_octave/kernels_sparsepoly.m
| D	examples/undocumented/matlab_and_octave/kernels_spectrum.m
| D	examples/undocumented/matlab_and_octave/kernels_weighted_spec.m
| D	examples/undocumented/matlab_and_octave/kernels_weightedcommwordstring.m
| D	examples/undocumented/matlab_and_octave/kernels_weighteddegreepositionstring.m
| D	examples/undocumented/matlab_and_octave/kernels_weighteddegreestring.m
| M	examples/undocumented/python/kernel_linearbyte.py
|  
* commit d7df314cf2690d14b0a56b9440afcc4f18685aac
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 3 15:46:25 2010 +0000
| 
|     -- included a check that the size of the segment_mask corresponds to the size of
|     	the observation matrix. To do that I had to set the observation matrix before the
|     	segment_mask in all interfaces
| 
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit ffa83b39a3f14f42b49c30145ae4e8f9b5c7f3d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 15:14:22 2010 +0000
| 
|     gzip compress example
| 
| D	data/DynProg_example_py.dat.mat_pickle
| A	data/DynProg_example_py.pickle.gz
|  
* commit 4379b56c701a6cded7ff34e951d77ffa7d8b6ace
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 15:13:55 2010 +0000
| 
|     use pickle to load example
| 
| M	examples/undocumented/python_modular/structure_dynprog_modular.py
|  
* commit 667c9cc8a7deed088c2d6bd2de07e02c4a24f8ec
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 3 14:55:44 2010 +0000
| 
|     -- new example
| 
| A	data/DynProg_example_py.dat.mat_pickle
|  
* commit 7c0c486b85103b149690f2ec8a2dc93528ba1df8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 08:44:55 2010 +0000
| 
|     update FAQ to say yes windows works partially but octave_modular now crashes
| 
| M	doc/pages/FAQ.mainpage
|  
* commit 74d82888ff82103c21a87e044b3bca431ff6333d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 3 08:05:56 2010 +0000
| 
|     fix mkl twoclass/liblinear example
| 
| M	examples/undocumented/cmdline/classifier_liblinear.sg
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
|  
* commit f9fb9f745932dc4f446210d3d6b814f559da7299
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:27:41 2010 +0000
| 
|     examples/undocumneted/matlab/tools/README converted to Matlab redable Contents.m
| 
| A	examples/undocumented/matlab_and_octave/tools/Contents.m
|  
* commit 2eda46774fa39685148cb0ff6ff3cc0902613247
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:19:24 2010 +0000
| 
|     svmsgd_modular example updated also for R and octave
| 
| M	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| M	examples/undocumented/r_modular/classifier_svmsgd_modular.R
|  
* commit b3427b320df64d719fb42f04a5121fb0504524d9
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 14:11:33 2010 +0000
| 
|     classifier_svmsgd (moduar): epsilon removed and replaced with set_epoches
| 
| M	examples/descriptions/modular/classifier_svmsgd.txt
| M	examples/undocumented/python/classifier_lda.py
| M	examples/undocumented/python_modular/classifier_svmsgd_modular.py
|  
* commit f2dbbd888d28ad496f8619eca3f37eb50cdfe084
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 14:04:54 2010 +0000
| 
|     also copy tools directory to get the examples to run reliably
| 
| M	examples/generate_documented.sh
|  
* commit f2be346a8757e040cad740d2e2a3b64cd53ef632
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 14:04:30 2010 +0000
| 
|     update docu/install instructions based on vojtechs comments
| 
| M	src/INSTALL
| M	src/libshogunui/SGInterface.cpp
|  
* commit 7311f8ac4141702a06c0b45ea6c640df2c19675b
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 13:22:47 2010 +0000
| 
|     small mistakes fixed
| 
| M	examples/descriptions/static/classifier_gmnpsvm.txt
| M	examples/descriptions/static/classifier_gpbtsvm.txt
| M	examples/descriptions/static/classifier_lda.txt
| M	examples/descriptions/static/classifier_liblinear.txt
| M	examples/descriptions/static/classifier_liblinear_objective.txt
| M	examples/descriptions/static/classifier_libsvm.txt
| M	examples/descriptions/static/classifier_libsvmmulticlass.txt
| M	examples/descriptions/static/classifier_lpm.txt
| M	examples/descriptions/static/classifier_mpdsvm.txt
| M	examples/descriptions/static/classifier_perceptron.txt
| M	examples/descriptions/static/classifier_subgradientsvm.txt
| M	examples/descriptions/static/classifier_svmlight_wdkernel.txt
| M	examples/descriptions/static/classifier_svmlight_wds_batch.txt
| M	examples/descriptions/static/classifier_svmlin.txt
| M	examples/descriptions/static/classifier_svmocas.txt
| M	examples/descriptions/static/classifier_svmsgd_objective.txt
|  
* commit 1041f0424fa46150fcca5b3ffc64f7b6e0f82b12
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 13:06:09 2010 +0000
| 
|     documentation of modular classification examples finished
| 
| A	examples/descriptions/modular/classifier_perceptron.txt
| A	examples/descriptions/modular/classifier_subgradientsvm.txt
| A	examples/descriptions/modular/classifier_svmlight.txt
| A	examples/descriptions/modular/classifier_svmlight_batch_linadd.txt
| A	examples/descriptions/modular/classifier_svmlin.txt
| A	examples/descriptions/modular/classifier_svmocas.txt
| A	examples/descriptions/modular/classifier_svmsgd.txt
| M	examples/descriptions/static/classifier_libsvmoneclass.txt
| M	examples/descriptions/static/classifier_svmlight.txt
|  
* commit 469dc2d3143cf416ac02cb97f840502acaab2d61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 12:16:22 2010 +0000
| 
|     renaming of classifiers
| 
| A	examples/descriptions/modular/classifier_gpbtsvm.txt
| D	examples/descriptions/modular/classifier_gpbtsvm_modular.txt
| A	examples/descriptions/modular/classifier_knn.txt
| D	examples/descriptions/modular/classifier_knn_modular.txt
| A	examples/descriptions/modular/classifier_larank.txt
| D	examples/descriptions/modular/classifier_larank_modular.txt
| A	examples/descriptions/modular/classifier_lda.txt
| D	examples/descriptions/modular/classifier_lda_modular.txt
| A	examples/descriptions/modular/classifier_liblinear.txt
| D	examples/descriptions/modular/classifier_liblinear_modular.txt
| A	examples/descriptions/modular/classifier_libsvm.txt
| A	examples/descriptions/modular/classifier_libsvm_minimal.txt
| D	examples/descriptions/modular/classifier_libsvm_minimal_modular.txt
| D	examples/descriptions/modular/classifier_libsvm_modular.txt
| A	examples/descriptions/modular/classifier_libsvmmulticlass.txt
| D	examples/descriptions/modular/classifier_libsvmmulticlass_modular.txt
| A	examples/descriptions/modular/classifier_libsvmoneclass.txt
| D	examples/descriptions/modular/classifier_libsvmoneclass_modular.txt
| A	examples/descriptions/modular/classifier_mpdsvm.txt
| D	examples/descriptions/modular/classifier_mpdsvm_modular.txt
|  
* commit 14867ff1a5ce6fc552ad2ca375f93540c629d845
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 2 12:13:50 2010 +0000
| 
|     rename files to match what is expected as input
| 
| A	examples/descriptions/modular/classifier_custom_kernel.txt
| D	examples/descriptions/modular/classifier_custom_kernel_modular.txt
| A	examples/descriptions/modular/classifier_gmnpsvm.txt
| D	examples/descriptions/modular/classifier_gmnpsvm_modular.txt
| A	examples/descriptions/modular/features_read_svmlight_format.txt
| D	examples/descriptions/modular/features_read_svmlight_format_modular
| A	examples/descriptions/modular/features_simple.txt
| A	examples/descriptions/modular/features_simple_byte.txt
| D	examples/descriptions/modular/features_simple_byte_modular
| A	examples/descriptions/modular/features_simple_longint.txt
| D	examples/descriptions/modular/features_simple_longint_modular
| D	examples/descriptions/modular/features_simple_modular
| A	examples/descriptions/modular/features_simple_real.txt
| D	examples/descriptions/modular/features_simple_real_modular
| A	examples/descriptions/modular/features_sparse.txt
| D	examples/descriptions/modular/features_sparse_modular
| A	examples/descriptions/modular/features_string_char.txt
| A	examples/descriptions/modular/features_string_char_compressed.txt
| D	examples/descriptions/modular/features_string_char_compressed_modular
| D	examples/descriptions/modular/features_string_char_modular
| A	examples/descriptions/modular/features_string_file.txt
| A	examples/descriptions/modular/features_string_file_char.txt
| D	examples/descriptions/modular/features_string_file_char_modular
| D	examples/descriptions/modular/features_string_file_modular
| A	examples/descriptions/modular/features_string_sliding_window.txt
| D	examples/descriptions/modular/features_string_sliding_window_modular
| A	examples/descriptions/modular/features_string_ulong.txt
| D	examples/descriptions/modular/features_string_ulong_modular
| A	examples/descriptions/modular/features_string_word.txt
| D	examples/descriptions/modular/features_string_word_modular
| A	examples/descriptions/modular/mkl_binclass.txt
| D	examples/descriptions/modular/mkl_binclass_modular
| A	examples/descriptions/modular/mkl_multiclass.txt
| D	examples/descriptions/modular/mkl_multiclass_modular
|  
* commit 8a0240a9cdbdb11a742c9f6d20e682f0779b1b48
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 12:12:50 2010 +0000
| 
|     added new descriptions of modular examples
| 
| A	examples/descriptions/modular/classifier_gpbtsvm_modular.txt
| A	examples/descriptions/modular/classifier_knn_modular.txt
| A	examples/descriptions/modular/classifier_larank_modular.txt
| A	examples/descriptions/modular/classifier_lda_modular.txt
| A	examples/descriptions/modular/classifier_liblinear_modular.txt
| A	examples/descriptions/modular/classifier_libsvm_minimal_modular.txt
| A	examples/descriptions/modular/classifier_libsvm_modular.txt
| A	examples/descriptions/modular/classifier_libsvmmulticlass_modular.txt
| A	examples/descriptions/modular/classifier_libsvmoneclass_modular.txt
| A	examples/descriptions/modular/classifier_mpdsvm_modular.txt
|  
* commit 05f90ab61266ccb70e2df97edf30eece745ed1e8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:36:59 2010 +0000
| 
|     -- one more
| 
| A	examples/descriptions/static/kernels_commwordstring.txt
|  
* commit a9ec3f55d65cc2234c3ae7676f97bcb6ea636a71
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:36:55 2010 +0000
| 
|     -- more descriptions
| 
| A	examples/descriptions/static/kernels_const.txt
| A	examples/descriptions/static/kernels_custom.txt
|  
* commit 61fb502fc4edb4aacbee2f951ab51d2b34a2670f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:23:12 2010 +0000
| 
|     + removed parts that refered to modular interface
| 
| M	examples/descriptions/static/distribution_hmm.txt
| M	examples/descriptions/static/regression_krr.txt
| M	examples/descriptions/static/regression_libsvr.txt
| M	examples/descriptions/static/regression_svrlight.txt
|  
* commit 8952d7e29b273ebf0b80123f19ace1ae52204f0f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Mar 2 11:18:53 2010 +0000
| 
|     + added modular decriptions
|     + have to change statis descriptions where examples differ
| 
| A	examples/descriptions/modular/clustering_hierarchical.txt
| A	examples/descriptions/modular/clustering_kmeans.txt
| A	examples/descriptions/modular/distribution_histogram.txt
| A	examples/descriptions/modular/distribution_hmm.txt
| A	examples/descriptions/modular/distribution_linear_hmm.txt
| A	examples/descriptions/modular/preproc_logplusone.txt
| A	examples/descriptions/modular/preproc_normone.txt
| A	examples/descriptions/modular/preproc_prunevarsubmean.txt
| A	examples/descriptions/modular/preproc_sortulongstring.txt
| A	examples/descriptions/modular/preproc_sortwordstring.txt
| A	examples/descriptions/modular/regression_krr.txt
| A	examples/descriptions/modular/regression_libsvr.txt
| A	examples/descriptions/modular/regression_svrlight.txt
|  
* commit 2defc3406c6e14dd10d178259648b60b064a5e68
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 11:12:38 2010 +0000
| 
|     first two modular examples documented
| 
| A	examples/descriptions/modular/classifier_custom_kernel_modular.txt
| A	examples/descriptions/modular/classifier_gmnpsvm_modular.txt
|  
* commit e0143f49e607ab0e99de67c28980c9aa4a9c01f7
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Mar 2 10:52:43 2010 +0000
| 
|     added new descriptions of static examples
| 
| A	examples/descriptions/static/classifier_lda.txt
| A	examples/descriptions/static/classifier_liblinear.txt
| A	examples/descriptions/static/classifier_liblinear_objective.txt
| A	examples/descriptions/static/classifier_lpboost.txt
| A	examples/descriptions/static/classifier_lpm.txt
| M	examples/descriptions/static/classifier_svmocas_objective.txt
|  
* commit 8d4ec1a795fcc9d7240418b1d27b63e81fe6f7c4
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 17:06:33 2010 +0000
| 
|     fixed a few examples, in particular the MKL example didn't do the right thing
| 
| M	examples/undocumented/python_modular/features_string_file_char_modular.py
| M	examples/undocumented/python_modular/mkl_binclass_modular.py
| M	examples/undocumented/python_modular/mkl_multiclass_modular.py
|  
* commit 1ca14da4bc84c23ef770d08f5c7864ef08114597
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 17:04:50 2010 +0000
| 
|     added docs for modular mkl examples
| 
| A	examples/descriptions/modular/mkl_binclass_modular
| A	examples/descriptions/modular/mkl_multiclass_modular
|  
* commit 5ed503f8aae8452c8b2be9429035c51e974ad74a
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Mar 1 16:12:22 2010 +0000
| 
|     documentation of features for modular examples
| 
| A	examples/descriptions/modular/features_read_svmlight_format_modular
| A	examples/descriptions/modular/features_simple_byte_modular
| A	examples/descriptions/modular/features_simple_longint_modular
| A	examples/descriptions/modular/features_simple_modular
| A	examples/descriptions/modular/features_simple_real_modular
| A	examples/descriptions/modular/features_sparse_modular
| A	examples/descriptions/modular/features_string_char_compressed_modular
| A	examples/descriptions/modular/features_string_char_modular
| A	examples/descriptions/modular/features_string_file_char_modular
| A	examples/descriptions/modular/features_string_file_modular
| A	examples/descriptions/modular/features_string_sliding_window_modular
| A	examples/descriptions/modular/features_string_ulong_modular
| A	examples/descriptions/modular/features_string_word_modular
|  
* commit e26a8007ae8e6c30e003d509b79c8e51d2a898f9
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Mar 1 15:52:37 2010 +0000
| 
|     added update of distance example
| 
| M	examples/descriptions/static/distance_braycurtis.txt
| M	examples/descriptions/static/distance_canberra.txt
| A	examples/descriptions/static/distance_canberraword.txt
| M	examples/descriptions/static/distance_chebyshew.txt
| M	examples/descriptions/static/distance_chisquare.txt
| M	examples/descriptions/static/distance_cosine.txt
| M	examples/descriptions/static/distance_euclidian.txt
| M	examples/descriptions/static/distance_geodesic.txt
| A	examples/descriptions/static/distance_hammingword.txt
| M	examples/descriptions/static/distance_jensen.txt
| M	examples/descriptions/static/distance_manhatten.txt
| A	examples/descriptions/static/distance_manhattenword.txt
| M	examples/descriptions/static/distance_minkowski.txt
| M	examples/descriptions/static/distance_tanimoto.txt
|  
* commit 2d78ef52d53c4152632dd08e29c6d6e0c0b5d20b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 14:24:37 2010 +0000
| 
|     explain which python packages need to be installed and fix configure to fail when python is requrested but not installed
| 
| M	src/INSTALL
| M	src/configure
|  
* commit 4635134d3ccbfdbbd2e725814967b76e9139df9f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 14:24:07 2010 +0000
| 
|     + added missing descriptions
|     + corrected some spelling errors
| 
| A	examples/descriptions/static/clustering_hierarchical.txt
| A	examples/descriptions/static/distribution_histogram.txt
| M	examples/descriptions/static/preproc_logplusone.txt
| A	examples/descriptions/static/preproc_normone.txt
| M	examples/descriptions/static/preproc_prunevarsubmean.txt
| A	examples/descriptions/static/preproc_sortulongstring.txt
| M	examples/descriptions/static/preproc_sortwordstring.txt
|  
* commit fa8306c3c982bc4a4c34a70f92f0be06b43f30e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 13:36:50 2010 +0000
| 
|     fix typo
| 
| M	src/libshogun/preproc/LogPlusOne.h
|  
* commit d99e3d790078f5f5db52e8d43d314ad90b3b2d0e
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 10:53:34 2010 +0000
| 
|     + only short description of preproc chi2 kernel
|     + preproc info is missing
| 
| A	examples/descriptions/static/preproc_logplusone.txt
| A	examples/descriptions/static/preproc_prunevarsubmean.txt
| A	examples/descriptions/static/preproc_sortwordstring.txt
|  
* commit cf05d1747a4cbdf4f0f85ca9a7e7185f5c1f7307
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Mar 1 10:44:59 2010 +0000
| 
|     + added descriptions to some of the examples
| 
| A	examples/descriptions/static/clustering_kmeans.txt
| A	examples/descriptions/static/distribution_hmm.txt
| A	examples/descriptions/static/distribution_linear_hmm.txt
| A	examples/descriptions/static/regression_krr.txt
| A	examples/descriptions/static/regression_libsvr.txt
| A	examples/descriptions/static/regression_svrlight.txt
|  
* commit 99a42d67ea20c4a09367f08f93ffccf2c92d4952
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 10:22:30 2010 +0000
| 
|     forget about python when it is not properly installed
| 
| M	src/configure
|  
* commit 9c74d2ae9382770f1f4b4700fdd9d92c76c3286b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 10:15:03 2010 +0000
| 
|     proper python2.4 detection...
| 
| M	src/configure
|  
* commit 01da4cdeb2e121f05b694176a020ae509fb4e4d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:36:44 2010 +0000
| 
|     really disable all syntax highlighting, even for error messages
| 
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 55dc21b1990b2670e892179ab54323ad49bee13f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:11:53 2010 +0000
| 
|     don't enable python-static when python is not available
| 
| M	src/configure
|  
* commit b2bbc9217343bb69c6ff747ee2436535578bd1ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 1 09:07:08 2010 +0000
| 
|     fix liblinear examples to work with new code
| 
| M	examples/undocumented/matlab_and_octave/classifier_liblinear.m
| M	examples/undocumented/matlab_and_octave/classifier_liblinear_objective.m
|  
* commit 42cb10552280aeb69324729db5da7b3bc47335a8
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Sat Feb 27 22:30:17 2010 +0000
| 
|     added new descriptions
| 
| M	examples/descriptions/static/classifier_mpdsvm.txt
| M	examples/descriptions/static/classifier_subgradientsvm.txt
| A	examples/descriptions/static/classifier_svmlight.txt
| A	examples/descriptions/static/classifier_svmlight_wdkernel.txt
| A	examples/descriptions/static/classifier_svmlight_wds_batch.txt
| A	examples/descriptions/static/classifier_svmlin.txt
| A	examples/descriptions/static/classifier_svmocas.txt
| A	examples/descriptions/static/classifier_svmocas_objective.txt
| A	examples/descriptions/static/classifier_svmsgd.txt
| A	examples/descriptions/static/classifier_svmsgd_objective.txt
|  
* commit 30700332452dc55b30cbe498942d445f4c8cae63
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 15:55:58 2010 +0000
| 
|     new documentation added
| 
| A	examples/descriptions/static/classifier_subgradientsvm.txt
|  
* commit bc8662febb45f6686e8d5501c75d5c6035354572
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 15:29:55 2010 +0000
| 
|     new descprions added
| 
| A	examples/descriptions/static/classifier_mpdsvm.txt
| A	examples/descriptions/static/classifier_perceptron.txt
|  
* commit dad45f031e50a2d1ac5b9cb02912177deacda5cd
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 14:19:05 2010 +0000
| 
|     two new descriptions added
| 
| A	examples/descriptions/static/classifier_libsvmmulticlass.txt
| A	examples/descriptions/static/classifier_libsvmoneclass.txt
|  
* commit bd12ba77ffba99fd54d054bc3206dd063cc9177e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Fri Feb 26 13:51:12 2010 +0000
| 
|     Added description of gpdt, gmnp and knn. Plus changes in libsvm.
| 
| A	examples/descriptions/static/classifier_gmnpsvm.txt
| A	examples/descriptions/static/classifier_gpbtsvm.txt
| A	examples/descriptions/static/classifier_knn.txt
| M	examples/descriptions/static/classifier_libsvm.txt
|  
* commit 3efbb3c29c73e8a70ad19e72978ea0f48005ce85
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 12:10:30 2010 +0000
| 
| A	examples/descriptions/static/distance_minkowski.txt
|  
* commit a7d1d92b53611906b2a25d40bb045bffec43e953
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 12:04:50 2010 +0000
| 
|     added examples 'REAL' distances
| 
| M	examples/descriptions/static/distance_braycurtis.txt
| A	examples/descriptions/static/distance_canberra.txt
| A	examples/descriptions/static/distance_chebyshew.txt
| A	examples/descriptions/static/distance_chisquare.txt
| A	examples/descriptions/static/distance_cosine.txt
| A	examples/descriptions/static/distance_euclidian.txt
| A	examples/descriptions/static/distance_geodesic.txt
| A	examples/descriptions/static/distance_jensen.txt
| A	examples/descriptions/static/distance_manhatten.txt
| A	examples/descriptions/static/distance_tanimoto.txt
|  
* commit 79da396f7eca8cc60d4bc4c34af21c6cd3cc83ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 11:53:36 2010 +0000
| 
|     - disable line prefixes (that were on by default)
|     - mention how syntax highlighting can be disabled (for poor matlab gui users ;)
| 
| M	src/libshogun/lib/io.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit a01978c73d3f9957aab02e9b9debf11013639080
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Feb 26 10:45:38 2010 +0000
| 
|     added example bray curtis distance
| 
| A	examples/descriptions/static/distance_braycurtis.txt
|  
* commit 88c9feb5b9ab52d8fd954d2d9d2d529cd64e2e07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 10:29:41 2010 +0000
| 
|     fix reference counting for linear hmms/distributions set/get_features
| 
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/LinearHMM.cpp
|  
* commit 4dc568e96ca6349132400a0d164e4958b6e5120e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 26 05:27:17 2010 +0000
| 
|     hopefully fix access of feature vectors in matrices >2GB (but still with no more than 2^31 features/ 2^31 examples)
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit e0d9a54ed6881f5580e264ce2c5a5b3964612a9b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Feb 25 17:36:59 2010 +0000
| 
|     renamed set_C(c1, c2) to set_C(c_neg, c_pos) to make it self-explanatory
| 
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.h
|  
* commit 268a7e54f5b1f0844568190277302d73f940ec11
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 13:57:01 2010 +0000
| 
|     avoid bias messing around when bias is disabled and return 0 immediately
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 2cfecc1186059b93c4d8a63a09263e28f9ccb607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 13:25:40 2010 +0000
| 
|     add support for disabling bias for libsvm - thanks Chih-Jen Lin for the code
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 5d40334a5382d8a8732fd9d7e168e6ee1150c042
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 12:57:08 2010 +0000
| 
|     fix a bug when returned matrices are >4GB
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 216178c6b16cd09190f17909966d3a349717a9af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 09:14:26 2010 +0000
| 
|     minor cleanup
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
|  
* commit ab0dbf62a78e13549f0cdd579414fce48562dbc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 25 09:14:19 2010 +0000
| 
|     fix crasher in out of memory condigiton
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 85913c206c0e2e6ef09cd9609ae376da87c6abf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 24 18:06:30 2010 +0000
| 
|     add scatter kernel normalizer for scattersvm
| 
| A	src/libshogun/kernel/ScatterKernelNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 875b49a70f13a8c93f81097ce3f71db5fd4c4efd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 24 09:08:16 2010 +0000
| 
|     support setting of maximum number of iterations for liblinear and include time limit
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/Tron.h
|  
* commit 81eb18c1b8e9dbc91e17050ce2877a8bd0d3e522
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 23 15:07:01 2010 +0000
| 
|     -- more kernel descriptions
| 
| A	examples/descriptions/static/kernels_chi2.txt
| A	examples/descriptions/static/kernels_combined.txt
| A	examples/descriptions/static/kernels_commulongstring.txt
|  
* commit aa9ca398af734f416625cd5f3768ec2c049c0a2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 23 15:04:39 2010 +0000
| 
|     add function to fetch multiclass type
| 
| M	src/libshogun/classifier/svm/MultiClassSVM.h
|  
* commit 4c0ad368a274d31402b4086aaf8cce18299f7d4a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 23 11:29:05 2010 +0000
| 
|     no longer assign labels to sub-svms
| 
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
|  
* commit 465292abf53b738bda83ea8feaa87d134cfe8a41
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 21:00:27 2010 +0000
| 
|     add an option to set custom weights / normalization const in wd features
| 
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/modular/Features.i
|  
* commit 4ec6aa83f5d82adbcd4526269cbcca5fd94decaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 13:13:26 2010 +0000
| 
|     add todo snippet for liblinear multiclass
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 265c699e73a931e1c8c34afd3bf0d6589ccfe3ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 11:47:39 2010 +0000
| 
|     fix bias handling in liblinear L1_*, turn on file/error nr for error msg's
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/lib/io.cpp
|  
* commit 19994cf1450d4f221e28925dfcd2e6a333b3917e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 22 09:16:42 2010 +0000
| 
|     add set/get io object functions and update news
| 
| M	src/NEWS
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 79649700a37a6352fbe8400e481c43c4cccfdc49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 22:18:14 2010 +0000
| 
|     - fix multitaskkernelnormalizer inclusion order
|     - add function to simplefeatures to obtain fm directly from dotfeatures
| 
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 4a69bab888a7e502cd720f44d605573a8abcd83d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 18:03:09 2010 +0000
| 
|     fixed multiple friend
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit d61315e292f0b18daef43c3b61a8e64a915b2a94
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 18:00:22 2010 +0000
| 
|     updated interfaces for MT kernels
| 
| M	src/modular/Kernel.i
| M	src/modular/SGBase.i
|  
* commit 9eec6463a01a0da5ce6001840aa73111390cedc2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:59:00 2010 +0000
| 
|     included some stl containers
| 
| M	src/libshogun/base/SGObject.h
|  
* commit 91bdeb6782823cc707b660b3d1da07dae3d25f56
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:58:23 2010 +0000
| 
|     further work on MT kernels
| 
| A	src/libshogun/kernel/MultitaskKernelMklNormalizer.h
| A	src/libshogun/kernel/MultitaskKernelPlifNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit c8408fd1610df0fe089a6bf6067aa87402aad612
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:57:10 2010 +0000
| 
|     added MT normalizers as friends
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit a86b2a36794c9f6c02c62d820b5f4fdf45ba0954
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Feb 19 17:55:59 2010 +0000
| 
|     added kernel_normalizer type enum
| 
| M	src/libshogun/kernel/KernelNormalizer.h
|  
* commit f01f28b118ebd6ffc57f51a78ec0e4af63f7535a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 15:52:37 2010 +0000
| 
|     remove transposed wd features
| 
| D	src/libshogun/features/TransposedWDFeatures.cpp
| D	src/libshogun/features/TransposedWDFeatures.h
| M	src/modular/Features.i
|  
* commit e1fffb2afe5cfcf1b1e6d371725927c48db9130e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 15:51:47 2010 +0000
| 
|     add transposed wd features
| 
| A	src/libshogun/features/TransposedWDFeatures.cpp
| A	src/libshogun/features/TransposedWDFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/modular/Features.i
|  
* commit b9158c3359ee5f9f83f20061a7d2782b49fa30b8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 19 13:06:28 2010 +0000
| 
|     -- two more descriptions
| 
| A	examples/descriptions/static/kernels_polymatchstring.txt
| A	examples/descriptions/static/kernels_polymatchword.txt
|  
* commit f7f986532cf866a3accfc5bb4954fd6d1e33a6f4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 19 13:06:17 2010 +0000
| 
|     -- new example description + some additional debug code
| 
| A	examples/descriptions/static/kernels_poly.txt
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/Plif.cpp
|  
* commit a9deb728cd1ab5175700f98f55388ef3bd6648dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 19 10:47:24 2010 +0000
| 
|     set max train time for libsvr
| 
| M	src/libshogun/regression/svr/LibSVR.cpp
|  
* commit 40123cc6393d3032d69623a303029ca46bab4d3b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Feb 18 15:29:23 2010 +0000
| 
|     added mask normalizer and improved tree normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelMaskNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit b76d0441acf5119d35221fe8e8c533aa02e3eb8e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 16:34:44 2010 +0000
| 
|     fix string feature transpose function
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit da393023d905ed2a787c29d11db4b0f760ff133b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 12:38:12 2010 +0000
| 
|     fix get_transposed() in string features
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit 4f20ff7b0837b37bd548dc4e01a3882fcf9ccb29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 12:28:49 2010 +0000
| 
|     implement feature iterator for wd and spectrum kernel features
| 
| M	src/configure
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
|  
* commit d28b98165985e7f38593452aed5dc387d3652fd0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 16 11:28:07 2010 +0000
| 
|     -- modified description
| 
| M	examples/descriptions/static/kernels_oligostring.txt
|  
* commit a78533901f4cae2d371b8ca10fd01f8b28dda5a6
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 16 11:27:54 2010 +0000
| 
|     -- more kernel descriptions
| 
| M	examples/descriptions/static/kernels_linearstring.txt
| A	examples/descriptions/static/kernels_localalignmentstring.txt
| A	examples/descriptions/static/kernels_localityimprovedstring.txt
| A	examples/descriptions/static/kernels_oligostring.txt
|  
* commit bad213847669c75ef69cc3eafb9d422f3c5bbc68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 09:40:22 2010 +0000
| 
|     integreate sparse feature iterator in combined dot features
| 
| M	src/Makefile
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit d7f7f58a191f57a4d1f12556695509f7582811f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 16 05:55:16 2010 +0000
| 
|     L1 based liblinear methods work now
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit b7a3f236a3a4741689b028b6fd9b293cc7795fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 21:14:27 2010 +0000
| 
|     fix transpose functions
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit a6da66cab72a91e15402345f8bd954515748eaa9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 15 18:13:59 2010 +0000
| 
|     -- some more descriptions
| 
| A	examples/descriptions/static/kernels_linearbyte.txt
| A	examples/descriptions/static/kernels_linearword.txt
|  
* commit 2432e5738b2fab28244e51faa9c75311261a0697
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 15 18:13:50 2010 +0000
| 
|     -- started documenting kernel examples
| 
| A	examples/descriptions/static/kernels_linear.txt
| A	examples/descriptions/static/kernels_linearstring.txt
|  
* commit e1ce44686849d3fe4b1f0d99869577a428024fec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 18:03:56 2010 +0000
| 
|     modify L1 parts of liblinear to use new interface
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/modular/Features.i
|  
* commit a0831df7be6d8e0f9b99fecf3c64c23fe9580233
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 15 16:31:13 2010 +0000
| 
|     add an iterator to enable traversing non-zero components of (sparse) feature vectors
| 
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit c778e9374b99ddc9f6a2205b72059ba3da63fffb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 15:52:30 2010 +0000
| 
|     add example on how documentation could look like for libsvm
| 
| A	examples/descriptions/static/classifier_libsvm.txt
|  
* commit 4f789aad23fe02feec4a19acacaacfc1f763743e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 12:16:52 2010 +0000
| 
|     fix makefile to install examples
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit bb34d53758b1a6c056002f616a60816b5bee501f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 12:15:44 2010 +0000
| 
|     polished example documentation script
| 
| M	examples/generate_documented.sh
|  
* commit ae06dd9ccaabedc2194004255a43f90234155716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 11:20:12 2010 +0000
| 
|     re-add accidentally deleted examples
| 
| A	examples/undocumented/libshogun/Makefile
| A	examples/undocumented/libshogun/README
| A	examples/undocumented/libshogun/basic_minimal.cpp
| A	examples/undocumented/libshogun/classifier_libsvm.cpp
| A	examples/undocumented/libshogun/classifier_minimal_svm.cpp
| A	examples/undocumented/libshogun/classifier_mklmulticlass.cpp
| A	examples/undocumented/libshogun/kernel_gaussian.cpp
| A	examples/undocumented/libshogun/kernel_revlin.cpp
| A	examples/undocumented/libshogun/library_dyn_int.cpp
| A	examples/undocumented/libshogun/library_gc_array.cpp
| A	examples/undocumented/libshogun/library_hash.cpp
| A	examples/undocumented/libshogun/library_indirect_object.cpp
| A	examples/undocumented/matlab_and_octave/check.sh
| A	examples/undocumented/matlab_and_octave/classifier_gmnpsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_gpbtsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_knn.m
| A	examples/undocumented/matlab_and_octave/classifier_lda.m
| A	examples/undocumented/matlab_and_octave/classifier_liblinear.m
| A	examples/undocumented/matlab_and_octave/classifier_liblinear_objective.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvmmulticlass.m
| A	examples/undocumented/matlab_and_octave/classifier_libsvmoneclass.m
| A	examples/undocumented/matlab_and_octave/classifier_lpboost.m
| A	examples/undocumented/matlab_and_octave/classifier_lpm.m
| A	examples/undocumented/matlab_and_octave/classifier_mpdsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_perceptron.m
| A	examples/undocumented/matlab_and_octave/classifier_subgradientsvm.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight_wdkernel.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlight_wds_batch.m
| A	examples/undocumented/matlab_and_octave/classifier_svmlin.m
| A	examples/undocumented/matlab_and_octave/classifier_svmocas.m
| A	examples/undocumented/matlab_and_octave/classifier_svmocas_objective.m
| A	examples/undocumented/matlab_and_octave/classifier_svmsgd.m
| A	examples/undocumented/matlab_and_octave/classifier_svmsgd_objective.m
| A	examples/undocumented/matlab_and_octave/clustering_hierarchical.m
| A	examples/undocumented/matlab_and_octave/clustering_kmeans.m
| A	examples/undocumented/matlab_and_octave/distance_braycurtis.m
| A	examples/undocumented/matlab_and_octave/distance_canberra.m
| A	examples/undocumented/matlab_and_octave/distance_canberraword.m
| A	examples/undocumented/matlab_and_octave/distance_chebyshew.m
| A	examples/undocumented/matlab_and_octave/distance_chisquare.m
| A	examples/undocumented/matlab_and_octave/distance_cosine.m
| A	examples/undocumented/matlab_and_octave/distance_euclidian.m
| A	examples/undocumented/matlab_and_octave/distance_geodesic.m
| A	examples/undocumented/matlab_and_octave/distance_hammingword.m
| A	examples/undocumented/matlab_and_octave/distance_jensen.m
| A	examples/undocumented/matlab_and_octave/distance_manhatten.m
| A	examples/undocumented/matlab_and_octave/distance_manhattenword.m
| A	examples/undocumented/matlab_and_octave/distance_minkowski.m
| A	examples/undocumented/matlab_and_octave/distance_tanimoto.m
| A	examples/undocumented/matlab_and_octave/distribution_histogram.m
| A	examples/undocumented/matlab_and_octave/distribution_hmm.m
| A	examples/undocumented/matlab_and_octave/distribution_linearhmm.m
| A	examples/undocumented/matlab_and_octave/distribution_markovchain.m
| A	examples/undocumented/matlab_and_octave/features_dot_polynomial.m
| A	examples/undocumented/matlab_and_octave/features_dot_wdfeatures.m
| A	examples/undocumented/matlab_and_octave/features_dot_weightedspec.m
| A	examples/undocumented/matlab_and_octave/features_string.m
| A	examples/undocumented/matlab_and_octave/graphical/cluster_hierarchical.m
| A	examples/undocumented/matlab_and_octave/graphical/cluster_kmeans.m
| A	examples/undocumented/matlab_and_octave/graphical/entropy.m
| A	examples/undocumented/matlab_and_octave/graphical/hmm.m
| A	examples/undocumented/matlab_and_octave/graphical/lda_classification.m
| A	examples/undocumented/matlab_and_octave/graphical/local_alignment_kernel.m
| A	examples/undocumented/matlab_and_octave/graphical/mkl_pseudo_dna.m
| A	examples/undocumented/matlab_and_octave/graphical/spec_interp.m
| A	examples/undocumented/matlab_and_octave/graphical/svm_classification.m
| A	examples/undocumented/matlab_and_octave/graphical/svm_multiclass.m
| A	examples/undocumented/matlab_and_octave/graphical/svr_regression.m
| A	examples/undocumented/matlab_and_octave/graphical/test_gnpp_svm.m
| A	examples/undocumented/matlab_and_octave/graphical/test_poim_wds.m
| A	examples/undocumented/matlab_and_octave/graphical/test_regression.m
| A	examples/undocumented/matlab_and_octave/graphical/test_regression_mkl.m
| A	examples/undocumented/matlab_and_octave/graphical/test_spec_interp.m
| A	examples/undocumented/matlab_and_octave/graphical/test_svm_multiclass.m
| A	examples/undocumented/matlab_and_octave/graphical/test_wd_wds_parallel.m
| A	examples/undocumented/matlab_and_octave/graphical/wds_consensus.m
| A	examples/undocumented/matlab_and_octave/graphical/wds_shift_interp.m
| A	examples/undocumented/matlab_and_octave/kernels_chi2.m
| A	examples/undocumented/matlab_and_octave/kernels_combined.m
| A	examples/undocumented/matlab_and_octave/kernels_commulongstring.m
| A	examples/undocumented/matlab_and_octave/kernels_commwordstring.m
| A	examples/undocumented/matlab_and_octave/kernels_const.m
| A	examples/undocumented/matlab_and_octave/kernels_custom.m
| A	examples/undocumented/matlab_and_octave/kernels_diag.m
| A	examples/undocumented/matlab_and_octave/kernels_distance.m
| A	examples/undocumented/matlab_and_octave/kernels_fixeddegreestring.m
| A	examples/undocumented/matlab_and_octave/kernels_gaussian.m
| A	examples/undocumented/matlab_and_octave/kernels_gaussianshift.m
| A	examples/undocumented/matlab_and_octave/kernels_histogramword.m
| A	examples/undocumented/matlab_and_octave/kernels_lik.m
| A	examples/undocumented/matlab_and_octave/kernels_linear.m
| A	examples/undocumented/matlab_and_octave/kernels_linearbyte.m
| A	examples/undocumented/matlab_and_octave/kernels_linearstring.m
| A	examples/undocumented/matlab_and_octave/kernels_linearword.m
| A	examples/undocumented/matlab_and_octave/kernels_localalignmentstring.m
| A	examples/undocumented/matlab_and_octave/kernels_localityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernels_oligostring.m
| A	examples/undocumented/matlab_and_octave/kernels_poly.m
| A	examples/undocumented/matlab_and_octave/kernels_polymatchstring.m
| A	examples/undocumented/matlab_and_octave/kernels_polymatchword.m
| A	examples/undocumented/matlab_and_octave/kernels_sigmoid.m
| A	examples/undocumented/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| A	examples/undocumented/matlab_and_octave/kernels_sparsegaussian.m
| A	examples/undocumented/matlab_and_octave/kernels_sparselinear.m
| A	examples/undocumented/matlab_and_octave/kernels_sparsepoly.m
| A	examples/undocumented/matlab_and_octave/kernels_spectrum.m
| A	examples/undocumented/matlab_and_octave/kernels_weighted_spec.m
| A	examples/undocumented/matlab_and_octave/kernels_weightedcommwordstring.m
| A	examples/undocumented/matlab_and_octave/kernels_weighteddegreepositionstring.m
| A	examples/undocumented/matlab_and_octave/kernels_weighteddegreestring.m
| A	examples/undocumented/matlab_and_octave/mkl_classify_christmas_star.m
| A	examples/undocumented/matlab_and_octave/mkl_multiclass.m
| A	examples/undocumented/matlab_and_octave/mkl_regression_3sine_waves.m
| A	examples/undocumented/matlab_and_octave/mkl_regression_sine.m
| A	examples/undocumented/matlab_and_octave/preproc_logplusone.m
| A	examples/undocumented/matlab_and_octave/preproc_normone.m
| A	examples/undocumented/matlab_and_octave/preproc_prunevarsubmean.m
| A	examples/undocumented/matlab_and_octave/preproc_sortulongstring.m
| A	examples/undocumented/matlab_and_octave/preproc_sortwordstring.m
| A	examples/undocumented/matlab_and_octave/regression_krr.m
| A	examples/undocumented/matlab_and_octave/regression_libsvr.m
| A	examples/undocumented/matlab_and_octave/regression_svrlight.m
| A	examples/undocumented/matlab_and_octave/structure_dynprog.m
| A	examples/undocumented/matlab_and_octave/tests/test_classifier.m
| A	examples/undocumented/matlab_and_octave/tests/test_combined.m
| A	examples/undocumented/matlab_and_octave/tests/test_combined2.m
| A	examples/undocumented/matlab_and_octave/tests/test_complex_scenario.m
| A	examples/undocumented/matlab_and_octave/tests/test_custom_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_interface.m
| A	examples/undocumented/matlab_and_octave/tests/test_kernel_optimization.m
| A	examples/undocumented/matlab_and_octave/tests/test_knn.m
| A	examples/undocumented/matlab_and_octave/tests/test_l2svm.m
| A	examples/undocumented/matlab_and_octave/tests/test_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_linear_methods.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl_svr.m
| A	examples/undocumented/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| A	examples/undocumented/matlab_and_octave/tests/test_ocas_normalization.m
| A	examples/undocumented/matlab_and_octave/tests/test_one_class_svm.m
| A	examples/undocumented/matlab_and_octave/tests/test_regression_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_sliding_window.m
| A	examples/undocumented/matlab_and_octave/tests/test_sparse.m
| A	examples/undocumented/matlab_and_octave/tests/test_sparse_methods.m
| A	examples/undocumented/matlab_and_octave/tests/test_spec_consensus.m
| A	examples/undocumented/matlab_and_octave/tests/test_subgradsvm.m
| A	examples/undocumented/matlab_and_octave/tests/test_svmlight_libsvm.m
| A	examples/undocumented/matlab_and_octave/tests/test_svrlight_libsvr.m
| A	examples/undocumented/matlab_and_octave/tests/test_tppk.m
| A	examples/undocumented/matlab_and_octave/tests/test_wd_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_wd_linadd.m
| A	examples/undocumented/matlab_and_octave/tests/test_wdocas.m
| A	examples/undocumented/matlab_and_octave/tests/test_wds_consensus.m
| A	examples/undocumented/matlab_and_octave/tests/test_wds_kernel.m
| A	examples/undocumented/matlab_and_octave/tests/test_wdshift_position_weights.m
| A	examples/undocumented/matlab_and_octave/tests/test_weighted_spectrum.m
| A	examples/undocumented/matlab_and_octave/tools/PCACut.m
| A	examples/undocumented/matlab_and_octave/tools/README
| A	examples/undocumented/matlab_and_octave/tools/calcroc.m
| A	examples/undocumented/matlab_and_octave/tools/calcrocscore.m
| A	examples/undocumented/matlab_and_octave/tools/graph_hmm.m
| A	examples/undocumented/matlab_and_octave/tools/graph_hmm2.m
| A	examples/undocumented/matlab_and_octave/tools/load_matrix.m
| A	examples/undocumented/matlab_and_octave/tools/model_to_graph.m
| A	examples/undocumented/matlab_and_octave/tools/plotroc.m
| A	examples/undocumented/matlab_and_octave/tools/read_feature_matrix.m
| A	examples/undocumented/matlab_and_octave/tools/readroc.m
| A	examples/undocumented/matlab_and_octave/tools/save_as_ascii.m
| A	examples/undocumented/matlab_and_octave/tools/save_as_double.m
| A	examples/undocumented/python_modular/check.sh
| A	examples/undocumented/python_modular/classifier_custom_kernel_modular.py
| A	examples/undocumented/python_modular/classifier_domainadaptationsvm_modular.py
| A	examples/undocumented/python_modular/classifier_gmnpsvm_modular.py
| A	examples/undocumented/python_modular/classifier_gpbtsvm_modular.py
| A	examples/undocumented/python_modular/classifier_knn_modular.py
| A	examples/undocumented/python_modular/classifier_larank_modular.py
| A	examples/undocumented/python_modular/classifier_lda_modular.py
| A	examples/undocumented/python_modular/classifier_liblinear_modular.py
| A	examples/undocumented/python_modular/classifier_libsvm_minimal_modular.py
| A	examples/undocumented/python_modular/classifier_libsvm_modular.py
| A	examples/undocumented/python_modular/classifier_libsvmmulticlass_modular.py
| A	examples/undocumented/python_modular/classifier_libsvmoneclass_modular.py
| A	examples/undocumented/python_modular/classifier_mpdsvm_modular.py
| A	examples/undocumented/python_modular/classifier_perceptron_modular.py
| A	examples/undocumented/python_modular/classifier_subgradientsvm_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_batch_linadd_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_linear_term_modular.py
| A	examples/undocumented/python_modular/classifier_svmlight_modular.py
| A	examples/undocumented/python_modular/classifier_svmlin_modular.py
| A	examples/undocumented/python_modular/classifier_svmocas_modular.py
| A	examples/undocumented/python_modular/classifier_svmsgd_modular.py
| A	examples/undocumented/python_modular/clustering_hierarchical_modular.py
| A	examples/undocumented/python_modular/clustering_kmeans_modular.py
| A	examples/undocumented/python_modular/distance_braycurtis_modular.py
| A	examples/undocumented/python_modular/distance_canberra_modular.py
| A	examples/undocumented/python_modular/distance_canberraword_modular.py
| A	examples/undocumented/python_modular/distance_chebyshew_modular.py
| A	examples/undocumented/python_modular/distance_chisquare_modular.py
| A	examples/undocumented/python_modular/distance_cosine_modular.py
| A	examples/undocumented/python_modular/distance_euclidian_modular.py
| A	examples/undocumented/python_modular/distance_geodesic_modular.py
| A	examples/undocumented/python_modular/distance_hammingword_modular.py
| A	examples/undocumented/python_modular/distance_jensen_modular.py
| A	examples/undocumented/python_modular/distance_manhatten_modular.py
| A	examples/undocumented/python_modular/distance_manhattenword_modular.py
| A	examples/undocumented/python_modular/distance_minkowski_modular.py
| A	examples/undocumented/python_modular/distance_normsquared_modular.py
| A	examples/undocumented/python_modular/distance_sparseeuclidean_modular.py
| A	examples/undocumented/python_modular/distance_tanimoto_modular.py
| A	examples/undocumented/python_modular/distribution_histogram_modular.py
| A	examples/undocumented/python_modular/distribution_hmm_modular.py
| A	examples/undocumented/python_modular/distribution_linear_hmm_modular.py
| A	examples/undocumented/python_modular/features_read_svmlight_format_modular.py
| A	examples/undocumented/python_modular/features_simple_byte_modular.py
| A	examples/undocumented/python_modular/features_simple_longint_modular.py
| A	examples/undocumented/python_modular/features_simple_modular.py
| A	examples/undocumented/python_modular/features_simple_real_modular.py
| A	examples/undocumented/python_modular/features_sparse_modular.py
| A	examples/undocumented/python_modular/features_string_char_compressed_modular.py
| A	examples/undocumented/python_modular/features_string_char_modular.py
| A	examples/undocumented/python_modular/features_string_file_char_modular.py
| A	examples/undocumented/python_modular/features_string_file_modular.py
| A	examples/undocumented/python_modular/features_string_sliding_window_modular.py
| A	examples/undocumented/python_modular/features_string_ulong_modular.py
| A	examples/undocumented/python_modular/features_string_word_modular.py
| A	examples/undocumented/python_modular/graphical/all_evaluation.py
| A	examples/undocumented/python_modular/graphical/krr.py
| A	examples/undocumented/python_modular/graphical/krr_sinc.py
| A	examples/undocumented/python_modular/graphical/lda.py
| A	examples/undocumented/python_modular/graphical/multiple_smvs.py
| A	examples/undocumented/python_modular/graphical/svm.py
| A	examples/undocumented/python_modular/graphical/svmlin.py
| A	examples/undocumented/python_modular/graphical/svr_sinc.py
| A	examples/undocumented/python_modular/graphical/util.py
| A	examples/undocumented/python_modular/hashed_wd_features_modular.py
| A	examples/undocumented/python_modular/kernel_auc_modular.py
| A	examples/undocumented/python_modular/kernel_chi2_modular.py
| A	examples/undocumented/python_modular/kernel_combined_custom_poly_modular.py
| A	examples/undocumented/python_modular/kernel_combined_modular.py
| A	examples/undocumented/python_modular/kernel_comm_ulong_string_modular.py
| A	examples/undocumented/python_modular/kernel_comm_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_const_modular.py
| A	examples/undocumented/python_modular/kernel_custom_modular.py
| A	examples/undocumented/python_modular/kernel_diag_modular.py
| A	examples/undocumented/python_modular/kernel_distance_modular.py
| A	examples/undocumented/python_modular/kernel_fisher_modular.py
| A	examples/undocumented/python_modular/kernel_fixed_degree_string_modular.py
| A	examples/undocumented/python_modular/kernel_gaussian_modular.py
| A	examples/undocumented/python_modular/kernel_gaussian_shift_modular.py
| A	examples/undocumented/python_modular/kernel_histogram_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_linear_byte_modular.py
| A	examples/undocumented/python_modular/kernel_linear_modular.py
| A	examples/undocumented/python_modular/kernel_linear_string_modular.py
| A	examples/undocumented/python_modular/kernel_linear_word_modular.py
| A	examples/undocumented/python_modular/kernel_local_alignment_string_modular.py
| A	examples/undocumented/python_modular/kernel_locality_improved_string_modular.py
| A	examples/undocumented/python_modular/kernel_match_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_oligo_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_match_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_match_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_poly_modular.py
| A	examples/undocumented/python_modular/kernel_salzberg_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_sigmoid_modular.py
| A	examples/undocumented/python_modular/kernel_simple_locality_improved_string_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_gaussian_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_linear_modular.py
| A	examples/undocumented/python_modular/kernel_sparse_poly_modular.py
| A	examples/undocumented/python_modular/kernel_top_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_comm_word_string_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_degree_position_string_modular.py
| A	examples/undocumented/python_modular/kernel_weighted_degree_string_modular.py
| A	examples/undocumented/python_modular/mkl_binclass_modular.py
| A	examples/undocumented/python_modular/mkl_multiclass_modular.py
| A	examples/undocumented/python_modular/preproc_logplusone_modular.py
| A	examples/undocumented/python_modular/preproc_normone_modular.py
| A	examples/undocumented/python_modular/preproc_prunevarsubmean_modular.py
| A	examples/undocumented/python_modular/preproc_sortulongstring_modular.py
| A	examples/undocumented/python_modular/preproc_sortwordstring_modular.py
| A	examples/undocumented/python_modular/regression_krr_modular.py
| A	examples/undocumented/python_modular/regression_libsvr_modular.py
| A	examples/undocumented/python_modular/regression_svrlight_modular.py
| A	examples/undocumented/python_modular/serialization_svmlight_modular.py
| A	examples/undocumented/python_modular/structure_dynprog_modular.py
| A	examples/undocumented/python_modular/tests_check_commwordkernel_memleak_modular.py
| A	examples/undocumented/python_modular/tools/__init__.py
| A	examples/undocumented/python_modular/tools/load.py
|  
* commit 2af0eb2be648de013d29bbea8043f814f4f1c6bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 11:14:58 2010 +0000
| 
|     fix doc gen
| 
| M	examples/Makefile
| M	examples/generate_documented.sh
|  
* commit c85966c51cc464932e6f6fe5f1beae96cb10041f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 10:54:43 2010 +0000
| 
|     add symlinks
| 
| A	examples/documented/data
| A	examples/documented/matlab
| A	examples/documented/octave
|  
* commit e1eb09d75fc284bc5608395b4ac019c70446c86b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 12 10:10:18 2010 +0000
| 
|     move data directory to trunk and move examples into documented and undocumented
| 
| A	data/DynProg_example.dat
| A	data/DynProg_example_py.dat.mat
| A	data/fm_test_byte.dat
| A	data/fm_test_cube.dat
| A	data/fm_test_dna.dat
| A	data/fm_test_real.dat
| A	data/fm_test_sparsereal.dat
| A	data/fm_test_word.dat
| A	data/fm_train_byte.dat
| A	data/fm_train_cube.dat
| A	data/fm_train_dna.dat
| A	data/fm_train_real.dat
| A	data/fm_train_sparsereal.dat
| A	data/fm_train_word.dat
| A	data/label_train_dna.dat
| A	data/label_train_dna42.dat
| A	data/label_train_multiclass.dat
| A	data/label_train_twoclass.dat
| A	data/train_sparsereal.light
| A	examples/Makefile
| A	examples/README
| D	examples/cmdline/check.sh
| D	examples/cmdline/classifier_gmnpsvm.sg
| D	examples/cmdline/classifier_gpbtsvm.sg
| D	examples/cmdline/classifier_knn.sg
| D	examples/cmdline/classifier_lda.sg
| D	examples/cmdline/classifier_liblinear.sg
| D	examples/cmdline/classifier_libsvm.sg
| D	examples/cmdline/classifier_libsvmmulticlass.sg
| D	examples/cmdline/classifier_libsvmoneclass.sg
| D	examples/cmdline/classifier_mpd.sg
| D	examples/cmdline/classifier_perceptron.sg
| D	examples/cmdline/classifier_subgradientsvm.sg
| D	examples/cmdline/classifier_svmlight.sg
| D	examples/cmdline/classifier_svmlin.sg
| D	examples/cmdline/classifier_svmocas.sg
| D	examples/cmdline/classifier_svmsgd.sg
| D	examples/cmdline/clustering_hierarchical.sg
| D	examples/cmdline/clustering_kmeans.sg
| D	examples/cmdline/distance_braycurtis.sg
| D	examples/cmdline/distance_canberra.sg
| D	examples/cmdline/distance_canberraword.sg
| D	examples/cmdline/distance_chebyshew.sg
| D	examples/cmdline/distance_chisquare.sg
| D	examples/cmdline/distance_cosine.sg
| D	examples/cmdline/distance_euclidean.sg
| D	examples/cmdline/distance_geodesic.sg
| D	examples/cmdline/distance_hammingword.sg
| D	examples/cmdline/distance_jensen.sg
| D	examples/cmdline/distance_manhatten.sg
| D	examples/cmdline/distance_manhattenword.sg
| D	examples/cmdline/distance_minkowski.sg
| D	examples/cmdline/distance_tanimoto.sg
| D	examples/cmdline/distribution_histogram.sg
| D	examples/cmdline/distribution_hmm.sg
| D	examples/cmdline/distribution_linearhmm.sg
| D	examples/cmdline/kernel_chi2.sg
| D	examples/cmdline/kernel_combined.sg
| D	examples/cmdline/kernel_commulongstring.sg
| D	examples/cmdline/kernel_commwordstring.sg
| D	examples/cmdline/kernel_const.sg
| D	examples/cmdline/kernel_diag.sg
| D	examples/cmdline/kernel_distancetokernel.sg
| D	examples/cmdline/kernel_fixeddegreestring.sg
| D	examples/cmdline/kernel_gaussian.sg
| D	examples/cmdline/kernel_gaussianshift.sg
| D	examples/cmdline/kernel_linear.sg
| D	examples/cmdline/kernel_linearbyte.sg
| D	examples/cmdline/kernel_linearstring.sg
| D	examples/cmdline/kernel_linearword.sg
| D	examples/cmdline/kernel_localalignmentstring.sg
| D	examples/cmdline/kernel_localityimprovedstring.sg
| D	examples/cmdline/kernel_oligostring.sg
| D	examples/cmdline/kernel_poly.sg
| D	examples/cmdline/kernel_polymatchstring.sg
| D	examples/cmdline/kernel_polymatchword.sg
| D	examples/cmdline/kernel_sigmoid.sg
| D	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| D	examples/cmdline/kernel_sparse_linear.sg
| D	examples/cmdline/kernel_sparsegaussian.sg
| D	examples/cmdline/kernel_sparsepoly.sg
| D	examples/cmdline/kernel_top.sg
| D	examples/cmdline/kernel_weightedcommwordstring.sg
| D	examples/cmdline/kernel_weighteddegreepositionstring.sg
| D	examples/cmdline/kernel_weighteddegreestring.sg
| D	examples/cmdline/mkl_multiclass.sg
| D	examples/cmdline/preproc_logplusone.sg
| D	examples/cmdline/preproc_normone.sg
| D	examples/cmdline/preproc_prunevarsubmean.sg
| D	examples/cmdline/preproc_sortulongstring.sg
| D	examples/cmdline/preproc_sortwordstring.sg
| D	examples/cmdline/regression_krr.sg
| D	examples/cmdline/regression_libsvr.sg
| D	examples/cmdline/regression_svrlight.sg
| D	examples/data/DynProg_example.dat
| D	examples/data/DynProg_example_py.dat.mat
| D	examples/data/fm_test_byte.dat
| D	examples/data/fm_test_cube.dat
| D	examples/data/fm_test_dna.dat
| D	examples/data/fm_test_real.dat
| D	examples/data/fm_test_sparsereal.dat
| D	examples/data/fm_test_word.dat
| D	examples/data/fm_train_byte.dat
| D	examples/data/fm_train_cube.dat
| D	examples/data/fm_train_dna.dat
| D	examples/data/fm_train_real.dat
| D	examples/data/fm_train_sparsereal.dat
| D	examples/data/fm_train_word.dat
| D	examples/data/label_train_dna.dat
| D	examples/data/label_train_dna42.dat
| D	examples/data/label_train_multiclass.dat
| D	examples/data/label_train_twoclass.dat
| D	examples/data/train_sparsereal.light
| D	examples/elwms/foo.R
| D	examples/elwms/octave_matplotlib.m
| D	examples/elwms/octave_to_python.m
| D	examples/elwms/octave_to_r.m
| D	examples/elwms/python_to_octave.py
| D	examples/elwms/r_to_octave.m
| D	examples/elwms/r_to_python.R
| A	examples/generate_documented.sh
| D	examples/libshogun/Makefile
| D	examples/libshogun/README
| D	examples/libshogun/basic_minimal.cpp
| D	examples/libshogun/classifier_libsvm.cpp
| D	examples/libshogun/classifier_minimal_svm.cpp
| D	examples/libshogun/classifier_mklmulticlass.cpp
| D	examples/libshogun/kernel_gaussian.cpp
| D	examples/libshogun/kernel_revlin.cpp
| D	examples/libshogun/library_dyn_int.cpp
| D	examples/libshogun/library_gc_array.cpp
| D	examples/libshogun/library_hash.cpp
| D	examples/libshogun/library_indirect_object.cpp
| D	examples/matlab
| D	examples/matlab_and_octave/check.sh
| D	examples/matlab_and_octave/classifier_gmnpsvm.m
| D	examples/matlab_and_octave/classifier_gpbtsvm.m
| D	examples/matlab_and_octave/classifier_knn.m
| D	examples/matlab_and_octave/classifier_lda.m
| D	examples/matlab_and_octave/classifier_liblinear.m
| D	examples/matlab_and_octave/classifier_liblinear_objective.m
| D	examples/matlab_and_octave/classifier_libsvm.m
| D	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| D	examples/matlab_and_octave/classifier_libsvmoneclass.m
| D	examples/matlab_and_octave/classifier_lpboost.m
| D	examples/matlab_and_octave/classifier_lpm.m
| D	examples/matlab_and_octave/classifier_mpdsvm.m
| D	examples/matlab_and_octave/classifier_perceptron.m
| D	examples/matlab_and_octave/classifier_subgradientsvm.m
| D	examples/matlab_and_octave/classifier_svmlight.m
| D	examples/matlab_and_octave/classifier_svmlight_wdkernel.m
| D	examples/matlab_and_octave/classifier_svmlight_wds_batch.m
| D	examples/matlab_and_octave/classifier_svmlin.m
| D	examples/matlab_and_octave/classifier_svmocas.m
| D	examples/matlab_and_octave/classifier_svmocas_objective.m
| D	examples/matlab_and_octave/classifier_svmsgd.m
| D	examples/matlab_and_octave/classifier_svmsgd_objective.m
| D	examples/matlab_and_octave/clustering_hierarchical.m
| D	examples/matlab_and_octave/clustering_kmeans.m
| D	examples/matlab_and_octave/distance_braycurtis.m
| D	examples/matlab_and_octave/distance_canberra.m
| D	examples/matlab_and_octave/distance_canberraword.m
| D	examples/matlab_and_octave/distance_chebyshew.m
| D	examples/matlab_and_octave/distance_chisquare.m
| D	examples/matlab_and_octave/distance_cosine.m
| D	examples/matlab_and_octave/distance_euclidian.m
| D	examples/matlab_and_octave/distance_geodesic.m
| D	examples/matlab_and_octave/distance_hammingword.m
| D	examples/matlab_and_octave/distance_jensen.m
| D	examples/matlab_and_octave/distance_manhatten.m
| D	examples/matlab_and_octave/distance_manhattenword.m
| D	examples/matlab_and_octave/distance_minkowski.m
| D	examples/matlab_and_octave/distance_tanimoto.m
| D	examples/matlab_and_octave/distribution_histogram.m
| D	examples/matlab_and_octave/distribution_hmm.m
| D	examples/matlab_and_octave/distribution_linearhmm.m
| D	examples/matlab_and_octave/distribution_markovchain.m
| D	examples/matlab_and_octave/features_dot_polynomial.m
| D	examples/matlab_and_octave/features_dot_wdfeatures.m
| D	examples/matlab_and_octave/features_dot_weightedspec.m
| D	examples/matlab_and_octave/features_string.m
| D	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| D	examples/matlab_and_octave/graphical/cluster_kmeans.m
| D	examples/matlab_and_octave/graphical/entropy.m
| D	examples/matlab_and_octave/graphical/hmm.m
| D	examples/matlab_and_octave/graphical/lda_classification.m
| D	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| D	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| D	examples/matlab_and_octave/graphical/spec_interp.m
| D	examples/matlab_and_octave/graphical/svm_classification.m
| D	examples/matlab_and_octave/graphical/svm_multiclass.m
| D	examples/matlab_and_octave/graphical/svr_regression.m
| D	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| D	examples/matlab_and_octave/graphical/test_poim_wds.m
| D	examples/matlab_and_octave/graphical/test_regression.m
| D	examples/matlab_and_octave/graphical/test_regression_mkl.m
| D	examples/matlab_and_octave/graphical/test_spec_interp.m
| D	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| D	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| D	examples/matlab_and_octave/graphical/wds_consensus.m
| D	examples/matlab_and_octave/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/kernels_chi2.m
| D	examples/matlab_and_octave/kernels_combined.m
| D	examples/matlab_and_octave/kernels_commulongstring.m
| D	examples/matlab_and_octave/kernels_commwordstring.m
| D	examples/matlab_and_octave/kernels_const.m
| D	examples/matlab_and_octave/kernels_custom.m
| D	examples/matlab_and_octave/kernels_diag.m
| D	examples/matlab_and_octave/kernels_distance.m
| D	examples/matlab_and_octave/kernels_fixeddegreestring.m
| D	examples/matlab_and_octave/kernels_gaussian.m
| D	examples/matlab_and_octave/kernels_gaussianshift.m
| D	examples/matlab_and_octave/kernels_histogramword.m
| D	examples/matlab_and_octave/kernels_lik.m
| D	examples/matlab_and_octave/kernels_linear.m
| D	examples/matlab_and_octave/kernels_linearbyte.m
| D	examples/matlab_and_octave/kernels_linearstring.m
| D	examples/matlab_and_octave/kernels_linearword.m
| D	examples/matlab_and_octave/kernels_localalignmentstring.m
| D	examples/matlab_and_octave/kernels_localityimprovedstring.m
| D	examples/matlab_and_octave/kernels_oligostring.m
| D	examples/matlab_and_octave/kernels_poly.m
| D	examples/matlab_and_octave/kernels_polymatchstring.m
| D	examples/matlab_and_octave/kernels_polymatchword.m
| D	examples/matlab_and_octave/kernels_sigmoid.m
| D	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| D	examples/matlab_and_octave/kernels_sparsegaussian.m
| D	examples/matlab_and_octave/kernels_sparselinear.m
| D	examples/matlab_and_octave/kernels_sparsepoly.m
| D	examples/matlab_and_octave/kernels_spectrum.m
| D	examples/matlab_and_octave/kernels_weighted_spec.m
| D	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| D	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| D	examples/matlab_and_octave/kernels_weighteddegreestring.m
| D	examples/matlab_and_octave/mkl_classify_christmas_star.m
| D	examples/matlab_and_octave/mkl_multiclass.m
| D	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| D	examples/matlab_and_octave/mkl_regression_sine.m
| D	examples/matlab_and_octave/preproc_logplusone.m
| D	examples/matlab_and_octave/preproc_normone.m
| D	examples/matlab_and_octave/preproc_prunevarsubmean.m
| D	examples/matlab_and_octave/preproc_sortulongstring.m
| D	examples/matlab_and_octave/preproc_sortwordstring.m
| D	examples/matlab_and_octave/regression_krr.m
| D	examples/matlab_and_octave/regression_libsvr.m
| D	examples/matlab_and_octave/regression_svrlight.m
| D	examples/matlab_and_octave/structure_dynprog.m
| D	examples/matlab_and_octave/tests/test_classifier.m
| D	examples/matlab_and_octave/tests/test_combined.m
| D	examples/matlab_and_octave/tests/test_combined2.m
| D	examples/matlab_and_octave/tests/test_complex_scenario.m
| D	examples/matlab_and_octave/tests/test_custom_kernel.m
| D	examples/matlab_and_octave/tests/test_interface.m
| D	examples/matlab_and_octave/tests/test_kernel_optimization.m
| D	examples/matlab_and_octave/tests/test_knn.m
| D	examples/matlab_and_octave/tests/test_l2svm.m
| D	examples/matlab_and_octave/tests/test_linadd.m
| D	examples/matlab_and_octave/tests/test_linear_methods.m
| D	examples/matlab_and_octave/tests/test_mkl.m
| D	examples/matlab_and_octave/tests/test_mkl_svr.m
| D	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| D	examples/matlab_and_octave/tests/test_ocas_normalization.m
| D	examples/matlab_and_octave/tests/test_one_class_svm.m
| D	examples/matlab_and_octave/tests/test_regression_linadd.m
| D	examples/matlab_and_octave/tests/test_sliding_window.m
| D	examples/matlab_and_octave/tests/test_sparse.m
| D	examples/matlab_and_octave/tests/test_sparse_methods.m
| D	examples/matlab_and_octave/tests/test_spec_consensus.m
| D	examples/matlab_and_octave/tests/test_subgradsvm.m
| D	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| D	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| D	examples/matlab_and_octave/tests/test_tppk.m
| D	examples/matlab_and_octave/tests/test_wd_kernel.m
| D	examples/matlab_and_octave/tests/test_wd_linadd.m
| D	examples/matlab_and_octave/tests/test_wdocas.m
| D	examples/matlab_and_octave/tests/test_wds_consensus.m
| D	examples/matlab_and_octave/tests/test_wds_kernel.m
| D	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| D	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| D	examples/matlab_and_octave/tools/PCACut.m
| D	examples/matlab_and_octave/tools/README
| D	examples/matlab_and_octave/tools/calcroc.m
| D	examples/matlab_and_octave/tools/calcrocscore.m
| D	examples/matlab_and_octave/tools/graph_hmm.m
| D	examples/matlab_and_octave/tools/graph_hmm2.m
| D	examples/matlab_and_octave/tools/load_matrix.m
| D	examples/matlab_and_octave/tools/model_to_graph.m
| D	examples/matlab_and_octave/tools/plotroc.m
| D	examples/matlab_and_octave/tools/read_feature_matrix.m
| D	examples/matlab_and_octave/tools/readroc.m
| D	examples/matlab_and_octave/tools/save_as_ascii.m
| D	examples/matlab_and_octave/tools/save_as_double.m
| D	examples/octave
| D	examples/octave_modular/check.sh
| D	examples/octave_modular/classifier_domainadaptationsvm_modular.m
| D	examples/octave_modular/classifier_gmnpsvm_modular.m
| D	examples/octave_modular/classifier_gpbtsvm_modular.m
| D	examples/octave_modular/classifier_knn_modular.m
| D	examples/octave_modular/classifier_lda_modular.m
| D	examples/octave_modular/classifier_liblinear_modular.m
| D	examples/octave_modular/classifier_libsvm_minimal_modular.m
| D	examples/octave_modular/classifier_libsvm_modular.m
| D	examples/octave_modular/classifier_libsvmmulticlass_modular.m
| D	examples/octave_modular/classifier_libsvmoneclass_modular.m
| D	examples/octave_modular/classifier_mpdsvm_modular.m
| D	examples/octave_modular/classifier_perceptron_modular.m
| D	examples/octave_modular/classifier_subgradientsvm_modular.m
| D	examples/octave_modular/classifier_svmlight_modular.m
| D	examples/octave_modular/classifier_svmlin_modular.m
| D	examples/octave_modular/classifier_svmocas_modular.m
| D	examples/octave_modular/classifier_svmsgd_modular.m
| D	examples/octave_modular/clustering_hierarchical_modular.m
| D	examples/octave_modular/clustering_kmeans_modular.m
| D	examples/octave_modular/distance_braycurtis_modular.m
| D	examples/octave_modular/distance_canberra_modular.m
| D	examples/octave_modular/distance_canberraword_modular.m
| D	examples/octave_modular/distance_chebyshew_modular.m
| D	examples/octave_modular/distance_chisquare_modular.m
| D	examples/octave_modular/distance_cosine_modular.m
| D	examples/octave_modular/distance_euclidian_modular.m
| D	examples/octave_modular/distance_geodesic_modular.m
| D	examples/octave_modular/distance_hammingword_modular.m
| D	examples/octave_modular/distance_jensen_modular.m
| D	examples/octave_modular/distance_manhatten_modular.m
| D	examples/octave_modular/distance_manhattenword_modular.m
| D	examples/octave_modular/distance_minkowski_modular.m
| D	examples/octave_modular/distance_sparseeuclidian_modular.m
| D	examples/octave_modular/distance_tanimoto_modular.m
| D	examples/octave_modular/distribution_histogram_modular.m
| D	examples/octave_modular/distribution_hmm_modular.m
| D	examples/octave_modular/distribution_linearhmm_modular.m
| D	examples/octave_modular/kernel_auc_modular.m
| D	examples/octave_modular/kernel_chi2_modular.m
| D	examples/octave_modular/kernel_combined_modular.m
| D	examples/octave_modular/kernel_commulongstring_modular.m
| D	examples/octave_modular/kernel_commwordstring_modular.m
| D	examples/octave_modular/kernel_const_modular.m
| D	examples/octave_modular/kernel_custom_modular.m
| D	examples/octave_modular/kernel_diag_modular.m
| D	examples/octave_modular/kernel_distance_modular.m
| D	examples/octave_modular/kernel_fixeddegreestring_modular.m
| D	examples/octave_modular/kernel_gaussian_modular.m
| D	examples/octave_modular/kernel_gaussianshift_modular.m
| D	examples/octave_modular/kernel_histogram_modular.m
| D	examples/octave_modular/kernel_linear_modular.m
| D	examples/octave_modular/kernel_linearbyte_modular.m
| D	examples/octave_modular/kernel_linearstring_modular.m
| D	examples/octave_modular/kernel_linearword_modular.m
| D	examples/octave_modular/kernel_localalignmentstring_modular.m
| D	examples/octave_modular/kernel_localityimprovedstring_modular.m
| D	examples/octave_modular/kernel_matchwordstring_modular.m
| D	examples/octave_modular/kernel_oligostring_modular.m
| D	examples/octave_modular/kernel_poly_modular.m
| D	examples/octave_modular/kernel_polymatchstring_modular.m
| D	examples/octave_modular/kernel_polymatchwordstring_modular.m
| D	examples/octave_modular/kernel_sigmoid_modular.m
| D	examples/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| D	examples/octave_modular/kernel_sparsegaussian_modular.m
| D	examples/octave_modular/kernel_sparselinear_modular.m
| D	examples/octave_modular/kernel_sparsepoly_modular.m
| D	examples/octave_modular/kernel_top_modular.m
| D	examples/octave_modular/kernel_weightedcommwordstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreepositionstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreestring_modular.m
| D	examples/octave_modular/mkl_multiclass_modular.m
| D	examples/octave_modular/preproc_commulongstring_modular.m
| D	examples/octave_modular/preproc_commwordstring_modular.m
| D	examples/octave_modular/preproc_logplusone_modular.m
| D	examples/octave_modular/preproc_normone_modular.m
| D	examples/octave_modular/preproc_prunevarsubmean_modular.m
| D	examples/octave_modular/regression_krr_modular.m
| D	examples/octave_modular/regression_libsvr_modular.m
| D	examples/octave_modular/regression_svrlight_modular.m
| D	examples/octave_modular/tools/load_matrix.m
| D	examples/python/check.sh
| D	examples/python/classifier_gmnpsvm.py
| D	examples/python/classifier_gpbtsvm.py
| D	examples/python/classifier_knn.py
| D	examples/python/classifier_lda.py
| D	examples/python/classifier_libsvm.py
| D	examples/python/classifier_libsvmmulticlass.py
| D	examples/python/classifier_libsvmoneclass.py
| D	examples/python/classifier_mpdsvm.py
| D	examples/python/classifier_perceptron.py
| D	examples/python/classifier_svmlight.py
| D	examples/python/clustering_hierarchical.py
| D	examples/python/clustering_kmeans.py
| D	examples/python/distance_braycurtis.py
| D	examples/python/distance_canberra.py
| D	examples/python/distance_canberraword.py
| D	examples/python/distance_chebyshew.py
| D	examples/python/distance_chisquare.py
| D	examples/python/distance_cosine.py
| D	examples/python/distance_euclidian.py
| D	examples/python/distance_geodesic.py
| D	examples/python/distance_hammingword.py
| D	examples/python/distance_jensen.py
| D	examples/python/distance_manhatten.py
| D	examples/python/distance_manhattenword.py
| D	examples/python/distance_minkowski.py
| D	examples/python/distance_tanimoto.py
| D	examples/python/distribution_histogram.py
| D	examples/python/distribution_hmm.py
| D	examples/python/distribution_linearhmm.py
| D	examples/python/graphical/svm_classification.py
| D	examples/python/graphical/svr_regression.py
| D	examples/python/graphical/util.py
| D	examples/python/kernel_chi2.py
| D	examples/python/kernel_combined.py
| D	examples/python/kernel_commulongstring.py
| D	examples/python/kernel_commwordstring.py
| D	examples/python/kernel_const.py
| D	examples/python/kernel_diag.py
| D	examples/python/kernel_distancetokernel.py
| D	examples/python/kernel_fixeddegreestring.py
| D	examples/python/kernel_gaussian.py
| D	examples/python/kernel_gaussianshift.py
| D	examples/python/kernel_linear.py
| D	examples/python/kernel_linear_string.py
| D	examples/python/kernel_linearbyte.py
| D	examples/python/kernel_linearword.py
| D	examples/python/kernel_localalignmentstring.py
| D	examples/python/kernel_localityimprovedstring.py
| D	examples/python/kernel_oligostring.py
| D	examples/python/kernel_pluginestimatehistogram.py
| D	examples/python/kernel_poly.py
| D	examples/python/kernel_polymatchstring.py
| D	examples/python/kernel_polymatchword.py
| D	examples/python/kernel_salzbergstring.py
| D	examples/python/kernel_sigmoid.py
| D	examples/python/kernel_simplelocalityimprovedstring.py
| D	examples/python/kernel_weightedcommwordstring.py
| D	examples/python/kernel_weighteddegreepositionstring.py
| D	examples/python/kernel_weighteddegreestring.py
| D	examples/python/mkl_multiclass.py
| D	examples/python/mkl_regression.py
| D	examples/python/mkl_twoclass.py
| D	examples/python/preproc_logplusone.py
| D	examples/python/preproc_normone.py
| D	examples/python/preproc_prunevarsubmean.py
| D	examples/python/preproc_sortulongstring.py
| D	examples/python/preproc_sortwordstring.py
| D	examples/python/regression_krr.py
| D	examples/python/regression_libsvr.py
| D	examples/python/regression_svrlight.py
| D	examples/python/tools/__init__.py
| D	examples/python/tools/load.py
| D	examples/python_modular/check.sh
| D	examples/python_modular/classifier_custom_kernel_modular.py
| D	examples/python_modular/classifier_domainadaptationsvm_modular.py
| D	examples/python_modular/classifier_gmnpsvm_modular.py
| D	examples/python_modular/classifier_gpbtsvm_modular.py
| D	examples/python_modular/classifier_knn_modular.py
| D	examples/python_modular/classifier_larank_modular.py
| D	examples/python_modular/classifier_lda_modular.py
| D	examples/python_modular/classifier_liblinear_modular.py
| D	examples/python_modular/classifier_libsvm_minimal_modular.py
| D	examples/python_modular/classifier_libsvm_modular.py
| D	examples/python_modular/classifier_libsvmmulticlass_modular.py
| D	examples/python_modular/classifier_libsvmoneclass_modular.py
| D	examples/python_modular/classifier_mpdsvm_modular.py
| D	examples/python_modular/classifier_perceptron_modular.py
| D	examples/python_modular/classifier_subgradientsvm_modular.py
| D	examples/python_modular/classifier_svmlight_batch_linadd_modular.py
| D	examples/python_modular/classifier_svmlight_linear_term_modular.py
| D	examples/python_modular/classifier_svmlight_modular.py
| D	examples/python_modular/classifier_svmlin_modular.py
| D	examples/python_modular/classifier_svmocas_modular.py
| D	examples/python_modular/classifier_svmsgd_modular.py
| D	examples/python_modular/clustering_hierarchical_modular.py
| D	examples/python_modular/clustering_kmeans_modular.py
| D	examples/python_modular/distance_braycurtis_modular.py
| D	examples/python_modular/distance_canberra_modular.py
| D	examples/python_modular/distance_canberraword_modular.py
| D	examples/python_modular/distance_chebyshew_modular.py
| D	examples/python_modular/distance_chisquare_modular.py
| D	examples/python_modular/distance_cosine_modular.py
| D	examples/python_modular/distance_euclidian_modular.py
| D	examples/python_modular/distance_geodesic_modular.py
| D	examples/python_modular/distance_hammingword_modular.py
| D	examples/python_modular/distance_jensen_modular.py
| D	examples/python_modular/distance_manhatten_modular.py
| D	examples/python_modular/distance_manhattenword_modular.py
| D	examples/python_modular/distance_minkowski_modular.py
| D	examples/python_modular/distance_normsquared_modular.py
| D	examples/python_modular/distance_sparseeuclidean_modular.py
| D	examples/python_modular/distance_tanimoto_modular.py
| D	examples/python_modular/distribution_histogram_modular.py
| D	examples/python_modular/distribution_hmm_modular.py
| D	examples/python_modular/distribution_linear_hmm_modular.py
| D	examples/python_modular/features_read_svmlight_format_modular.py
| D	examples/python_modular/features_simple_byte_modular.py
| D	examples/python_modular/features_simple_longint_modular.py
| D	examples/python_modular/features_simple_modular.py
| D	examples/python_modular/features_simple_real_modular.py
| D	examples/python_modular/features_sparse_modular.py
| D	examples/python_modular/features_string_char_compressed_modular.py
| D	examples/python_modular/features_string_char_modular.py
| D	examples/python_modular/features_string_file_char_modular.py
| D	examples/python_modular/features_string_file_modular.py
| D	examples/python_modular/features_string_sliding_window_modular.py
| D	examples/python_modular/features_string_ulong_modular.py
| D	examples/python_modular/features_string_word_modular.py
| D	examples/python_modular/graphical/all_evaluation.py
| D	examples/python_modular/graphical/krr.py
| D	examples/python_modular/graphical/krr_sinc.py
| D	examples/python_modular/graphical/lda.py
| D	examples/python_modular/graphical/multiple_smvs.py
| D	examples/python_modular/graphical/svm.py
| D	examples/python_modular/graphical/svmlin.py
| D	examples/python_modular/graphical/svr_sinc.py
| D	examples/python_modular/graphical/util.py
| D	examples/python_modular/hashed_wd_features_modular.py
| D	examples/python_modular/kernel_auc_modular.py
| D	examples/python_modular/kernel_chi2_modular.py
| D	examples/python_modular/kernel_combined_custom_poly_modular.py
| D	examples/python_modular/kernel_combined_modular.py
| D	examples/python_modular/kernel_comm_ulong_string_modular.py
| D	examples/python_modular/kernel_comm_word_string_modular.py
| D	examples/python_modular/kernel_const_modular.py
| D	examples/python_modular/kernel_custom_modular.py
| D	examples/python_modular/kernel_diag_modular.py
| D	examples/python_modular/kernel_distance_modular.py
| D	examples/python_modular/kernel_fisher_modular.py
| D	examples/python_modular/kernel_fixed_degree_string_modular.py
| D	examples/python_modular/kernel_gaussian_modular.py
| D	examples/python_modular/kernel_gaussian_shift_modular.py
| D	examples/python_modular/kernel_histogram_word_string_modular.py
| D	examples/python_modular/kernel_linear_byte_modular.py
| D	examples/python_modular/kernel_linear_modular.py
| D	examples/python_modular/kernel_linear_string_modular.py
| D	examples/python_modular/kernel_linear_word_modular.py
| D	examples/python_modular/kernel_local_alignment_string_modular.py
| D	examples/python_modular/kernel_locality_improved_string_modular.py
| D	examples/python_modular/kernel_match_word_string_modular.py
| D	examples/python_modular/kernel_oligo_string_modular.py
| D	examples/python_modular/kernel_poly_match_string_modular.py
| D	examples/python_modular/kernel_poly_match_word_string_modular.py
| D	examples/python_modular/kernel_poly_modular.py
| D	examples/python_modular/kernel_salzberg_word_string_modular.py
| D	examples/python_modular/kernel_sigmoid_modular.py
| D	examples/python_modular/kernel_simple_locality_improved_string_modular.py
| D	examples/python_modular/kernel_sparse_gaussian_modular.py
| D	examples/python_modular/kernel_sparse_linear_modular.py
| D	examples/python_modular/kernel_sparse_poly_modular.py
| D	examples/python_modular/kernel_top_modular.py
| D	examples/python_modular/kernel_weighted_comm_word_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_position_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_string_modular.py
| D	examples/python_modular/mkl_binclass_modular.py
| D	examples/python_modular/mkl_multiclass_modular.py
| D	examples/python_modular/preproc_logplusone_modular.py
| D	examples/python_modular/preproc_normone_modular.py
| D	examples/python_modular/preproc_prunevarsubmean_modular.py
| D	examples/python_modular/preproc_sortulongstring_modular.py
| D	examples/python_modular/preproc_sortwordstring_modular.py
| D	examples/python_modular/regression_krr_modular.py
| D	examples/python_modular/regression_libsvr_modular.py
| D	examples/python_modular/regression_svrlight_modular.py
| D	examples/python_modular/serialization_svmlight_modular.py
| D	examples/python_modular/structure_dynprog_modular.py
| D	examples/python_modular/tests_check_commwordkernel_memleak_modular.py
| D	examples/python_modular/tools/__init__.py
| D	examples/python_modular/tools/load.py
| D	examples/r/check.sh
| D	examples/r/classifier_gmnpsvm.R
| D	examples/r/classifier_gpbtsvm.R
| D	examples/r/classifier_knn.R
| D	examples/r/classifier_lda.R
| D	examples/r/classifier_libsvm.R
| D	examples/r/classifier_libsvmmulticlass.R
| D	examples/r/classifier_libsvmoneclass.R
| D	examples/r/classifier_mpdsvm.R
| D	examples/r/classifier_perceptron.R
| D	examples/r/classifier_svmlight.R
| D	examples/r/clustering_hierarchical.R
| D	examples/r/clustering_kmeans.R
| D	examples/r/distance_braycurtis.R
| D	examples/r/distance_canberra.R
| D	examples/r/distance_canberraword.R
| D	examples/r/distance_chebyshew.R
| D	examples/r/distance_chisquare.R
| D	examples/r/distance_cosine.R
| D	examples/r/distance_euclidian.R
| D	examples/r/distance_geodesic.R
| D	examples/r/distance_hammingword.R
| D	examples/r/distance_jensen.R
| D	examples/r/distance_manhatten.R
| D	examples/r/distance_manhattenword.R
| D	examples/r/distance_minkowski.R
| D	examples/r/distance_tanimoto.R
| D	examples/r/distribution_histogram.R
| D	examples/r/distribution_hmm.R
| D	examples/r/distribution_linearhmm.R
| D	examples/r/graphical/hmm.R
| D	examples/r/graphical/svm_classification.R
| D	examples/r/graphical/svr_regression.R
| D	examples/r/kernel_chi2.R
| D	examples/r/kernel_combined.R
| D	examples/r/kernel_commulongstring.R
| D	examples/r/kernel_commwordstring.R
| D	examples/r/kernel_const.R
| D	examples/r/kernel_diag.R
| D	examples/r/kernel_distancetokernel.R
| D	examples/r/kernel_fixeddegreestring.R
| D	examples/r/kernel_gaussian.R
| D	examples/r/kernel_gaussianshift.R
| D	examples/r/kernel_histogram.R
| D	examples/r/kernel_linear.R
| D	examples/r/kernel_linearstring.R
| D	examples/r/kernel_localalignmentstring.R
| D	examples/r/kernel_localityimprovedstring.R
| D	examples/r/kernel_oligostring.R
| D	examples/r/kernel_poly.R
| D	examples/r/kernel_polymatchstring.R
| D	examples/r/kernel_sigmoid.R
| D	examples/r/kernel_simplelocalityimprovedstring.R
| D	examples/r/kernel_string.R
| D	examples/r/kernel_weightedcommwordstring.R
| D	examples/r/kernel_weighteddegreepositionstring.R
| D	examples/r/kernel_weighteddegreestring.R
| D	examples/r/mkl_classify_christmas_star.R
| D	examples/r/mkl_multiclass.R
| D	examples/r/mkl_regression_3sine_waves.R
| D	examples/r/mkl_regression_sine.R
| D	examples/r/mkl_wd.R
| D	examples/r/preproc_logplusone.R
| D	examples/r/preproc_normone.R
| D	examples/r/preproc_prunevarsubmean.R
| D	examples/r/preproc_sortulongstring.R
| D	examples/r/preproc_sortwordstring.R
| D	examples/r/regression_krr.R
| D	examples/r/regression_libsvr.R
| D	examples/r/regression_svrlight.R
| D	examples/r_modular/check.sh
| D	examples/r_modular/classifier_gmnpsvm_modular.R
| D	examples/r_modular/classifier_gpbtsvm_modular.R
| D	examples/r_modular/classifier_knn_modular.R
| D	examples/r_modular/classifier_lda_modular.R
| D	examples/r_modular/classifier_liblinear_modular.R
| D	examples/r_modular/classifier_libsvm_modular.R
| D	examples/r_modular/classifier_libsvmmulticlass_modular.R
| D	examples/r_modular/classifier_libsvmoneclass_modular.R
| D	examples/r_modular/classifier_mpdsvm_modular.R
| D	examples/r_modular/classifier_perceptron_modular.R
| D	examples/r_modular/classifier_subgradientsvm_modular.R
| D	examples/r_modular/classifier_svmlight_modular.R
| D	examples/r_modular/classifier_svmlin_modular.R
| D	examples/r_modular/classifier_svmocas_modular.R
| D	examples/r_modular/classifier_svmsgd_modular.R
| D	examples/r_modular/distribution_histogram_modular.R
| D	examples/r_modular/distribution_hmm_modular.R
| D	examples/r_modular/distribution_linearhmm_modular.R
| D	examples/r_modular/kernel_auc_modular.R
| D	examples/r_modular/kernel_chi2_modular.R
| D	examples/r_modular/kernel_combined_modular.R
| D	examples/r_modular/kernel_commulongstring_modular.R
| D	examples/r_modular/kernel_commwordstring_modular.R
| D	examples/r_modular/kernel_const_modular.R
| D	examples/r_modular/kernel_custom_modular.R
| D	examples/r_modular/kernel_diag_modular.R
| D	examples/r_modular/kernel_distancetokernel_modular.R
| D	examples/r_modular/kernel_fixeddegreestring_modular.R
| D	examples/r_modular/kernel_gaussian_modular.R
| D	examples/r_modular/kernel_gaussianshift_modular.R
| D	examples/r_modular/kernel_histogramword_modular.R
| D	examples/r_modular/kernel_linear_modular.R
| D	examples/r_modular/kernel_linearbyte_modular.R
| D	examples/r_modular/kernel_linearstring_modular.R
| D	examples/r_modular/kernel_linearword_modular.R
| D	examples/r_modular/kernel_localalignmentstring_modular.R
| D	examples/r_modular/kernel_localityimprovedstring_modular.R
| D	examples/r_modular/kernel_oligostring_modular.R
| D	examples/r_modular/kernel_poly_modular.R
| D	examples/r_modular/kernel_polymatchstring_modular.R
| D	examples/r_modular/kernel_polymatchword_modular.R
| D	examples/r_modular/kernel_sigmoid_modular.R
| D	examples/r_modular/kernel_simplelocalityimprovedstring_modular.R
| D	examples/r_modular/kernel_sparsegaussian_modular.R
| D	examples/r_modular/kernel_sparselinear_modular.R
| D	examples/r_modular/kernel_sparsepoly_modular.R
| D	examples/r_modular/kernel_topfisher_modular.R
| D	examples/r_modular/kernel_weightedcommwordstring_modular.R
| D	examples/r_modular/kernel_weighteddegreepositionstring_modular.R
| D	examples/r_modular/kernel_weighteddegreestring_modular.R
| D	examples/r_modular/kernel_wordmatch_modular.R
| D	examples/r_modular/mkl_multiclass_modular.R
| D	examples/r_modular/preproc_commulongstring_modular.R
| D	examples/r_modular/preproc_commwordstring_modular.R
| D	examples/r_modular/preproc_logplusone_modular.R
| D	examples/r_modular/preproc_normone_modular.R
| D	examples/r_modular/preproc_prunevarsubmean_modular.R
| A	examples/undocumented/cmdline/check.sh
| A	examples/undocumented/cmdline/classifier_gmnpsvm.sg
| A	examples/undocumented/cmdline/classifier_gpbtsvm.sg
| A	examples/undocumented/cmdline/classifier_knn.sg
| A	examples/undocumented/cmdline/classifier_lda.sg
| A	examples/undocumented/cmdline/classifier_liblinear.sg
| A	examples/undocumented/cmdline/classifier_libsvm.sg
| A	examples/undocumented/cmdline/classifier_libsvmmulticlass.sg
| A	examples/undocumented/cmdline/classifier_libsvmoneclass.sg
| A	examples/undocumented/cmdline/classifier_mpd.sg
| A	examples/undocumented/cmdline/classifier_perceptron.sg
| A	examples/undocumented/cmdline/classifier_subgradientsvm.sg
| A	examples/undocumented/cmdline/classifier_svmlight.sg
| A	examples/undocumented/cmdline/classifier_svmlin.sg
| A	examples/undocumented/cmdline/classifier_svmocas.sg
| A	examples/undocumented/cmdline/classifier_svmsgd.sg
| A	examples/undocumented/cmdline/clustering_hierarchical.sg
| A	examples/undocumented/cmdline/clustering_kmeans.sg
| A	examples/undocumented/cmdline/distance_braycurtis.sg
| A	examples/undocumented/cmdline/distance_canberra.sg
| A	examples/undocumented/cmdline/distance_canberraword.sg
| A	examples/undocumented/cmdline/distance_chebyshew.sg
| A	examples/undocumented/cmdline/distance_chisquare.sg
| A	examples/undocumented/cmdline/distance_cosine.sg
| A	examples/undocumented/cmdline/distance_euclidean.sg
| A	examples/undocumented/cmdline/distance_geodesic.sg
| A	examples/undocumented/cmdline/distance_hammingword.sg
| A	examples/undocumented/cmdline/distance_jensen.sg
| A	examples/undocumented/cmdline/distance_manhatten.sg
| A	examples/undocumented/cmdline/distance_manhattenword.sg
| A	examples/undocumented/cmdline/distance_minkowski.sg
| A	examples/undocumented/cmdline/distance_tanimoto.sg
| A	examples/undocumented/cmdline/distribution_histogram.sg
| A	examples/undocumented/cmdline/distribution_hmm.sg
| A	examples/undocumented/cmdline/distribution_linearhmm.sg
| A	examples/undocumented/cmdline/kernel_chi2.sg
| A	examples/undocumented/cmdline/kernel_combined.sg
| A	examples/undocumented/cmdline/kernel_commulongstring.sg
| A	examples/undocumented/cmdline/kernel_commwordstring.sg
| A	examples/undocumented/cmdline/kernel_const.sg
| A	examples/undocumented/cmdline/kernel_diag.sg
| A	examples/undocumented/cmdline/kernel_distancetokernel.sg
| A	examples/undocumented/cmdline/kernel_fixeddegreestring.sg
| A	examples/undocumented/cmdline/kernel_gaussian.sg
| A	examples/undocumented/cmdline/kernel_gaussianshift.sg
| A	examples/undocumented/cmdline/kernel_linear.sg
| A	examples/undocumented/cmdline/kernel_linearbyte.sg
| A	examples/undocumented/cmdline/kernel_linearstring.sg
| A	examples/undocumented/cmdline/kernel_linearword.sg
| A	examples/undocumented/cmdline/kernel_localalignmentstring.sg
| A	examples/undocumented/cmdline/kernel_localityimprovedstring.sg
| A	examples/undocumented/cmdline/kernel_oligostring.sg
| A	examples/undocumented/cmdline/kernel_poly.sg
| A	examples/undocumented/cmdline/kernel_polymatchstring.sg
| A	examples/undocumented/cmdline/kernel_polymatchword.sg
| A	examples/undocumented/cmdline/kernel_sigmoid.sg
| A	examples/undocumented/cmdline/kernel_simplelocalityimprovedstring.sg
| A	examples/undocumented/cmdline/kernel_sparse_linear.sg
| A	examples/undocumented/cmdline/kernel_sparsegaussian.sg
| A	examples/undocumented/cmdline/kernel_sparsepoly.sg
| A	examples/undocumented/cmdline/kernel_top.sg
| A	examples/undocumented/cmdline/kernel_weightedcommwordstring.sg
| A	examples/undocumented/cmdline/kernel_weighteddegreepositionstring.sg
| A	examples/undocumented/cmdline/kernel_weighteddegreestring.sg
| A	examples/undocumented/cmdline/mkl_multiclass.sg
| A	examples/undocumented/cmdline/preproc_logplusone.sg
| A	examples/undocumented/cmdline/preproc_normone.sg
| A	examples/undocumented/cmdline/preproc_prunevarsubmean.sg
| A	examples/undocumented/cmdline/preproc_sortulongstring.sg
| A	examples/undocumented/cmdline/preproc_sortwordstring.sg
| A	examples/undocumented/cmdline/regression_krr.sg
| A	examples/undocumented/cmdline/regression_libsvr.sg
| A	examples/undocumented/cmdline/regression_svrlight.sg
| A	examples/undocumented/data
| A	examples/undocumented/elwms/foo.R
| A	examples/undocumented/elwms/octave_matplotlib.m
| A	examples/undocumented/elwms/octave_to_python.m
| A	examples/undocumented/elwms/octave_to_r.m
| A	examples/undocumented/elwms/python_to_octave.py
| A	examples/undocumented/elwms/r_to_octave.m
| A	examples/undocumented/elwms/r_to_python.R
| A	examples/undocumented/matlab
| A	examples/undocumented/octave
| A	examples/undocumented/octave_modular/check.sh
| A	examples/undocumented/octave_modular/classifier_domainadaptationsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_gmnpsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_gpbtsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_knn_modular.m
| A	examples/undocumented/octave_modular/classifier_lda_modular.m
| A	examples/undocumented/octave_modular/classifier_liblinear_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvm_minimal_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvmmulticlass_modular.m
| A	examples/undocumented/octave_modular/classifier_libsvmoneclass_modular.m
| A	examples/undocumented/octave_modular/classifier_mpdsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_perceptron_modular.m
| A	examples/undocumented/octave_modular/classifier_subgradientsvm_modular.m
| A	examples/undocumented/octave_modular/classifier_svmlight_modular.m
| A	examples/undocumented/octave_modular/classifier_svmlin_modular.m
| A	examples/undocumented/octave_modular/classifier_svmocas_modular.m
| A	examples/undocumented/octave_modular/classifier_svmsgd_modular.m
| A	examples/undocumented/octave_modular/clustering_hierarchical_modular.m
| A	examples/undocumented/octave_modular/clustering_kmeans_modular.m
| A	examples/undocumented/octave_modular/distance_braycurtis_modular.m
| A	examples/undocumented/octave_modular/distance_canberra_modular.m
| A	examples/undocumented/octave_modular/distance_canberraword_modular.m
| A	examples/undocumented/octave_modular/distance_chebyshew_modular.m
| A	examples/undocumented/octave_modular/distance_chisquare_modular.m
| A	examples/undocumented/octave_modular/distance_cosine_modular.m
| A	examples/undocumented/octave_modular/distance_euclidian_modular.m
| A	examples/undocumented/octave_modular/distance_geodesic_modular.m
| A	examples/undocumented/octave_modular/distance_hammingword_modular.m
| A	examples/undocumented/octave_modular/distance_jensen_modular.m
| A	examples/undocumented/octave_modular/distance_manhatten_modular.m
| A	examples/undocumented/octave_modular/distance_manhattenword_modular.m
| A	examples/undocumented/octave_modular/distance_minkowski_modular.m
| A	examples/undocumented/octave_modular/distance_sparseeuclidian_modular.m
| A	examples/undocumented/octave_modular/distance_tanimoto_modular.m
| A	examples/undocumented/octave_modular/distribution_histogram_modular.m
| A	examples/undocumented/octave_modular/distribution_hmm_modular.m
| A	examples/undocumented/octave_modular/distribution_linearhmm_modular.m
| A	examples/undocumented/octave_modular/kernel_auc_modular.m
| A	examples/undocumented/octave_modular/kernel_chi2_modular.m
| A	examples/undocumented/octave_modular/kernel_combined_modular.m
| A	examples/undocumented/octave_modular/kernel_commulongstring_modular.m
| A	examples/undocumented/octave_modular/kernel_commwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_const_modular.m
| A	examples/undocumented/octave_modular/kernel_custom_modular.m
| A	examples/undocumented/octave_modular/kernel_diag_modular.m
| A	examples/undocumented/octave_modular/kernel_distance_modular.m
| A	examples/undocumented/octave_modular/kernel_fixeddegreestring_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussian_modular.m
| A	examples/undocumented/octave_modular/kernel_gaussianshift_modular.m
| A	examples/undocumented/octave_modular/kernel_histogram_modular.m
| A	examples/undocumented/octave_modular/kernel_linear_modular.m
| A	examples/undocumented/octave_modular/kernel_linearbyte_modular.m
| A	examples/undocumented/octave_modular/kernel_linearstring_modular.m
| A	examples/undocumented/octave_modular/kernel_linearword_modular.m
| A	examples/undocumented/octave_modular/kernel_localalignmentstring_modular.m
| A	examples/undocumented/octave_modular/kernel_localityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_matchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_oligostring_modular.m
| A	examples/undocumented/octave_modular/kernel_poly_modular.m
| A	examples/undocumented/octave_modular/kernel_polymatchstring_modular.m
| A	examples/undocumented/octave_modular/kernel_polymatchwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_sigmoid_modular.m
| A	examples/undocumented/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| A	examples/undocumented/octave_modular/kernel_sparsegaussian_modular.m
| A	examples/undocumented/octave_modular/kernel_sparselinear_modular.m
| A	examples/undocumented/octave_modular/kernel_sparsepoly_modular.m
| A	examples/undocumented/octave_modular/kernel_top_modular.m
| A	examples/undocumented/octave_modular/kernel_weightedcommwordstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighteddegreepositionstring_modular.m
| A	examples/undocumented/octave_modular/kernel_weighteddegreestring_modular.m
| A	examples/undocumented/octave_modular/mkl_multiclass_modular.m
| A	examples/undocumented/octave_modular/preproc_commulongstring_modular.m
| A	examples/undocumented/octave_modular/preproc_commwordstring_modular.m
| A	examples/undocumented/octave_modular/preproc_logplusone_modular.m
| A	examples/undocumented/octave_modular/preproc_normone_modular.m
| A	examples/undocumented/octave_modular/preproc_prunevarsubmean_modular.m
| A	examples/undocumented/octave_modular/regression_krr_modular.m
| A	examples/undocumented/octave_modular/regression_libsvr_modular.m
| A	examples/undocumented/octave_modular/regression_svrlight_modular.m
| A	examples/undocumented/octave_modular/tools/load_matrix.m
| A	examples/undocumented/python/check.sh
| A	examples/undocumented/python/classifier_gmnpsvm.py
| A	examples/undocumented/python/classifier_gpbtsvm.py
| A	examples/undocumented/python/classifier_knn.py
| A	examples/undocumented/python/classifier_lda.py
| A	examples/undocumented/python/classifier_libsvm.py
| A	examples/undocumented/python/classifier_libsvmmulticlass.py
| A	examples/undocumented/python/classifier_libsvmoneclass.py
| A	examples/undocumented/python/classifier_mpdsvm.py
| A	examples/undocumented/python/classifier_perceptron.py
| A	examples/undocumented/python/classifier_svmlight.py
| A	examples/undocumented/python/clustering_hierarchical.py
| A	examples/undocumented/python/clustering_kmeans.py
| A	examples/undocumented/python/distance_braycurtis.py
| A	examples/undocumented/python/distance_canberra.py
| A	examples/undocumented/python/distance_canberraword.py
| A	examples/undocumented/python/distance_chebyshew.py
| A	examples/undocumented/python/distance_chisquare.py
| A	examples/undocumented/python/distance_cosine.py
| A	examples/undocumented/python/distance_euclidian.py
| A	examples/undocumented/python/distance_geodesic.py
| A	examples/undocumented/python/distance_hammingword.py
| A	examples/undocumented/python/distance_jensen.py
| A	examples/undocumented/python/distance_manhatten.py
| A	examples/undocumented/python/distance_manhattenword.py
| A	examples/undocumented/python/distance_minkowski.py
| A	examples/undocumented/python/distance_tanimoto.py
| A	examples/undocumented/python/distribution_histogram.py
| A	examples/undocumented/python/distribution_hmm.py
| A	examples/undocumented/python/distribution_linearhmm.py
| A	examples/undocumented/python/graphical/svm_classification.py
| A	examples/undocumented/python/graphical/svr_regression.py
| A	examples/undocumented/python/graphical/util.py
| A	examples/undocumented/python/kernel_chi2.py
| A	examples/undocumented/python/kernel_combined.py
| A	examples/undocumented/python/kernel_commulongstring.py
| A	examples/undocumented/python/kernel_commwordstring.py
| A	examples/undocumented/python/kernel_const.py
| A	examples/undocumented/python/kernel_diag.py
| A	examples/undocumented/python/kernel_distancetokernel.py
| A	examples/undocumented/python/kernel_fixeddegreestring.py
| A	examples/undocumented/python/kernel_gaussian.py
| A	examples/undocumented/python/kernel_gaussianshift.py
| A	examples/undocumented/python/kernel_linear.py
| A	examples/undocumented/python/kernel_linear_string.py
| A	examples/undocumented/python/kernel_linearbyte.py
| A	examples/undocumented/python/kernel_linearword.py
| A	examples/undocumented/python/kernel_localalignmentstring.py
| A	examples/undocumented/python/kernel_localityimprovedstring.py
| A	examples/undocumented/python/kernel_oligostring.py
| A	examples/undocumented/python/kernel_pluginestimatehistogram.py
| A	examples/undocumented/python/kernel_poly.py
| A	examples/undocumented/python/kernel_polymatchstring.py
| A	examples/undocumented/python/kernel_polymatchword.py
| A	examples/undocumented/python/kernel_salzbergstring.py
| A	examples/undocumented/python/kernel_sigmoid.py
| A	examples/undocumented/python/kernel_simplelocalityimprovedstring.py
| A	examples/undocumented/python/kernel_weightedcommwordstring.py
| A	examples/undocumented/python/kernel_weighteddegreepositionstring.py
| A	examples/undocumented/python/kernel_weighteddegreestring.py
| A	examples/undocumented/python/mkl_multiclass.py
| A	examples/undocumented/python/mkl_regression.py
| A	examples/undocumented/python/mkl_twoclass.py
| A	examples/undocumented/python/preproc_logplusone.py
| A	examples/undocumented/python/preproc_normone.py
| A	examples/undocumented/python/preproc_prunevarsubmean.py
| A	examples/undocumented/python/preproc_sortulongstring.py
| A	examples/undocumented/python/preproc_sortwordstring.py
| A	examples/undocumented/python/regression_krr.py
| A	examples/undocumented/python/regression_libsvr.py
| A	examples/undocumented/python/regression_svrlight.py
| A	examples/undocumented/python/tools/__init__.py
| A	examples/undocumented/python/tools/load.py
| A	examples/undocumented/r/check.sh
| A	examples/undocumented/r/classifier_gmnpsvm.R
| A	examples/undocumented/r/classifier_gpbtsvm.R
| A	examples/undocumented/r/classifier_knn.R
| A	examples/undocumented/r/classifier_lda.R
| A	examples/undocumented/r/classifier_libsvm.R
| A	examples/undocumented/r/classifier_libsvmmulticlass.R
| A	examples/undocumented/r/classifier_libsvmoneclass.R
| A	examples/undocumented/r/classifier_mpdsvm.R
| A	examples/undocumented/r/classifier_perceptron.R
| A	examples/undocumented/r/classifier_svmlight.R
| A	examples/undocumented/r/clustering_hierarchical.R
| A	examples/undocumented/r/clustering_kmeans.R
| A	examples/undocumented/r/distance_braycurtis.R
| A	examples/undocumented/r/distance_canberra.R
| A	examples/undocumented/r/distance_canberraword.R
| A	examples/undocumented/r/distance_chebyshew.R
| A	examples/undocumented/r/distance_chisquare.R
| A	examples/undocumented/r/distance_cosine.R
| A	examples/undocumented/r/distance_euclidian.R
| A	examples/undocumented/r/distance_geodesic.R
| A	examples/undocumented/r/distance_hammingword.R
| A	examples/undocumented/r/distance_jensen.R
| A	examples/undocumented/r/distance_manhatten.R
| A	examples/undocumented/r/distance_manhattenword.R
| A	examples/undocumented/r/distance_minkowski.R
| A	examples/undocumented/r/distance_tanimoto.R
| A	examples/undocumented/r/distribution_histogram.R
| A	examples/undocumented/r/distribution_hmm.R
| A	examples/undocumented/r/distribution_linearhmm.R
| A	examples/undocumented/r/graphical/hmm.R
| A	examples/undocumented/r/graphical/svm_classification.R
| A	examples/undocumented/r/graphical/svr_regression.R
| A	examples/undocumented/r/kernel_chi2.R
| A	examples/undocumented/r/kernel_combined.R
| A	examples/undocumented/r/kernel_commulongstring.R
| A	examples/undocumented/r/kernel_commwordstring.R
| A	examples/undocumented/r/kernel_const.R
| A	examples/undocumented/r/kernel_diag.R
| A	examples/undocumented/r/kernel_distancetokernel.R
| A	examples/undocumented/r/kernel_fixeddegreestring.R
| A	examples/undocumented/r/kernel_gaussian.R
| A	examples/undocumented/r/kernel_gaussianshift.R
| A	examples/undocumented/r/kernel_histogram.R
| A	examples/undocumented/r/kernel_linear.R
| A	examples/undocumented/r/kernel_linearstring.R
| A	examples/undocumented/r/kernel_localalignmentstring.R
| A	examples/undocumented/r/kernel_localityimprovedstring.R
| A	examples/undocumented/r/kernel_oligostring.R
| A	examples/undocumented/r/kernel_poly.R
| A	examples/undocumented/r/kernel_polymatchstring.R
| A	examples/undocumented/r/kernel_sigmoid.R
| A	examples/undocumented/r/kernel_simplelocalityimprovedstring.R
| A	examples/undocumented/r/kernel_string.R
| A	examples/undocumented/r/kernel_weightedcommwordstring.R
| A	examples/undocumented/r/kernel_weighteddegreepositionstring.R
| A	examples/undocumented/r/kernel_weighteddegreestring.R
| A	examples/undocumented/r/mkl_classify_christmas_star.R
| A	examples/undocumented/r/mkl_multiclass.R
| A	examples/undocumented/r/mkl_regression_3sine_waves.R
| A	examples/undocumented/r/mkl_regression_sine.R
| A	examples/undocumented/r/mkl_wd.R
| A	examples/undocumented/r/preproc_logplusone.R
| A	examples/undocumented/r/preproc_normone.R
| A	examples/undocumented/r/preproc_prunevarsubmean.R
| A	examples/undocumented/r/preproc_sortulongstring.R
| A	examples/undocumented/r/preproc_sortwordstring.R
| A	examples/undocumented/r/regression_krr.R
| A	examples/undocumented/r/regression_libsvr.R
| A	examples/undocumented/r/regression_svrlight.R
| A	examples/undocumented/r_modular/check.sh
| A	examples/undocumented/r_modular/classifier_gmnpsvm_modular.R
| A	examples/undocumented/r_modular/classifier_gpbtsvm_modular.R
| A	examples/undocumented/r_modular/classifier_knn_modular.R
| A	examples/undocumented/r_modular/classifier_lda_modular.R
| A	examples/undocumented/r_modular/classifier_liblinear_modular.R
| A	examples/undocumented/r_modular/classifier_libsvm_modular.R
| A	examples/undocumented/r_modular/classifier_libsvmmulticlass_modular.R
| A	examples/undocumented/r_modular/classifier_libsvmoneclass_modular.R
| A	examples/undocumented/r_modular/classifier_mpdsvm_modular.R
| A	examples/undocumented/r_modular/classifier_perceptron_modular.R
| A	examples/undocumented/r_modular/classifier_subgradientsvm_modular.R
| A	examples/undocumented/r_modular/classifier_svmlight_modular.R
| A	examples/undocumented/r_modular/classifier_svmlin_modular.R
| A	examples/undocumented/r_modular/classifier_svmocas_modular.R
| A	examples/undocumented/r_modular/classifier_svmsgd_modular.R
| A	examples/undocumented/r_modular/distribution_histogram_modular.R
| A	examples/undocumented/r_modular/distribution_hmm_modular.R
| A	examples/undocumented/r_modular/distribution_linearhmm_modular.R
| A	examples/undocumented/r_modular/kernel_auc_modular.R
| A	examples/undocumented/r_modular/kernel_chi2_modular.R
| A	examples/undocumented/r_modular/kernel_combined_modular.R
| A	examples/undocumented/r_modular/kernel_commulongstring_modular.R
| A	examples/undocumented/r_modular/kernel_commwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_const_modular.R
| A	examples/undocumented/r_modular/kernel_custom_modular.R
| A	examples/undocumented/r_modular/kernel_diag_modular.R
| A	examples/undocumented/r_modular/kernel_distancetokernel_modular.R
| A	examples/undocumented/r_modular/kernel_fixeddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_gaussian_modular.R
| A	examples/undocumented/r_modular/kernel_gaussianshift_modular.R
| A	examples/undocumented/r_modular/kernel_histogramword_modular.R
| A	examples/undocumented/r_modular/kernel_linear_modular.R
| A	examples/undocumented/r_modular/kernel_linearbyte_modular.R
| A	examples/undocumented/r_modular/kernel_linearstring_modular.R
| A	examples/undocumented/r_modular/kernel_linearword_modular.R
| A	examples/undocumented/r_modular/kernel_localalignmentstring_modular.R
| A	examples/undocumented/r_modular/kernel_localityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_oligostring_modular.R
| A	examples/undocumented/r_modular/kernel_poly_modular.R
| A	examples/undocumented/r_modular/kernel_polymatchstring_modular.R
| A	examples/undocumented/r_modular/kernel_polymatchword_modular.R
| A	examples/undocumented/r_modular/kernel_sigmoid_modular.R
| A	examples/undocumented/r_modular/kernel_simplelocalityimprovedstring_modular.R
| A	examples/undocumented/r_modular/kernel_sparsegaussian_modular.R
| A	examples/undocumented/r_modular/kernel_sparselinear_modular.R
| A	examples/undocumented/r_modular/kernel_sparsepoly_modular.R
| A	examples/undocumented/r_modular/kernel_topfisher_modular.R
| A	examples/undocumented/r_modular/kernel_weightedcommwordstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighteddegreepositionstring_modular.R
| A	examples/undocumented/r_modular/kernel_weighteddegreestring_modular.R
| A	examples/undocumented/r_modular/kernel_wordmatch_modular.R
| A	examples/undocumented/r_modular/mkl_multiclass_modular.R
| A	examples/undocumented/r_modular/preproc_commulongstring_modular.R
| A	examples/undocumented/r_modular/preproc_commwordstring_modular.R
| A	examples/undocumented/r_modular/preproc_logplusone_modular.R
| A	examples/undocumented/r_modular/preproc_normone_modular.R
| A	examples/undocumented/r_modular/preproc_prunevarsubmean_modular.R
|  
* commit 4821b7b30dfe63183c969409bc653f0357f51470
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 9 08:05:21 2010 +0000
| 
|     support Renesas SH architectures (thanks Nobuhiro Iwamatsu for the patch)
| 
| M	src/configure
|  
* commit 0150bb733eb18e63dba489937e292c16d2834657
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 9 02:44:47 2010 +0000
| 
|     fix a potential crasher in get_labels()
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit 1b78d07aa1b3a2edeb07661b39d81437cd91096e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:18:13 2010 +0000
| 
|     apply ryotas patch for elastic net lambda setting in libshogun
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit b238476ab5f7832e94db65bf9a93193ca571d02f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:17:18 2010 +0000
| 
|     apply ryotas patch for setting the lambda elastic net parameter in static interface
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 6dd344b880e2e64c06b0bd14510a44b18deced28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 6 05:16:38 2010 +0000
| 
|     apply ryotas patch for elastic net example
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit da9814f03a660e77c0bdee865e113eb48035e9ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 3 21:31:10 2010 +0000
| 
|     add transposed fkt
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit d379f038e5905cc709baeff7cd4298292feb3592
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 3 14:53:53 2010 +0000
| 
|     add functions to transpose strings/sparse features
| 
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 28ae04254fab282adecdcb4a7d24a0e115c0eb3e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 1 06:48:56 2010 +0000
| 
|     try to do some reasonable estimates of nnz in a number of dotfeatures
| 
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SparsePolyFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit a316322111a6317a5dd7d2afdf626fe1126cb5d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 23:48:03 2010 +0000
| 
|     compute hash incrementally
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
|  
* commit 9ea8b7d8aff73cacda3dbc65af4a2cee4e1229d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 21:29:13 2010 +0000
| 
|     fix sparse dot features + hashing
| 
| M	src/libshogun/features/SparsePolyFeatures.cpp
| M	src/libshogun/features/SparsePolyFeatures.h
|  
* commit 6e11d0eaea1f463a38780a89782f68008b995125
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 19:13:30 2010 +0000
| 
|     dim fix, update NEWS
| 
| M	src/NEWS
| M	src/libshogun/features/SparsePolyFeatures.cpp
|  
* commit d9e1f74c8afde8fa6051473761b0431e173469e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 31 11:17:24 2010 +0000
| 
|     add sparse poly features dotfeatures
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| A	src/libshogun/features/SparsePolyFeatures.cpp
| A	src/libshogun/features/SparsePolyFeatures.h
| M	src/modular/Features.i
|  
* commit 5403ae8adcafd04955df5b039425059384edc27e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 27 12:57:08 2010 +0000
| 
|     fix a too strict error check
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit fbdcdf2b1c1eed199857477d84a03fb2218cd422
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 26 07:02:37 2010 +0000
| 
|     enable progress w/ liblinear
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
|  
* commit 0dcab622addddb922ef6ff74e66563d04ed165e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 17:03:17 2010 +0000
| 
|     bugfix in sub idx
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit a60c84cc85b3121e1940f0946837a957e9a53a07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 14:25:14 2010 +0000
| 
|     bugfixes - sub_index needs to be NULL
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit 5455515fb852b1908ed26da5ec9c3af7586f02c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 25 10:30:38 2010 +0000
| 
|     introduce dense_dot_range_subset()
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
|  
* commit 10aeb87a42c59ef4b0cfa9f28c0be640a79653f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 24 19:35:00 2010 +0000
| 
|     properly parallelize hashedwdfeatures
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
|  
* commit 9d306f769d1784ecd73351d09a4044f82f81d48d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 22:52:25 2010 +0000
| 
|     fix a bug in combined dot features dense_dot_range
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
|  
* commit 301d8371d2262332ebe67d6c2b283fdfbe29acec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 21:33:52 2010 +0000
| 
|     get transposed wd features to work correctly
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/WDFeatures.cpp
|  
* commit d74d7a10ab1cf3b840655eaf546cc7b0f6030048
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 23 21:33:07 2010 +0000
| 
|     use dot() instead of loop
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
|  
* commit 2625aa3395e9718a7368685516768b66c576b783
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 20:11:07 2010 +0000
| 
|     fix combined dot dense range
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
|  
* commit 72c308eadf9237e83c18d699ecc2285b056f8716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 20:10:00 2010 +0000
| 
|     fix compile error with multitask kernel and add dense_dot_range call to combined dot features
| 
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/kernel/Kernel.h
|  
* commit 925aa612cddf3775923a4e32edb8702b548fa423
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 18:25:56 2010 +0000
| 
|     offset fixes
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
|  
* commit fbbc17c2afee1e86673f3f7e3a19334159800ff9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jan 22 17:25:31 2010 +0000
| 
|     fixed a few issues
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit eba997f89d3ab109a9364f3f90f40ff73b330dbd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 14:07:57 2010 +0000
| 
|     wip commit
| 
| M	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| M	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 852979466d423f4979c297d607b6c05ab56c2758
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 11:11:40 2010 +0000
| 
|     add transposed wd features
| 
| A	src/libshogun/features/HashedWDFeaturesTransposed.cpp
| A	src/libshogun/features/HashedWDFeaturesTransposed.h
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/Features.i
|  
* commit 7bfe8570c9b07d7830465ada7369957a9adc30ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 04:17:07 2010 +0000
| 
|     - add mkl elastic net comment in mkl examples
|     - add example on how to use hashed wd features
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| A	examples/python_modular/hashed_wd_features_modular.py
|  
* commit 82ec4bc8c938fc8bada2c7424b743063247d4fc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 22 03:56:53 2010 +0000
| 
|     - integrate Ryotas elastic net mkl and wrap liblinear in static interfaces.
|     - update NEWS accordingly
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 80a57c6bf79d6a2884882e313a59ba98a5b21191
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 18:21:15 2010 +0000
| 
|     add get_normalization const fucntion
| 
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/WDFeatures.h
|  
* commit 53d2466e77554c5efdeddd6cd94d3cc6dfdae508
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 17:28:46 2010 +0000
| 
|     in hash wd features, precompute seed taking into account previous start_degree-1 nt and allow external setting of normalization const to be able to concat wdfeatures and hashedwdfeatures
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
|  
* commit 03dddacf447466e062615a8cbac2ddfc23bb709a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 13:02:19 2010 +0000
| 
|     fix benchmarking for parallel tests
| 
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/lib/Time.h
|  
* commit 285dbe2533536b9e74cfd35ebd2338ca55355f3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 11:00:04 2010 +0000
| 
|     use dense_dot_range() which effectively parallelizes liblinear
| 
| M	src/libshogun/classifier/svm/SVM_linear.cpp
|  
* commit 92d0807515f97f4adb0407f8fcd3e0f9ff94ab2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 21 06:36:21 2010 +0000
| 
|     fix crasher, forgotten to mask hash to bitsize
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit c4d54547fe59d8e70bc8531b262093f9553e20bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:27:43 2010 +0000
| 
|     use incremental hash
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 022b47a562d8675f0db447ef2c1bc87bccc26026
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:03:25 2010 +0000
| 
|     add incremental murmur like hash
| 
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
|  
* commit 7052572f3eca108c3b767d7289e837524cb04e18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 22:03:13 2010 +0000
| 
|     add example on how to use incremental murmur like hash
| 
| M	examples/libshogun/library_hash.cpp
|  
* commit 16fd608644b273c95135eca49920efbe0c3ea170
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 21:05:29 2010 +0000
| 
|     fix crasher and beautify bench outputs
| 
| M	src/libshogun/features/DotFeatures.h
|  
* commit 46590de7fca7dd9454fa8cdd6226e64f47d10c4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 20:26:39 2010 +0000
| 
|     add functions to benchmark dotfeatures
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/lib/Time.h
|  
* commit edc6018d122b27b77f977087944b1f8025962ac5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 20 15:33:37 2010 +0000
| 
|     merge liblinear 1.51: currently solvers for
|     
|     L2R_LR
|     L2R_L2LOSS_SVC_DUAL
|     L2R_L2LOSS_SVC
|     L2R_L1LOSS_SVC_DUAL
|     
|     work.
|     
|     MCSVM_CS, L1R_L2LOSS_SVC, L1R_LR require further work.
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/features/SparseFeatures.h
|  
* commit 428e61767f71c3622f5b5ecf7655343cdaa698f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 09:02:32 2010 +0000
| 
|     fix a minor memory leak and offs and normalization for start_degree>0
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/WDFeatures.cpp
|  
* commit 3788582fdc617ea913ff15333bbabe3402bbc236
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 07:17:50 2010 +0000
| 
|     add hash example
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/library_hash.cpp
|  
* commit b4dc206f1d61a0831a22f8a621f7142f0ecfc96d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 07:09:54 2010 +0000
| 
|     fix off by one counter
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 839df1f97e11bac2843e997597243fb7949ddd62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 19 04:33:30 2010 +0000
| 
|     fixes + add debug output
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
| M	src/libshogun/features/HashedWDFeatures.h
|  
* commit 055330de7d661f77777dd79e9220ede20467ac0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 20:59:34 2010 +0000
| 
|     further fixes
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit 5e9afaa07777db21dcaaf867daa00161b1622a12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 20:25:41 2010 +0000
| 
|     fix argument ordering and use start
| 
| M	src/libshogun/features/HashedWDFeatures.cpp
|  
* commit 5e28c5b182d17536b424ad8bcde2587a08bbe25c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 15:56:00 2010 +0000
| 
|     implement hashed wd features
| 
| A	src/libshogun/features/HashedWDFeatures.cpp
| A	src/libshogun/features/HashedWDFeatures.h
| M	src/libshogun/lib/Hash.h
| M	src/modular/Features.i
|  
* commit 5d22e84c151060b679b0917d0a3c15f40f0969dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 18 15:49:43 2010 +0000
| 
|     fix typo - murmUr
| 
| M	src/libshogun/lib/Hash.h
|  
* commit c1c6a5f3e78acc2c3703e7c6ab6452105bf39f75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 16 09:09:16 2010 +0000
| 
|     remove segment loss functions that only appear in headers - fixes compilation
| 
| M	src/libshogun/structure/DynProg.h
|  
* commit 6aa52b586d43b992c2c7402a9ee4207adefab405
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 14 10:17:53 2010 +0000
| 
|     fix typo, update news
| 
| M	src/NEWS
| M	src/libshogun/lib/Trie.h
|  
* commit fe0065ec9bf302fe8dbd56a9e4b78e59ab2e505a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 11 19:51:01 2010 +0000
| 
|     Hack to get it to work without the missing file(s) in genomic_signals
| 
| D	src/libshogun/genomic_signals/TrainPredMaster.cpp
| A	src/libshogun/genomic_signals/TrainPredMaster.cpp.orig
| D	src/libshogunui/GUISignals.cpp
| A	src/libshogunui/GUISignals.cpp.orig
| M	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit c027cbb31c6655bab021c09ae2a24a6ef93e6288
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 11 09:56:18 2010 +0000
| 
|     update for new server
| 
| M	Makefile
| M	doc/pages_cn/ExamplesModularPython.mainpage
|  
* commit 50435f0e673d2f91ed44fb92e1868c38f3e12e6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 11 09:36:26 2010 +0000
| 
|     fix typos
| 
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit 06adb349ae1cf38504ce862b809eb3c1aae71cdb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 10 07:26:00 2010 +0000
| 
|     update doc for doxygen 1.6.2
| 
| M	doc/Doxyfile
| M	doc/pages/ExamplesModularPython.mainpage
|  
* commit c4c31723df4915216e72b8f689cca32aa72a9c2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 10 07:25:29 2010 +0000
| 
|     disable search engine for doxygen 1.6.2 (fixes build failures)
| 
| M	src/modular/Classifier.doxy
| M	src/modular/Clustering.doxy
| M	src/modular/Distance.doxy
| M	src/modular/Distribution.doxy
| M	src/modular/Evaluation.doxy
| M	src/modular/Features.doxy
| M	src/modular/Kernel.doxy
| M	src/modular/Library.doxy
| M	src/modular/PreProc.doxy
| M	src/modular/Regression.doxy
| M	src/modular/Structure.doxy
|  
* commit 4e18e86a1a76336ae73b1b011cfca7ce0b70df91
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:53:12 2010 +0000
| 
|     -- cleanup
| 
| D	src/libshogun/genomic_signals/KernelParam.cpp
| D	src/libshogun/genomic_signals/KernelParam.h
| M	src/libshogun/genomic_signals/SignalModel.cpp
| M	src/libshogun/genomic_signals/SignalModel.h
| M	src/libshogun/genomic_signals/TrainPredMaster.cpp
| M	src/libshogun/genomic_signals/TrainPredMaster.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUISignals.cpp
| M	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 7b12d65ccf4309341e11dea8060d1df5ee967d35
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:19 2010 +0000
| 
|     -- rename to avooid confusion with Unix signals
| 
| A	src/libshogun/genomic_signals/KernelParam.cpp
| A	src/libshogun/genomic_signals/KernelParam.h
| A	src/libshogun/genomic_signals/SignalModel.cpp
| A	src/libshogun/genomic_signals/SignalModel.h
| A	src/libshogun/genomic_signals/TrainPredMaster.cpp
| A	src/libshogun/genomic_signals/TrainPredMaster.h
| D	src/libshogun/signals/KernelParam.cpp
| D	src/libshogun/signals/KernelParam.h
| D	src/libshogun/signals/SignalModel.cpp
| D	src/libshogun/signals/SignalModel.h
| D	src/libshogun/signals/TrainPredMaster.cpp
| D	src/libshogun/signals/TrainPredMaster.h
|  
* commit 963479403925b331e562964f0cbfa75ce64ee631
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:17 2010 +0000
| 
|     -- new commands for the SGInterface
| 
| M	src/libshogunui/GUICommands.h
|  
* commit 931f86c57dec1cf9405ab397f9cfcd416ee730fa
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:16 2010 +0000
| 
|     -- first new classes for the signal prediction pipeline
|     
|     Conflicts:
|     
|     	trunk/src/libshogun/signals/TrainPredMaster.cpp
|     	trunk/src/libshogun/signals/TrainPredMaster.h
|     	trunk/src/libshogunui/GUISignals.cpp
|     	trunk/src/libshogunui/GUISignals.h
| 
| A	src/libshogun/signals/KernelParam.cpp
| A	src/libshogun/signals/KernelParam.h
| A	src/libshogun/signals/SignalModel.cpp
| A	src/libshogun/signals/SignalModel.h
| A	src/libshogun/signals/TrainPredMaster.cpp
| A	src/libshogun/signals/TrainPredMaster.h
| A	src/libshogunui/GUISignals.cpp
| A	src/libshogunui/GUISignals.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 1832dae5642e3f836f05ff69c15d91539e22d87b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:14 2010 +0000
| 
|     -- more work on memory leaks
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3fa181780eae9eb07c9774dae169324ad868421c
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:10 2010 +0000
| 
|     -- fixed more memory leaks
|     	looks quite good now
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 6f55863404c7f69f6f530a928512cc10a0a23b6f
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Jan 8 13:49:00 2010 +0000
| 
|     -- fixed some more mem leaks
| 
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d32afce446e9d42e458e871d32c0e40436023c27
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Jan 8 10:09:04 2010 +0000
| 
|     Parameterized MTL Kernel Normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelTreeNormalizer.h
|  
* commit 5c36c9ba1a7041715df9829c37ffa972bdd94d93
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 7 15:44:29 2010 +0000
| 
|     (hopefully) fixed a bug in best_path/long transitions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit e549efa52efef4811746e7cd11abe8be2fb6ce3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 6 17:00:24 2010 +0000
| 
|     write out floating point scalars to file for cmdline interface
| 
| M	src/cmdline/CmdLineInterface.cpp
|  
* commit bbd37ba6b847ec45cc04c87d6f1ff19d18370b69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 6 14:53:02 2010 +0000
| 
|     fix name
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 4519e2a57defffbb44b82607a141cf95682cafd3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 5 15:44:49 2010 +0000
| 
|     reactivated 32bit access operator
| 
| M	src/libshogun/lib/MemoryMappedFile.h
|  
* commit 18ecf8fa63985449ea754245909958a530c49013
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 5 14:34:25 2010 +0000
| 
|     better?
| 
| M	src/libshogun/lib/MemoryMappedFile.h
|  
* commit 1a8ac3c5e4f906b6b093426cb229a30d9412a888
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 21:03:39 2009 +0000
| 
|     time limit also for libsvm oneclass/multiclass
| 
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
|  
* commit 438a7ff1b61dac65357e01dabc8e52205361024c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 20:53:44 2009 +0000
| 
|     let libsvm respect max_train_time
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit b80b7ba0a7f4263104264a080038c6d7a4bbcc9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 30 10:53:42 2009 +0000
| 
|     fix a bug in static interfaces that could make testing fail when not directly done after training
| 
| M	src/NEWS
| M	src/libshogunui/GUIKernel.cpp
|  
* commit 6fc5c46eff3a0e2ca8ae9dfefddb3c64653eccc7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 27 06:46:15 2009 +0000
| 
|     R compile fixes; however matlab/R won't work until cygwin gets mingw support of gcc4.x
| 
| M	src/configure
|  
* commit ccbb97a5683f5b48f8d957e86cf0c7696fd11026
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 27 05:20:18 2009 +0000
| 
|     further compile fixes for cygwin1.7: works now cleanly for octave,python,python_modular: note upon install issue
|     
|     make install DESTDIR=
|     
|     otherwise installation will fail (cygwin has problems with double '/', i.e. '//' in paths)
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0983ae5251c607e8d0ef93c8bc03d5b6cc5ff6ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 26 10:52:24 2009 +0000
| 
|     build fixes for win32/cygwin1.7: octave, python & cmdline work now
| 
| M	src/Makefile.template
| M	src/configure
| M	src/octave/OctaveInterface.cpp
|  
* commit 80c9c190dc0cf7f972b571e4efe387ac08670238
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 25 20:24:45 2009 +0000
| 
|     compile fixes for cygwin
| 
| M	src/configure
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 5c3255fc736de816cff9ee019253ef97045af57a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 25 18:26:40 2009 +0000
| 
|     update copyright to 2010
| 
| M	src/libshogun/base/Version.h
|  
* commit 2b2ed1def6674c1a096149f1bfb88ed0ae01d486
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sat Dec 12 00:03:32 2009 +0000
| 
|     Added Soerens prettier example.
| 
| M	examples/python_modular/mkl_binclass_modular.py
|  
* commit c2cf6f4e912102832815c3961820025a52f266dd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 9 08:39:16 2009 +0000
| 
|     -- fixed delete delete[] mismatch
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 8ef6d87f5b029698d6b38d14d52f19f53ba38a65
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sun Dec 6 17:42:35 2009 +0000
| 
|     Example of doing two class MKL
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
| A	examples/python_modular/mkl_binclass_modular.py
|  
* commit 1c5d858d4457d7ba31baf6019121bca033f0aa36
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sun Dec 6 15:56:48 2009 +0000
| 
|     Updated CombinedKernel and CustomKernel example.
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit 80bdec616a3b5f222bff28c644627950dab6fe02
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri Dec 4 22:57:02 2009 +0000
| 
|     Behaviour which goes against Soerens advice.
| 
| M	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit eead3397410f031e8d2feb7e11d94a606f541c4e
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri Dec 4 20:46:25 2009 +0000
| 
|     Added new example showing mix of custom and shogun kernels.
| 
| A	examples/python_modular/classifier_custom_kernel_modular.py
| D	examples/python_modular/custom_kernel_modular.py
| A	examples/python_modular/kernel_combined_custom_poly_modular.py
|  
* commit a6a9f594cbcf734abbd178bf96e26d830aa3b9ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 18:21:58 2009 +0000
| 
|     fix compilation of dynprog in python modular (the structure needs to be global
|     		to be recognized by swig)
| 
| M	src/configure
| M	src/libshogun/structure/DynProg.h
|  
* commit 2a26352f55ec4e25adcb18a1c590499388edd57d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 18:20:06 2009 +0000
| 
|     potentially fix sign flip occurring with liblinear
| 
| M	src/libshogun/classifier/svm/LibLinear.cpp
|  
* commit 358c04bfe4d392509cb4769896f3bdae32cc7de0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 4 11:31:10 2009 +0000
| 
|     formatting changes
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
|  
* commit 4fe397117d418942e754cbcf72dea86a412531d1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:52 2009 +0000
| 
|     -- fixed problem with loss that turned up using the mask for alternative regions
| 
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit ad2211cd00813ed5a2092221e65e2aecf240126a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:49 2009 +0000
| 
|     -- modified semgent loss such that it is similar to
|        the old segment loss used for nGasp
| 
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit e6ce7a492ccc881372fa75f79543dde3bdbbe63d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Dec 2 07:53:46 2009 +0000
| 
|     -- integrated different versions of dynamic program and loss
|        implementations via ifdefs to compare the different loss types
|        and debug the DynProg
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit 0c3d7a2b5cfdb9e514da3c0247ca5463b74d8636
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 25 07:44:47 2009 +0000
| 
|     fix compile error occuring with octave
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit fdcd4cc8f6cfc5a315483c640e09203629d1f068
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 24 14:40:58 2009 +0000
| 
|     potentially fix custom kernel init problem in static interfaces
| 
| M	src/libshogunui/GUIKernel.cpp
|  
* commit e660247ef132efe34fac9bd903a63baa763e95a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 24 14:40:26 2009 +0000
| 
|     improve error output when getting vectors
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit c1135c34a8522788b543493529f18ffa87baf64e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 23 20:26:22 2009 +0000
| 
|     trial to fix matlab interface for matlab R2009a
| 
| M	src/matlab/MatlabInterface.cpp
|  
* commit dadd6b0b6a8b3202c791bb5e61460ba880efe5a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 20 13:03:26 2009 +0000
| 
|     potentially improve vector shape error message (untested)
| 
| M	src/matlab/MatlabInterface.cpp
|  
* commit ebf21d47c54f43e72413a149b745acbf35406412
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 20 12:53:34 2009 +0000
| 
|     fix cplex detection on amd64 machines
| 
| M	src/configure
|  
* commit 8aff30c5b35468cd86dea9a3676147203584c36e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 19 09:00:58 2009 +0000
| 
|     make SNP kernel LIK like
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 78ed443f8787085083fb223ba6e01aa67a500088
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 19 09:00:35 2009 +0000
| 
|     fix observations...
| 
| M	src/libshogun/distributions/HMM.cpp
|  
* commit b80c6fdbc76ef29fd918452f6cda01e2e7451013
| Author: Elpmis Lee <elpmis.lee@gmail.com>
| Date:   Wed Nov 18 16:31:30 2009 +0000
| 
|     test
| 
| M	doc/pages_cn/Screenshots.mainpage
|  
* commit ca206b4fc5f034e6cbdb0df6fdccbfeb577d7d17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 17 17:25:17 2009 +0000
| 
|     fixes...
| 
| M	src/libshogun/kernel/SNPStringKernel.cpp
| M	src/libshogun/kernel/SNPStringKernel.h
|  
* commit 2fa216c58b599aa849e978abd0e3943efc05d44b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Nov 17 13:14:29 2009 +0000
| 
|     -- bugfix: nucleotide loss produced negative results
| 
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 8fff746d7ce57bb7cca337e2d64496ba1b0baa8e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Nov 17 13:11:55 2009 +0000
| 
|     -- dead code removed
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 03037796cbd5a81db488cc266fdf038852cb0afc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 19:21:03 2009 +0000
| 
|     add SNP kernel
| 
| M	src/NEWS
| A	src/libshogun/kernel/SNPStringKernel.cpp
| A	src/libshogun/kernel/SNPStringKernel.h
| M	src/modular/Kernel.i
|  
* commit c616aa92cad2011d0f90a971089e65903c7635f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 16:45:30 2009 +0000
| 
|     fix set_w() for linear classifiers, thanks to Александр Горбань for the report
| 
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit cae6bfa4fba0cdcc21699f5c7f260e47456d3a73
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:56:46 2009 +0000
| 
|     fixed compilation problem
| 
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
|  
* commit 3a15f6fadce75b9944c9fcccf3ca9bb16912fd89
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:54:57 2009 +0000
| 
|     minor change
| 
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit 57cdc6083c46625c3f40f2c0bea0df50e2977f4b
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Nov 16 14:53:19 2009 +0000
| 
|     working implementation of the MultitaskKernel by means of a KernelNormalizer
| 
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/MultitaskKernelNormalizer.h
|  
* commit bf8fd116f7c74534b1750ffab4fb28a809991647
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:52:05 2009 +0000
| 
|     add quotes on update-webpage
| 
| M	Makefile
|  
* commit 12c4f82df8aad27a2ad42cb1cc07d2c6b86682c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:36:42 2009 +0000
| 
|     only ci release dir
| 
| M	Makefile
|  
* commit 7d9e0934882fbfa6f55aee859aa39da42d2d1208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:35:01 2009 +0000
| 
|     Preparing for new Release shogun_0.9.1
| 
| M	doc/Doxyfile
|  
* commit 745822b46a71b19302a8733cfcc04e69dbc7b755
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:15:08 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b138ac25afb3b069acd3363e0e7cb68d3695aba4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 09:14:27 2009 +0000
| 
|     - fix type mismatch in larank
|     - fix documentation in stringfeatures
|     - fix compilation of examples upon make check-examples
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit 9598d4e8ce746671d6e9924841c48e20ca7ac25c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:54:56 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit fa91e1168f6af9a9ee94c339c6c7dbe44585529d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:45:31 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit faaa74572a12d9c7fa39a028fcaeea06e1070387
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:44:09 2009 +0000
| 
|     fix a compile failure occuring with the upcoming binutils-gold
|     - workaround quality only though.
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/README
| M	src/Makefile.template
|  
* commit e391adb20a6cbecef72b95d47b99b03d65d55a7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 16 07:07:28 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 9235fd4b2631bd09a45f6e94bf64fb84c4d77ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 14 06:27:57 2009 +0000
| 
|     use shogun types in LaRank and cleanup / reorder code
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Time.h
|  
* commit 991068c66b811c45a346550c6b91df5eb8bc6521
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 13 16:45:35 2009 +0000
| 
|     moved MultitaskKernel functionality into a kernel normalizer
| 
| A	src/libshogun/kernel/MultitaskKernelNormalizer.h
| M	src/modular/Kernel.i
|  
* commit 667278a556dc05ffb477f829a463592c53c1d974
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 13 16:01:40 2009 +0000
| 
|     remove multitask kernel
| 
| D	src/libshogun/kernel/MultitaskKernel.cpp
| D	src/libshogun/kernel/MultitaskKernel.h
| M	src/modular/Kernel.i
|  
* commit 13424115c5b0861ca658edcbc48c44792b8bb19e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 13 13:11:12 2009 +0000
| 
|     - fix a crasher occurring with MKL and interleaved optimization
|     - fix bug #143 thanks Thomas Fillon for the patch
| 
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 20a52a9089e6ac732fd397ba1c83ebe73b69335c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 09:56:31 2009 +0000
| 
|     add an example on how to use larank
| 
| M	examples/python_modular/classifier_gmnpsvm_modular.py
| A	examples/python_modular/classifier_larank_modular.py
|  
* commit ea8e389f3660ca4a9c6b8b10945ac8978f5e241e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 09:51:54 2009 +0000
| 
|     larank finally seems to work reliably
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
|  
* commit 9f08ba30fd587d6e7c2ba0bf04d834652466ffdb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 12 00:15:34 2009 +0000
| 
|     -don't warn on deprecated functions
|     -get larank to work in most cases
| 
| M	src/configure
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
|  
* commit 803b3d4f9569f0567d15985eda6a7328084606b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 10 15:09:45 2009 +0000
| 
|     add a function that returns all k-NN solutions for 1...k
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/modular/Classifier.i
|  
* commit b62e0ab41ec1f82c4bf275a252976c8e58c2a6ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 10 09:05:30 2009 +0000
| 
|     improve get_kernel_matrix progress feedback
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit ca958b15aa31b0c312cc748b6eaab5f1befe26ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 23:15:15 2009 +0000
| 
|     some sparse features don't come *sorted* with features in ascending order.
|     introduce sort_features() function to remedy this and call it by default when
|     loading svmlight files
| 
| M	src/libshogun/features/SparseFeatures.h
|  
* commit e689a57fd343e92c8829a71a27c936b6a016acb6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 22:37:03 2009 +0000
| 
|     - code beautifications in KNN
|     - in io progress: measure current time not cpu runtime (as this will always stay the same even when more processors are used)
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
|  
* commit 253a418faf99d5fcda730d408893f88dc3d2b022
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 20:36:57 2009 +0000
| 
|     whitespace cleanups
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
|  
* commit dbb89d6b09753d17746a181bef9946ba016fdf3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 17:30:24 2009 +0000
| 
|     KNN fix crash when labels are not set
| 
| M	src/libshogun/classifier/KNN.cpp
|  
* commit 5242102ded0fad21b6abebab65d716ba1c457299
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 16:23:22 2009 +0000
| 
|     fix a number of warnings
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/preproc/DecompressString.h
|  
* commit e949c64cbcf4360bf4d75af95905e8dde85e01c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 9 09:29:32 2009 +0000
| 
|     fix two memory leaks
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/modular/Classifier.i
|  
* commit ca261f22704c0bdc4c5a1d869c40ed0add77d441
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 19:01:32 2009 +0000
| 
|     spelling fix explicitly
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 1617a327febba8149ee7215c196e2942140bb0ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 18:59:35 2009 +0000
| 
|     fix a few spelling mistakes as pointed out by lintian
| 
| M	src/libshogun/distributions/LinearHMM.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/structure/Plif.h
| M	src/python_modular/swig_typemaps.i
|  
* commit d961e269fcd1148b43da212233241a37881e9890
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 8 00:49:18 2009 +0000
| 
|     add convenience constructor for custom kernel
| 
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit 3d91c1b039881ca5bc603866bb19f2c9a6a53f7a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 19:09:19 2009 +0000
| 
|     erase also cn docu
| 
| M	Makefile
|  
* commit 29308c956bf5ce88d5e02479a44258b2eb88897d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 17:47:53 2009 +0000
| 
|     add english spelling fixes as suggested by Elpmis
| 
| M	doc/insert_examples.py
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/ExamplesStaticPython.mainpage
|  
* commit f739bb82bffc1a554f8ba5928d4328fa6e4d6e36
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 17:39:47 2009 +0000
| 
|     add updated chinese examples from Elpmis Lee, make doc_cn now generates examples + short docu header in Chinese too
| 
| M	doc/Makefile
| A	doc/insert_examples_cn.py
| M	doc/pages_cn/Documentation.mainpage
| M	doc/pages_cn/ExamplesLibshogun.mainpage
| M	doc/pages_cn/ExamplesModularOctave.mainpage
| M	doc/pages_cn/ExamplesModularPython.mainpage
| M	doc/pages_cn/ExamplesModularR.mainpage
| M	doc/pages_cn/ExamplesStaticCmdline.mainpage
| M	doc/pages_cn/ExamplesStaticOctave.mainpage
| M	doc/pages_cn/ExamplesStaticPython.mainpage
| M	doc/pages_cn/ExamplesStaticR.mainpage
| M	doc/pages_cn/FAQ.mainpage
| M	doc/pages_cn/ModularTutorial.mainpage
|  
* commit d30d0e3195085298e3c6f086355349d02cc70c69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 08:23:30 2009 +0000
| 
|     include chinese documentation on make update-webpage and update news and contributors
| 
| M	Makefile
| M	src/CONTRIBUTIONS
| M	src/NEWS
|  
* commit 0241383ad2e47a5de44828737c4e91d3d73a8cca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:56:51 2009 +0000
| 
|     don't yet insert examples for chinese
| 
| M	doc/Makefile
| M	doc/insert_examples.py
| M	doc/pages/ExamplesModularPython.mainpage
|  
* commit 91862e9d41c24dbc7506c19ea55df9031a917c9f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:13:17 2009 +0000
| 
|     rename target doc-cn: -> doc_cn:
| 
| M	doc/Makefile
|  
* commit e6fb5c542f56d6c89b4ff56fe89220212a9f8ef5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 7 07:10:32 2009 +0000
| 
|     add chinese documentation (translated by Elpmis Lee)
| 
| A	doc/Doxyfile_cn
| M	doc/Makefile
| M	doc/insert_examples.py
| A	doc/pages_cn/Authors.mainpage
| A	doc/pages_cn/DeveloperTutorial.mainpage
| A	doc/pages_cn/Documentation.mainpage
| A	doc/pages_cn/EierlegendeWollmilchSauInterface.mainpage
| A	doc/pages_cn/Examples.mainpage
| A	doc/pages_cn/ExamplesLibshogun.mainpage
| A	doc/pages_cn/ExamplesModularOctave.mainpage
| A	doc/pages_cn/ExamplesModularPython.mainpage
| A	doc/pages_cn/ExamplesModularR.mainpage
| A	doc/pages_cn/ExamplesStaticCmdline.mainpage
| A	doc/pages_cn/ExamplesStaticOctave.mainpage
| A	doc/pages_cn/ExamplesStaticPython.mainpage
| A	doc/pages_cn/ExamplesStaticR.mainpage
| A	doc/pages_cn/FAQ.mainpage
| A	doc/pages_cn/Installation.mainpage
| A	doc/pages_cn/Interfaces.mainpage
| A	doc/pages_cn/License.mainpage
| A	doc/pages_cn/Methods.mainpage
| A	doc/pages_cn/ModularInterfaces.mainpage
| A	doc/pages_cn/ModularTutorial.mainpage
| A	doc/pages_cn/Screenshots.mainpage
| A	doc/pages_cn/StaticCommandLineInterface.mainpage
| A	doc/pages_cn/StaticInterfaces.mainpage
| A	doc/pages_cn/StaticOctaveInterface.mainpage
| A	doc/pages_cn/StaticPythonInterface.mainpage
| A	doc/pages_cn/StaticRInterface.mainpage
| A	doc/pages_cn/StaticTutorial.mainpage
| A	doc/pages_cn/Tutorial.mainpage
| A	doc/pages_cn/developerreadme.mainpage
| A	doc/pages_cn/shogun_footer.html
| A	doc/pages_cn/soname.mainpage
|  
* commit fea070acd9e9f601dc66b70a9d10430813057f71
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 23:39:45 2009 +0000
| 
|     compute matrix in a parallel way upon get_kernel_matrix()
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit dffa15f941893c842548cb0bd417cd3ab4607642
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 18:15:03 2009 +0000
| 
|     added has_features()
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 043318780876eb527235be85a6b79c37937b843f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:31:36 2009 +0000
| 
|     added get_kernel_type
| 
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit f1ed0bf27bb9835a0e8e70a92be77374e3f93925
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:28:11 2009 +0000
| 
|     added get_feature_type, get_feature_class
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 5324c2594f4e013517b86aee6387fd32d824c390
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 17:05:18 2009 +0000
| 
|     added missing include
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit f755ec70b6334cf4f4f131ff01210e172b9c0b83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 17:03:55 2009 +0000
| 
|     use ASSERT instead of assert
| 
| M	src/libshogun/kernel/MultitaskKernel.cpp
| M	src/libshogun/kernel/MultitaskKernel.h
|  
* commit dd61117f143843150921871d42bd73fd8f79b705
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 16:54:31 2009 +0000
| 
|     added MultitaskKernel
| 
| A	src/libshogun/kernel/MultitaskKernel.cpp
| A	src/libshogun/kernel/MultitaskKernel.h
|  
* commit 17f71ec258d1b08d0be525ae51822b271b694c12
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 16:53:51 2009 +0000
| 
|     added swig interface for MultitaskKernel
| 
| M	src/modular/Kernel.i
|  
* commit 1d946a4528cdefdcfea7f61ca484e6fdfaa73638
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 15:05:03 2009 +0000
| 
|     removed redundant -lshogun flag
| 
| M	examples/libshogun/Makefile
|  
* commit 18c36c2e9206b44055bda17d3536db5e0a24c3ea
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Nov 6 14:56:42 2009 +0000
| 
|     enhanced makefile, explained how to compile the examples if shogun is installed in a users home dir
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/README
|  
* commit 90a005d4c26fb777ef6e14b5de2760465f010214
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 12:46:46 2009 +0000
| 
|     simplify kernel computation, proper progress and cancel
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit 2a74d43bc1276044b031128addc86a4ee2cc0350
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 11:17:20 2009 +0000
| 
|     potentially more correct svr fix :)
| 
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit fa24f608ac641a1a515fdc2e0d2e579237b50a7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 11:02:29 2009 +0000
| 
|     - modify io functions: using obj.io.enable_file_and_line() it is now possible to
|     prefix all of shogun's output with filename and line number (where the printing
|     takes place). this allows for better tracing of where an error actually occured
|     - fix problem with svr light + kernel access
| 
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit 3716a8618593c17c6a6227e2588dc8fcd16e1979
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 6 09:11:40 2009 +0000
| 
|     - remove get_kernel_matrix_{real,shortreal} and get_kernel_matrix() code duplication
|     and use a template function instead, adjust callers accordingly
|     - fix combined kernel init w/ svmlight
|     - call make clean in libshogun examples on check-examples and always use
|     $(MAKE) to get things work on non-gnumake systems
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 591e8f6df8c92d431ddfd2cb4c29f1ec77de0b04
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 14:40:59 2009 +0000
| 
|     forgot to add decompress preproc
| 
| A	src/libshogun/preproc/DecompressString.h
|  
* commit 25983755f277db3ade72432f37d715c4c1419741
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 14:38:57 2009 +0000
| 
|     - hopefully really fix combined/custom kernel num_vec_lhs etc
|     - add example on how to use compression features of all kinds
|     - add decompression preproc
|     - fix preproc processing in string features: now preprocs are allowed to return
|     strings of arbitrary length. This requires to always return copies of the
|     (processed) string / caching is currently not implemented.
|     - change get_string_features and typemap accordingly: strings are now copied
|     first within libshogun and then again to python etc: while this results in
|     memory overhead (1 string is always duplicated), it works correcly with
|     preprocessors.
|     - update NEWS
| 
| A	examples/python_modular/features_string_char_compressed_modular.py
| M	src/NEWS
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/PreProc.i
| M	src/python_modular/swig_typemaps.i
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 2a06e9a75a135e77fe8ef6ab452b5e24901d24f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 00:40:52 2009 +0000
| 
|     range check no loner necessary (is taken care of in CKernel)
| 
| M	src/libshogun/kernel/CustomKernel.h
|  
* commit b44ec9c5851221a5717ee11c01fd637f8fd82f2e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 5 00:37:30 2009 +0000
| 
|     intrusive change to get combined kernels with only custom kernels to work in svr
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 1a9a1f970d9831a3ab156b1244897aa6709acd0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 23:34:16 2009 +0000
| 
|     fix a few init problems with combined/custom kernel
| 
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 6a70278fb1bad2161b20dea1f538c652c3f3155c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 13:53:36 2009 +0000
| 
|     (de)compression works now for other compressors too
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
|  
* commit 99fd6ba05ef22719bec36fe0c1839772e1c20a6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 13:52:23 2009 +0000
| 
|     really fix python 2.6 / 2.5 paths
| 
| M	src/configure
|  
* commit b5e090f7d8ba37af8178c9525faaa61fa1338aba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 10:23:16 2009 +0000
| 
|     fail when any of the modular interfaces is enabled but swig is not found or too old
| 
| M	src/configure
|  
* commit 6880db17c3ba9ae78c6d8e723076004799515994
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 09:07:01 2009 +0000
| 
|     add python 2.6 and cplex 12 detection
| 
| M	src/configure
|  
* commit 98451260ec870f64e0b4c0164cfc794290048355
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 4 02:14:03 2009 +0000
| 
|     add load_compressed/save_compressed  - seems to work ok for UNCOMPRESSED, LZO, GZIP
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/modular/Library.i
|  
* commit dae0d8f9a901471c8fccc4212bfe9fb65b2d0e47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 22:44:55 2009 +0000
| 
|     add save_compressed and load_compressed functions to features
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
| M	src/libshogun/lib/Signal.h
|  
* commit e636b1d4b0c13d1b6fcd40eb7738baa2bdb77fca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 19:07:33 2009 +0000
| 
|     don't init kernel when no features are available (assume kernel does not need
|     		to be inited)
| 
| M	src/libshogunui/GUIKernel.cpp
|  
* commit ddb19c18bd33e704946b44d25bbd61b4669b5a0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 12:16:14 2009 +0000
| 
|     add compression code + docu for gzip, bzip2, lzo and lzma
| 
| A	src/libshogun/lib/Compressor.cpp
| M	src/libshogun/lib/Compressor.h
|  
* commit 02e4ba86ec4f8668cab0204c82aa6b3eb75db054
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 3 07:10:49 2009 +0000
| 
|     fix compilation in static interfaces and add lzma detection / partial support
| 
| M	src/configure
| M	src/libshogun/lib/Compressor.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 6bf65f3a6c446ac8d02ff6ec161ad3ec1528b73b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 23:41:36 2009 +0000
| 
|     add lzo/gzip/bzip2 compression / decompression support
| 
| M	src/configure
| A	src/libshogun/lib/Compressor.h
|  
* commit 9e1eede5ca0b7fe488d17fca6c40aa1b671ecb7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 21:59:49 2009 +0000
| 
|     add preproc functionality to string features
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
|  
* commit d32caa040e4527cc9580b7022a27e54f0b12dced
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 12:05:43 2009 +0000
| 
|     - add free argument to string features' get_feature_vector.
|     - configure detection of ultra fast lzo (de-)compression
| 
| M	src/NEWS
| M	src/configure
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distributions/HMM.cpp
| M	src/libshogun/distributions/HMM.h
| M	src/libshogun/distributions/Histogram.cpp
| M	src/libshogun/distributions/LinearHMM.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortWordString.cpp
|  
* commit eefb6b25ff3350678f6047ec1370442d6b2abf1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 2 07:02:28 2009 +0000
| 
|     a little larank progess: now starts and crashes
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 295272848785f8f02659705909fbc94c63f078de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 31 21:41:22 2009 +0000
| 
|     fix a crasher when invalid chars occur in the file
| 
| M	src/libshogun/features/StringFileFeatures.h
|  
* commit a72851a4c20e05d834f1335ba69cefd206e2ad3e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 31 18:51:58 2009 +0000
| 
|     add StringFileFeatures (file based memory mapped string features)
| 
| A	examples/python_modular/features_string_file_char_modular.py
| M	src/NEWS
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/features/StringFileFeatures.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/modular/Features.i
|  
* commit a5563f75c5c7acdfe21a4b90001ca1478ff94797
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 30 06:56:14 2009 +0000
| 
|     fix compilation of modular interfaces by moving (at least temporarily) laranks kcache into larank
| 
| M	src/libshogun/classifier/svm/LaRank.cpp
| M	src/libshogun/classifier/svm/LaRank.h
| D	src/libshogun/classifier/svm/kcache.cpp
| D	src/libshogun/classifier/svm/kcache.h
|  
* commit 9f4ddb7c068d74218a820ed34fbd0b1ac936c059
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 30 06:41:26 2009 +0000
| 
|     enable testing for one class mkl, thanks gorden jemwa
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 669fbc9038ebc99c4382c43a4ed216c374585d4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 27 13:42:44 2009 +0000
| 
|     fill in x86_32 and fail when cplex is forefully enabled but not found
| 
| M	src/configure
|  
* commit 9f8e1a97ea0cf70d16a053fcf7908c06ec2a3598
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 26 05:26:34 2009 +0000
| 
|     integrate fast (one-pass) multiclass svm (LaRank) - only compiles for now
| 
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/svm/LaRank.cpp
| A	src/libshogun/classifier/svm/LaRank.h
| A	src/libshogun/classifier/svm/kcache.cpp
| A	src/libshogun/classifier/svm/kcache.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit 36db32d0209dc323018537b92a8c3dac82024049
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 25 21:40:01 2009 +0000
| 
|     let octave not write history on configure
| 
| M	src/configure
|  
* commit 0249429dfb82c853e81c865b637b5e78c2dbc7cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 13:39:30 2009 +0000
| 
|     now really prepare for the future :)
| 
| M	src/NEWS
|  
* commit 88026b26649d0079373357f66b1f086b4b89a3ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:47:12 2009 +0000
| 
|     path was right / make relase is done in releases/...
| 
| M	Makefile
|  
* commit 24729861dd26994726bea260aafcb1445650b05f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:41:11 2009 +0000
| 
|     Preparing for new Release shogun_0.9.0
| 
| M	Makefile
| M	doc/Doxyfile
|  
* commit 1df5fc46ca12dae221ade5074b55b414543735b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:40:56 2009 +0000
| 
|     revert news
| 
| M	src/NEWS
|  
* commit 2fc1b6fed25f6cab9ee4e0b85e6347104ccea44c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 12:19:23 2009 +0000
| 
|     update news for things to come
| 
| M	src/NEWS
|  
* commit 6a0e227e8ab91ea825fb9d8c7c5b05db34057594
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:33:33 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 3ab6a82049d87754ab942d9b609f833c23102ca6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:18:32 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 74e22fef554f2f972e3016f7bba65e264a54460e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 11:08:04 2009 +0000
| 
|     remove a static allocation and replace with new/delete
| 
| M	src/libshogun/kernel/PyramidChi2.cpp
|  
* commit 703c69b8df6c422630b622ad16548b1b8dc3d630
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 23 10:10:51 2009 +0000
| 
|     refurbished PyrmidChi2 kernel
| 
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
|  
* commit efef43cb590f38dfbfd948c155f12f50d3153bca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 09:48:35 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 547326c2934cc0b092da3849416a1b1bbdac6bfa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 09:44:24 2009 +0000
| 
|     get mkl_pseudo_dna example to run again
| 
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 5e926b9a1350cfaf12e128179765118806555d7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:20:36 2009 +0000
| 
|     update NEWS and README and add minor debug code to stringfeatures
| 
| M	src/NEWS
| M	src/README
| M	src/libshogun/features/StringFeatures.h
|  
* commit 809958b592b73d790f3e7b727fb5572053ded4be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:17:51 2009 +0000
| 
|     minor improvements on tutorial
| 
| M	doc/pages/ModularTutorial.mainpage
|  
* commit 0bd09b830ed8a36e39f8588c5fd5a3ef20773b6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 23 06:06:42 2009 +0000
| 
|     document missing parameter and rename member variable base_alphas to m_base_alphas
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
|  
* commit b80f25c601222b5879107f33b91bf6ffcf8158f9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:27:21 2009 +0000
| 
|     modified code for serialization support
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 16d87edeb7f1576c3e676e45f955462828201c67
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:26:28 2009 +0000
| 
|     got minimal serialization example working for the Gaussian kernel. doesn't work yet for most applications
| 
| M	examples/python_modular/serialization_svmlight_modular.py
|  
* commit 0b6708ba0d20085fdc6c0aa331634f376e4b818f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 01:25:17 2009 +0000
| 
|     minor adjustments
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit aa60238e0e7a5c842e0e881e971e1c2254643920
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 00:33:34 2009 +0000
| 
|     minor change
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit c58d8717c882cd43d0a507bfba724660acb8d847
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 23 00:24:48 2009 +0000
| 
|     added default constructors to some kernels to enable boost serialization. Works now for Gaussian kernel.
| 
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/SimpleKernel.cpp
| M	src/libshogun/kernel/SimpleKernel.h
|  
* commit 7733ec80700c6abb64902eb3bd73440b378f731d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 23:58:27 2009 +0000
| 
|     enabled serialization support for simple features by registering class
| 
| A	src/libshogun/features/SimpleFeatures.cpp
|  
* commit cba2467b24c96fc25d239a4689149fdd27759ac3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 23:34:05 2009 +0000
| 
|     rewritten considerable parts of the modular tutorial, updated example to include toy data, added small evaluation section
| 
| M	doc/pages/ModularTutorial.mainpage
|  
* commit 78eee7c0433a9c9dcc130d62cb775fa5d9e6aee0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 17:43:09 2009 +0000
| 
|     incorporate vojtechs comments
| 
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/StaticTutorial.mainpage
|  
* commit 14f6ee1feacc4cfdae1db665abc3f1619af88e07
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 17:28:32 2009 +0000
| 
|     wdk now deserializes
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 399d161c015d42a636dcfdeee27f611910260119
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 17:10:38 2009 +0000
| 
|     fixed typo
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit dd23fb5410cc409d647a053507a40fd621ab5637
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:58:08 2009 +0000
| 
|     not saving lhs/rhs in base class atm
| 
| M	src/libshogun/kernel/Kernel.h
|  
* commit b343660bcef101fc9e10e54e97f5d31f6e5f1bd8
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:56:29 2009 +0000
| 
|     adjusted load/save_construct_data to namespaces
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
|  
* commit bfeef60dff825ea508a49130ee78dd34e23139fc
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 16:56:02 2009 +0000
| 
|     adjusted load/save_construct_data to namespaces
| 
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit d21b10f206895bd5d175b16a6e8d9c0fca96e200
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 15:27:19 2009 +0000
| 
|     polish example a bit
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit fc529d6788ff523a76a753fab6864c591e461206
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Thu Oct 22 15:19:33 2009 +0000
| 
|     minor bugs fixed.
| 
| M	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| M	examples/matlab_and_octave/graphical/local_alignment_kernel.m
|  
* commit d61280bab8ac90e965dcf4d52fb5dfb2acea0565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 15:18:10 2009 +0000
| 
|     fix DA svm
| 
| M	examples/octave_modular/classifier_domainadaptationsvm_modular.m
|  
* commit 83ea7709a5e99cf7a46587e584d9fcf03fa19d56
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 13:31:32 2009 +0000
| 
|     added octave example for DASVM
| 
| A	examples/octave_modular/classifier_domainadaptationsvm_modular.m
|  
* commit 190532e127fb5f39e74d9108545145cec5d2419f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 13:30:49 2009 +0000
| 
|     fixed typo
| 
| M	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit 564e3fc70ad91fa7c0b36d051841297f97e1309e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 22 11:56:56 2009 +0000
| 
|     created example for DomainAdaptationSVM
| 
| A	examples/python_modular/classifier_domainadaptationsvm_modular.py
|  
* commit c25076df1a33e2a8dde7acaeb4b03aae159571a1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 22 10:02:55 2009 +0000
| 
|     -- example python mod is running now
| 
| D	examples/data/DynProg_example_py.dat
| A	examples/data/DynProg_example_py.dat.mat
| M	examples/python_modular/structure_dynprog_modular.py
|  
* commit 4ebdb6c9a587f99c000c0d6e9a84ab8055c6a626
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 22 03:28:48 2009 +0000
| 
|     remove note on how this example is compiled
| 
| M	examples/libshogun/classifier_mklmulticlass.cpp
|  
* commit 98dfa3f91141c7f9b0cf39fc9835b67ed192f511
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:23:17 2009 +0000
| 
|     incorporate sebastians change requests
| 
| M	doc/pages/Authors.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesStaticOctave.mainpage
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Methods.mainpage
|  
* commit ac619c2a8413480d22f1ee873a89df9f88e0571b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:12:39 2009 +0000
| 
|     rename also matlab example
| 
| D	examples/matlab_and_octave/dynprog.m
| A	examples/matlab_and_octave/structure_dynprog.m
|  
* commit 0c29d797b464df05c2f5520bac36fb41b2600a94
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 18:12:09 2009 +0000
| 
|     rename dynprog example to match naming conventions
| 
| D	examples/python_modular/dynprog.py
| A	examples/python_modular/structure_dynprog_modular.py
|  
* commit 36d65dd299fe9bf5ae5d965ba4f72cdb4047983d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 17:50:52 2009 +0000
| 
|     -- fixed typo
| 
| M	src/INSTALL
|  
* commit 9819b1ee493fa2ae0c4b12374cc057f6ed6fc225
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 17:50:49 2009 +0000
| 
|     - python modular example for DynProg added
| 
| A	examples/data/DynProg_example_py.dat
| A	examples/python_modular/dynprog.py
|  
* commit bd219b658bb6567c6f6af310dbf5d02992c15cd6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 17:28:00 2009 +0000
| 
|     fix a bug in file (wrong cast of int64 to int)
| 
| M	src/libshogun/lib/SimpleFile.h
|  
* commit 68754c4cf26f1a39f3b6599b835e5b81e5055cdc
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Oct 21 16:36:09 2009 +0000
| 
|     moved MKLMulticlass2glpk.{h,cpp} to MKLMultiClassGLPK.{h.cpp} and updated dependencies
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| D	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| D	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| A	src/libshogun/classifier/mkl/MKLMultiClassGLPK.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClassGLPK.h
|  
* commit 75d171e18465e98da4012b8e1dd626df6582f081
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:49:52 2009 +0000
| 
|     mention doxygen 1.6.0 as requirement for docs
| 
| M	src/INSTALL
|  
* commit 8731fdbfb89389b5d9784a23a304d23d87d20555
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:48:12 2009 +0000
| 
|     test for doxygen version 1.6.0 or higher
| 
| M	src/configure
|  
* commit 43ad9d6a4ae6a3c158ab4ef9863ef8089d6fea61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 15:19:00 2009 +0000
| 
|     move code to disable verbose glpk output into MKLMultiClass2glpkg.cpp
| 
| M	src/NEWS
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
|  
* commit 483e384c0da24e0f7078fa1698c257a9db425054
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Oct 21 14:54:08 2009 +0000
| 
|     updated documentation
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
|  
* commit e4897ac70804aeb57d6929ecee5062d671770a17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 21 12:42:38 2009 +0000
| 
|     document how to load strings from file or fasta file
| 
| M	examples/python_modular/features_string_file_modular.py
|  
* commit 438d045964ce3389c9588ec1c55b972970642b36
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 10:10:20 2009 +0000
| 
|     -- example for dynprog
| 
| A	examples/data/DynProg_example.dat
| A	examples/matlab_and_octave/dynprog.m
|  
* commit 767ba8b30dd7503a32ab765ca1ddfaa82e8d31fd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 21 10:10:12 2009 +0000
| 
|     -- more comments
| 
| M	src/libshogun/structure/DynProg.h
|  
* commit d902c2dce1e4030c29bdb642c508d8fe8e3e11ec
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 16:54:21 2009 +0000
| 
|     added retrain after serialization
| 
| M	examples/python_modular/serialization_svmlight_modular.py
|  
* commit fdf4c2f43e0c5444b32e5376aaaf8bf4f4256a4f
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 16:42:59 2009 +0000
| 
|     std_string now mapped correctly (again)
| 
| M	src/modular/SGBase.i
|  
* commit 85c190ac7e20ebdfd2e7fb073c5c6da0022d6cba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 16:13:06 2009 +0000
| 
|     enable pythoncode only with python
| 
| M	src/modular/SGBase.i
|  
* commit f2e2e046120271942bebebf06b8aa69fd7045bb2
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 15:37:40 2009 +0000
| 
|     some modifications to get shogun to compile with serialization enabled
| 
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 3ed2c56498ab2ad1105cfd368b3e981042efb7a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:53:39 2009 +0000
| 
|     fix a couple of issues with serialization
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/lib/common.h
|  
* commit 46fe4e7256e34f62b13f6a37d332fce0ccafc9eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:27:04 2009 +0000
| 
|     use global namespace for boost
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/common.h
|  
* commit 7b0530aa83029cb62081b6aafdbfa1c343093176
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Tue Oct 20 14:09:04 2009 +0000
| 
|     changes to seralization respecting namespaces
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/common.h
|  
* commit 7999e4621f9b3dcbb42cc729dbcf9d693b34fdd8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 14:08:52 2009 +0000
| 
|     document align
| 
| M	src/libshogun/features/SimpleFeatures.h
|  
* commit 12963322354483aca727a76178feaff496f72c6b
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 12:16:59 2009 +0000
| 
|     made example settings the same
| 
| M	examples/cmdline/mkl_multiclass.sg
| M	examples/matlab_and_octave/mkl_multiclass.m
| M	examples/octave_modular/mkl_multiclass_modular.m
| M	examples/r/mkl_multiclass.R
| M	examples/r_modular/mkl_multiclass_modular.R
|  
* commit 4c8beb167f6648c57dd86ca9251ed4d5a13f579c
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 12:11:25 2009 +0000
| 
|     now both examples have same settings and give the same result
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass_modular.py
|  
* commit 46674ca474ee12c54f9d7a0ee8376c1d084413a7
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Oct 20 11:59:36 2009 +0000
| 
|     changed KMeans to handle all distances with feature type F_DREAL:
|     D_BRAYCURTIS, D_CANBERRA, D_CHEBYSHEW, D_CHISQUARE, D_COSINE,
|     D_EUCLIDIAN, D_GEODESIC, D_JENSEN, D_MANHATTAN, D_MINKOWSKI,
|     D_SPARSEEUCLIDIAN,D_TANIMOTO
| 
| M	src/libshogun/clustering/KMeans.cpp
|  
* commit 200e25afdaaf602442efe2749e8d7490da627165
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Oct 20 11:44:50 2009 +0000
| 
|     changed method name in DistanceMachine
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
|  
* commit 1b79bafa6756ac94f042bde2a96379bfd99bca87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 11:25:43 2009 +0000
| 
|     don't document all structures
| 
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifMatrix.h
|  
* commit 1a4abd9f327692214112b2cc9d361485258943dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 11:11:05 2009 +0000
| 
|     rename modular examples to have a modular suffix (to allow for includes ...)
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ExamplesModularOctave.mainpage
| M	doc/pages/ExamplesModularPython.mainpage
| M	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ModularTutorial.mainpage
| D	examples/octave_modular/classifier_gmnpsvm.m
| A	examples/octave_modular/classifier_gmnpsvm_modular.m
| D	examples/octave_modular/classifier_gpbtsvm.m
| A	examples/octave_modular/classifier_gpbtsvm_modular.m
| D	examples/octave_modular/classifier_knn.m
| A	examples/octave_modular/classifier_knn_modular.m
| D	examples/octave_modular/classifier_lda.m
| A	examples/octave_modular/classifier_lda_modular.m
| D	examples/octave_modular/classifier_liblinear.m
| A	examples/octave_modular/classifier_liblinear_modular.m
| D	examples/octave_modular/classifier_libsvm.m
| D	examples/octave_modular/classifier_libsvm_minimal.m
| A	examples/octave_modular/classifier_libsvm_minimal_modular.m
| A	examples/octave_modular/classifier_libsvm_modular.m
| D	examples/octave_modular/classifier_libsvmmulticlass.m
| A	examples/octave_modular/classifier_libsvmmulticlass_modular.m
| D	examples/octave_modular/classifier_libsvmoneclass.m
| A	examples/octave_modular/classifier_libsvmoneclass_modular.m
| D	examples/octave_modular/classifier_mpdsvm.m
| A	examples/octave_modular/classifier_mpdsvm_modular.m
| D	examples/octave_modular/classifier_perceptron.m
| A	examples/octave_modular/classifier_perceptron_modular.m
| D	examples/octave_modular/classifier_subgradientsvm.m
| A	examples/octave_modular/classifier_subgradientsvm_modular.m
| D	examples/octave_modular/classifier_svmlight.m
| A	examples/octave_modular/classifier_svmlight_modular.m
| D	examples/octave_modular/classifier_svmlin.m
| A	examples/octave_modular/classifier_svmlin_modular.m
| D	examples/octave_modular/classifier_svmocas.m
| A	examples/octave_modular/classifier_svmocas_modular.m
| D	examples/octave_modular/classifier_svmsgd.m
| A	examples/octave_modular/classifier_svmsgd_modular.m
| D	examples/octave_modular/clustering_hierarchical.m
| A	examples/octave_modular/clustering_hierarchical_modular.m
| D	examples/octave_modular/clustering_kmeans.m
| A	examples/octave_modular/clustering_kmeans_modular.m
| D	examples/octave_modular/distance_braycurtis.m
| A	examples/octave_modular/distance_braycurtis_modular.m
| D	examples/octave_modular/distance_canberra.m
| A	examples/octave_modular/distance_canberra_modular.m
| D	examples/octave_modular/distance_canberraword.m
| A	examples/octave_modular/distance_canberraword_modular.m
| D	examples/octave_modular/distance_chebyshew.m
| A	examples/octave_modular/distance_chebyshew_modular.m
| D	examples/octave_modular/distance_chisquare.m
| A	examples/octave_modular/distance_chisquare_modular.m
| D	examples/octave_modular/distance_cosine.m
| A	examples/octave_modular/distance_cosine_modular.m
| D	examples/octave_modular/distance_euclidian.m
| A	examples/octave_modular/distance_euclidian_modular.m
| D	examples/octave_modular/distance_geodesic.m
| A	examples/octave_modular/distance_geodesic_modular.m
| D	examples/octave_modular/distance_hammingword.m
| A	examples/octave_modular/distance_hammingword_modular.m
| D	examples/octave_modular/distance_jensen.m
| A	examples/octave_modular/distance_jensen_modular.m
| D	examples/octave_modular/distance_manhatten.m
| A	examples/octave_modular/distance_manhatten_modular.m
| D	examples/octave_modular/distance_manhattenword.m
| A	examples/octave_modular/distance_manhattenword_modular.m
| D	examples/octave_modular/distance_minkowski.m
| A	examples/octave_modular/distance_minkowski_modular.m
| D	examples/octave_modular/distance_sparseeuclidian.m
| A	examples/octave_modular/distance_sparseeuclidian_modular.m
| D	examples/octave_modular/distance_tanimoto.m
| A	examples/octave_modular/distance_tanimoto_modular.m
| D	examples/octave_modular/distribution_histogram.m
| A	examples/octave_modular/distribution_histogram_modular.m
| D	examples/octave_modular/distribution_hmm.m
| A	examples/octave_modular/distribution_hmm_modular.m
| D	examples/octave_modular/distribution_linearhmm.m
| A	examples/octave_modular/distribution_linearhmm_modular.m
| D	examples/octave_modular/kernel_auc.m
| A	examples/octave_modular/kernel_auc_modular.m
| D	examples/octave_modular/kernel_chi2.m
| A	examples/octave_modular/kernel_chi2_modular.m
| D	examples/octave_modular/kernel_combined.m
| A	examples/octave_modular/kernel_combined_modular.m
| D	examples/octave_modular/kernel_commulongstring.m
| A	examples/octave_modular/kernel_commulongstring_modular.m
| D	examples/octave_modular/kernel_commwordstring.m
| A	examples/octave_modular/kernel_commwordstring_modular.m
| D	examples/octave_modular/kernel_const.m
| A	examples/octave_modular/kernel_const_modular.m
| D	examples/octave_modular/kernel_custom.m
| A	examples/octave_modular/kernel_custom_modular.m
| D	examples/octave_modular/kernel_diag.m
| A	examples/octave_modular/kernel_diag_modular.m
| D	examples/octave_modular/kernel_distance.m
| A	examples/octave_modular/kernel_distance_modular.m
| D	examples/octave_modular/kernel_fixeddegreestring.m
| A	examples/octave_modular/kernel_fixeddegreestring_modular.m
| D	examples/octave_modular/kernel_gaussian.m
| A	examples/octave_modular/kernel_gaussian_modular.m
| D	examples/octave_modular/kernel_gaussianshift.m
| A	examples/octave_modular/kernel_gaussianshift_modular.m
| D	examples/octave_modular/kernel_histogram.m
| A	examples/octave_modular/kernel_histogram_modular.m
| D	examples/octave_modular/kernel_linear.m
| A	examples/octave_modular/kernel_linear_modular.m
| D	examples/octave_modular/kernel_linearbyte.m
| A	examples/octave_modular/kernel_linearbyte_modular.m
| D	examples/octave_modular/kernel_linearstring.m
| A	examples/octave_modular/kernel_linearstring_modular.m
| D	examples/octave_modular/kernel_linearword.m
| A	examples/octave_modular/kernel_linearword_modular.m
| D	examples/octave_modular/kernel_localalignmentstring.m
| A	examples/octave_modular/kernel_localalignmentstring_modular.m
| D	examples/octave_modular/kernel_localityimprovedstring.m
| A	examples/octave_modular/kernel_localityimprovedstring_modular.m
| D	examples/octave_modular/kernel_matchwordstring.m
| A	examples/octave_modular/kernel_matchwordstring_modular.m
| D	examples/octave_modular/kernel_oligostring.m
| A	examples/octave_modular/kernel_oligostring_modular.m
| D	examples/octave_modular/kernel_poly.m
| A	examples/octave_modular/kernel_poly_modular.m
| D	examples/octave_modular/kernel_polymatchstring.m
| A	examples/octave_modular/kernel_polymatchstring_modular.m
| D	examples/octave_modular/kernel_polymatchwordstring.m
| A	examples/octave_modular/kernel_polymatchwordstring_modular.m
| D	examples/octave_modular/kernel_sigmoid.m
| A	examples/octave_modular/kernel_sigmoid_modular.m
| D	examples/octave_modular/kernel_simplelocalityimprovedstring.m
| A	examples/octave_modular/kernel_simplelocalityimprovedstring_modular.m
| D	examples/octave_modular/kernel_sparsegaussian.m
| A	examples/octave_modular/kernel_sparsegaussian_modular.m
| D	examples/octave_modular/kernel_sparselinear.m
| A	examples/octave_modular/kernel_sparselinear_modular.m
| D	examples/octave_modular/kernel_sparsepoly.m
| A	examples/octave_modular/kernel_sparsepoly_modular.m
| D	examples/octave_modular/kernel_top.m
| A	examples/octave_modular/kernel_top_modular.m
| D	examples/octave_modular/kernel_weightedcommwordstring.m
| A	examples/octave_modular/kernel_weightedcommwordstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreepositionstring.m
| A	examples/octave_modular/kernel_weighteddegreepositionstring_modular.m
| D	examples/octave_modular/kernel_weighteddegreestring.m
| A	examples/octave_modular/kernel_weighteddegreestring_modular.m
| D	examples/octave_modular/mkl_multiclass.m
| A	examples/octave_modular/mkl_multiclass_modular.m
| D	examples/octave_modular/preproc_commulongstring.m
| A	examples/octave_modular/preproc_commulongstring_modular.m
| D	examples/octave_modular/preproc_commwordstring.m
| A	examples/octave_modular/preproc_commwordstring_modular.m
| D	examples/octave_modular/preproc_logplusone.m
| A	examples/octave_modular/preproc_logplusone_modular.m
| D	examples/octave_modular/preproc_normone.m
| A	examples/octave_modular/preproc_normone_modular.m
| D	examples/octave_modular/preproc_prunevarsubmean.m
| A	examples/octave_modular/preproc_prunevarsubmean_modular.m
| D	examples/octave_modular/regression_krr.m
| A	examples/octave_modular/regression_krr_modular.m
| D	examples/octave_modular/regression_libsvr.m
| A	examples/octave_modular/regression_libsvr_modular.m
| D	examples/octave_modular/regression_svrlight.m
| A	examples/octave_modular/regression_svrlight_modular.m
| D	examples/python_modular/classifier_gmnpsvm.py
| A	examples/python_modular/classifier_gmnpsvm_modular.py
| D	examples/python_modular/classifier_gpbtsvm.py
| A	examples/python_modular/classifier_gpbtsvm_modular.py
| D	examples/python_modular/classifier_knn.py
| A	examples/python_modular/classifier_knn_modular.py
| D	examples/python_modular/classifier_lda.py
| A	examples/python_modular/classifier_lda_modular.py
| D	examples/python_modular/classifier_liblinear.py
| A	examples/python_modular/classifier_liblinear_modular.py
| D	examples/python_modular/classifier_libsvm.py
| D	examples/python_modular/classifier_libsvm_minimal.py
| A	examples/python_modular/classifier_libsvm_minimal_modular.py
| A	examples/python_modular/classifier_libsvm_modular.py
| D	examples/python_modular/classifier_libsvmmulticlass.py
| A	examples/python_modular/classifier_libsvmmulticlass_modular.py
| D	examples/python_modular/classifier_libsvmoneclass.py
| A	examples/python_modular/classifier_libsvmoneclass_modular.py
| D	examples/python_modular/classifier_mpdsvm.py
| A	examples/python_modular/classifier_mpdsvm_modular.py
| D	examples/python_modular/classifier_perceptron.py
| A	examples/python_modular/classifier_perceptron_modular.py
| D	examples/python_modular/classifier_subgradientsvm.py
| A	examples/python_modular/classifier_subgradientsvm_modular.py
| D	examples/python_modular/classifier_svmlight.py
| D	examples/python_modular/classifier_svmlight_batch_linadd.py
| A	examples/python_modular/classifier_svmlight_batch_linadd_modular.py
| D	examples/python_modular/classifier_svmlight_linear_term.py
| A	examples/python_modular/classifier_svmlight_linear_term_modular.py
| A	examples/python_modular/classifier_svmlight_modular.py
| D	examples/python_modular/classifier_svmlin.py
| A	examples/python_modular/classifier_svmlin_modular.py
| D	examples/python_modular/classifier_svmocas.py
| A	examples/python_modular/classifier_svmocas_modular.py
| D	examples/python_modular/classifier_svmsgd.py
| A	examples/python_modular/classifier_svmsgd_modular.py
| D	examples/python_modular/clustering_hierarchical.py
| A	examples/python_modular/clustering_hierarchical_modular.py
| D	examples/python_modular/clustering_kmeans.py
| A	examples/python_modular/clustering_kmeans_modular.py
| D	examples/python_modular/custom_kernel.py
| A	examples/python_modular/custom_kernel_modular.py
| D	examples/python_modular/distance_braycurtis.py
| A	examples/python_modular/distance_braycurtis_modular.py
| D	examples/python_modular/distance_canberra.py
| A	examples/python_modular/distance_canberra_modular.py
| D	examples/python_modular/distance_canberraword.py
| A	examples/python_modular/distance_canberraword_modular.py
| D	examples/python_modular/distance_chebyshew.py
| A	examples/python_modular/distance_chebyshew_modular.py
| D	examples/python_modular/distance_chisquare.py
| A	examples/python_modular/distance_chisquare_modular.py
| D	examples/python_modular/distance_cosine.py
| A	examples/python_modular/distance_cosine_modular.py
| D	examples/python_modular/distance_euclidian.py
| A	examples/python_modular/distance_euclidian_modular.py
| D	examples/python_modular/distance_geodesic.py
| A	examples/python_modular/distance_geodesic_modular.py
| D	examples/python_modular/distance_hammingword.py
| A	examples/python_modular/distance_hammingword_modular.py
| D	examples/python_modular/distance_jensen.py
| A	examples/python_modular/distance_jensen_modular.py
| D	examples/python_modular/distance_manhatten.py
| A	examples/python_modular/distance_manhatten_modular.py
| D	examples/python_modular/distance_manhattenword.py
| A	examples/python_modular/distance_manhattenword_modular.py
| D	examples/python_modular/distance_minkowski.py
| A	examples/python_modular/distance_minkowski_modular.py
| D	examples/python_modular/distance_normsquared.py
| A	examples/python_modular/distance_normsquared_modular.py
| D	examples/python_modular/distance_sparseeuclidean.py
| A	examples/python_modular/distance_sparseeuclidean_modular.py
| D	examples/python_modular/distance_tanimoto.py
| A	examples/python_modular/distance_tanimoto_modular.py
| D	examples/python_modular/distribution_histogram.py
| A	examples/python_modular/distribution_histogram_modular.py
| D	examples/python_modular/distribution_hmm.py
| A	examples/python_modular/distribution_hmm_modular.py
| D	examples/python_modular/distribution_linear_hmm.py
| A	examples/python_modular/distribution_linear_hmm_modular.py
| D	examples/python_modular/features_read_svmlight_format.py
| A	examples/python_modular/features_read_svmlight_format_modular.py
| D	examples/python_modular/features_simple.py
| D	examples/python_modular/features_simple_byte.py
| A	examples/python_modular/features_simple_byte_modular.py
| D	examples/python_modular/features_simple_longint.py
| A	examples/python_modular/features_simple_longint_modular.py
| A	examples/python_modular/features_simple_modular.py
| D	examples/python_modular/features_simple_real.py
| A	examples/python_modular/features_simple_real_modular.py
| D	examples/python_modular/features_sparse.py
| A	examples/python_modular/features_sparse_modular.py
| D	examples/python_modular/features_string_char.py
| A	examples/python_modular/features_string_char_modular.py
| D	examples/python_modular/features_string_file.py
| A	examples/python_modular/features_string_file_modular.py
| D	examples/python_modular/features_string_sliding_window.py
| A	examples/python_modular/features_string_sliding_window_modular.py
| D	examples/python_modular/features_string_ulong.py
| A	examples/python_modular/features_string_ulong_modular.py
| D	examples/python_modular/features_string_word.py
| A	examples/python_modular/features_string_word_modular.py
| D	examples/python_modular/kernel_auc.py
| A	examples/python_modular/kernel_auc_modular.py
| D	examples/python_modular/kernel_chi2.py
| A	examples/python_modular/kernel_chi2_modular.py
| D	examples/python_modular/kernel_combined.py
| A	examples/python_modular/kernel_combined_modular.py
| D	examples/python_modular/kernel_comm_ulong_string.py
| A	examples/python_modular/kernel_comm_ulong_string_modular.py
| D	examples/python_modular/kernel_comm_word_string.py
| A	examples/python_modular/kernel_comm_word_string_modular.py
| D	examples/python_modular/kernel_const.py
| A	examples/python_modular/kernel_const_modular.py
| D	examples/python_modular/kernel_custom.py
| A	examples/python_modular/kernel_custom_modular.py
| D	examples/python_modular/kernel_diag.py
| A	examples/python_modular/kernel_diag_modular.py
| D	examples/python_modular/kernel_distance.py
| A	examples/python_modular/kernel_distance_modular.py
| D	examples/python_modular/kernel_fisher.py
| A	examples/python_modular/kernel_fisher_modular.py
| D	examples/python_modular/kernel_fixed_degree_string.py
| A	examples/python_modular/kernel_fixed_degree_string_modular.py
| D	examples/python_modular/kernel_gaussian.py
| A	examples/python_modular/kernel_gaussian_modular.py
| D	examples/python_modular/kernel_gaussian_shift.py
| A	examples/python_modular/kernel_gaussian_shift_modular.py
| D	examples/python_modular/kernel_histogram_word_string.py
| A	examples/python_modular/kernel_histogram_word_string_modular.py
| D	examples/python_modular/kernel_linear.py
| D	examples/python_modular/kernel_linear_byte.py
| A	examples/python_modular/kernel_linear_byte_modular.py
| A	examples/python_modular/kernel_linear_modular.py
| D	examples/python_modular/kernel_linear_string.py
| A	examples/python_modular/kernel_linear_string_modular.py
| D	examples/python_modular/kernel_linear_word.py
| A	examples/python_modular/kernel_linear_word_modular.py
| D	examples/python_modular/kernel_local_alignment_string.py
| A	examples/python_modular/kernel_local_alignment_string_modular.py
| D	examples/python_modular/kernel_locality_improved_string.py
| A	examples/python_modular/kernel_locality_improved_string_modular.py
| D	examples/python_modular/kernel_match_word_string.py
| A	examples/python_modular/kernel_match_word_string_modular.py
| D	examples/python_modular/kernel_oligo_string.py
| A	examples/python_modular/kernel_oligo_string_modular.py
| D	examples/python_modular/kernel_poly.py
| D	examples/python_modular/kernel_poly_match_string.py
| A	examples/python_modular/kernel_poly_match_string_modular.py
| D	examples/python_modular/kernel_poly_match_word_string.py
| A	examples/python_modular/kernel_poly_match_word_string_modular.py
| A	examples/python_modular/kernel_poly_modular.py
| D	examples/python_modular/kernel_salzberg_word_string.py
| A	examples/python_modular/kernel_salzberg_word_string_modular.py
| D	examples/python_modular/kernel_sigmoid.py
| A	examples/python_modular/kernel_sigmoid_modular.py
| D	examples/python_modular/kernel_simple_locality_improved_string.py
| A	examples/python_modular/kernel_simple_locality_improved_string_modular.py
| D	examples/python_modular/kernel_sparse_gaussian.py
| A	examples/python_modular/kernel_sparse_gaussian_modular.py
| D	examples/python_modular/kernel_sparse_linear.py
| A	examples/python_modular/kernel_sparse_linear_modular.py
| D	examples/python_modular/kernel_sparse_poly.py
| A	examples/python_modular/kernel_sparse_poly_modular.py
| D	examples/python_modular/kernel_top.py
| A	examples/python_modular/kernel_top_modular.py
| D	examples/python_modular/kernel_weighted_comm_word_string.py
| A	examples/python_modular/kernel_weighted_comm_word_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_position_string.py
| A	examples/python_modular/kernel_weighted_degree_position_string_modular.py
| D	examples/python_modular/kernel_weighted_degree_string.py
| A	examples/python_modular/kernel_weighted_degree_string_modular.py
| D	examples/python_modular/mkl_multiclass.py
| A	examples/python_modular/mkl_multiclass_modular.py
| D	examples/python_modular/preproc_logplusone.py
| A	examples/python_modular/preproc_logplusone_modular.py
| D	examples/python_modular/preproc_normone.py
| A	examples/python_modular/preproc_normone_modular.py
| D	examples/python_modular/preproc_prunevarsubmean.py
| A	examples/python_modular/preproc_prunevarsubmean_modular.py
| D	examples/python_modular/preproc_sortulongstring.py
| A	examples/python_modular/preproc_sortulongstring_modular.py
| D	examples/python_modular/preproc_sortwordstring.py
| A	examples/python_modular/preproc_sortwordstring_modular.py
| D	examples/python_modular/regression_krr.py
| A	examples/python_modular/regression_krr_modular.py
| D	examples/python_modular/regression_libsvr.py
| A	examples/python_modular/regression_libsvr_modular.py
| D	examples/python_modular/regression_svrlight.py
| A	examples/python_modular/regression_svrlight_modular.py
| D	examples/python_modular/serialization_svmlight.py
| A	examples/python_modular/serialization_svmlight_modular.py
| D	examples/python_modular/tests_check_commwordkernel_memleak.py
| A	examples/python_modular/tests_check_commwordkernel_memleak_modular.py
| D	examples/r_modular/classifier_gmnpsvm.R
| A	examples/r_modular/classifier_gmnpsvm_modular.R
| D	examples/r_modular/classifier_gpbtsvm.R
| A	examples/r_modular/classifier_gpbtsvm_modular.R
| D	examples/r_modular/classifier_knn.R
| A	examples/r_modular/classifier_knn_modular.R
| D	examples/r_modular/classifier_lda.R
| A	examples/r_modular/classifier_lda_modular.R
| D	examples/r_modular/classifier_liblinear.R
| A	examples/r_modular/classifier_liblinear_modular.R
| D	examples/r_modular/classifier_libsvm.R
| A	examples/r_modular/classifier_libsvm_modular.R
| D	examples/r_modular/classifier_libsvmmulticlass.R
| A	examples/r_modular/classifier_libsvmmulticlass_modular.R
| D	examples/r_modular/classifier_libsvmoneclass.R
| A	examples/r_modular/classifier_libsvmoneclass_modular.R
| D	examples/r_modular/classifier_mpdsvm.R
| A	examples/r_modular/classifier_mpdsvm_modular.R
| D	examples/r_modular/classifier_perceptron.R
| A	examples/r_modular/classifier_perceptron_modular.R
| D	examples/r_modular/classifier_subgradientsvm.R
| A	examples/r_modular/classifier_subgradientsvm_modular.R
| D	examples/r_modular/classifier_svmlight.R
| A	examples/r_modular/classifier_svmlight_modular.R
| D	examples/r_modular/classifier_svmlin.R
| A	examples/r_modular/classifier_svmlin_modular.R
| D	examples/r_modular/classifier_svmocas.R
| A	examples/r_modular/classifier_svmocas_modular.R
| D	examples/r_modular/classifier_svmsgd.R
| A	examples/r_modular/classifier_svmsgd_modular.R
| D	examples/r_modular/distribution_histogram.R
| A	examples/r_modular/distribution_histogram_modular.R
| D	examples/r_modular/distribution_hmm.R
| A	examples/r_modular/distribution_hmm_modular.R
| D	examples/r_modular/distribution_linearhmm.R
| A	examples/r_modular/distribution_linearhmm_modular.R
| D	examples/r_modular/kernel_auc.R
| A	examples/r_modular/kernel_auc_modular.R
| D	examples/r_modular/kernel_chi2.R
| A	examples/r_modular/kernel_chi2_modular.R
| D	examples/r_modular/kernel_combined.R
| A	examples/r_modular/kernel_combined_modular.R
| D	examples/r_modular/kernel_commulongstring.R
| A	examples/r_modular/kernel_commulongstring_modular.R
| D	examples/r_modular/kernel_commwordstring.R
| A	examples/r_modular/kernel_commwordstring_modular.R
| D	examples/r_modular/kernel_const.R
| A	examples/r_modular/kernel_const_modular.R
| D	examples/r_modular/kernel_custom.R
| A	examples/r_modular/kernel_custom_modular.R
| D	examples/r_modular/kernel_diag.R
| A	examples/r_modular/kernel_diag_modular.R
| D	examples/r_modular/kernel_distancetokernel.R
| A	examples/r_modular/kernel_distancetokernel_modular.R
| D	examples/r_modular/kernel_fixeddegreestring.R
| A	examples/r_modular/kernel_fixeddegreestring_modular.R
| D	examples/r_modular/kernel_gaussian.R
| A	examples/r_modular/kernel_gaussian_modular.R
| D	examples/r_modular/kernel_gaussianshift.R
| A	examples/r_modular/kernel_gaussianshift_modular.R
| D	examples/r_modular/kernel_histogramword.R
| A	examples/r_modular/kernel_histogramword_modular.R
| D	examples/r_modular/kernel_linear.R
| A	examples/r_modular/kernel_linear_modular.R
| D	examples/r_modular/kernel_linearbyte.R
| A	examples/r_modular/kernel_linearbyte_modular.R
| D	examples/r_modular/kernel_linearstring.R
| A	examples/r_modular/kernel_linearstring_modular.R
| D	examples/r_modular/kernel_linearword.R
| A	examples/r_modular/kernel_linearword_modular.R
| D	examples/r_modular/kernel_localalignmentstring.R
| A	examples/r_modular/kernel_localalignmentstring_modular.R
| D	examples/r_modular/kernel_localityimprovedstring.R
| A	examples/r_modular/kernel_localityimprovedstring_modular.R
| D	examples/r_modular/kernel_oligostring.R
| A	examples/r_modular/kernel_oligostring_modular.R
| D	examples/r_modular/kernel_poly.R
| A	examples/r_modular/kernel_poly_modular.R
| D	examples/r_modular/kernel_polymatchstring.R
| A	examples/r_modular/kernel_polymatchstring_modular.R
| D	examples/r_modular/kernel_polymatchword.R
| A	examples/r_modular/kernel_polymatchword_modular.R
| D	examples/r_modular/kernel_sigmoid.R
| A	examples/r_modular/kernel_sigmoid_modular.R
| D	examples/r_modular/kernel_simplelocalityimprovedstring.R
| A	examples/r_modular/kernel_simplelocalityimprovedstring_modular.R
| D	examples/r_modular/kernel_sparsegaussian.R
| A	examples/r_modular/kernel_sparsegaussian_modular.R
| D	examples/r_modular/kernel_sparselinear.R
| A	examples/r_modular/kernel_sparselinear_modular.R
| D	examples/r_modular/kernel_sparsepoly.R
| A	examples/r_modular/kernel_sparsepoly_modular.R
| D	examples/r_modular/kernel_topfisher.R
| A	examples/r_modular/kernel_topfisher_modular.R
| D	examples/r_modular/kernel_weightedcommwordstring.R
| A	examples/r_modular/kernel_weightedcommwordstring_modular.R
| D	examples/r_modular/kernel_weighteddegreepositionstring.R
| A	examples/r_modular/kernel_weighteddegreepositionstring_modular.R
| D	examples/r_modular/kernel_weighteddegreestring.R
| A	examples/r_modular/kernel_weighteddegreestring_modular.R
| D	examples/r_modular/kernel_wordmatch.R
| A	examples/r_modular/kernel_wordmatch_modular.R
| D	examples/r_modular/mkl_multiclass.R
| A	examples/r_modular/mkl_multiclass_modular.R
| D	examples/r_modular/preproc_commulongstring.R
| A	examples/r_modular/preproc_commulongstring_modular.R
| D	examples/r_modular/preproc_commwordstring.R
| A	examples/r_modular/preproc_commwordstring_modular.R
| D	examples/r_modular/preproc_logplusone.R
| A	examples/r_modular/preproc_logplusone_modular.R
| D	examples/r_modular/preproc_normone.R
| A	examples/r_modular/preproc_normone_modular.R
| D	examples/r_modular/preproc_prunevarsubmean.R
| A	examples/r_modular/preproc_prunevarsubmean_modular.R
|  
* commit 6ec41ddee54d18ac65db24f5a67eb1fd8d5a7959
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 09:40:50 2009 +0000
| 
|     rename examples in libshogun and include them in doc
| 
| M	doc/Doxyfile
| M	doc/DoxygenLayout.xml
| M	doc/insert_examples.py
| M	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesLibshogun.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/Screenshots.mainpage
| M	doc/pages/Tutorial.mainpage
| M	examples/libshogun/Makefile
| A	examples/libshogun/basic_minimal.cpp
| A	examples/libshogun/classifier_libsvm.cpp
| A	examples/libshogun/classifier_minimal_svm.cpp
| A	examples/libshogun/classifier_mklmulticlass.cpp
| D	examples/libshogun/dyn_int.cpp
| D	examples/libshogun/gc_array.cpp
| D	examples/libshogun/indirect_object.cpp
| A	examples/libshogun/kernel_gaussian.cpp
| A	examples/libshogun/kernel_revlin.cpp
| A	examples/libshogun/library_dyn_int.cpp
| A	examples/libshogun/library_gc_array.cpp
| A	examples/libshogun/library_indirect_object.cpp
| D	examples/libshogun/minimal.cpp
| D	examples/libshogun/minimal_svm.cpp
| D	examples/libshogun/mklmulticlass.cpp
| D	examples/libshogun/rbf_kernel.cpp
| D	examples/libshogun/rbf_svm.cpp
| D	examples/libshogun/revlin_kernel.cpp
|  
* commit 2c473f2c321b6adb4ea0f2d62a6028021db7004f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Oct 20 09:11:12 2009 +0000
| 
|     changed examples slightly
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass.py
|  
* commit f3b105e9d516de3b355b220ce0a74a0d9964d667
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 20 08:53:24 2009 +0000
| 
|     generate webpages with examples
| 
| M	doc/Makefile
| A	doc/insert_examples.py
| M	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesModularOctave.mainpage
| A	doc/pages/ExamplesModularPython.mainpage
| A	doc/pages/ExamplesModularR.mainpage
| M	doc/pages/ExamplesStaticCmdline.mainpage
| A	doc/pages/ExamplesStaticOctave.mainpage
| A	doc/pages/ExamplesStaticPython.mainpage
| A	doc/pages/ExamplesStaticR.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	examples/cmdline/classifier_libsvm.sg
| D	examples/cmdline/libsvm.sg
| A	examples/octave_modular/classifier_libsvm_minimal.m
| D	examples/octave_modular/libsvm.m
| A	examples/python/mkl_regression.py
| A	examples/python/mkl_twoclass.py
| D	examples/python/test_mkl.py
| D	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/classifier_libsvm_minimal.py
| A	examples/python_modular/features_read_svmlight_format.py
| M	examples/python_modular/features_simple.py
| D	examples/python_modular/libsvm.py
| D	examples/python_modular/numpy_commands.py
| D	examples/python_modular/read_svmlight_format.py
| A	examples/python_modular/tests_check_commwordkernel_memleak.py
| M	src/configure
| M	src/libshogunui/GUIClassifier.cpp
| M	src/matlab/MatlabInterface.cpp
|  
* commit ddf6a29d582a21a16e1c3a6879536fbff42fdc23
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 23:10:06 2009 +0000
| 
|     changed computation of distance values
| 
| M	src/libshogun/classifier/KNN.cpp
|  
* commit deef249a1b2fbd1ed397c921e1a364f959ffbe87
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 22:57:11 2009 +0000
| 
|     added distances method (pthread)
| 
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
|  
* commit da1cdb40c15ff28d9fdf07de853635191102d95c
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Oct 19 22:45:11 2009 +0000
| 
|     added replace_rhs method to temporary replace rhs
| 
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
|  
* commit f4686b42560d672932f1a754287a522822223221
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 19 18:34:34 2009 +0000
| 
|     initialized pv and C to avoid problem with multiclass svm
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 9a67cbebfe64a74adc483473d31b2830cb28e2cc
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 14:46:05 2009 +0000
| 
|     changed third kernel from Chi2Kernel to PolyKernel now python example works
| 
| M	examples/octave_modular/mkl_multiclass.m
| M	examples/python_modular/mkl_multiclass.py
| M	examples/r_modular/mkl_multiclass.R
|  
* commit 43a56b562da93c9b7f16f92e4b17e7890010db0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 13:51:08 2009 +0000
| 
|     example online help
| 
| A	doc/pages/Examples.mainpage
| A	doc/pages/ExamplesStaticCmdline.mainpage
|  
* commit f8c4ffbd5a140c9a5032e34cbe28f1d0746b337f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 13:45:58 2009 +0000
| 
|     updated example
| 
| M	doc/pages/Documentation.mainpage
| M	examples/octave_modular/mkl_multiclass.m
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/lib/DynInt.h
|  
* commit 3054a0ceeef17f80ed39d4e1cf3c6b1a5dba2f3a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 10:43:47 2009 +0000
| 
|     this example crashes
| 
| M	examples/python_modular/mkl_multiclass.py
|  
* commit 0d2a5bc2ac70cb4ff1489ade2689ce23d2c7046f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Oct 19 10:30:49 2009 +0000
| 
|     python nonmodular example works
| 
| M	examples/python/mkl_multiclass.py
|  
* commit 34aef1c960b009cea54a9bfa79ac5dfa8ab87cef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 05:37:24 2009 +0000
| 
|     - move HMM.h etc into distributions
|     - comment log_derivative computation to speed up running of examples
|     - fix sparse features, now everything (except multicalss svm) works again in
|     all interfaces
|     - update news
| 
| M	README
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	examples/octave_modular/distribution_histogram.m
| M	examples/python_modular/distribution_histogram.py
| M	src/NEWS
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| A	src/libshogun/distributions/GHMM.cpp
| A	src/libshogun/distributions/GHMM.h
| A	src/libshogun/distributions/HMM.cpp
| A	src/libshogun/distributions/HMM.h
| A	src/libshogun/distributions/Histogram.cpp
| A	src/libshogun/distributions/Histogram.h
| A	src/libshogun/distributions/LinearHMM.cpp
| A	src/libshogun/distributions/LinearHMM.h
| D	src/libshogun/distributions/histogram/Histogram.cpp
| D	src/libshogun/distributions/histogram/Histogram.h
| D	src/libshogun/distributions/hmm/GHMM.cpp
| D	src/libshogun/distributions/hmm/GHMM.h
| D	src/libshogun/distributions/hmm/HMM.cpp
| D	src/libshogun/distributions/hmm/HMM.h
| D	src/libshogun/distributions/hmm/LinearHMM.cpp
| D	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogunui/GUIHMM.h
| M	src/modular/Distribution.i
| M	src/python_modular/swig_typemaps.i
|  
* commit 42d47fd5dc6309e485d8cf38a33e15983f4db9ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 19 05:09:10 2009 +0000
| 
|     get modular string featurs back to work in modular interface, compile with -fvirtual
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/modular/Features.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/sg_print_functions.cpp
|  
* commit 08aa898cb0555b84ac605e0be2cc097b6fc95c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 21:23:42 2009 +0000
| 
|     get modular interfaces back to work
| 
| M	examples/python_modular/mkl_multiclass.py
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.h
| M	src/modular/Features.i
| M	src/modular/Library.i
| M	src/modular/SGBase.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	src/r_modular/swig_typemaps.i
|  
* commit bf566ffcf48fbb8f3130b4151ec4d894edbc82b7
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 18:17:07 2009 +0000
| 
|     bugfix
| 
| M	examples/python/mkl_multiclass.py
| M	examples/python_modular/mkl_multiclass.py
|  
* commit d7f914ff5c8069cdcf43200fb5d478a0ebda44db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 18:06:39 2009 +0000
| 
|     minor fix
| 
| M	examples/octave_modular/mkl_multiclass.m
|  
* commit 73264dbc9af373ed385c3cba1db4393f8d25e6f5
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 18:06:12 2009 +0000
| 
|     example fro MKLMultiClass not tested yet
| 
| M	examples/matlab_and_octave/mkl_multiclass.m
| A	examples/python/mkl_multiclass.py
| A	examples/python_modular/mkl_multiclass.py
| A	examples/r/mkl_multiclass.R
| A	examples/r_modular/mkl_multiclass.R
|  
* commit 57872323cefc992572a2a1a6e9db1d9619e3f9b7
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:47:38 2009 +0000
| 
|     ocatave_modular example does not work yet
| 
| A	examples/octave_modular/mkl_multiclass.m
|  
* commit 5df2f1bb45a54a087f6885d8f93c1640f920ad52
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:30:25 2009 +0000
| 
|     example works for CMKLMultiClass
| 
| M	examples/matlab_and_octave/mkl_multiclass.m
|  
* commit 324f47bd4c241660c942d7499053e2086d479a04
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 17:00:04 2009 +0000
| 
|     added onek ernel more and some options to example
| 
| M	examples/cmdline/mkl_multiclass.sg
|  
* commit b3217db4cade2f3f14d6f6e5dc369a8bfbdc65c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 16:53:51 2009 +0000
| 
|     use a new train function for mkl multiclass in ui
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/SGInterface.cpp
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/kernel.m
|  
* commit b6e79e42bd94e3a09b29a37ff1b0fb0d005577ea
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 16:52:38 2009 +0000
| 
|     fixed a bug in GUIClassifier.cpp, CMKLMultiClass is now called via train_Svm() and not train_mkl because it is not derived from CMKL in order to avoid multiple inheritance
| 
| M	examples/cmdline/mkl_multiclass.sg
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit f6338278f457cecbe7f9a6e1ef1cde0226466856
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 18 16:18:46 2009 +0000
| 
|     rename MCSVM to scattersvm / mark it experiemntal
| 
| M	src/libshogun/classifier/Classifier.h
| D	src/libshogun/classifier/svm/MCSVM.cpp
| D	src/libshogun/classifier/svm/MCSVM.h
| A	src/libshogun/classifier/svm/ScatterSVM.cpp
| A	src/libshogun/classifier/svm/ScatterSVM.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit dac2c2fac06c7afe3b78eb27921f508aea2df709
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 15:49:09 2009 +0000
| 
|     temporary check in
| 
| A	examples/cmdline/mkl_multiclass.sg
| M	examples/matlab_and_octave/mkl_multiclass.m
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 090d63d749c5680e591fcfe3f5552060269a647f
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 12:57:38 2009 +0000
| 
|     added
|     using namespace shogun;
|     in order to fix a compitle time error from this file
| 
| M	src/matlab/MatlabInterface.h
|  
* commit 59d392a6e523ade3f343160da4d9d7efdc13d0fb
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Sun Oct 18 12:18:08 2009 +0000
| 
|     format changes
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
|  
* commit 896ef33b0f94947e715c4ed779bcdd3bb5315ba1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 17 07:52:00 2009 +0000
| 
|     move remaining classes/functions/variables into shogun namespace
| 
| M	examples/libshogun/minimal.cpp
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/gpdt.cpp
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.h
| M	src/libshogun/classifier/svm/gpm.cpp
| M	src/libshogun/classifier/svm/gpm.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| M	src/libshogun/classifier/svm/libocas_common.h
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/pr_loqo.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
| M	src/libshogun/classifier/svm/qpssvmlib.h
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/lib/memory.h
| M	src/modular/Library.i
| M	src/modular/SGBase.i
|  
* commit e426d1af732d89f2869f85600928a978b410c051
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:49:22 2009 +0000
| 
|     minor documentation fixes
| 
| M	doc/Doxyfile
| M	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1cbfe87bf5cd3d07b8a58f8ab5438fc32476b2c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:38:51 2009 +0000
| 
|     namespaces for the remaining classes
| 
| M	examples/python_modular/classifier_gmnpsvm.py
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/lib/Cplex.cpp
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynInt.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/IndirectObject.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 8dc09a98f61ab6813ca3212515fdb455781e5607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:31:44 2009 +0000
| 
|     update examples to work with namespaces
| 
| M	examples/libshogun/dyn_int.cpp
| M	examples/libshogun/gc_array.cpp
| M	examples/libshogun/indirect_object.cpp
| M	examples/libshogun/minimal_svm.cpp
| M	examples/libshogun/rbf_kernel.cpp
| M	examples/libshogun/rbf_svm.cpp
| M	examples/libshogun/revlin_kernel.cpp
|  
* commit 451d618de64b5fb5a55a88f8c814807262ce5a7c
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 18:23:03 2009 +0000
| 
|     final modifications after namespace changes
| 
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit de7f79624b5ebc57493f451d09f05a899d0f9b2d
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 18:14:02 2009 +0000
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| A	src/libshogun/classifier/mkl/MKLMultiClass2glpk.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClass2glpk.h
|  
* commit ddb6d4de43268ea4f5f3f6a7ffae6e3de842905e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 18:08:16 2009 +0000
| 
|     - modular interfaces compile now (at least)
|     - remove load/save_init in preprocs
| 
| M	src/NEWS
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/modular/Distance.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/SGBase.i
|  
* commit 27fe50b0c09348cd0872295f68ef43c58e3a4865
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:18:47 2009 +0000
| 
|     get static interfaces back to work
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/GUIHMM.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/GUILabels.h
| M	src/libshogunui/GUIMath.cpp
| M	src/libshogunui/GUIMath.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/GUITime.cpp
| M	src/libshogunui/GUITime.h
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.h
|  
* commit 056f3c3f5b0d9e814ab88b4277e0260cb45e6b3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:03:20 2009 +0000
| 
|     move feature types into separate file
| 
| A	src/libshogun/features/FeatureTypes.h
|  
* commit 67bf1d5bb777421945ced63247db5c4d704b99b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 17:02:32 2009 +0000
| 
|     WARNING DON'T SVN UP, this introduces namespaces in libshogun and as a consequence breaks *all* static+modular interfaces
| 
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/DistanceMachine.cpp
| M	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/mkl/MKLClassification.cpp
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/mkl/MKLOneClass.cpp
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnplib.cpp
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gnpplib.cpp
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/distributions/Distribution.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.cpp
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.cpp
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.cpp
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.cpp
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/OligoStringKernel.cpp
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.cpp
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.cpp
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SimplePreProc.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/Regression.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/MKLRegression.cpp
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/IntronList.cpp
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifArray.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogun/structure/PlifMatrix.cpp
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/modular/SGBase.i
| M	src/python_modular/sg_print_functions.cpp
|  
* commit 405ee801affc87b441e38c344bba72bd4124ca93
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 16:53:28 2009 +0000
| 
|     fixed warning
| 
| M	src/libshogun/classifier/svm/SVM.cpp
|  
* commit 4afb327d81dbd10de741356476ea4b2390a30864
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 16:52:41 2009 +0000
| 
|     ported code of custom linear term enabled LibSVM to trunk
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit a53895c3af56818b581a38fa9af7f338e52d6e36
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 16:49:49 2009 +0000
| 
|     added some comments to main class
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit 0dcaf4f0c1bfa10aec670a7f6156970f534aef99
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Oct 16 16:01:35 2009 +0000
| 
|     started to clean it up, not finished yet
| 
| M	examples/libshogun/mklmulticlass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
|  
* commit bd0874a114e82ce4b8660c0719c68b9d4fb78473
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 13:30:55 2009 +0000
| 
|     adjusted to new linear_term format
| 
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit ad1420a67a80fed675329f06aee17f78e8d0bba0
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 13:27:40 2009 +0000
| 
|     moved linear_term (including getter/setter) from SVM_light to base class SVM, as the code will also be used by LibSVM
| 
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| M	src/libshogun/classifier/svm/DomainAdaptationSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
|  
* commit 5bbd2214a2e20fb90aa5cefc943302dec04e4203
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 12:41:49 2009 +0000
| 
|     included STL
| 
| M	src/libshogun/base/SGObject.h
|  
* commit 24b002b1586d900f6398ecef67df305c87b8d245
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Fri Oct 16 12:40:13 2009 +0000
| 
|     included bindings for STL structures (std::vector)
| 
| M	src/modular/SGBase.i
|  
* commit f6fa46ce08438193c356f1555078e55310d1bda3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 16 11:23:37 2009 +0000
| 
|     -- documented something more
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogun/structure/PlifMatrix.h
|  
* commit 554ad00d64728d4071a2d21625153a18cd01a76d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:40:29 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 6a78faa76c96c960eb2c332fac0e3d2576f6d4c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:36:51 2009 +0000
| 
|     remove a couple of global symbols (make them class specific/static)
| 
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
|  
* commit cb8cf75bd8c089901b1300b0f0878e4a50716909
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 08:36:28 2009 +0000
| 
|     fix train function (w/ labels)
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
|  
* commit d9c3431fb835579d90cb422f56e608ea70bae073
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 07:24:19 2009 +0000
| 
|     remove accidentally commited debug code
| 
| M	src/modular/SGBase.i
|  
* commit 51a5e32360bb6452f6eec333d9355bdf5db2c7f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 16 07:22:24 2009 +0000
| 
|     make the classifier classify function pure virtual
| 
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/modular/SGBase.i
|  
* commit 1b61f1f1aa7919c735194e214f7e1ae829504e80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 17:34:05 2009 +0000
| 
|     minor style improvements; add twonorm function
| 
| M	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| M	src/libshogun/classifier/mkl/MKLMultiClass.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit dbab0daa55b5e5f6e80b67e33fe53b238fc7bde2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 15:32:51 2009 +0000
| 
|     update examples
| 
| M	examples/libshogun/Makefile
| D	examples/libshogun/gnmpmkl.cpp
| A	examples/libshogun/mklmulticlass.cpp
| A	examples/matlab_and_octave/mkl_multiclass.m
| M	examples/python_modular/classifier_gmnpsvm.py
|  
* commit 4a95ab22d2f46e1719a49dd7faef646587f953ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 15:32:26 2009 +0000
| 
|     integrate multi class mkl into static and modular interfaces
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/mkl/MKLMultiClass.cpp
| A	src/libshogun/classifier/mkl/MKLMultiClass.h
| D	src/libshogun/classifier/mkl/MKLMulticlass.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| D	src/libshogun/classifier/svm/gmnpmkl.cpp
| D	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
|  
* commit 938fc92f2a88e7cfbb22689598dc16d43c94c82d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:52:04 2009 +0000
| 
|     renamed DA_SVM files
| 
| D	src/libshogun/classifier/svm/DA_SVM.cpp
| D	src/libshogun/classifier/svm/DA_SVM.h
| A	src/libshogun/classifier/svm/DomainAdaptationSVM.cpp
| A	src/libshogun/classifier/svm/DomainAdaptationSVM.h
|  
* commit 28b4b9e3f8eae49c172d660191b1dc4beb41aa41
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:47:10 2009 +0000
| 
|     renaming of class DA_SVM to DomainAdaptationSVM
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 43d96131fbcc7c9f6322922242433d303ac2bd12
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:36:14 2009 +0000
| 
|     DA_SVM fully documented
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 03668fe82a170e6f8a256c80b9293f31689a5a17
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:32:00 2009 +0000
| 
|     -- sorry, forgot to remove some old code
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 67a573e00f1c38a81329fb81c8b5097cc8a6d829
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:31 2009 +0000
| 
|     -- remove file with wrong path from git repo
| 
| D	src/shogun/structure/PlifMatrix.h
|  
* commit 3b608dfacca2b4206e40d17618527b983bdadb30
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:27 2009 +0000
| 
|     -- commented everything on the list you gave me Soeren
| 
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifMatrix.h
| M	src/libshogun/structure/SegmentLoss.h
| A	src/shogun/structure/PlifMatrix.h
|  
* commit 7c01e5aa695625b05f0c297ef807e3e5d9957ff0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 15 13:27:24 2009 +0000
| 
|     apply bugfix
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 5cf929f381a220ccf2a1a817f1ede8a675454bbd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 11:40:46 2009 +0000
| 
|     get r-modular interface back to work (when reference counting is disabled)
| 
| M	README
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| M	examples/r_modular/classifier_gmnpsvm.R
| M	examples/r_modular/classifier_gpbtsvm.R
| M	examples/r_modular/classifier_knn.R
| M	examples/r_modular/classifier_lda.R
| M	examples/r_modular/classifier_liblinear.R
| M	examples/r_modular/classifier_libsvm.R
| M	examples/r_modular/classifier_libsvmmulticlass.R
| M	examples/r_modular/classifier_libsvmoneclass.R
| M	examples/r_modular/classifier_mpdsvm.R
| M	examples/r_modular/classifier_perceptron.R
| M	examples/r_modular/classifier_subgradientsvm.R
| M	examples/r_modular/classifier_svmlight.R
| M	examples/r_modular/classifier_svmlin.R
| M	examples/r_modular/classifier_svmocas.R
| M	examples/r_modular/classifier_svmsgd.R
| M	examples/r_modular/distribution_histogram.R
| M	examples/r_modular/distribution_hmm.R
| M	examples/r_modular/distribution_linearhmm.R
| M	examples/r_modular/kernel_combined.R
| M	examples/r_modular/kernel_commulongstring.R
| M	examples/r_modular/kernel_commwordstring.R
| M	examples/r_modular/kernel_fixeddegreestring.R
| M	examples/r_modular/kernel_histogramword.R
| M	examples/r_modular/kernel_linearstring.R
| M	examples/r_modular/kernel_localalignmentstring.R
| M	examples/r_modular/kernel_localityimprovedstring.R
| M	examples/r_modular/kernel_oligostring.R
| M	examples/r_modular/kernel_polymatchstring.R
| M	examples/r_modular/kernel_simplelocalityimprovedstring.R
| M	examples/r_modular/kernel_topfisher.R
| M	examples/r_modular/kernel_weightedcommwordstring.R
| M	examples/r_modular/kernel_weighteddegreepositionstring.R
| M	examples/r_modular/kernel_weighteddegreestring.R
| M	examples/r_modular/preproc_commulongstring.R
| M	examples/r_modular/preproc_commwordstring.R
| M	src/configure
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/lib/List.h
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/r_modular/swig_typemaps.i
|  
* commit 90f2b59bae8ceed6a3da25e076dd91aec8bf4188
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Oct 15 09:59:01 2009 +0000
| 
|     fixed warnings
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 2fee3f307484cb3d1aafe36e6a8df2931430ca4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 09:09:47 2009 +0000
| 
|     fix typo in mkl doc
| 
| M	src/libshogun/classifier/mkl/MKL.h
|  
* commit a4bfaa4984d835c7821b5013b46f94fcecf0bb6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 09:05:51 2009 +0000
| 
|     document most of the remaining parts
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/VarianceKernelNormalizer.h
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 9a307167688fe253c8ef09d7eaaf9acac66af363
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 15 06:38:44 2009 +0000
| 
|     document mkl properly
| 
| M	src/libshogun/classifier/mkl/MKLClassification.h
| M	src/libshogun/classifier/mkl/MKLOneClass.h
| M	src/libshogun/regression/svr/MKLRegression.h
|  
* commit 415642a353839b3b8b4facec066f6fbfd05291aa
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 17:28:32 2009 +0000
| 
|     unit test working for arbitrary B parameter
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
|  
* commit 460de4b62f624fbb467a17a2a56d2b586ce6f251
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 14 16:40:11 2009 +0000
| 
|     document a bit more and add murmur hash
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Hash.cpp
| M	src/libshogun/lib/Hash.h
| M	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/modular/Library.i
|  
* commit 012b976fc1c2761a4a3f7c7ef0a8b5cae1f70042
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 16:33:30 2009 +0000
| 
|     more elegant formulation of DA_SVM, which should support several stacked SVMs
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 1de1d0ae0a7daafa7024cc77f2f7faf161bef23d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Oct 14 15:18:36 2009 +0000
| 
|     verified version of DA_SVM for one level of classifiers
| 
| M	src/libshogun/classifier/svm/DA_SVM.cpp
| M	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 87e4f071c1028676cb5dce73977d74508981b12c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 18:43:02 2009 +0000
| 
|     show octave api version that is used
| 
| M	src/configure
|  
* commit 798aa4c3939d83dbef4750440d39908178d9af58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 18:41:59 2009 +0000
| 
|     rename result to outputs to resolve conflict in r_modular
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
|  
* commit 491a670788a80aa13c9216313ef377579604291e
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:11:48 2009 +0000
| 
|     made DA_SVM available to bindings
| 
| M	src/modular/Classifier.i
|  
* commit c7abdc6ea5ca7d28aabd3d846c44cf359109050a
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:10:00 2009 +0000
| 
|     typo
| 
| M	src/libshogun/features/Features.h
|  
* commit d2d8a76ad747d142fb32e62742b3eb57380003dd
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:07:58 2009 +0000
| 
|     commented out duplicated serialization code, will have to be ironed out later
| 
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 1e505ec8ca6022891c9b67f360c5fc680a1c5112
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:07:10 2009 +0000
| 
|     added enum for DA_SVM
| 
| M	src/libshogun/classifier/Classifier.h
|  
* commit 65b7529d6e1824e0c9b9ec543f70a226157abac5
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:06:01 2009 +0000
| 
|     removed SVM_model from serialization code
| 
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit 5239d15aee025f9fc5fb8c207f7bdc25d2becf45
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Mon Oct 12 16:05:04 2009 +0000
| 
|     added SVMLight based implementation of Domain Adaptive SVM
| 
| A	src/libshogun/classifier/svm/DA_SVM.cpp
| A	src/libshogun/classifier/svm/DA_SVM.h
|  
* commit 1c88b058f7a9f1c93e7028fdcdc57a443092f4a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 15:00:07 2009 +0000
| 
|     fix get_support_vectors
| 
| M	src/libshogun/classifier/KernelMachine.h
|  
* commit 0e76ec56fe75806ccf54f8727632f7041c03a19c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 15:00:00 2009 +0000
| 
|     fix get_support_vectors
| 
| M	examples/python_modular/classifier_libsvm.py
| A	examples/python_modular/classifier_svmlight_linear_term.py
|  
* commit 763895d9d0f37f8a02e10d73b011b244cf813f74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 14:21:18 2009 +0000
| 
|     move ifdef up
| 
| M	src/libshogun/lib/memory.h
|  
* commit 18f8c3138deb1fe7cec6800d8c57742a138cb607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 13:43:18 2009 +0000
| 
|     compile fixes for cplex based methods
| 
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 2ac77358486d1d1075e746962d86d702fa59dd65
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 12 13:29:48 2009 +0000
| 
|     - fix permission error in init_shogun octave modular
|     - fix crasher in wdsvmocas
| 
| M	src/Makefile.template
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
|  
* commit 5aa2a7bd8766a1f7598c152b97b8514f2ce19124
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 17:18:21 2009 +0000
| 
|     fix compilation alpha variable naming clash
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit bb4e71797aace8893cb46b6a3253dcf029aebfd0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 16:37:10 2009 +0000
| 
|     move model and classify functionality from SVM to KernelMachine
| 
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
|  
* commit 6267132096877699f4c73cd0bd5c5b43e6d8f461
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 11:05:32 2009 +0000
| 
|     seems like parameter-overloading functions must be defined in the uppermost class to be visible for swig. define for KRR accordingly.
| 
| M	examples/python_modular/regression_krr.py
| M	examples/python_modular/regression_libsvr.py
| M	src/libshogun/regression/KRR.h
| M	src/modular/Classifier.i
|  
* commit df22e24135d31b0e2568fa4bf7e9229abd077f90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 10:17:20 2009 +0000
| 
|     transition classifiers/regressors/clustering methods to work with training data passed on method->train(data);
| 
| M	examples/octave_modular/classifier_knn.m
| M	examples/python_modular/classifier_knn.py
| M	examples/python_modular/regression_krr.py
| M	examples/r_modular/classifier_knn.R
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelMachine.cpp
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/mkl/MKL.cpp
| M	src/libshogun/classifier/mkl/MKL.h
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.cpp
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
|  
* commit 641bc0ea45e6cabe00991555a009ce745d9d49bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 08:07:35 2009 +0000
| 
|     another forgotten commit
| 
| A	examples/matlab_and_octave/preproc_logplusone.m
| A	examples/matlab_and_octave/preproc_normone.m
| A	examples/matlab_and_octave/preproc_prunevarsubmean.m
| A	examples/matlab_and_octave/preproc_sortulongstring.m
| A	examples/matlab_and_octave/preproc_sortwordstring.m
|  
* commit 882d425e7b1f934a81187db499d798ad03c166fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 6 08:07:08 2009 +0000
| 
|     forgotten commit
| 
| A	examples/octave_modular/kernel_auc.m
| A	examples/octave_modular/kernel_chi2.m
| A	examples/octave_modular/kernel_combined.m
| A	examples/octave_modular/kernel_commulongstring.m
| A	examples/octave_modular/kernel_commwordstring.m
| A	examples/octave_modular/kernel_const.m
| A	examples/octave_modular/kernel_diag.m
| A	examples/octave_modular/kernel_distance.m
| A	examples/octave_modular/kernel_fixeddegreestring.m
| A	examples/octave_modular/kernel_gaussian.m
| A	examples/octave_modular/kernel_gaussianshift.m
| A	examples/octave_modular/kernel_histogram.m
| A	examples/octave_modular/kernel_linear.m
| A	examples/octave_modular/kernel_linearbyte.m
| A	examples/octave_modular/kernel_linearstring.m
| A	examples/octave_modular/kernel_linearword.m
| A	examples/octave_modular/kernel_localalignmentstring.m
| A	examples/octave_modular/kernel_localityimprovedstring.m
| A	examples/octave_modular/kernel_matchwordstring.m
| A	examples/octave_modular/kernel_oligostring.m
| A	examples/octave_modular/kernel_poly.m
| A	examples/octave_modular/kernel_polymatchstring.m
| A	examples/octave_modular/kernel_polymatchwordstring.m
| A	examples/octave_modular/kernel_sigmoid.m
| A	examples/octave_modular/kernel_simplelocalityimprovedstring.m
| A	examples/octave_modular/kernel_sparsegaussian.m
| A	examples/octave_modular/kernel_sparselinear.m
| A	examples/octave_modular/kernel_sparsepoly.m
| A	examples/octave_modular/kernel_top.m
| A	examples/octave_modular/kernel_weightedcommwordstring.m
| A	examples/octave_modular/kernel_weighteddegreepositionstring.m
| A	examples/octave_modular/kernel_weighteddegreestring.m
| A	examples/octave_modular/preproc_commulongstring.m
| A	examples/octave_modular/preproc_commwordstring.m
| A	examples/octave_modular/preproc_logplusone.m
| A	examples/octave_modular/preproc_normone.m
| A	examples/octave_modular/preproc_prunevarsubmean.m
|  
* commit 7e1f0a25690a8e4fd3afc73273aa87b46a269b08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 15:59:01 2009 +0000
| 
|     - move distance/kernelmachine into classifier
|     - add classify function for classifiers
| 
| M	src/cmdline/CmdLineInterface.cpp
| M	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/DistanceMachine.cpp
| A	src/libshogun/classifier/DistanceMachine.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| A	src/libshogun/classifier/KernelMachine.cpp
| A	src/libshogun/classifier/KernelMachine.h
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LinearClassifier.cpp
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.h
| D	src/libshogun/distance/DistanceMachine.cpp
| D	src/libshogun/distance/DistanceMachine.h
| D	src/libshogun/kernel/KernelMachine.cpp
| D	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Regression.i
|  
* commit 215c37e3f39c17999d371a9d56cea8ab2df633b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 13:22:37 2009 +0000
| 
|     fix errors in examples
| 
| M	examples/matlab_and_octave/classifier_perceptron.m
| M	examples/octave_modular/classifier_perceptron.m
| M	examples/r/classifier_libsvmoneclass.R
|  
* commit a6cb38ed94ecb05a2c426ce7f2dae3e10aa67709
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 13:07:27 2009 +0000
| 
|     fix comment
| 
| M	src/libshogun/regression/KRR.h
|  
* commit 4c0fc902ad91a0d9951613de26cd315eb912d009
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 5 11:04:41 2009 +0000
| 
|     polish remaining r r_modular examples
| 
| M	examples/r/classifier_gmnpsvm.R
| M	examples/r/classifier_gpbtsvm.R
| M	examples/r/classifier_knn.R
| M	examples/r/classifier_lda.R
| M	examples/r/classifier_libsvm.R
| M	examples/r/classifier_libsvmmulticlass.R
| M	examples/r/classifier_libsvmoneclass.R
| M	examples/r/classifier_mpdsvm.R
| M	examples/r/classifier_perceptron.R
| M	examples/r/classifier_svmlight.R
| M	examples/r/clustering_hierarchical.R
| M	examples/r/clustering_kmeans.R
| M	examples/r/distance_braycurtis.R
| M	examples/r/distance_canberra.R
| M	examples/r/distance_canberraword.R
| M	examples/r/distance_chebyshew.R
| M	examples/r/distance_chisquare.R
| M	examples/r/distance_cosine.R
| M	examples/r/distance_euclidian.R
| M	examples/r/distance_geodesic.R
| M	examples/r/distance_hammingword.R
| M	examples/r/distance_jensen.R
| M	examples/r/distance_manhatten.R
| M	examples/r/distance_manhattenword.R
| M	examples/r/distance_minkowski.R
| M	examples/r/distance_tanimoto.R
| M	examples/r/distribution_histogram.R
| M	examples/r/distribution_hmm.R
| M	examples/r/distribution_linearhmm.R
| M	examples/r/kernel_chi2.R
| M	examples/r/kernel_combined.R
| M	examples/r/kernel_commulongstring.R
| M	examples/r/kernel_commwordstring.R
| M	examples/r/kernel_const.R
| M	examples/r/kernel_diag.R
| M	examples/r/kernel_distancetokernel.R
| M	examples/r/kernel_fixeddegreestring.R
| M	examples/r/kernel_gaussian.R
| M	examples/r/kernel_gaussianshift.R
| M	examples/r/kernel_histogram.R
| M	examples/r/kernel_linear.R
| M	examples/r/kernel_linearstring.R
| M	examples/r/kernel_localalignmentstring.R
| M	examples/r/kernel_localityimprovedstring.R
| M	examples/r/kernel_oligostring.R
| M	examples/r/kernel_poly.R
| M	examples/r/kernel_polymatchstring.R
| M	examples/r/kernel_sigmoid.R
| M	examples/r/kernel_simplelocalityimprovedstring.R
| M	examples/r/kernel_weightedcommwordstring.R
| M	examples/r/kernel_weighteddegreepositionstring.R
| M	examples/r/kernel_weighteddegreestring.R
| M	examples/r/preproc_logplusone.R
| M	examples/r/preproc_normone.R
| M	examples/r/preproc_prunevarsubmean.R
| M	examples/r/preproc_sortulongstring.R
| M	examples/r/preproc_sortwordstring.R
| M	examples/r/regression_krr.R
| M	examples/r/regression_libsvr.R
| M	examples/r/regression_svrlight.R
| M	examples/r_modular/classifier_gmnpsvm.R
| M	examples/r_modular/classifier_gpbtsvm.R
| M	examples/r_modular/classifier_knn.R
| M	examples/r_modular/classifier_lda.R
| M	examples/r_modular/classifier_liblinear.R
| M	examples/r_modular/classifier_libsvm.R
| M	examples/r_modular/classifier_libsvmmulticlass.R
| M	examples/r_modular/classifier_libsvmoneclass.R
| M	examples/r_modular/classifier_mpdsvm.R
| M	examples/r_modular/classifier_perceptron.R
| M	examples/r_modular/classifier_subgradientsvm.R
| M	examples/r_modular/classifier_svmlight.R
| M	examples/r_modular/classifier_svmlin.R
| M	examples/r_modular/classifier_svmocas.R
| M	examples/r_modular/classifier_svmsgd.R
| M	examples/r_modular/distribution_histogram.R
| M	examples/r_modular/distribution_hmm.R
| M	examples/r_modular/distribution_linearhmm.R
| M	examples/r_modular/kernel_auc.R
| M	examples/r_modular/kernel_chi2.R
| M	examples/r_modular/kernel_combined.R
| M	examples/r_modular/kernel_commulongstring.R
| M	examples/r_modular/kernel_commwordstring.R
| M	examples/r_modular/kernel_const.R
| M	examples/r_modular/kernel_custom.R
| M	examples/r_modular/kernel_diag.R
| M	examples/r_modular/kernel_distancetokernel.R
| M	examples/r_modular/kernel_fixeddegreestring.R
| M	examples/r_modular/kernel_gaussian.R
| M	examples/r_modular/kernel_gaussianshift.R
| M	examples/r_modular/kernel_histogramword.R
| M	examples/r_modular/kernel_linear.R
| M	examples/r_modular/kernel_linearbyte.R
| M	examples/r_modular/kernel_linearstring.R
| M	examples/r_modular/kernel_linearword.R
| M	examples/r_modular/kernel_localalignmentstring.R
| M	examples/r_modular/kernel_localityimprovedstring.R
| M	examples/r_modular/kernel_oligostring.R
| M	examples/r_modular/kernel_poly.R
| M	examples/r_modular/kernel_polymatchstring.R
| M	examples/r_modular/kernel_polymatchword.R
| M	examples/r_modular/kernel_sigmoid.R
| M	examples/r_modular/kernel_simplelocalityimprovedstring.R
| M	examples/r_modular/kernel_sparsegaussian.R
| M	examples/r_modular/kernel_sparselinear.R
| M	examples/r_modular/kernel_sparsepoly.R
| M	examples/r_modular/kernel_topfisher.R
| M	examples/r_modular/kernel_weightedcommwordstring.R
| M	examples/r_modular/kernel_weighteddegreepositionstring.R
| M	examples/r_modular/kernel_weighteddegreestring.R
| M	examples/r_modular/kernel_wordmatch.R
| M	examples/r_modular/preproc_commulongstring.R
| M	examples/r_modular/preproc_commwordstring.R
| M	examples/r_modular/preproc_logplusone.R
| M	examples/r_modular/preproc_normone.R
| M	examples/r_modular/preproc_prunevarsubmean.R
|  
* commit c44539cc571e43304d1b101e9f03cb8408928745
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 17:26:41 2009 +0000
| 
|     update NEWS and use a more sane value for C
| 
| M	examples/matlab_and_octave/classifier_subgradientsvm.m
| M	examples/python_modular/classifier_liblinear.py
| M	examples/python_modular/classifier_subgradientsvm.py
| M	examples/python_modular/classifier_svmlin.py
| M	examples/python_modular/classifier_svmocas.py
| M	examples/python_modular/classifier_svmsgd.py
| M	examples/python_modular/regression_krr.py
| M	src/NEWS
|  
* commit 2966d4bc8fb54908204548c2e2cbcc18c888fd0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 17:24:40 2009 +0000
| 
|     polish octave modular examples
| 
| M	examples/octave_modular/classifier_gmnpsvm.m
| M	examples/octave_modular/classifier_gpbtsvm.m
| M	examples/octave_modular/classifier_knn.m
| M	examples/octave_modular/classifier_lda.m
| M	examples/octave_modular/classifier_liblinear.m
| M	examples/octave_modular/classifier_libsvm.m
| M	examples/octave_modular/classifier_libsvmmulticlass.m
| M	examples/octave_modular/classifier_libsvmoneclass.m
| M	examples/octave_modular/classifier_mpdsvm.m
| M	examples/octave_modular/classifier_perceptron.m
| M	examples/octave_modular/classifier_subgradientsvm.m
| M	examples/octave_modular/classifier_svmlight.m
| M	examples/octave_modular/classifier_svmlin.m
| M	examples/octave_modular/classifier_svmocas.m
| M	examples/octave_modular/classifier_svmsgd.m
| M	examples/octave_modular/clustering_kmeans.m
| M	examples/octave_modular/distance_braycurtis.m
| M	examples/octave_modular/distance_canberra.m
| M	examples/octave_modular/distance_canberraword.m
| M	examples/octave_modular/distance_chebyshew.m
| M	examples/octave_modular/distance_chisquare.m
| M	examples/octave_modular/distance_cosine.m
| M	examples/octave_modular/distance_euclidian.m
| M	examples/octave_modular/distance_geodesic.m
| M	examples/octave_modular/distance_hammingword.m
| M	examples/octave_modular/distance_jensen.m
| M	examples/octave_modular/distance_manhatten.m
| M	examples/octave_modular/distance_manhattenword.m
| M	examples/octave_modular/distance_minkowski.m
| M	examples/octave_modular/distance_sparseeuclidian.m
| M	examples/octave_modular/distance_tanimoto.m
| M	examples/octave_modular/distribution_histogram.m
| M	examples/octave_modular/distribution_hmm.m
| M	examples/octave_modular/regression_krr.m
|  
* commit d09b1054a2a97d5f110007f371773e694d275c4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:54:35 2009 +0000
| 
|     use larger C in example
| 
| M	examples/cmdline/classifier_gpbtsvm.sg
| M	examples/cmdline/classifier_knn.sg
| M	examples/cmdline/classifier_subgradientsvm.sg
| M	examples/octave_modular/classifier_gmnpsvm.m
| M	examples/octave_modular/classifier_gpbtsvm.m
| M	examples/octave_modular/classifier_libsvm.m
| M	examples/octave_modular/classifier_libsvmmulticlass.m
| M	examples/octave_modular/classifier_libsvmoneclass.m
| M	examples/octave_modular/classifier_mpdsvm.m
| M	examples/octave_modular/classifier_svmlight.m
| M	examples/octave_modular/regression_libsvr.m
| M	examples/octave_modular/regression_svrlight.m
| M	examples/python/classifier_gmnpsvm.py
| M	examples/python/classifier_gpbtsvm.py
| M	examples/python/classifier_libsvm.py
| M	examples/python/classifier_mpdsvm.py
| M	examples/python/classifier_svmlight.py
| M	examples/python/regression_krr.py
| M	examples/python/regression_libsvr.py
| M	examples/python/regression_svrlight.py
| M	examples/python_modular/classifier_svmlight.py
|  
* commit 393b192a0a9ec3f364452316e8c5da2b85165191
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:54:01 2009 +0000
| 
|     polish matlab/octave examples
| 
| M	examples/matlab_and_octave/classifier_gmnpsvm.m
| M	examples/matlab_and_octave/classifier_gpbtsvm.m
| M	examples/matlab_and_octave/classifier_knn.m
| M	examples/matlab_and_octave/classifier_lda.m
| M	examples/matlab_and_octave/classifier_liblinear.m
| M	examples/matlab_and_octave/classifier_libsvm.m
| M	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| M	examples/matlab_and_octave/classifier_libsvmoneclass.m
| M	examples/matlab_and_octave/classifier_mpdsvm.m
| M	examples/matlab_and_octave/classifier_perceptron.m
| M	examples/matlab_and_octave/classifier_subgradientsvm.m
| M	examples/matlab_and_octave/classifier_svmlight.m
| M	examples/matlab_and_octave/classifier_svmlin.m
| M	examples/matlab_and_octave/classifier_svmocas.m
| M	examples/matlab_and_octave/classifier_svmsgd.m
| M	examples/matlab_and_octave/classifier_svmsgd_objective.m
| M	examples/matlab_and_octave/clustering_kmeans.m
| M	examples/matlab_and_octave/distance_braycurtis.m
| M	examples/matlab_and_octave/distance_canberra.m
| M	examples/matlab_and_octave/distance_canberraword.m
| M	examples/matlab_and_octave/distance_chebyshew.m
| M	examples/matlab_and_octave/distance_chisquare.m
| M	examples/matlab_and_octave/distance_cosine.m
| M	examples/matlab_and_octave/distance_euclidian.m
| M	examples/matlab_and_octave/distance_geodesic.m
| M	examples/matlab_and_octave/distance_hammingword.m
| M	examples/matlab_and_octave/distance_jensen.m
| M	examples/matlab_and_octave/distance_manhatten.m
| M	examples/matlab_and_octave/distance_manhattenword.m
| M	examples/matlab_and_octave/distance_minkowski.m
| M	examples/matlab_and_octave/distance_tanimoto.m
| M	examples/matlab_and_octave/distribution_hmm.m
| M	examples/matlab_and_octave/distribution_linearhmm.m
| M	examples/matlab_and_octave/features_dot_polynomial.m
| M	examples/matlab_and_octave/kernels_chi2.m
| M	examples/matlab_and_octave/kernels_combined.m
| M	examples/matlab_and_octave/kernels_commulongstring.m
| M	examples/matlab_and_octave/kernels_commwordstring.m
| M	examples/matlab_and_octave/kernels_const.m
| M	examples/matlab_and_octave/kernels_diag.m
| M	examples/matlab_and_octave/kernels_distance.m
| M	examples/matlab_and_octave/kernels_fixeddegreestring.m
| M	examples/matlab_and_octave/kernels_gaussian.m
| M	examples/matlab_and_octave/kernels_gaussianshift.m
| M	examples/matlab_and_octave/kernels_histogramword.m
| M	examples/matlab_and_octave/kernels_linear.m
| M	examples/matlab_and_octave/kernels_linearbyte.m
| M	examples/matlab_and_octave/kernels_linearstring.m
| M	examples/matlab_and_octave/kernels_linearword.m
| M	examples/matlab_and_octave/kernels_localalignmentstring.m
| M	examples/matlab_and_octave/kernels_localityimprovedstring.m
| M	examples/matlab_and_octave/kernels_oligostring.m
| M	examples/matlab_and_octave/kernels_poly.m
| M	examples/matlab_and_octave/kernels_polymatchstring.m
| M	examples/matlab_and_octave/kernels_polymatchword.m
| M	examples/matlab_and_octave/kernels_sigmoid.m
| M	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| M	examples/matlab_and_octave/kernels_sparsegaussian.m
| M	examples/matlab_and_octave/kernels_sparselinear.m
| M	examples/matlab_and_octave/kernels_sparsepoly.m
| M	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| M	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| M	examples/matlab_and_octave/kernels_weighteddegreestring.m
| M	examples/matlab_and_octave/regression_krr.m
| M	examples/matlab_and_octave/regression_libsvr.m
| M	examples/matlab_and_octave/regression_svrlight.m
|  
* commit e241a70f7fea3bd48d233cef60e312841b317c3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:35:36 2009 +0000
| 
|     remove unused mindy define
| 
| M	src/libshogun/features/Features.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
|  
* commit 7206b842b825a270bec0f0f831a7187526582251
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:24:40 2009 +0000
| 
|     remove further mindy cruft
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/modular/Features.i
|  
* commit 6a52607d62437693d201b2106726b2680d41f30c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 16:06:13 2009 +0000
| 
|     remove mindy support
| 
| M	src/configure
| D	src/libshogun/features/MindyGramFeatures.cpp
| D	src/libshogun/features/MindyGramFeatures.h
| D	src/libshogun/kernel/MindyGramKernel.cpp
| D	src/libshogun/kernel/MindyGramKernel.h
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Features.i
| M	src/modular/Kernel.i
|  
* commit 8cc996f2970c1c32ba04e72bad5ec0d9aeaed626
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:17 2009 +0000
| 
|     unused variables removed and documentation added for new functions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit 900b1cbc6cb25261f58a9f05379cfbd10a71776d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:14 2009 +0000
| 
|     -- two important bugfixes: suboptimal paths and invalid write
|        1. for the transition to the sequence_end state long transitions could not be
|           used since the corresponding table entry was computed after the maximization step
|           This resulted in suboptimal path predictions.
|        2. fixed invalid write in case of predictions that used all candidate positons
|           in their prediction path
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit ff4de9584a2225843451a57b2270798e771b6c26
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:11 2009 +0000
| 
|     -- bugfix related to the dynamic programm with long transitions
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/IntronList.cpp
|  
* commit e226e8bd8b0c09f1313dbe932dba8dee6164e478
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Oct 2 16:05:03 2009 +0000
| 
|     some more debug output
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit cc74209b649d21b91a90608f6e46e6bcc918c1f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 15:58:15 2009 +0000
| 
|     remove mindy support
| 
| M	src/configure
|  
* commit b1f06a5f2ea2c0dd9ea1d5d776d1698c0df0905c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 13:39:26 2009 +0000
| 
|     fix minor errors in configure that prevented octave to work on solaris
| 
| M	src/configure
|  
* commit 731d04abb8dec6336f551e37a7f62745bbed1c6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 10:30:15 2009 +0000
| 
|     split up r_modular examples
| 
| D	examples/r_modular/all_kernels.R
| A	examples/r_modular/kernel_auc.R
| A	examples/r_modular/kernel_chi2.R
| A	examples/r_modular/kernel_combined.R
| A	examples/r_modular/kernel_commulongstring.R
| A	examples/r_modular/kernel_commwordstring.R
| A	examples/r_modular/kernel_const.R
| A	examples/r_modular/kernel_custom.R
| A	examples/r_modular/kernel_diag.R
| A	examples/r_modular/kernel_distancetokernel.R
| A	examples/r_modular/kernel_fixeddegreestring.R
| A	examples/r_modular/kernel_gaussian.R
| A	examples/r_modular/kernel_gaussianshift.R
| A	examples/r_modular/kernel_histogramword.R
| A	examples/r_modular/kernel_linear.R
| A	examples/r_modular/kernel_linearbyte.R
| A	examples/r_modular/kernel_linearstring.R
| A	examples/r_modular/kernel_linearword.R
| A	examples/r_modular/kernel_localalignmentstring.R
| A	examples/r_modular/kernel_localityimprovedstring.R
| A	examples/r_modular/kernel_oligostring.R
| A	examples/r_modular/kernel_poly.R
| A	examples/r_modular/kernel_polymatchstring.R
| A	examples/r_modular/kernel_polymatchword.R
| A	examples/r_modular/kernel_sigmoid.R
| A	examples/r_modular/kernel_simplelocalityimprovedstring.R
| A	examples/r_modular/kernel_sparsegaussian.R
| A	examples/r_modular/kernel_sparselinear.R
| A	examples/r_modular/kernel_sparsepoly.R
| A	examples/r_modular/kernel_topfisher.R
| A	examples/r_modular/kernel_weightedcommwordstring.R
| A	examples/r_modular/kernel_weighteddegreepositionstring.R
| A	examples/r_modular/kernel_weighteddegreestring.R
| A	examples/r_modular/kernel_wordmatch.R
|  
* commit 45cc5afb50d6cd3fcac63458f309db8f72523ab7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 09:17:05 2009 +0000
| 
|     split up r_modular examples
| 
| M	examples/octave_modular/kernel_custom.m
| D	examples/r_modular/all_clustering.R
| D	examples/r_modular/all_distance.R
| D	examples/r_modular/all_distribution.R
| D	examples/r_modular/all_preproc.R
| D	examples/r_modular/all_regression.R
| A	examples/r_modular/distribution_histogram.R
| A	examples/r_modular/distribution_hmm.R
| A	examples/r_modular/distribution_linearhmm.R
| A	examples/r_modular/preproc_commulongstring.R
| A	examples/r_modular/preproc_commwordstring.R
| A	examples/r_modular/preproc_logplusone.R
| A	examples/r_modular/preproc_normone.R
| A	examples/r_modular/preproc_prunevarsubmean.R
|  
* commit a9bed2656b8d406857f4779cda99575841329c25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 2 06:33:12 2009 +0000
| 
|     fix accidental error killing cmdline interface i/o
| 
| M	src/cmdline/CmdLineInterface.cpp
|  
* commit 6c050f3a19447992306141b948e4e6c59b974ea7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 1 15:35:06 2009 +0000
| 
|     further example fixes
| 
| M	examples/libshogun/dyn_int.cpp
| M	examples/libshogun/gnmpmkl.cpp
| M	examples/python_modular/check_commwordkernel_memleak.py
| M	examples/r/classifier_gmnpsvm.R
| M	examples/r/classifier_gpbtsvm.R
| M	examples/r/classifier_libsvmmulticlass.R
| M	examples/r/classifier_libsvmoneclass.R
| M	examples/r/classifier_mpdsvm.R
| M	examples/r/kernel_histogram.R
| M	examples/r/preproc_normone.R
| M	examples/r/preproc_prunevarsubmean.R
|  
* commit a125aeea7f0825ccce5ece6a7342e28960f50020
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 1 15:23:39 2009 +0000
| 
|     fix examples
| 
| M	examples/matlab_and_octave/kernels_commulongstring.m
| M	examples/matlab_and_octave/kernels_commwordstring.m
| M	examples/matlab_and_octave/kernels_gaussian.m
| M	examples/matlab_and_octave/kernels_gaussianshift.m
| M	examples/matlab_and_octave/kernels_histogramword.m
| M	examples/matlab_and_octave/kernels_weightedcommwordstring.m
|  
* commit c50c630d31f1067efacdaf32ccf6e9de4e7afc3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 22:25:30 2009 +0000
| 
|     further split up examples
| 
| D	examples/octave_modular/all_classifier.m
| D	examples/octave_modular/all_clustering.m
| D	examples/octave_modular/all_distance.m
| D	examples/octave_modular/all_distribution.m
| D	examples/octave_modular/all_kernels.m
| D	examples/octave_modular/all_preproc.m
| D	examples/octave_modular/all_regression.m
| A	examples/octave_modular/classifier_gmnpsvm.m
| A	examples/octave_modular/classifier_gpbtsvm.m
| A	examples/octave_modular/classifier_knn.m
| A	examples/octave_modular/classifier_lda.m
| A	examples/octave_modular/classifier_liblinear.m
| A	examples/octave_modular/classifier_libsvm.m
| A	examples/octave_modular/classifier_libsvmmulticlass.m
| A	examples/octave_modular/classifier_libsvmoneclass.m
| A	examples/octave_modular/classifier_mpdsvm.m
| A	examples/octave_modular/classifier_perceptron.m
| A	examples/octave_modular/classifier_subgradientsvm.m
| A	examples/octave_modular/classifier_svmlight.m
| A	examples/octave_modular/classifier_svmlin.m
| A	examples/octave_modular/classifier_svmocas.m
| A	examples/octave_modular/classifier_svmsgd.m
| A	examples/octave_modular/clustering_hierarchical.m
| A	examples/octave_modular/clustering_kmeans.m
| D	examples/octave_modular/custom_kernel.m
| A	examples/octave_modular/distance_braycurtis.m
| A	examples/octave_modular/distance_canberra.m
| A	examples/octave_modular/distance_canberraword.m
| A	examples/octave_modular/distance_chebyshew.m
| A	examples/octave_modular/distance_chisquare.m
| A	examples/octave_modular/distance_cosine.m
| A	examples/octave_modular/distance_euclidian.m
| A	examples/octave_modular/distance_geodesic.m
| A	examples/octave_modular/distance_hammingword.m
| A	examples/octave_modular/distance_jensen.m
| A	examples/octave_modular/distance_manhatten.m
| A	examples/octave_modular/distance_manhattenword.m
| A	examples/octave_modular/distance_minkowski.m
| A	examples/octave_modular/distance_sparseeuclidian.m
| A	examples/octave_modular/distance_tanimoto.m
| A	examples/octave_modular/distribution_histogram.m
| A	examples/octave_modular/distribution_hmm.m
| A	examples/octave_modular/distribution_linearhmm.m
| A	examples/octave_modular/kernel_custom.m
| A	examples/octave_modular/regression_krr.m
| A	examples/octave_modular/regression_libsvr.m
| A	examples/octave_modular/regression_svrlight.m
| D	examples/r/all_classifier.R
| D	examples/r/all_clustering.R
| D	examples/r/all_distance.R
| D	examples/r/all_distribution.R
| D	examples/r/all_kernels.R
| D	examples/r/all_preproc.R
| D	examples/r/all_regression.R
| A	examples/r/classifier_gmnpsvm.R
| A	examples/r/classifier_gpbtsvm.R
| A	examples/r/classifier_knn.R
| A	examples/r/classifier_lda.R
| A	examples/r/classifier_libsvm.R
| A	examples/r/classifier_libsvmmulticlass.R
| A	examples/r/classifier_libsvmoneclass.R
| A	examples/r/classifier_mpdsvm.R
| A	examples/r/classifier_perceptron.R
| A	examples/r/classifier_svmlight.R
| A	examples/r/clustering_hierarchical.R
| A	examples/r/clustering_kmeans.R
| A	examples/r/distance_braycurtis.R
| A	examples/r/distance_canberra.R
| A	examples/r/distance_canberraword.R
| A	examples/r/distance_chebyshew.R
| A	examples/r/distance_chisquare.R
| A	examples/r/distance_cosine.R
| A	examples/r/distance_euclidian.R
| A	examples/r/distance_geodesic.R
| A	examples/r/distance_hammingword.R
| A	examples/r/distance_jensen.R
| A	examples/r/distance_manhatten.R
| A	examples/r/distance_manhattenword.R
| A	examples/r/distance_minkowski.R
| A	examples/r/distance_tanimoto.R
| A	examples/r/distribution_histogram.R
| A	examples/r/distribution_hmm.R
| A	examples/r/distribution_linearhmm.R
| A	examples/r/kernel_chi2.R
| A	examples/r/kernel_combined.R
| A	examples/r/kernel_commulongstring.R
| A	examples/r/kernel_commwordstring.R
| A	examples/r/kernel_const.R
| A	examples/r/kernel_diag.R
| A	examples/r/kernel_distancetokernel.R
| A	examples/r/kernel_fixeddegreestring.R
| A	examples/r/kernel_gaussian.R
| A	examples/r/kernel_gaussianshift.R
| A	examples/r/kernel_histogram.R
| A	examples/r/kernel_linear.R
| A	examples/r/kernel_linearstring.R
| A	examples/r/kernel_localalignmentstring.R
| A	examples/r/kernel_localityimprovedstring.R
| A	examples/r/kernel_oligostring.R
| A	examples/r/kernel_poly.R
| A	examples/r/kernel_polymatchstring.R
| A	examples/r/kernel_sigmoid.R
| A	examples/r/kernel_simplelocalityimprovedstring.R
| A	examples/r/kernel_string.R
| A	examples/r/kernel_weightedcommwordstring.R
| A	examples/r/kernel_weighteddegreepositionstring.R
| A	examples/r/kernel_weighteddegreestring.R
| A	examples/r/mkl_wd.R
| A	examples/r/preproc_logplusone.R
| A	examples/r/preproc_normone.R
| A	examples/r/preproc_prunevarsubmean.R
| A	examples/r/preproc_sortulongstring.R
| A	examples/r/preproc_sortwordstring.R
| A	examples/r/regression_krr.R
| A	examples/r/regression_libsvr.R
| A	examples/r/regression_svrlight.R
| D	examples/r/string_kernel.R
| D	examples/r/wd_mkl.R
| D	examples/r_modular/all_classifier.R
| A	examples/r_modular/classifier_gmnpsvm.R
| A	examples/r_modular/classifier_gpbtsvm.R
| A	examples/r_modular/classifier_knn.R
| A	examples/r_modular/classifier_lda.R
| A	examples/r_modular/classifier_liblinear.R
| A	examples/r_modular/classifier_libsvm.R
| A	examples/r_modular/classifier_libsvmmulticlass.R
| A	examples/r_modular/classifier_libsvmoneclass.R
| A	examples/r_modular/classifier_mpdsvm.R
| A	examples/r_modular/classifier_perceptron.R
| A	examples/r_modular/classifier_subgradientsvm.R
| A	examples/r_modular/classifier_svmlight.R
| A	examples/r_modular/classifier_svmlin.R
| A	examples/r_modular/classifier_svmocas.R
| A	examples/r_modular/classifier_svmsgd.R
|  
* commit 900ebe74fca39a42026d067cceb22fadb2b40e9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 16:31:05 2009 +0000
| 
|     fix error in octave detection script
| 
| M	src/configure
|  
* commit f298fa0a18b5e97b03dce665549b9199857b4391
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 16:17:36 2009 +0000
| 
|     get shogun (libshogun,libshgounui,cmdline) to compile under solaris again
| 
| M	src/Makefile
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 51ac7f9e8d32db50127d48f9e206790b93070083
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 08:58:22 2009 +0000
| 
|     splitup matlab/octave examples
| 
| D	examples/matlab_and_octave/all_classifier.m
| D	examples/matlab_and_octave/all_clustering.m
| D	examples/matlab_and_octave/all_distance.m
| D	examples/matlab_and_octave/all_distribution.m
| D	examples/matlab_and_octave/all_kernels.m
| D	examples/matlab_and_octave/all_preproc.m
| D	examples/matlab_and_octave/all_regression.m
| A	examples/matlab_and_octave/classifier_gmnpsvm.m
| A	examples/matlab_and_octave/classifier_gpbtsvm.m
| A	examples/matlab_and_octave/classifier_knn.m
| A	examples/matlab_and_octave/classifier_lda.m
| A	examples/matlab_and_octave/classifier_liblinear.m
| A	examples/matlab_and_octave/classifier_liblinear_objective.m
| A	examples/matlab_and_octave/classifier_libsvm.m
| A	examples/matlab_and_octave/classifier_libsvmmulticlass.m
| A	examples/matlab_and_octave/classifier_libsvmoneclass.m
| A	examples/matlab_and_octave/classifier_lpboost.m
| A	examples/matlab_and_octave/classifier_lpm.m
| A	examples/matlab_and_octave/classifier_mpdsvm.m
| A	examples/matlab_and_octave/classifier_perceptron.m
| A	examples/matlab_and_octave/classifier_subgradientsvm.m
| A	examples/matlab_and_octave/classifier_svmlight.m
| A	examples/matlab_and_octave/classifier_svmlight_wdkernel.m
| A	examples/matlab_and_octave/classifier_svmlight_wds_batch.m
| A	examples/matlab_and_octave/classifier_svmlin.m
| A	examples/matlab_and_octave/classifier_svmocas.m
| A	examples/matlab_and_octave/classifier_svmocas_objective.m
| A	examples/matlab_and_octave/classifier_svmsgd.m
| A	examples/matlab_and_octave/classifier_svmsgd_objective.m
| A	examples/matlab_and_octave/clustering_hierarchical.m
| A	examples/matlab_and_octave/clustering_kmeans.m
| D	examples/matlab_and_octave/custom_kernel.m
| A	examples/matlab_and_octave/distance_braycurtis.m
| A	examples/matlab_and_octave/distance_canberra.m
| A	examples/matlab_and_octave/distance_canberraword.m
| A	examples/matlab_and_octave/distance_chebyshew.m
| A	examples/matlab_and_octave/distance_chisquare.m
| A	examples/matlab_and_octave/distance_cosine.m
| A	examples/matlab_and_octave/distance_euclidian.m
| A	examples/matlab_and_octave/distance_geodesic.m
| A	examples/matlab_and_octave/distance_hammingword.m
| A	examples/matlab_and_octave/distance_jensen.m
| A	examples/matlab_and_octave/distance_manhatten.m
| A	examples/matlab_and_octave/distance_manhattenword.m
| A	examples/matlab_and_octave/distance_minkowski.m
| A	examples/matlab_and_octave/distance_tanimoto.m
| A	examples/matlab_and_octave/distribution_histogram.m
| A	examples/matlab_and_octave/distribution_hmm.m
| A	examples/matlab_and_octave/distribution_linearhmm.m
| A	examples/matlab_and_octave/distribution_markovchain.m
| A	examples/matlab_and_octave/features_dot_polynomial.m
| A	examples/matlab_and_octave/features_dot_wdfeatures.m
| A	examples/matlab_and_octave/features_dot_weightedspec.m
| A	examples/matlab_and_octave/features_string.m
| A	examples/matlab_and_octave/kernels_chi2.m
| A	examples/matlab_and_octave/kernels_combined.m
| A	examples/matlab_and_octave/kernels_commulongstring.m
| A	examples/matlab_and_octave/kernels_commwordstring.m
| A	examples/matlab_and_octave/kernels_const.m
| A	examples/matlab_and_octave/kernels_custom.m
| A	examples/matlab_and_octave/kernels_diag.m
| A	examples/matlab_and_octave/kernels_distance.m
| A	examples/matlab_and_octave/kernels_fixeddegreestring.m
| A	examples/matlab_and_octave/kernels_gaussian.m
| A	examples/matlab_and_octave/kernels_gaussianshift.m
| A	examples/matlab_and_octave/kernels_histogramword.m
| A	examples/matlab_and_octave/kernels_lik.m
| A	examples/matlab_and_octave/kernels_linear.m
| A	examples/matlab_and_octave/kernels_linearbyte.m
| A	examples/matlab_and_octave/kernels_linearstring.m
| A	examples/matlab_and_octave/kernels_linearword.m
| A	examples/matlab_and_octave/kernels_localalignmentstring.m
| A	examples/matlab_and_octave/kernels_localityimprovedstring.m
| A	examples/matlab_and_octave/kernels_oligostring.m
| A	examples/matlab_and_octave/kernels_poly.m
| A	examples/matlab_and_octave/kernels_polymatchstring.m
| A	examples/matlab_and_octave/kernels_polymatchword.m
| A	examples/matlab_and_octave/kernels_sigmoid.m
| A	examples/matlab_and_octave/kernels_simplelocalityimprovedstring.m
| A	examples/matlab_and_octave/kernels_sparsegaussian.m
| A	examples/matlab_and_octave/kernels_sparselinear.m
| A	examples/matlab_and_octave/kernels_sparsepoly.m
| A	examples/matlab_and_octave/kernels_spectrum.m
| A	examples/matlab_and_octave/kernels_weighted_spec.m
| A	examples/matlab_and_octave/kernels_weightedcommwordstring.m
| A	examples/matlab_and_octave/kernels_weighteddegreepositionstring.m
| A	examples/matlab_and_octave/kernels_weighteddegreestring.m
| D	examples/matlab_and_octave/liblinear.m
| D	examples/matlab_and_octave/lik_kernel.m
| D	examples/matlab_and_octave/lpboost.m
| D	examples/matlab_and_octave/lpm.m
| D	examples/matlab_and_octave/markov_chain.m
| D	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| A	examples/matlab_and_octave/regression_krr.m
| A	examples/matlab_and_octave/regression_libsvr.m
| A	examples/matlab_and_octave/regression_svrlight.m
| D	examples/matlab_and_octave/spec_kernel.m
| D	examples/matlab_and_octave/string_features.m
| D	examples/matlab_and_octave/svmocas.m
| D	examples/matlab_and_octave/svmsgd.m
| D	examples/matlab_and_octave/wd_and_dot_features.m
| D	examples/matlab_and_octave/wd_kernel.m
| D	examples/matlab_and_octave/wds_kernel.m
| D	examples/matlab_and_octave/weighted_spec.m
| D	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit d8c95bb2c04350cb441c212713e718ff3dcdc739
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 30 06:24:39 2009 +0000
| 
|     get tests running again
| 
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	testsuite/cmdline/test.sg
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
| M	testsuite/r/classifier.R
| M	testsuite/r/distance.R
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| M	testsuite/r/regression.R
| M	testsuite/r/util/set_distance.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 436fc760da9f8977fec442e9bf43aa27bbc7e253
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 29 16:53:47 2009 +0000
| 
|     fix examples for new interface / make KRR and custom kernel work again
| 
| M	examples/cmdline/distance_braycurtis.sg
| M	examples/cmdline/distance_canberra.sg
| M	examples/cmdline/distance_canberraword.sg
| M	examples/cmdline/distance_chebyshew.sg
| M	examples/cmdline/distance_chisquare.sg
| M	examples/cmdline/distance_cosine.sg
| M	examples/cmdline/distance_euclidean.sg
| M	examples/cmdline/distance_geodesic.sg
| M	examples/cmdline/distance_hammingword.sg
| M	examples/cmdline/distance_jensen.sg
| M	examples/cmdline/distance_manhatten.sg
| M	examples/cmdline/distance_manhattenword.sg
| M	examples/cmdline/distance_minkowski.sg
| M	examples/cmdline/distance_tanimoto.sg
| M	examples/matlab_and_octave/all_distance.m
| M	examples/matlab_and_octave/custom_kernel.m
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	examples/python/classifier_knn.py
| M	examples/python/distance_braycurtis.py
| M	examples/python/distance_canberra.py
| M	examples/python/distance_canberraword.py
| M	examples/python/distance_chebyshew.py
| M	examples/python/distance_chisquare.py
| M	examples/python/distance_cosine.py
| M	examples/python/distance_euclidian.py
| M	examples/python/distance_geodesic.py
| M	examples/python/distance_hammingword.py
| M	examples/python/distance_jensen.py
| M	examples/python/distance_manhatten.py
| M	examples/python/distance_manhattenword.py
| M	examples/python/distance_minkowski.py
| M	examples/python/distance_tanimoto.py
| M	examples/python/kernel_combined.py
| M	examples/python/kernel_distancetokernel.py
| M	examples/python_modular/classifier_svmlight.py
| M	examples/python_modular/classifier_svmlight_batch_linadd.py
| M	examples/python_modular/serialization_svmlight.py
| M	examples/r/all_distance.R
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 174c7b201377972647d26f65f7c210d72cbe3122
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 26 12:48:27 2009 +0000
| 
|     split up python examples
| 
| A	examples/python/preproc_logplusone.py
| A	examples/python/preproc_normone.py
| A	examples/python/preproc_prunevarsubmean.py
| A	examples/python/preproc_sortulongstring.py
| A	examples/python/preproc_sortwordstring.py
| A	examples/python/regression_krr.py
| A	examples/python/regression_libsvr.py
| A	examples/python/regression_svrlight.py
|  
* commit 63f519062a281608cf167746f0845e0a67ebf2d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 26 11:58:18 2009 +0000
| 
|     get rid of the init_kernel commands and call get_kernel_matrix with additional TRAIN/TEST argument
| 
| M	examples/cmdline/classifier_gmnpsvm.sg
| M	examples/cmdline/classifier_gpbtsvm.sg
| M	examples/cmdline/classifier_knn.sg
| M	examples/cmdline/classifier_libsvm.sg
| M	examples/cmdline/classifier_libsvmmulticlass.sg
| M	examples/cmdline/classifier_libsvmoneclass.sg
| M	examples/cmdline/classifier_mpd.sg
| M	examples/cmdline/classifier_svmlight.sg
| M	examples/cmdline/clustering_hierarchical.sg
| M	examples/cmdline/clustering_kmeans.sg
| M	examples/cmdline/distance_braycurtis.sg
| M	examples/cmdline/distance_canberra.sg
| M	examples/cmdline/distance_canberraword.sg
| M	examples/cmdline/distance_chebyshew.sg
| M	examples/cmdline/distance_chisquare.sg
| M	examples/cmdline/distance_cosine.sg
| M	examples/cmdline/distance_euclidean.sg
| M	examples/cmdline/distance_geodesic.sg
| M	examples/cmdline/distance_hammingword.sg
| M	examples/cmdline/distance_jensen.sg
| M	examples/cmdline/distance_manhatten.sg
| M	examples/cmdline/distance_manhattenword.sg
| M	examples/cmdline/distance_minkowski.sg
| M	examples/cmdline/distance_tanimoto.sg
| M	examples/cmdline/kernel_chi2.sg
| M	examples/cmdline/kernel_combined.sg
| M	examples/cmdline/kernel_commulongstring.sg
| M	examples/cmdline/kernel_commwordstring.sg
| M	examples/cmdline/kernel_const.sg
| M	examples/cmdline/kernel_diag.sg
| M	examples/cmdline/kernel_distancetokernel.sg
| M	examples/cmdline/kernel_fixeddegreestring.sg
| M	examples/cmdline/kernel_gaussian.sg
| M	examples/cmdline/kernel_gaussianshift.sg
| M	examples/cmdline/kernel_linear.sg
| M	examples/cmdline/kernel_linearbyte.sg
| M	examples/cmdline/kernel_linearstring.sg
| M	examples/cmdline/kernel_linearword.sg
| M	examples/cmdline/kernel_localalignmentstring.sg
| M	examples/cmdline/kernel_localityimprovedstring.sg
| M	examples/cmdline/kernel_oligostring.sg
| M	examples/cmdline/kernel_poly.sg
| M	examples/cmdline/kernel_polymatchstring.sg
| M	examples/cmdline/kernel_polymatchword.sg
| M	examples/cmdline/kernel_sigmoid.sg
| M	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| M	examples/cmdline/kernel_sparse_linear.sg
| M	examples/cmdline/kernel_sparsegaussian.sg
| M	examples/cmdline/kernel_sparsepoly.sg
| M	examples/cmdline/kernel_top.sg
| M	examples/cmdline/kernel_weightedcommwordstring.sg
| M	examples/cmdline/kernel_weighteddegreepositionstring.sg
| M	examples/cmdline/kernel_weighteddegreestring.sg
| M	examples/cmdline/libsvm.sg
| M	examples/cmdline/preproc_logplusone.sg
| M	examples/cmdline/preproc_normone.sg
| M	examples/cmdline/preproc_prunevarsubmean.sg
| M	examples/cmdline/preproc_sortulongstring.sg
| M	examples/cmdline/preproc_sortwordstring.sg
| M	examples/cmdline/regression_krr.sg
| M	examples/cmdline/regression_libsvr.sg
| M	examples/cmdline/regression_svrlight.sg
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/all_clustering.m
| M	examples/matlab_and_octave/all_distance.m
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
| M	examples/matlab_and_octave/all_regression.m
| M	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| M	examples/matlab_and_octave/graphical/cluster_kmeans.m
| M	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/svm_classification.m
| M	examples/matlab_and_octave/graphical/svm_multiclass.m
| M	examples/matlab_and_octave/graphical/svr_regression.m
| M	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_regression.m
| M	examples/matlab_and_octave/graphical/test_regression_mkl.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/tests/test_classifier.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_combined2.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_knn.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| M	examples/matlab_and_octave/tests/test_ocas_normalization.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_regression_linadd.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_sparse_methods.m
| M	examples/matlab_and_octave/tests/test_spec_consensus.m
| M	examples/matlab_and_octave/tests/test_subgradsvm.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| M	examples/matlab_and_octave/tests/test_tppk.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	examples/matlab_and_octave/weighted_spec_features.m
| M	examples/python/classifier_gmnpsvm.py
| M	examples/python/classifier_gpbtsvm.py
| M	examples/python/classifier_knn.py
| M	examples/python/classifier_libsvmmulticlass.py
| M	examples/python/classifier_libsvmoneclass.py
| M	examples/python/classifier_mpdsvm.py
| M	examples/python/classifier_svmlight.py
| M	examples/python/clustering_hierarchical.py
| M	examples/python/clustering_kmeans.py
| M	examples/python/distance_braycurtis.py
| M	examples/python/distance_canberra.py
| M	examples/python/distance_canberraword.py
| M	examples/python/distance_chebyshew.py
| M	examples/python/distance_chisquare.py
| M	examples/python/distance_cosine.py
| M	examples/python/distance_euclidian.py
| M	examples/python/distance_geodesic.py
| M	examples/python/distance_hammingword.py
| M	examples/python/distance_jensen.py
| M	examples/python/distance_manhatten.py
| M	examples/python/distance_manhattenword.py
| M	examples/python/distance_minkowski.py
| M	examples/python/distance_tanimoto.py
| M	examples/python/graphical/svm_classification.py
| M	examples/python/graphical/svr_regression.py
| M	examples/python/kernel_chi2.py
| M	examples/python/kernel_combined.py
| M	examples/python/kernel_commulongstring.py
| M	examples/python/kernel_commwordstring.py
| M	examples/python/kernel_const.py
| M	examples/python/kernel_diag.py
| M	examples/python/kernel_distancetokernel.py
| M	examples/python/kernel_fixeddegreestring.py
| M	examples/python/kernel_gaussian.py
| M	examples/python/kernel_gaussianshift.py
| M	examples/python/kernel_linear.py
| M	examples/python/kernel_linear_string.py
| M	examples/python/kernel_linearbyte.py
| M	examples/python/kernel_linearword.py
| M	examples/python/kernel_localalignmentstring.py
| M	examples/python/kernel_localityimprovedstring.py
| M	examples/python/kernel_oligostring.py
| M	examples/python/kernel_pluginestimatehistogram.py
| M	examples/python/kernel_poly.py
| M	examples/python/kernel_polymatchstring.py
| M	examples/python/kernel_polymatchword.py
| M	examples/python/kernel_salzbergstring.py
| M	examples/python/kernel_sigmoid.py
| M	examples/python/kernel_simplelocalityimprovedstring.py
| M	examples/python/kernel_weightedcommwordstring.py
| M	examples/python/kernel_weighteddegreepositionstring.py
| M	examples/python/kernel_weighteddegreestring.py
| M	examples/python/test_mkl.py
| M	examples/r/all_classifier.R
| M	examples/r/all_clustering.R
| M	examples/r/all_distance.R
| M	examples/r/all_kernels.R
| M	examples/r/all_preproc.R
| M	examples/r/all_regression.R
| M	examples/r/graphical/svm_classification.R
| M	examples/r/graphical/svr_regression.R
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	examples/r/wd_mkl.R
|  
* commit f833266c93ee87f014a00bac22443aad09e08ae6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 25 12:47:16 2009 +0000
| 
|     - when training kernel/distance machines it is no longer necessary to call sg('init_kernel', 'TRAIN') or 'TEST'. this is now done internally.
|     - sg('get_kernel_matrix') now has an extra argument, i.e. sg('get_kernel_matrix', 'TRAIN')
|     - remove the unused {load,save}_{kernel,distance}_init functions in Kernels and Distances
|     - move the mkl Code into libshogun/classifier/mkl
|     - integrate the new structure code into python
|     - add a macro to display a deprecated message ( SG_DEPRECATED )
| 
| M	examples/python/classifier_libsvm.py
| M	examples/python/kernel_chi2.py
| M	src/NEWS
| A	src/libshogun/classifier/mkl/MKL.cpp
| A	src/libshogun/classifier/mkl/MKL.h
| A	src/libshogun/classifier/mkl/MKLClassification.cpp
| A	src/libshogun/classifier/mkl/MKLClassification.h
| A	src/libshogun/classifier/mkl/MKLMulticlass.h
| A	src/libshogun/classifier/mkl/MKLOneClass.cpp
| A	src/libshogun/classifier/mkl/MKLOneClass.h
| D	src/libshogun/classifier/svm/MKL.cpp
| D	src/libshogun/classifier/svm/MKL.h
| D	src/libshogun/classifier/svm/MKLClassification.cpp
| D	src/libshogun/classifier/svm/MKLClassification.h
| D	src/libshogun/classifier/svm/MKLMulticlass.h
| D	src/libshogun/classifier/svm/MKLOneClass.cpp
| D	src/libshogun/classifier/svm/MKLOneClass.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MindyGramKernel.cpp
| M	src/libshogun/kernel/MindyGramKernel.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogun/structure/IntronList.h
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
| M	src/modular/Structure.i
|  
* commit ef730d71a63b58e3671d0f14d16a06a9e074fab0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 24 05:52:49 2009 +0000
| 
|     target news :)
| 
| M	src/NEWS
|  
* commit ded74dc80d00f836b037fe5a9de1726f915d1d34
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 18:31:26 2009 +0000
| 
|     example for serialization
| 
| A	examples/python_modular/serialization_svmlight.py
| A	src/libshogun/features/StringFeatures.cpp
|  
* commit d4ef791f80975b4d38b99b839faa6919501946c3
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 18:29:23 2009 +0000
| 
|     awesome. Serialization merged successfully (at least for some classes).
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/RealFileFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
|  
* commit 3afe2b797fca452991ac469b3071072b716c3006
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Wed Sep 23 16:13:54 2009 +0000
| 
|     Initial version of serialization support for Alphabet and StringFeatures
| 
| M	src/.generate_link_dependencies.py
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/StringFeatures.h
| M	src/modular/SGBase.i
|  
* commit c78fcf6762352f163abf28e47b24378882d3d042
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 23 13:27:41 2009 +0000
| 
|     add option to set linear term in svm light
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/modular/Classifier.i
|  
* commit 3796a1c3191ba6ff749a73e6b9a778eef2a57b62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 22 14:34:17 2009 +0000
| 
|     fix a number of integer range overflows in perf measures
| 
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
|  
* commit 6efe6243571c2a75e9ad1e9cd94c707afd3c06f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 22 10:33:35 2009 +0000
| 
|     fix bug in configure ignoring --cxx and --cc options
| 
| M	src/configure
|  
* commit 638c940c583ae52e63cc3f6c5b3ad244ce0b7afb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 17:01:39 2009 +0000
| 
|     fixes for testing rule
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
|  
* commit c36f5024d5b77760b4acb1dbaa0c2bff66d81b5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:25:38 2009 +0000
| 
|     space between ! and darwin
| 
| M	src/configure
|  
* commit 114a659dd19244333a747f04cb19404b38c60ce6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:13:21 2009 +0000
| 
|     update NEWS/README
| 
| M	README
| M	src/NEWS
|  
* commit 91f355d11b8a0dd44c493f18b29021ba11de6699
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 13:11:02 2009 +0000
| 
|     split up python examples
| 
| D	examples/python/all_classifier.py
| D	examples/python/all_clustering.py
| D	examples/python/all_distance.py
| D	examples/python/all_distribution.py
| D	examples/python/all_kernels.py
| D	examples/python/all_preproc.py
| D	examples/python/all_regression.py
| A	examples/python/classifier_gmnpsvm.py
| A	examples/python/classifier_gpbtsvm.py
| A	examples/python/classifier_knn.py
| A	examples/python/classifier_lda.py
| A	examples/python/classifier_libsvm.py
| A	examples/python/classifier_libsvmmulticlass.py
| A	examples/python/classifier_libsvmoneclass.py
| A	examples/python/classifier_mpdsvm.py
| A	examples/python/classifier_perceptron.py
| A	examples/python/classifier_svmlight.py
| A	examples/python/clustering_hierarchical.py
| A	examples/python/clustering_kmeans.py
| A	examples/python/distance_braycurtis.py
| A	examples/python/distance_canberra.py
| A	examples/python/distance_canberraword.py
| A	examples/python/distance_chebyshew.py
| A	examples/python/distance_chisquare.py
| A	examples/python/distance_cosine.py
| A	examples/python/distance_euclidian.py
| A	examples/python/distance_geodesic.py
| A	examples/python/distance_hammingword.py
| A	examples/python/distance_jensen.py
| A	examples/python/distance_manhatten.py
| A	examples/python/distance_manhattenword.py
| A	examples/python/distance_minkowski.py
| A	examples/python/distance_tanimoto.py
| A	examples/python/distribution_histogram.py
| A	examples/python/distribution_hmm.py
| A	examples/python/distribution_linearhmm.py
| A	examples/python/kernel_chi2.py
| A	examples/python/kernel_combined.py
| A	examples/python/kernel_commulongstring.py
| A	examples/python/kernel_commwordstring.py
| A	examples/python/kernel_const.py
| A	examples/python/kernel_diag.py
| A	examples/python/kernel_distancetokernel.py
| A	examples/python/kernel_fixeddegreestring.py
| A	examples/python/kernel_gaussian.py
| A	examples/python/kernel_gaussianshift.py
| A	examples/python/kernel_linear.py
| A	examples/python/kernel_linear_string.py
| A	examples/python/kernel_linearbyte.py
| A	examples/python/kernel_linearword.py
| A	examples/python/kernel_localalignmentstring.py
| A	examples/python/kernel_localityimprovedstring.py
| A	examples/python/kernel_oligostring.py
| A	examples/python/kernel_pluginestimatehistogram.py
| A	examples/python/kernel_poly.py
| A	examples/python/kernel_polymatchstring.py
| A	examples/python/kernel_polymatchword.py
| A	examples/python/kernel_salzbergstring.py
| A	examples/python/kernel_sigmoid.py
| A	examples/python/kernel_simplelocalityimprovedstring.py
| A	examples/python/kernel_weightedcommwordstring.py
| A	examples/python/kernel_weighteddegreepositionstring.py
| A	examples/python/kernel_weighteddegreestring.py
|  
* commit 292c8cd77a14d6e4e393a732fabd5a1fb3a6dea9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 11:54:16 2009 +0000
| 
|     split up examples from all_* into separate files
| 
| D	examples/cmdline/all_classifier.sg
| D	examples/cmdline/all_clustering.sg
| D	examples/cmdline/all_distance.sg
| D	examples/cmdline/all_distribution.sg
| D	examples/cmdline/all_kernels.sg
| D	examples/cmdline/all_preproc.sg
| D	examples/cmdline/all_regression.sg
| A	examples/cmdline/classifier_gmnpsvm.sg
| A	examples/cmdline/classifier_gpbtsvm.sg
| A	examples/cmdline/classifier_knn.sg
| A	examples/cmdline/classifier_lda.sg
| A	examples/cmdline/classifier_liblinear.sg
| A	examples/cmdline/classifier_libsvm.sg
| A	examples/cmdline/classifier_libsvmmulticlass.sg
| A	examples/cmdline/classifier_libsvmoneclass.sg
| A	examples/cmdline/classifier_mpd.sg
| A	examples/cmdline/classifier_perceptron.sg
| A	examples/cmdline/classifier_subgradientsvm.sg
| A	examples/cmdline/classifier_svmlight.sg
| A	examples/cmdline/classifier_svmlin.sg
| A	examples/cmdline/classifier_svmocas.sg
| A	examples/cmdline/classifier_svmsgd.sg
| A	examples/cmdline/clustering_hierarchical.sg
| A	examples/cmdline/clustering_kmeans.sg
| A	examples/cmdline/distance_braycurtis.sg
| A	examples/cmdline/distance_canberra.sg
| A	examples/cmdline/distance_canberraword.sg
| A	examples/cmdline/distance_chebyshew.sg
| A	examples/cmdline/distance_chisquare.sg
| A	examples/cmdline/distance_cosine.sg
| A	examples/cmdline/distance_euclidean.sg
| A	examples/cmdline/distance_geodesic.sg
| A	examples/cmdline/distance_hammingword.sg
| A	examples/cmdline/distance_jensen.sg
| A	examples/cmdline/distance_manhatten.sg
| A	examples/cmdline/distance_manhattenword.sg
| A	examples/cmdline/distance_minkowski.sg
| A	examples/cmdline/distance_tanimoto.sg
| A	examples/cmdline/distribution_histogram.sg
| A	examples/cmdline/distribution_hmm.sg
| A	examples/cmdline/distribution_linearhmm.sg
| A	examples/cmdline/kernel_chi2.sg
| A	examples/cmdline/kernel_combined.sg
| A	examples/cmdline/kernel_commulongstring.sg
| A	examples/cmdline/kernel_commwordstring.sg
| A	examples/cmdline/kernel_const.sg
| A	examples/cmdline/kernel_diag.sg
| A	examples/cmdline/kernel_distancetokernel.sg
| A	examples/cmdline/kernel_fixeddegreestring.sg
| A	examples/cmdline/kernel_gaussian.sg
| A	examples/cmdline/kernel_gaussianshift.sg
| A	examples/cmdline/kernel_linear.sg
| A	examples/cmdline/kernel_linearbyte.sg
| A	examples/cmdline/kernel_linearstring.sg
| A	examples/cmdline/kernel_linearword.sg
| A	examples/cmdline/kernel_localalignmentstring.sg
| A	examples/cmdline/kernel_localityimprovedstring.sg
| A	examples/cmdline/kernel_oligostring.sg
| A	examples/cmdline/kernel_poly.sg
| A	examples/cmdline/kernel_polymatchstring.sg
| A	examples/cmdline/kernel_polymatchword.sg
| A	examples/cmdline/kernel_sigmoid.sg
| A	examples/cmdline/kernel_simplelocalityimprovedstring.sg
| A	examples/cmdline/kernel_sparse_linear.sg
| A	examples/cmdline/kernel_sparsegaussian.sg
| A	examples/cmdline/kernel_sparsepoly.sg
| A	examples/cmdline/kernel_top.sg
| A	examples/cmdline/kernel_weightedcommwordstring.sg
| A	examples/cmdline/kernel_weighteddegreepositionstring.sg
| A	examples/cmdline/kernel_weighteddegreestring.sg
| A	examples/cmdline/preproc_logplusone.sg
| A	examples/cmdline/preproc_normone.sg
| A	examples/cmdline/preproc_prunevarsubmean.sg
| A	examples/cmdline/preproc_sortulongstring.sg
| A	examples/cmdline/preproc_sortwordstring.sg
| A	examples/cmdline/regression_krr.sg
| A	examples/cmdline/regression_libsvr.sg
| A	examples/cmdline/regression_svrlight.sg
|  
* commit 621a6542449ae5011f75b1ccad6da34ddc0d5858
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 21 10:26:59 2009 +0000
| 
|     implement new testing rule for mcsvm (using bias)
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/MCSVM.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 19c45540c0b4b76a53bf614d7b7a36ffd4458607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 20 18:11:40 2009 +0000
| 
|     don't use wordsize = 64bit on darwin/leopard
| 
| M	src/configure
|  
* commit 8df40f5308a6abc53a05535b42e9dba8da9ffd61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 20:42:21 2009 +0000
| 
|     enable bias computation in mcsvm prepare other libsvm based svms for disabling bias
| 
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/regression/svr/LibSVR.cpp
|  
* commit ee0716c045a7e470d2dfb41c97412407905c3876
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 16:57:36 2009 +0000
| 
|     implement correct bias and objective computation for mcsvm
| 
| M	src/NEWS
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit aa5da1aa23c8f8f071574da30b37d0c84740d3dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 17 15:25:04 2009 +0000
| 
|     remove debug code
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 5093cf7b986b5a19b388708b9e013c58c5cf59d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 15 16:06:42 2009 +0000
| 
|     add further progress output
| 
| M	src/libshogun/classifier/svm/MCSVM.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit 2b1f7adb153323c408dee9f2b698efb463b16c3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 15 13:05:15 2009 +0000
| 
|     remove obsolete calculations of Gmaxn*
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit a884cb0aa0cd37730cc476b839a00299bea301f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 13 04:58:49 2009 +0000
| 
|     revert include path fix / it was correct
| 
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 84a4f05d56ac6d449cdbdb0ea2b98322eb2665dc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Sep 10 14:34:59 2009 +0000
| 
|     * bug fix in dp related to long transitions and loss
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 5332fa76d0ea1506a2801ae1fc8985be90df8792
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:52 2009 +0000
| 
|     enable long transitions for auxiliary data in feature generation function
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 447a1f689a49a1e8cf94865a4288b611f3e90f81
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:48 2009 +0000
| 
|     Revert "changed type of linear features from float64 to float32  to save mem"
|     
|     This reverts commit 81a6816cda389a2e52ac5f0f9fee7ce820980b94.
|     
|     Conflicts:
|     
|     	trunk/src/libshogun/structure/DynProg.cpp
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d7da188b0bf81746f916027c064d2d264c6b1c82
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 8 06:50:44 2009 +0000
| 
|     fix invalid write
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit fc4517acccd1a18ab3a7abd2432de586bd1cdcf7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Sat Sep 5 16:10:26 2009 +0000
| 
|     changed type of lineat features from float64 to float32  to save mem
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit a6d582b202a78c1662f9e6ea5c49b38f1f055be1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Sep 4 07:23:47 2009 +0000
| 
|     -- new sg interface function for settings related to the long transition approximation
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 5d1d696117e398a5b2f310d17d71d7e6f6c91262
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Sep 3 20:40:12 2009 +0000
| 
|     * solved the segment loss additivity problem
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit 3da1ec245e73a33002d2774fbe366e32efce45a6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:53:06 2009 +0000
| 
|     * fixed bug in debug code
|     * still non-additivity issues in loss
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
|  
* commit e28d829cb060546e44b2b40598330c59cdd36544
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:41:11 2009 +0000
| 
|     seems to work now
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit b2c7a74443e2a3f89a9d5d9afd6e7118608c8b90
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 13:13:52 2009 +0000
| 
|     * long introns should work without loss
|     * still some additivity issues with the segment loss
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit b92a8444673932350ff29d017cd86362544771ca
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Sep 2 12:35:56 2009 +0000
| 
|     -- segment loss is now additive, at least for my small example
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 802a8d8f975d31e0ef380d11709213b4feaab0b0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Sep 2 10:28:20 2009 +0000
| 
|     pre cleanup
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 0226bd46389e56bdb5e1846f2da4b29b63472b74
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Sep 1 22:36:57 2009 +0000
| 
|     * version with long introns. Tested for a few cases without loss
|     * still inconsistent when using loss
|     
|     * fixed some minor issues in BitString.h (a while ago)
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 2924a7722bd28162fe4374f42bd61276ef0e83ef
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:58:03 2009 +0000
| 
|     -- segment loss seems to be OK now
|        the prediction for my example was the same, but
|        the loss is slightly different (110 vs. 108)
|        only one example tested
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
|  
* commit 65e0060e97c154ea999990d4f2eb6ec3bd38dfce
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:59 2009 +0000
| 
|     -- some more debug code
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3cbb4c168c91a77e0e76bd0bfeb59336756fbb1a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:56 2009 +0000
| 
|     -- new loss calculation leads to similar but not equal results
|        still some bugs left
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 14027855057c2753a6957df3be19652d277dc0f9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:52 2009 +0000
| 
|     -- main functionality is there
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/SegmentLoss.cpp
| M	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 736fb9b94575ac744d03612f8d43b35bc48e7359
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Sep 1 17:57:47 2009 +0000
| 
|     -- precompute segment loss and move code for that to a new class
| 
| M	src/libshogun/structure/DynProg.cpp
| A	src/libshogun/structure/SegmentLoss.cpp
| A	src/libshogun/structure/SegmentLoss.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit df49d253e6e5d5e5c4cdc9f977c0f6703ce2532b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 28 11:43:07 2009 +0000
| 
|     revert path changes. they are indeed correct
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
|  
* commit 686bb38fdadc08da38716724f2e4888d9bfb1cad
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 28 10:25:59 2009 +0000
| 
|     adapted paths of header files
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
|  
* commit ce86723ad738076987e25636c642a43babf737cd
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 13:25:05 2009 +0000
| 
|     -- the dot feature for the polynomial kernel can now be normalized
| 
| M	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	src/libshogun/features/PolyFeatures.cpp
| M	src/libshogun/features/PolyFeatures.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 31b6bb540b902c3047266e964aea8d6cfc9c7cf8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 25 10:53:51 2009 +0000
| 
|     impl. get_features for other dot_features
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 730eaf54c57a094fcbba85024f3c203e8b9a8b0d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:45 2009 +0000
| 
|     -- implemented dot feature for polynomial kernel
| 
| A	examples/matlab_and_octave/polynomial_kernel_dot_features.m
| M	src/libshogun/features/Features.h
| A	src/libshogun/features/PolyFeatures.cpp
| A	src/libshogun/features/PolyFeatures.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/modular/Features.i
|  
* commit ca03e98ceedc28e43e069d60752c8e03b94462d7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:42 2009 +0000
| 
|     -- some needless code removed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 80e88db8fda13145ea7a9b8055890992af7696cf
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Aug 25 09:57:38 2009 +0000
| 
|     -- several mem leaks fixed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit d0445800bc10bfe0ea42a4d9d7352d66c8b8953f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 24 14:10:21 2009 +0000
| 
|     further sunos magic
| 
| M	src/configure
| M	src/libshogun/lib/Mathematics.h
|  
* commit 3a73ba0921f395961352e1c54d08a75d2ec2997f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 23 21:44:42 2009 +0000
| 
|     split up python modular examples
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
| D	examples/python_modular/all_classifier.py
| D	examples/python_modular/all_distance.py
| D	examples/python_modular/all_preproc.py
| D	examples/python_modular/all_regression.py
| A	examples/python_modular/classifier_gmnpsvm.py
| A	examples/python_modular/classifier_gpbtsvm.py
| A	examples/python_modular/classifier_knn.py
| A	examples/python_modular/classifier_lda.py
| A	examples/python_modular/classifier_liblinear.py
| A	examples/python_modular/classifier_libsvm.py
| A	examples/python_modular/classifier_libsvmmulticlass.py
| A	examples/python_modular/classifier_libsvmoneclass.py
| A	examples/python_modular/classifier_mpdsvm.py
| A	examples/python_modular/classifier_perceptron.py
| A	examples/python_modular/classifier_subgradientsvm.py
| A	examples/python_modular/classifier_svmlight.py
| A	examples/python_modular/classifier_svmlight_batch_linadd.py
| A	examples/python_modular/classifier_svmlin.py
| A	examples/python_modular/classifier_svmocas.py
| A	examples/python_modular/classifier_svmsgd.py
| A	examples/python_modular/distance_braycurtis.py
| A	examples/python_modular/distance_canberra.py
| A	examples/python_modular/distance_canberraword.py
| A	examples/python_modular/distance_chebyshew.py
| A	examples/python_modular/distance_chisquare.py
| A	examples/python_modular/distance_cosine.py
| A	examples/python_modular/distance_euclidian.py
| A	examples/python_modular/distance_geodesic.py
| A	examples/python_modular/distance_hammingword.py
| A	examples/python_modular/distance_jensen.py
| A	examples/python_modular/distance_manhatten.py
| A	examples/python_modular/distance_manhattenword.py
| A	examples/python_modular/distance_minkowski.py
| A	examples/python_modular/distance_normsquared.py
| A	examples/python_modular/distance_sparseeuclidean.py
| A	examples/python_modular/distance_tanimoto.py
| M	examples/python_modular/graphical/svmlin.py
| A	examples/python_modular/preproc_logplusone.py
| A	examples/python_modular/preproc_normone.py
| A	examples/python_modular/preproc_prunevarsubmean.py
| A	examples/python_modular/preproc_sortulongstring.py
| A	examples/python_modular/preproc_sortwordstring.py
| A	examples/python_modular/regression_krr.py
| A	examples/python_modular/regression_libsvr.py
| A	examples/python_modular/regression_svrlight.py
| M	src/configure
|  
* commit c0b499788d204c2f1a4ca7a9481da52bb764131e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 12:08:40 2009 +0000
| 
|     a few sunos fixes.
| 
| M	src/configure
| M	src/libshogun/lib/common.h
|  
* commit de383fa3c7216954537d9ad4e8bd163220f0696e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 11:23:56 2009 +0000
| 
|     fix for get_classifier
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit cbf4717935880159101c4144ed9444c900331d24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 19 10:05:56 2009 +0000
| 
|     potentiallyfix one class mkl
| 
| M	src/NEWS
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3c1bb4fc25dac98f2bf65c0b305d705ccf9287a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:26:35 2009 +0000
| 
|     add example on how to use set_linear_classifier
| 
| M	examples/matlab_and_octave/svmocas.m
|  
* commit a24022d83891c264ceacb23b805a4357dafadb1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:18:31 2009 +0000
| 
|     add missing include
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 03132119e10dfe9a688f340288a0ed30e1606395
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:13:22 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 51aac9d4ecab27eff4a741267c55795717798c46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 18 12:07:58 2009 +0000
| 
|     implement set_linear_classifier
| 
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit be25b85e3739b079b5be892ee4d14ca10d0e40cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:49:34 2009 +0000
| 
|     Preparing for new Release shogun_0.8.0
| 
| M	doc/Doxyfile
|  
* commit cf66e8ffc071d19aafae287466376162a48be999
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:33:41 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b0c7594cb304e6bb1f512875d5c9e5cbc9c05a3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:25:15 2009 +0000
| 
|     another compile fix
| 
| M	src/libshogun/regression/svr/MKLRegression.cpp
|  
* commit fc2d217c4b9120a6c551e7f45cf3968324824b44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:22:41 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticRInterface.mainpage
|  
* commit a3ccdfe30cd9ca4feaa8edca2c48143b7c7c62db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:22:08 2009 +0000
| 
|     fix compile error w/o svmlight
| 
| M	src/libshogun/classifier/svm/MKLClassification.cpp
|  
* commit 008ea8bb2fa32b3fceb23703968f3468f594b985
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:09:37 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 4e8a15cbf67369949a41e80501f6e77682c0f08c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:08:48 2009 +0000
| 
|     don't set precision - doesn't matter for now
| 
| M	examples/octave_modular/libsvm.m
| M	examples/python_modular/libsvm.py
|  
* commit 5dcc97636dfd51ed08c388c64728d50afd4f4d0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:04:02 2009 +0000
| 
|     update news to release date
| 
| M	src/NEWS
|  
* commit b61fddc9df50f9f836a7d5eb341e1978e53623cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 08:02:27 2009 +0000
| 
|     create equivalent python modular example
| 
| M	examples/python_modular/libsvm.py
|  
* commit 18933a3d11e83b72d261f5db55da201c4bc55703
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 16 07:51:59 2009 +0000
| 
|     finish tutorial
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	examples/cmdline/libsvm.sg
| M	examples/python_modular/graphical/svm.py
| A	examples/python_modular/libsvm.py
|  
* commit 0915141211d4c62cdb96f16a53b988596a1915cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 16:41:24 2009 +0000
| 
|     - on darwin use ${_prefix} in library path
|     - fix MKL modular inclusion
|     - fix examples for new syntax and a related regression for WD/SPEC features
| 
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/r/all_classifier.R
| M	examples/r/all_kernels.R
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	src/configure
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Regression.i
| M	src/r/RInterface.cpp
|  
* commit 0944d6f4852cf7e245312957bbf61b43187e7bac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 15:20:46 2009 +0000
| 
|     enable new MKL for python modular
| 
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit bd12b3ed595c3e286f292f39a66c780ce248e101
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 14:59:46 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
|  
* commit 92aaaf9044ec5752c7bb070352a7975159f9cf24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 14:46:09 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 81b452322425a500d6acbd2789f01bf0ae88e19f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 15 07:33:09 2009 +0000
| 
|     remove legacy examples and update documentation/examples
| 
| M	README
| M	doc/pages/Installation.mainpage
| M	doc/pages/Methods.mainpage
| M	doc/pages/Tutorial.mainpage
| M	examples/cmdline/all_classifier.sg
| M	examples/cmdline/libsvm.sg
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/svm_classification.m
| M	examples/matlab_and_octave/graphical/svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/legacy/all_classifier.m
| D	examples/matlab_and_octave/legacy/all_clustering.m
| D	examples/matlab_and_octave/legacy/all_distance.m
| D	examples/matlab_and_octave/legacy/all_distribution.m
| D	examples/matlab_and_octave/legacy/all_kernels.m
| D	examples/matlab_and_octave/legacy/all_preproc.m
| D	examples/matlab_and_octave/legacy/all_regression.m
| D	examples/matlab_and_octave/legacy/graphical/cluster_hierarchical.m
| D	examples/matlab_and_octave/legacy/graphical/cluster_kmeans.m
| D	examples/matlab_and_octave/legacy/graphical/entropy.m
| D	examples/matlab_and_octave/legacy/graphical/hmm.m
| D	examples/matlab_and_octave/legacy/graphical/lda_classification.m
| D	examples/matlab_and_octave/legacy/graphical/local_alignment_kernel.m
| D	examples/matlab_and_octave/legacy/graphical/mkl_pseudo_dna.m
| D	examples/matlab_and_octave/legacy/graphical/spec_interp.m
| D	examples/matlab_and_octave/legacy/graphical/svm_classification.m
| D	examples/matlab_and_octave/legacy/graphical/svm_multiclass.m
| D	examples/matlab_and_octave/legacy/graphical/svr_regression.m
| D	examples/matlab_and_octave/legacy/graphical/test_gnpp_svm.m
| D	examples/matlab_and_octave/legacy/graphical/test_poim_wds.m
| D	examples/matlab_and_octave/legacy/graphical/test_regression.m
| D	examples/matlab_and_octave/legacy/graphical/test_regression_mkl.m
| D	examples/matlab_and_octave/legacy/graphical/test_spec_interp.m
| D	examples/matlab_and_octave/legacy/graphical/test_svm_multiclass.m
| D	examples/matlab_and_octave/legacy/graphical/test_wd_wds_parallel.m
| D	examples/matlab_and_octave/legacy/graphical/wds_consensus.m
| D	examples/matlab_and_octave/legacy/graphical/wds_shift_interp.m
| D	examples/matlab_and_octave/legacy/liblinear.m
| D	examples/matlab_and_octave/legacy/lik_kernel.m
| D	examples/matlab_and_octave/legacy/lpboost.m
| D	examples/matlab_and_octave/legacy/lpm.m
| D	examples/matlab_and_octave/legacy/markov_chain.m
| D	examples/matlab_and_octave/legacy/mkl_classify_christmas_star.m
| D	examples/matlab_and_octave/legacy/mkl_regression_3sine_waves.m
| D	examples/matlab_and_octave/legacy/mkl_regression_sine.m
| D	examples/matlab_and_octave/legacy/spec_kernel.m
| D	examples/matlab_and_octave/legacy/string_features.m
| D	examples/matlab_and_octave/legacy/stringfeatures.m
| D	examples/matlab_and_octave/legacy/svmocas.m
| D	examples/matlab_and_octave/legacy/svmsgd.m
| D	examples/matlab_and_octave/legacy/tests/test_classifier.m
| D	examples/matlab_and_octave/legacy/tests/test_combined.m
| D	examples/matlab_and_octave/legacy/tests/test_combined2.m
| D	examples/matlab_and_octave/legacy/tests/test_complex_scenario.m
| D	examples/matlab_and_octave/legacy/tests/test_custom_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_interface.m
| D	examples/matlab_and_octave/legacy/tests/test_kernel_optimization.m
| D	examples/matlab_and_octave/legacy/tests/test_knn.m
| D	examples/matlab_and_octave/legacy/tests/test_l2svm.m
| D	examples/matlab_and_octave/legacy/tests/test_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_linear_methods.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl_svr.m
| D	examples/matlab_and_octave/legacy/tests/test_mkl_svr_wrapper.m
| D	examples/matlab_and_octave/legacy/tests/test_ocas_normalization.m
| D	examples/matlab_and_octave/legacy/tests/test_one_class_svm.m
| D	examples/matlab_and_octave/legacy/tests/test_regression_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_sliding_window.m
| D	examples/matlab_and_octave/legacy/tests/test_sparse.m
| D	examples/matlab_and_octave/legacy/tests/test_sparse_methods.m
| D	examples/matlab_and_octave/legacy/tests/test_spec_consensus.m
| D	examples/matlab_and_octave/legacy/tests/test_subgradsvm.m
| D	examples/matlab_and_octave/legacy/tests/test_svmlight_libsvm.m
| D	examples/matlab_and_octave/legacy/tests/test_svrlight_libsvr.m
| D	examples/matlab_and_octave/legacy/tests/test_wd_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_wd_linadd.m
| D	examples/matlab_and_octave/legacy/tests/test_wdocas.m
| D	examples/matlab_and_octave/legacy/tests/test_wds_consensus.m
| D	examples/matlab_and_octave/legacy/tests/test_wds_kernel.m
| D	examples/matlab_and_octave/legacy/tests/test_wdshift_position_weights.m
| D	examples/matlab_and_octave/legacy/tests/test_weighted_spectrum.m
| D	examples/matlab_and_octave/legacy/wd_kernel.m
| D	examples/matlab_and_octave/legacy/wds_kernel.m
| D	examples/matlab_and_octave/legacy/weighted_spec.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_combined2.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_ocas_normalization.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_spec_consensus.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/python/all_classifier.py
| M	examples/python/graphical/svm_classification.py
| M	examples/python/test_mkl.py
| M	examples/r/all_classifier.R
| M	examples/r/graphical/svm_classification.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	src/NEWS
|  
* commit 4588688e98294caa7b7adb1503530b8b6a966d40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 14 15:32:27 2009 +0000
| 
|     function to set word in bitstring
| 
| M	src/libshogun/lib/BitString.h
|  
* commit 66b26862d9a3b7e0865fa5d7d645923b6ab48ffe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 14 08:01:23 2009 +0000
| 
|     fix another memory leak occurring only with interleaved MKL
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/kernel/CombinedKernel.h
|  
* commit 109aa470b0b9027dc235af4de9a1ccfed5320977
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 13 19:25:08 2009 +0000
| 
|     add BINARY alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
|  
* commit 2c9bc06c85de1782e3077dfd8f027e17d54324fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 13 19:01:17 2009 +0000
| 
|     fix another minor memory leak occurring with mkl
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit ae583fea151082bbf38b66be6c59811820e70874
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 11 19:26:15 2009 +0000
| 
|     fix further leaks related to multiple kernels and mkl
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
|  
* commit bc64e1483014a1efe8948f7a3433fe9191cbc262
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 11 19:13:11 2009 +0000
| 
|     fix a memory leak occurring with svm light linadd and multiple kernels
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/lib/List.h
|  
* commit 44c74df76ca4dd334edbc13bf3aba676815c6e44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 10 15:34:37 2009 +0000
| 
|     be really strict on two-class labeling test, throw an error if label +1 or -1 or not found or labels!=+/-1 are found
| 
| M	src/libshogun/features/Labels.cpp
|  
* commit 3c014834c61b5e4a7d615189298fa29d58250c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 18:48:57 2009 +0000
| 
|     memory tracing still does not work with octave...
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit 132bfc30585d76e846f05dc0169827cf52ed573e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 15:39:23 2009 +0000
| 
|     memory tracing finally works ( sg('whos') ), it requires the new/delete etc operators to be defined/implemented in the matlab.cpp/octave.cpp otherwise the standard operators (std:new,...) are used
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/lib/Set.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
|  
* commit d581cf50ebc8755bfb78cc1fe50dbad0dde6ffd9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 13:11:24 2009 +0000
| 
|     add memory alloc tracing (configure --enable-trace-memory-allocs) and add new command "who" in static interfaces to list shogun alloc'd objects and their sizes. note that current implementation is very inefficient - only use for debugging purposes.
| 
| M	src/configure
| M	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/Set.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit be65a2faf9c70edab85a71ce8ff0267f9a559406
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 07:24:37 2009 +0000
| 
|     new loglevel ALL/ GCDEBUG (to debug memory leaks)
| 
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit d7566f5040eea2a087ea2fb95e81130fb5eab17a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 2 06:22:44 2009 +0000
| 
|     add several cancel_computation() checks
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVMSGD.cpp
| M	src/libshogun/classifier/svm/Tron.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
|  
* commit 2b48ba29498325d4e91cd96e9cb9185c12c876cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 18:50:45 2009 +0000
| 
|     several fixes in RMK
| 
| M	src/NEWS
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| M	src/libshogun/kernel/RegulatoryModulesStringKernel.h
|  
* commit bfa33c8eb077143fb6869afcc2d70c6197005deb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 14:42:10 2009 +0000
| 
|     fix potential memory leak in MKL
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit e2eb341afb1317774a464104f7ab8900f1b909fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 31 13:23:28 2009 +0000
| 
|     fix a bug in binary search and add a read_next function to binary stream
| 
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit bb7b8c73697f05effec89b3f588fe4a6ff319af6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 30 12:19:19 2009 +0000
| 
|     initial rmk import
| 
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/RegulatoryModulesStringKernel.cpp
| A	src/libshogun/kernel/RegulatoryModulesStringKernel.h
| M	src/modular/Kernel.i
|  
* commit ff5f21344f1209e11bbbf03c272fd48377d14997
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 29 12:55:11 2009 +0000
| 
|     add open/close functions and default constructor
| 
| M	src/libshogun/lib/BinaryStream.h
|  
* commit 4d1b73e4f0fa35f112d00b2ed5aa6ef243d59940
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 25 18:28:00 2009 +0000
| 
|     get mkl examples for python/r back to work
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/python/test_mkl.py
| M	examples/r/mkl_classify_christmas_star.R
| M	examples/r/mkl_regression_3sine_waves.R
| M	examples/r/mkl_regression_sine.R
| M	examples/r/string_kernel.R
| M	examples/r/wd_mkl.R
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/r/RInterface.cpp
|  
* commit 3294a563c0a7533f0db9d09358a87a69deee3969
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 25 11:43:17 2009 +0000
| 
|     - implement ridge kernel normalizer and include in static/modular if's
|     - minor fixes to binary stream
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/RidgeKernelNormalizer.h
| M	src/libshogun/lib/BinaryStream.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Kernel.i
|  
* commit 5ce129935d2ec255a6d5636091d8dd960c1f71ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 24 16:54:47 2009 +0000
| 
|     remove empty line
| 
| M	src/libshogun/lib/BinaryStream.h
|  
* commit cbfec1ad0f29fb5f8d227b6e7e0558afab95e16f
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Jul 24 08:37:36 2009 +0000
| 
|     MKL: more more debug output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 8bb45d43a1add14d47830b6884768b1a0db28760
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 20:12:31 2009 +0000
| 
|     MKL: again, more debug output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 87a0b0183ae12b1a07418c5a61fc8f071b659536
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 19:04:28 2009 +0000
| 
|     MKL: even more debug ouput
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 87dd6ad615ef7a4ca599de892fcf831cf5de7cfd
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 18:55:32 2009 +0000
| 
|     MKL: more debugging output
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit cd7c38bbaf1ff7e458ffae19c56c88c967c9964d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 17:59:02 2009 +0000
| 
|     MKL: added assertions and debug-printfs for strange bug in direct reported by Marius
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 094ebf6ee9335d24c126ab6b3f82c56d00f27435
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jul 23 17:09:06 2009 +0000
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 15140c1fa792d6b661dd559fd16fda4994fde97e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 17:01:44 2009 +0000
| 
|     fix wrong call to bias enabled instead of interleaved_enabled
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 83faaa0220cc0e9f78f69f616fa838e62fd8577c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 13:01:23 2009 +0000
| 
|     compute obj. based on new beta
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 97267b6aed75388904cac4fc343224c2654f3e1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 23 09:29:21 2009 +0000
| 
|     binary mmap alike stream
| 
| A	src/libshogun/lib/BinaryStream.h
|  
* commit 2bc2fba74262d080360d30141a4fd827b8db5ea2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 15:44:15 2009 +0000
| 
|     mkl for modular interfaces
| 
| M	src/modular/Classifier.i
| M	src/modular/Regression.i
|  
* commit 781f801ac2a933f64a7498a22896298d021a54a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 06:03:00 2009 +0000
| 
|     compile fixes
| 
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit 9460c63b6bc194d8baf406e5edb06adb5f035409
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 05:57:49 2009 +0000
| 
|     implement set_constraint_generator (to allow for arbitrary svm's in mkl wrapper)
| 
| M	src/NEWS
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 8c5816a43e2d665adbd5fc824e327d950f7ccbeb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 22 05:32:16 2009 +0000
| 
|     fix crasher with CPLEX
| 
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
|  
* commit c96c65bb44dbbb8dd4e65e75db7e737e04f55c2e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:35:55 2009 +0000
| 
|     compile fix when svmlikght is disabled
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 4850e33a9a66932c688a6fadd7152c08ac196a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:31:46 2009 +0000
| 
|     another cplex related compile fix
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit b173310a04e9fee237cddfe40a31ee635f3506a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 18:18:52 2009 +0000
| 
|     compile fix when cplex is available
| 
| M	src/libshogun/classifier/svm/MKL.cpp
|  
* commit 3f404472bd7a5dd51ad4cdd170d0c2f7145e794e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:54:08 2009 +0000
| 
|     list all available options
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
|  
* commit 9a9b3d291aefe76d4f24986526d335fc521f58c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:27:35 2009 +0000
| 
|     remove use_mkl
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit 263933053110e174f54b34df619027c0daf14c03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 16:22:16 2009 +0000
| 
|     adjust for new interface
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
|  
* commit de3f41f9126341eeb9ea47f53ed80b8a26f992ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 15:54:27 2009 +0000
| 
|     set reasonable defaults(?), enable all potential mkl solvers and add gui command to enable interleaved optimization
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| A	src/libshogun/classifier/svm/MKLOneClass.cpp
| A	src/libshogun/classifier/svm/MKLOneClass.h
| D	src/libshogun/classifier/svm/MKLRegression.cpp
| D	src/libshogun/classifier/svm/MKLRegression.h
| D	src/libshogun/classifier/svm/OneClassMKL.cpp
| D	src/libshogun/classifier/svm/OneClassMKL.h
| A	src/libshogun/regression/svr/MKLRegression.cpp
| A	src/libshogun/regression/svr/MKLRegression.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 92a07ebee6c0d978d14ec9527e67aaabcec99a73
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 13:26:50 2009 +0000
| 
|     add oneclass mkl
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| A	src/libshogun/classifier/svm/OneClassMKL.cpp
| A	src/libshogun/classifier/svm/OneClassMKL.h
|  
* commit 0355392f5164cf090aa861a54543d2574a03978a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 21 11:09:10 2009 +0000
| 
|     mkl regression works again
| 
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit 04944fc27e557fdac69859c68e6f0463afce16a1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 18 08:35:12 2009 +0000
| 
|     restructure MKL framework: core routines are the same for regression/classification...
| 
| M	src/NEWS
| M	src/libshogun/classifier/svm/MKL.cpp
| M	src/libshogun/classifier/svm/MKL.h
| M	src/libshogun/classifier/svm/MKLClassification.cpp
| M	src/libshogun/classifier/svm/MKLClassification.h
| M	src/libshogun/classifier/svm/MKLRegression.cpp
| M	src/libshogun/classifier/svm/MKLRegression.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
|    
*   commit c708f3c735cb4892a77e936bc5cbb7fae2da1846
|\  Merge: 013587c f267987
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jul 17 07:40:22 2009 +0000
| | 
| |     * merge in changes from mkl-branch (like more stable mkl impl., obj. computation, multiple features, other kernel normalizers,...)
| |     	- move mkl functions from svmlight to MKL
| |     	- move compute objective function for MKL across MKL objects
| |   
| * commit f267987d2c1445c72f00a8510699d92e9964672b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 12 18:24:03 2009 +0000
| | 
| |     fix compilation
| | 
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/SGInterface.cpp
| |   
| * commit 063372dc338417097f1e7fe09306f780ffcecbaa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun Jul 12 18:10:20 2009 +0000
| | 
| |     set labels / kernel before objective computation
| | 
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit 14aed47decca1d0a6b6412a5f7517c74083c17de
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Mon Jun 29 16:14:12 2009 +0000
| | 
| |     * newton MKL repaired
| |     * direct beta update ("analytically") repaired
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 8cc25afd0bb9001442be70d12afb17047960356d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 17 16:10:05 2009 +0000
| | 
| |     add mkl debug ooutput
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 7bafdd4438e5691349dcd5fe6b9a4c7b88a694c5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 09:08:04 2009 +0000
| | 
| |     print out constraint matrix when CPXaddqconst fails
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit f279458ee01425db110c6e9ca90924ae15e23ed3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:05:31 2009 +0000
| | 
| |     set solver type before svm training (and only for svms currently)
| | 
| | M	src/libshogunui/GUIClassifier.cpp
| |   
| * commit beb39b137d70e7339ed70316abd0151c94568152
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 4 23:48:24 2009 +0000
| | 
| |     print errors...
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 0e9072e0f04f8f7373c04003f98312157046ffcc
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Tue Jun 2 16:40:41 2009 +0000
| | 
| |     Newton MKL furnished with line search
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit bb531b0f46c1fffe2d1a269bfb8c75b75d733ce7
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Tue Jun 2 09:50:27 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 4c048a608005012eca7b17e5e811a5c0d85786e5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 31 18:23:05 2009 +0000
| | 
| |     remove obsolete function
| | 
| | M	src/libshogun/classifier/svm/SVM.h
| |   
| * commit 7124d1157a70bbf00a2a3b8935c169a1994fa6f8
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Fri May 29 15:03:33 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 1929d7a7664498515d7edee5894a9d65cb341885
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 29 08:00:29 2009 +0000
| | 
| |     add new command add_multiple_features for memory eff. mkl on same features
| | 
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit f25cdfd4a295a8ae156aa79334f66f01fdb0c177
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 28 21:11:47 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit e0c9ae22f06a660bbb79577714408d99855f1d2e
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 28 21:00:20 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit 0c06f0254c53b863bac5241c9ca2dc28490c77b3
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Wed May 27 09:29:55 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
| * commit 517050c1b42abbddb5d135bfe637fc400f7ba797
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Wed May 27 09:14:13 2009 +0000
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit fca2b82d1a2da21a614d4ece9b40d6f4f9c4ec44
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 14 22:26:46 2009 +0000
| | 
| |     more newton iterations => faster convergence  :o)
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit a5ca93dec7eb6868644a7d64ac5cfbb399dfca2b
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Thu May 14 14:25:52 2009 +0000
| | 
| |     newton MKL now converges to same solution as the SQCQP-SIP
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| |   
| * commit ce6aedfda5fc7b1215edd96154296416703d0309
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 7 12:17:52 2009 +0000
| | 
| |     fix compilation problem w/ cplex
| | 
| | M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| |   
| * commit 1cbf9ce9b934da813fd83a70a26a022604b8ff57
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 7 07:07:40 2009 +0000
| | 
| |     new kernel normalizer variance use via sg('set_kernel_normalizer', 'VARIANCE')
| | 
| | M	src/libshogun/kernel/CommWordStringKernel.h
| | M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| | M	src/libshogun/kernel/Kernel.h
| | A	src/libshogun/kernel/VarianceKernelNormalizer.h
| | M	src/libshogunui/GUIKernel.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
| * commit ccf6d22cf08fd637ebd2bae828c99f1b14e43b02
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 07:44:54 2009 +0000
| | 
| |     add convenience functions for computing mkl duality gap
| | 
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit 2f6dc878745de050098bbfb03dc48b11df735881
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 07:07:16 2009 +0000
| | 
| |     add exmaple
| | 
| | A	examples/matlab_and_octave/mkl_debug.m
| |   
| * commit e0367aed8c7acc5bc73496d0feee1a705bdbec32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 06:24:11 2009 +0000
| | 
| |     branching off 0.7.3 + alex's mkl newton patch
| | 
| | M	src/libshogun/classifier/svm/MPDSVM.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/lib/versionstring.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
| * commit e0f22212e8c6c2eefe3dc6775f682abf47a85fac
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 2 20:17:22 2009 +0000
| | 
| |     Tagging shogun_0.7.3 release
| | 
| | A	src/libshogun/lib/versionstring.h
| |   
* | commit 013587c96eca07c30358fdb4bcfea2c518522566
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 16 16:09:32 2009 +0000
| | 
| |     interleaved mkl seems to work now :)
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 252b24a466e7861b76f1eaf2a36349a282960f12
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jul 16 08:12:29 2009 +0000
| | 
| |     wip checkin
| | 
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| |   
* | commit d6aac0ae099eb78032695f2c0aefdd26f1f54511
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 16:14:57 2009 +0000
| | 
| |     fix comment
| | 
| | M	src/libshogun/classifier/svm/MKL.h
| |   
* | commit 8992416acd306e5791b103cee079bd5becaba1c2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 11:58:34 2009 +0000
| | 
| |     pass mkl obj in callback function
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit 4b8be5ecf70755fe518f9e76640f6afc511c1e03
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 10:23:41 2009 +0000
| | 
| |     add a helper callback function that takes an MKL object, sumw and suma as input, finally compiles and works again w/ wrapper
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit e1fcc2f73b474e8c0518bc46444c2b55167ea16c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jul 15 08:23:24 2009 +0000
| | 
| |     wip commit
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit b3227a1dd956bce0e552e1cbef8cc8f6f17779e5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 20:44:58 2009 +0000
| | 
| |     remove debug code, minor cleanup
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit cdecb90e400549d2d398f1f0da09b2942b09acec
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 15:52:30 2009 +0000
| | 
| |     1-norm mkl wrapper optimization via glpk works now
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/lib/Mathematics.cpp
| | M	src/libshogun/lib/Mathematics.h
| |   
* | commit 95ca3ed53fbacc3b56188caa2b6ea1396480ff9b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jul 14 09:48:45 2009 +0000
| | 
| |     mkl with nop wrapper works
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit a6d988977551052be191e24e0fa2adabb912a768
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon Jul 13 10:56:52 2009 +0000
| | 
| |     fixed conflict
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit f5b09c05df00db35de329c5e1252adf34c08d911
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jul 13 10:45:05 2009 +0000
| | 
| |     further WIP towards general MKL wrapping
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| |   
* | commit c80abd220669cd96f7cb4bd25adfb729dfdb606e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 29 07:49:21 2009 +0000
| | 
| |     encode full libpath in case of darwin
| | 
| | M	src/configure
| |   
* | commit df2c634c0429849bdccb4511a0b3156ddbf0c9b6
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Fri Jun 26 10:59:32 2009 +0000
| | 
| |     + removed several bugs:
| |       - set_element arguments were in incorrect order
| |       - copy_array/ free_array flags were set incorrectly in some Array2s
| |       - get_{states,scores,positions} did not copy the array structures
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit b2c732815e302d2dd548a894cb9eaaf149001cd3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 25 15:49:48 2009 +0000
| | 
| |     fix typo in doc
| | 
| | M	src/libshogun/kernel/LinearKernel.h
| |   
* | commit d9b1b32ebf25594568a3efb8caa336f10f186181
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 22 18:15:45 2009 +0000
| | 
| |     + added missing typemap for set_content_type_array
| |     + added asertions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Structure.i
| |   
* | commit 97b0beab1c165540a758949b4ed9c759899c58f7
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 22 17:04:05 2009 +0000
| | 
| |     + fixed typemap for 3d array observation_matrix
| |     + added typemap for compute plif matrix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/modular/Structure.i
| | M	src/python_modular/swig_typemaps.i
| |   
* | commit 8c3ff726ea132d29f16fccb9ab9e29da06257645
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Fri Jun 19 15:17:50 2009 +0000
| | 
| |     -- intron lists can be used now...
| |        output reduced
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8a32eee557071485371755628908942fe72fc06c
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 18 15:32:58 2009 +0000
| | 
| |     double free fixed and output reduced
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit f9e62d5bd6408551fdc9af57c4a875d94c4a5c49
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 18 15:32:50 2009 +0000
| | 
| |     -- moved some computations that were duplicated in SGInterface into DynProg.cpp
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit dfb78c264a8a79754bebf2b207b2f7eb1a9ef8a4
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 16:16:44 2009 +0000
| | 
| |     bug fixes
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit d44a55b1bacb365944c18cb06b37f056bd794943
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:55:39 2009 +0000
| | 
| |     removed member variables that were not in use any more
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 05745cc34a952080d137d0da1815805b02bd1951
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:55 2009 +0000
| | 
| |     compile fixes
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 5b7f2d1a6f6ea92ff9036cab3913e8e545c5516f
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:51 2009 +0000
| | 
| |     -- setting all_pos and seq_len in the begining as member variables
| |        avoids passing them all the time
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 671f632b7e5f3ee80214412cfb14d168a97d52d6
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 16 14:45:45 2009 +0000
| | 
| |     started to include Intron Lists in DynProg
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/IntronList.cpp
| | M	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit a5cc72b4a22496c78f1f0af82d212432ca6542af
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:50:21 2009 +0000
| | 
| |     fix get_kernel_weights being transposed to set_kernel_weights
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit afec13a6e1282fc0c2fc48c61e297f664d1dca0b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:41:56 2009 +0000
| | 
| |     convert set_observation_matrix() to use 3d-array
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Structure.i
| |   
* | commit c0a90f5570038ed32326c2f28090771f1093e7aa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 17:25:37 2009 +0000
| | 
| |     split up precompute_content_values
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit eef3f5e86f65ebaebf047d513902d98c765b8856
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:20 2009 +0000
| | 
| |     rename m_seq in DynProg.h as well
| | 
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 75c1147fdf678f6f849a326e0bafbb840d6bf0fd
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:15 2009 +0000
| | 
| |     -- renamed m_seq -> m_observation_matrix
| |        and the function set_seq -> set_observation_matrix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 55e89f446cbcd1605b514f78984d5fc1ef661643
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 16:26:11 2009 +0000
| | 
| |     -- feature matrix was not set in in best_path_trans_deriv interface
| |     -- third dimension of feature matrix was ignored
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 81129c218e35b775d40d329bf723d5c9a9c51fd9
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:52 2009 +0000
| | 
| |     fix typo
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| |   
* | commit 64b11712af05d8cc4fadf571aed753726ff5a093
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:48 2009 +0000
| | 
| |     -- bugfix: penalties were written into the limits array
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| |   
* | commit adc8344753d079c346f9a3d338797eb0d46d33ab
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 15 14:24:39 2009 +0000
| | 
| |     -- removed functions that were not used any more.
| |        Most of them were related to content svm predictions.
| |        They became useless because these predictions are now
| |        done in a separate step before the decoding.
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 22693cbb46f1991b9c1d7c2def9c33d768e832b1
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Mon Jun 15 13:07:43 2009 +0000
| | 
| |     + added typemap to wrap
| |        pm.compute_signal_plifs(...
| | 
| | M	src/modular/Structure.i
| |   
* | commit c642680e4f2ee6a2ca5be0e1dea3ae5be24923fa
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 10:56:16 2009 +0000
| | 
| |     get things to work with octave 3.2 and elwms
| | 
| | M	src/octave/OctaveInterface.cpp
| | M	src/octave/OctaveInterface.h
| |   
* | commit e187baa17765ddedb60436e81614c3119761d9db
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 09:22:13 2009 +0000
| | 
| |     compile fixes for octave 3.2
| | 
| | M	src/configure
| | M	src/octave/OctaveInterface.cpp
| |   
* | commit 1905a1a71edb90a317aa251cfbeff33859e347d4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 15 09:17:32 2009 +0000
| | 
| |     remove obsolete find_values_till_pos functions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit e30b3349d24846fd1f6e8d324f24b36786ba4e75
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 14:37:52 2009 +0000
| | 
| |     collection of hash functions in CHash
| | 
| | M	src/libshogun/lib/Hash.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 261267ac1d537d4cb895ad186b24c1bca756e7dc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 14:29:39 2009 +0000
| | 
| |     add crc32 and md5 string hashing functions
| | 
| | A	src/libshogun/lib/Hash.cpp
| | A	src/libshogun/lib/Hash.h
| | M	src/libshogun/lib/Mathematics.cpp
| | M	src/libshogun/lib/Mathematics.h
| |   
* | commit 932e274011e17fa9f343232c6753c5ed755cfa1d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 10:18:19 2009 +0000
| | 
| |     introduce dummy parameter maxlen
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/modular/Structure.i
| |   
* | commit 4f55b54b000fc8ff3275daac337d7570f2963e73
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 10:06:09 2009 +0000
| | 
| |     - fill in typemaps
| |     - minor compile fixes w/ cplex
| | 
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/regression/svr/SVR_light.cpp
| | M	src/modular/Structure.i
| |   
* | commit 3a64d3f825f5e81fb54e1c472acf85043dfa6cf1
| | Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| | Date:   Fri Jun 12 09:47:31 2009 +0000
| | 
| |     + added PlifMatrix rename/includes
| | 
| | M	src/modular/Structure.i
| |   
* | commit 5c0f8aa95092505073eb6537e451ed66e5e69e30
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 06:59:47 2009 +0000
| | 
| |     update news
| | 
| | M	src/NEWS
| |   
* | commit 145d00af8012b3f7b8975779c3509aaec782e5a9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri Jun 12 06:40:21 2009 +0000
| | 
| |     upon make install of elwms don't install files into R/octave/python if these interfaces were not configured
| | 
| | M	src/Makefile.template
| |   
* | commit 87816285331e34e82b9ea8a0eed918cb36361294
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 14:09:55 2009 +0000
| | 
| |     get rid of struct monster function. things are fully split up now and should work under modular interfaces (given typemaps are added at few places...)
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8ed9e5ed74cf65ba02a9a52895029ae1fa499273
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 13:37:28 2009 +0000
| | 
| |     remove plif_ids, min and max_values from set_plif_struct
| | 
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 91d07f37d52fc5f3faf7aeb4fe0881cb09cdb5d0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 13:14:35 2009 +0000
| | 
| |     start to split up set_plif_struct, move get_zero_terminated_string_copy as static function into StringFeatures
| | 
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/PlifMatrix.cpp
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit d18c4c76ae70484e90d14226613cd465c0590004
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 09:53:11 2009 +0000
| | 
| |     git rid of the PlifArray** arguments in compute_nbest_path /  *trans_deriv
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit acce5a3534d88fb07c6b8eeacc0ccad5fdcdad1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu Jun 11 05:46:10 2009 +0000
| | 
| |     extract plif related functions from GUIStructure into new class PlifMatrix
| | 
| | M	src/libshogun/lib/Array.h
| | A	src/libshogun/structure/PlifMatrix.cpp
| | A	src/libshogun/structure/PlifMatrix.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 18479fb1710fe1153dc14ce34aebc8690cc32d87
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 18:31:11 2009 +0000
| | 
| |     - remove the output arguments from best_path* functions and use member variables to store the results and seperate get_* functions to obtain the output member variables
| |     - properly initialize output member variables
| |     - rename function best_path_trans to compute_nbest_paths() and remove templated implementation
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/Plif.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 563d4e5841b9201c09f106b44d9b7e146f0d59cd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 14:18:30 2009 +0000
| | 
| |     remove best_path prefix
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 10dec52610d08e2755496ad10110531ea180e75e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 13:19:24 2009 +0000
| | 
| |     remove sparse args from best_path_trans and move the templated function into the .h file (yes that is the policy ... should get rid of templates)
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 38ce3aafc54925545072ec3d0b1d1f589aae3971
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 11:47:14 2009 +0000
| | 
| |     remove orf_info form best_path_trans{,_derif}
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 9b4302fc5bd26e4692919e2dc165383c3907c8f5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 11:08:08 2009 +0000
| | 
| |     remove orf_info from best_path_trans
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 3aea0afca983d5a0ad7c2e2ba595608ec1ea0630
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 10:50:20 2009 +0000
| | 
| |     get rid of seq argument in best_path_trans
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 52c711ee192d22ca4f2cc8564a34302b6a0b16e0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 09:39:22 2009 +0000
| | 
| |     move wordstr creation into DynProg
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 371094ddb6c79df8ee4830c148bb12bc92b60143
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 08:32:30 2009 +0000
| | 
| |     remove code duplication and move translate_from_single_order to Alphabet and make dynprog and stringfeatures use this
| | 
| | M	src/libshogun/features/Alphabet.h
| | M	src/libshogun/features/StringFeatures.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 27f8e0c752b6ed473e64b8bcc9215cd45e012360
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 08:00:31 2009 +0000
| | 
| |     genestr, genestr_num and length are no longer passed as arguments (internally functions use m_genestr instead)
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit cbd7596807bae6a479cc800f02cd72ac35431c1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 07:32:27 2009 +0000
| | 
| |     - introduce function set_gene_string(char* s, int32_t len) (no longer 2d!)
| |     - remove function set_genestr_len, length is obtained from gene_string anyway
| |     - get rid of all the m_step m_call variables, no one knows which values they should take anyway
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 7b4c8426bba0b881b5166ccacdb352201160f11d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 06:12:59 2009 +0000
| | 
| |     merge member variables dict_weight and m_dict_weight
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 3d8752576e4e87359b763eac92b8fd2e5e058800
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 10 06:04:18 2009 +0000
| | 
| |     removed member variable m_dict_weights_array, still works
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 9868fa77be2e8ee624735ec9ccead9e42c439a5a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:51:46 2009 +0000
| | 
| |     - remove obsolete best_path_2struct/simple functions
| |     - prefix all member variables with m_ (except for dict_weights)
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 199f84c2649a587687077697cf024b2af4742ec3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:19:35 2009 +0000
| | 
| |     replace N -> m_N
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 718591e53064430637b6c4a05d6489e5819f7afd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 16:04:05 2009 +0000
| | 
| |     further m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 8f2f2ca064e51ef232a8c1013a0ea9154f8c8713
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:28:50 2009 +0000
| | 
| |     further m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 07d919b36ff9e239c106f12bfe0b3292d7c8196e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 15:10:35 2009 +0000
| | 
| |     continue m_ prefixing
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 61c5bf935206fa7bd8668385746ab37661ce7eb8
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue Jun 9 14:48:23 2009 +0000
| | 
| |     -- new class IntronList created
| |       stores a list of supported introns for efficient access during the dynamic programm
| |     --functions of the class tested with valgrind
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | A	src/libshogun/structure/IntronList.cpp
| | A	src/libshogun/structure/IntronList.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit b38d5452cb41c3ba99e02a6058c4c14ec21cbcfb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 14:35:23 2009 +0000
| | 
| |     - remove inline functions
| |     - start prefixing member variables with m_ (first m_max_a_id )
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 1e89c3480f8dfb89e3e13ffa111fcbab32487a7d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 09:09:37 2009 +0000
| | 
| |     fix some obvious mixups between parameters p_N and N etc and make all variables protected
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit 4bf4f406f3d3bb802863a2c45fe806677b3a409d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 9 07:07:21 2009 +0000
| | 
| |     compile fixes for line-search...
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit d7e5efe6dca3fd295a4721ec0d2c441528acfdf6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 8 21:11:34 2009 +0000
| | 
| |     potentially speed up multi-class svm working set selection
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 0d5384e440e797e718ce4a1471e528de91bcda37
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 3 10:05:30 2009 +0000
| | 
| |     fix rare compilation error
| | 
| | M	src/python/PythonInterface.cpp
| |   
* | commit 8362ede336dd20d38a56664a25f0e8133e92242a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 3 09:56:11 2009 +0000
| | 
| |     fix custom kernel init
| | 
| | M	src/libshogun/kernel/CombinedKernel.cpp
| |   
* | commit 103fa81e35b235d360ceaefb0770c3d8955078bf
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 2 13:52:01 2009 +0000
| | 
| |     fix off by one bug
| | 
| | M	src/libshogun/kernel/CombinedKernel.h
| |   
* | commit 5c537f61c830d997072c64eddce7bddf7bd0a8a9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 2 06:59:18 2009 +0000
| | 
| |     now features can be embedded into WORD/ULONG immediately without the need for an extra convert cmd, e.g.
| |     
| |     sg('add_features','TRAIN',{x},'DNAWORD', 3, 'from_position_list', 4, int32([0,1,2,3,4]));
| | 
| | M	src/libshogun/base/SGObject.h
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/lib/io.cpp
| | M	src/libshogun/lib/io.h
| | M	src/libshogunui/GUIKernel.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 3ed306b0f3e9aa41089ea42eaaf46e2f7acc4df2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 1 09:05:01 2009 +0000
| | 
| |     fix a crasher when set_kernel is used followed by add_kernel
| | 
| | M	src/libshogunui/GUIKernel.cpp
| |   
* | commit f05057448fabb7a2f86d24e2adab6ec9e3945f64
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 1 08:51:50 2009 +0000
| | 
| |     remove commands from_position_list and slide_window and move functionallity into set/add_features, e.g.:
| |     
| |     x='CATCTGACGTCAGGTACGTACGGCGTGGGCATCATG';
| |     sg('add_features','TRAIN',{x},'DNA', 'slide_window', 4, 1,0);
| |     sg('add_features','TRAIN',{x},'DNA', 'from_position_list', 4, int32([0,1,2,3,4]), 1);
| | 
| | M	src/CONTRIBUTIONS
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/GUIFeatures.cpp
| | M	src/libshogunui/GUIFeatures.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit b5a3dc56b1e3dcfbac99d725151d1bda2a16471f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 31 06:08:18 2009 +0000
| | 
| |     fix a couple of memory leaks
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 8941688428bd1fd0a8c155c9eedb0f9dd078811e
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sat May 30 17:50:25 2009 +0000
| | 
| |     disabled some experimental code
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 6d8beaf496f4d71a491f0487fee02a4aff7c6ad9
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sat May 30 15:28:44 2009 +0000
| | 
| |     compile fixes ...
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| |   
* | commit 85a76e33441fa5e08f7c3ef01c784fad2de7b41f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 29 17:50:11 2009 +0000
| | 
| |     further mkl restructuring
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| |   
* | commit 8c98f10dae6c64461c0e3764c92b75ee6e68bd27
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 20:17:35 2009 +0000
| | 
| |     MCSVM seems to work OK now
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 77182de4cb7fbad6abe46cdf0c0b1a02044a5c15
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 19:42:51 2009 +0000
| | 
| |     add debug code
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| |   
* | commit 2c77e63a33f050b01de7dd80513d6df473f2dd8d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 17:24:37 2009 +0000
| | 
| |     more on testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MCSVM.h
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit bcc6d20f2403e3ba5a42abeff20356e29c03bf20
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 15:07:59 2009 +0000
| | 
| |     first attempt on implementing mc-testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 70aea2a53359cc3582485454cbfcfc9b69a66992
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 09:45:31 2009 +0000
| | 
| |     starting work on passing the classifier back to shogun for testing
| | 
| | M	src/libshogun/classifier/svm/MCSVM.cpp
| | M	src/libshogun/classifier/svm/MultiClassSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 282cad926b4e6fb9cce707b2c54e9e682ca34dfe
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 28 08:28:17 2009 +0000
| | 
| |     wrap set_subkernel_weights
| | 
| | M	src/modular/Kernel.i
| |   
* | commit 39cb4192e22af137039b94ddab0bce708100edd9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:41:49 2009 +0000
| | 
| |     progress output / bugfixes for MCSVM
| | 
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/MCSVM.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 66d62120f8a727380e17347aba3cf2fe097636c1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:16:58 2009 +0000
| | 
| |     mcsvm entry class
| | 
| | A	src/libshogun/classifier/svm/MCSVM.cpp
| | A	src/libshogun/classifier/svm/MCSVM.h
| |   
* | commit 7b62e7e684b705593981d3f30043c8c37cd742a6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 10:16:02 2009 +0000
| | 
| |     merge MCSVM from multiclass branch
| | 
| | M	src/libshogun/classifier/svm/LibSVM.cpp
| | M	src/libshogun/classifier/svm/LibSVM.h
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src/libshogun/classifier/svm/LibSVMNU.cpp
| | D	src/libshogun/classifier/svm/LibSVMNU.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 6fab8aaf941b652c1aa2d5ba83fc68899b345804
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 06:20:42 2009 +0000
| | 
| |     get things to compile again and change svm_one_class_nu to svm_nu
| | 
| | M	src/NEWS
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/MKLRegression.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 0bb41b513068a3c5351dcfdb7d101dd5aef606b6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 27 05:12:15 2009 +0000
| | 
| |     starting to port mc svm, *don't use, won't compile*
| | 
| | M	src/libshogun/classifier/Classifier.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 49e84ef7a11b06675df492d524237de241bdda95
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 26 16:36:57 2009 +0000
| | 
| |     change soname
| | 
| | M	src/NEWS
| |   
* | commit fe5aa080a8fb14a8aea98c55bad31ceb4c049f1e
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 26 16:08:50 2009 +0000
| | 
| |     allow nu svm for multiclass
| | 
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| | M	src/libshogun/classifier/svm/SVM_libsvm.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 2c41706d2972bf13665df855631b35acf8e00cf9
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 13:03:31 2009 +0000
| | 
| |     mem leak fixed
| | 
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 1b477c9038ab63f7d86f348ae02ba5fa07c63191
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:52:52 2009 +0000
| | 
| |     fix typo
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 9a6b71e1b650be40bb16b8753245546c15d9f12b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:35:27 2009 +0000
| | 
| |     remove debug code
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| |   
* | commit 9f6e711d0f7f55840a6815b1098c51eb5788367a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 12:18:56 2009 +0000
| | 
| |     a default constructor (as this change implements) is needed to get the modular interfaces to compile
| | 
| | M	src/libshogun/lib/Array2.h
| |   
* | commit f48d97c4426e4796abf42d5823cd2a4d6f466c0f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 11:50:52 2009 +0000
| | 
| |     fix libsvmnu
| | 
| | M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit 0a4bdd70feab9cb78776abb6958e73db7b962442
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:40:32 2009 +0000
| | 
| |     fixed finite renaming
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit f30960ce273e954336f3ea0928637884b0b00b32
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:38:22 2009 +0000
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 0d2dcfb6d855503b81de3607a4844cfbb6cde278
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:32:52 2009 +0000
| | 
| |     implemented support for sparse seq arrays (untested)
| | 
| | M	src/libshogun/features/SparseFeatures.h
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/GUICommands.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/libshogunui/SGInterface.h
| |   
* | commit 21c7c813b92d68764277b18b9d77e5319d647c96
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Fri May 22 10:27:50 2009 +0000
| | 
| |     cleanups and memory leak fixes
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogunui/GUIStructure.cpp
| | M	src/libshogunui/GUIStructure.h
| | M	src/libshogunui/SGInterface.cpp
| | M	src/octave/OctaveInterface.cpp
| |   
* | commit 1d81e011477a5b334584d74910e292c9cdbe7f49
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 22 09:21:25 2009 +0000
| | 
| |     lots of compile fixes (dynprog still does not work with modular IF's)
| | 
| | M	src/libshogun/classifier/svm/LibSVMNU.cpp
| | M	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/lib/Array2.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/SGInterface.cpp
| | M	src/modular/Classifier.i
| |   
* | commit 94d9333fe5f39833a3684ee9efc2fe4ef071cf00
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 20:49:47 2009 +0000
| | 
| |     add NU LibSVM
| | 
| | M	src/libshogun/classifier/Classifier.h
| | A	src/libshogun/classifier/svm/LibSVMNU.cpp
| | A	src/libshogun/classifier/svm/LibSVMNU.h
| | M	src/libshogunui/GUIClassifier.cpp
| | M	src/libshogunui/GUIClassifier.h
| | M	src/modular/Classifier.i
| |   
* | commit 1a810eedaf560cb36adeeb5647cf453e6765f395
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:36:28 2009 +0000
| | 
| |     fix mmxext etc detection
| | 
| | M	src/configure
| |   
* | commit 67ae10e52bbe7497234c46698b16271d8f537f98
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:28:25 2009 +0000
| | 
| |     merge mplayers recent configure cpu flag detection
| | 
| | M	src/configure
| |   
* | commit d449e13aeeff07f90dbb5bdfb303513dce825919
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:09:06 2009 +0000
| | 
| |     fix core2 detection
| | 
| | M	src/configure
| |   
* | commit 79b10c81990fedb6e14017369a28178631af7ac5
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 20 05:00:40 2009 +0000
| | 
| |     this should speedup things a lot for core2 and other recent cpus - fix cpu detection logic
| | 
| | M	src/configure
| |   
* | commit e4922b3ddca67c8625dfe343e9ef69e190910714
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 18:54:15 2009 +0000
| | 
| |     still buggy...
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit d345f83322b0a3ccb2af40a5a37a3f93e4eb67bf
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 17:56:36 2009 +0000
| | 
| |     version without loss seems to work now.
| | 
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 1c120936144f03ef1a0907bacd54810c042cb517
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 14:56:39 2009 +0000
| | 
| |     first part of long transitions code
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| | M	src/libshogun/structure/Plif.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogun/structure/PlifArray.cpp
| | M	src/libshogun/structure/PlifArray.h
| | M	src/libshogun/structure/PlifBase.h
| | M	src/libshogunui/SGInterface.cpp
| |   
* | commit ab2f7eaa0d820d9d4a1fcb66a22f8e2e88bed3b2
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Mon May 18 11:29:08 2009 +0000
| | 
| |     intermediate code ...
| | 
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/lib/Array2.h
| | M	src/libshogun/lib/Array3.h
| | M	src/libshogun/structure/DynProg.cpp
| |   
* | commit 00635532dfdf08cf9d8b7840152ae1b33f40f8a0
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon May 18 03:52:21 2009 +0000
| | 
| |     fix documentation, DNA is only A,C,G,T
| | 
| | M	src/libshogun/features/Alphabet.h
| |   
* | commit d1c7df0e32fd8ad48cf76591fc69adf425576e06
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 16:21:02 2009 +0000
| | 
| |     first changes towards a faster DynProg + conflict resolution
| | 
| | M	src/libshogun/lib/Array.h
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit b64fe29358e9b85e1a06bd6995fb472bb0f9ce6e
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 16:18:42 2009 +0000
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/DynProg.h
| |   
* | commit b30908b985ae947612afacfc013dae83a5ee4d6c
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:14:47 2009 +0000
| | 
| |     one bug fix related to plifs
| |     prepared some extensions
| | 
| | M	src/libshogun/structure/DynProg.cpp
| | M	src/libshogun/structure/Plif.h
| | M	src/libshogunui/GUIStructure.cpp
| |   
* | commit 332b0bfdb2cac7c3081d5cac9a934079e6debcf2
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:13:04 2009 +0000
| | 
| |     this is the current version of shogun which works with mGene.web
| | 
| | D	src_galaxy_branch/.authors
| | D	src_galaxy_branch/.doxy2swig.py
| | D	src_galaxy_branch/.generate_link_dependencies.py
| | D	src_galaxy_branch/.r-install.sh
| | D	src_galaxy_branch/.relpath.py
| | D	src_galaxy_branch/.scrub_docstrings.py
| | D	src_galaxy_branch/.version.sh
| | D	src_galaxy_branch/AUTHORS
| | D	src_galaxy_branch/CONTRIBUTIONS
| | D	src_galaxy_branch/COPYRIGHT
| | D	src_galaxy_branch/ChangeLog
| | D	src_galaxy_branch/INSTALL
| | D	src_galaxy_branch/LICENSE
| | D	src_galaxy_branch/LICENSE.SVMlight
| | D	src_galaxy_branch/Makefile
| | D	src_galaxy_branch/Makefile.template
| | D	src_galaxy_branch/NEWS
| | D	src_galaxy_branch/README
| | D	src_galaxy_branch/README.developer
| | D	src_galaxy_branch/README.soname
| | D	src_galaxy_branch/cmdline/CmdLineInterface.cpp
| | D	src_galaxy_branch/cmdline/CmdLineInterface.h
| | D	src_galaxy_branch/cmdline/cmdline.cpp
| | D	src_galaxy_branch/configure
| | D	src_galaxy_branch/elwms/elwms.cpp
| | D	src_galaxy_branch/libshogun/base/Parallel.cpp
| | D	src_galaxy_branch/libshogun/base/Parallel.h
| | D	src_galaxy_branch/libshogun/base/SGObject.cpp
| | D	src_galaxy_branch/libshogun/base/SGObject.h
| | D	src_galaxy_branch/libshogun/base/Version.cpp
| | D	src_galaxy_branch/libshogun/base/Version.h
| | D	src_galaxy_branch/libshogun/base/init.cpp
| | D	src_galaxy_branch/libshogun/base/init.h
| | D	src_galaxy_branch/libshogun/classifier/Classifier.cpp
| | D	src_galaxy_branch/libshogun/classifier/Classifier.h
| | D	src_galaxy_branch/libshogun/classifier/KNN.cpp
| | D	src_galaxy_branch/libshogun/classifier/KNN.h
| | D	src_galaxy_branch/libshogun/classifier/KernelPerceptron.cpp
| | D	src_galaxy_branch/libshogun/classifier/KernelPerceptron.h
| | D	src_galaxy_branch/libshogun/classifier/LDA.cpp
| | D	src_galaxy_branch/libshogun/classifier/LDA.h
| | D	src_galaxy_branch/libshogun/classifier/LPBoost.cpp
| | D	src_galaxy_branch/libshogun/classifier/LPBoost.h
| | D	src_galaxy_branch/libshogun/classifier/LPM.cpp
| | D	src_galaxy_branch/libshogun/classifier/LPM.h
| | D	src_galaxy_branch/libshogun/classifier/LinearClassifier.cpp
| | D	src_galaxy_branch/libshogun/classifier/LinearClassifier.h
| | D	src_galaxy_branch/libshogun/classifier/Perceptron.cpp
| | D	src_galaxy_branch/libshogun/classifier/Perceptron.h
| | D	src_galaxy_branch/libshogun/classifier/PluginEstimate.cpp
| | D	src_galaxy_branch/libshogun/classifier/PluginEstimate.h
| | D	src_galaxy_branch/libshogun/classifier/SubGradientLPM.cpp
| | D	src_galaxy_branch/libshogun/classifier/SubGradientLPM.h
| | D	src_galaxy_branch/libshogun/classifier/__init__.py
| | D	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibLinear.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibLinear.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.h
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.h
| | D	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMLin.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMLin.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_light.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_light.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.h
| | D	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.h
| | D	src_galaxy_branch/libshogun/classifier/svm/Tron.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/Tron.h
| | D	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/__init__.py
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnplib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnplib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gnpplib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gnpplib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdt.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdt.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.h
| | D	src_galaxy_branch/libshogun/classifier/svm/gpm.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/gpm.h
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas.h
| | D	src_galaxy_branch/libshogun/classifier/svm/libocas_common.h
| | D	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.h
| | D	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.h
| | D	src_galaxy_branch/libshogun/classifier/svm/ssl.cpp
| | D	src_galaxy_branch/libshogun/classifier/svm/ssl.h
| | D	src_galaxy_branch/libshogun/clustering/Hierarchical.cpp
| | D	src_galaxy_branch/libshogun/clustering/Hierarchical.h
| | D	src_galaxy_branch/libshogun/clustering/KMeans.cpp
| | D	src_galaxy_branch/libshogun/clustering/KMeans.h
| | D	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.h
| | D	src_galaxy_branch/libshogun/distance/CanberraMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/CanberraMetric.h
| | D	src_galaxy_branch/libshogun/distance/CanberraWordDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/CanberraWordDistance.h
| | D	src_galaxy_branch/libshogun/distance/ChebyshewMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/ChebyshewMetric.h
| | D	src_galaxy_branch/libshogun/distance/ChiSquareDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/ChiSquareDistance.h
| | D	src_galaxy_branch/libshogun/distance/CosineDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/CosineDistance.h
| | D	src_galaxy_branch/libshogun/distance/Distance.cpp
| | D	src_galaxy_branch/libshogun/distance/Distance.h
| | D	src_galaxy_branch/libshogun/distance/DistanceMachine.cpp
| | D	src_galaxy_branch/libshogun/distance/DistanceMachine.h
| | D	src_galaxy_branch/libshogun/distance/EuclidianDistance.cpp
| | D	src_galaxy_branch/libshogun/distance/EuclidianDistance.h
| | D	src_galaxy_branch/libshogun/distance/GeodesicMetric.cpp
| | D	src_galaxy_branch/libshogun/distance/GeodesicMetric.h
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| | D	src_galaxy_branch/libshogun/regression/svr/LibSVR.cpp
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| | D	src_galaxy_branch/libshogunui/GUIStructure.cpp
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| | D	src_galaxy_branch/libshogunui/SGInterface.cpp
| | D	src_galaxy_branch/libshogunui/SGInterface.h
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| | D	src_galaxy_branch/modular/Structure.doxy
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| | D	src_galaxy_branch/octave/OctaveInterface.cpp
| | D	src_galaxy_branch/octave/OctaveInterface.h
| | D	src_galaxy_branch/octave_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/octave_modular/swig_typemaps.i
| | D	src_galaxy_branch/python/PythonInterface.cpp
| | D	src_galaxy_branch/python/PythonInterface.h
| | D	src_galaxy_branch/python_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/python_modular/swig_typemaps.i
| | D	src_galaxy_branch/r/RInterface.cpp
| | D	src_galaxy_branch/r/RInterface.h
| | D	src_galaxy_branch/r_modular/sg_print_functions.cpp
| | D	src_galaxy_branch/r_modular/swig_typemaps.i
| |   
* | commit 773fb2b245b94e77fdb1985d86e00c456b5b8b19
| | Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| | Date:   Sun May 17 12:04:45 2009 +0000
| | 
| | A	src_galaxy_branch/.authors
| | A	src_galaxy_branch/.doxy2swig.py
| | A	src_galaxy_branch/.generate_link_dependencies.py
| | A	src_galaxy_branch/.r-install.sh
| | A	src_galaxy_branch/.relpath.py
| | A	src_galaxy_branch/.scrub_docstrings.py
| | A	src_galaxy_branch/.version.sh
| | A	src_galaxy_branch/AUTHORS
| | A	src_galaxy_branch/CONTRIBUTIONS
| | A	src_galaxy_branch/COPYRIGHT
| | A	src_galaxy_branch/ChangeLog
| | A	src_galaxy_branch/INSTALL
| | A	src_galaxy_branch/LICENSE
| | A	src_galaxy_branch/LICENSE.SVMlight
| | A	src_galaxy_branch/Makefile
| | A	src_galaxy_branch/Makefile.template
| | A	src_galaxy_branch/NEWS
| | A	src_galaxy_branch/README
| | A	src_galaxy_branch/README.developer
| | A	src_galaxy_branch/README.soname
| | A	src_galaxy_branch/cmdline/CmdLineInterface.cpp
| | A	src_galaxy_branch/cmdline/CmdLineInterface.h
| | A	src_galaxy_branch/cmdline/cmdline.cpp
| | A	src_galaxy_branch/configure
| | A	src_galaxy_branch/elwms/elwms.cpp
| | A	src_galaxy_branch/libshogun/base/Parallel.cpp
| | A	src_galaxy_branch/libshogun/base/Parallel.h
| | A	src_galaxy_branch/libshogun/base/SGObject.cpp
| | A	src_galaxy_branch/libshogun/base/SGObject.h
| | A	src_galaxy_branch/libshogun/base/Version.cpp
| | A	src_galaxy_branch/libshogun/base/Version.h
| | A	src_galaxy_branch/libshogun/base/init.cpp
| | A	src_galaxy_branch/libshogun/base/init.h
| | A	src_galaxy_branch/libshogun/classifier/Classifier.cpp
| | A	src_galaxy_branch/libshogun/classifier/Classifier.h
| | A	src_galaxy_branch/libshogun/classifier/KNN.cpp
| | A	src_galaxy_branch/libshogun/classifier/KNN.h
| | A	src_galaxy_branch/libshogun/classifier/KernelPerceptron.cpp
| | A	src_galaxy_branch/libshogun/classifier/KernelPerceptron.h
| | A	src_galaxy_branch/libshogun/classifier/LDA.cpp
| | A	src_galaxy_branch/libshogun/classifier/LDA.h
| | A	src_galaxy_branch/libshogun/classifier/LPBoost.cpp
| | A	src_galaxy_branch/libshogun/classifier/LPBoost.h
| | A	src_galaxy_branch/libshogun/classifier/LPM.cpp
| | A	src_galaxy_branch/libshogun/classifier/LPM.h
| | A	src_galaxy_branch/libshogun/classifier/LinearClassifier.cpp
| | A	src_galaxy_branch/libshogun/classifier/LinearClassifier.h
| | A	src_galaxy_branch/libshogun/classifier/Perceptron.cpp
| | A	src_galaxy_branch/libshogun/classifier/Perceptron.h
| | A	src_galaxy_branch/libshogun/classifier/PluginEstimate.cpp
| | A	src_galaxy_branch/libshogun/classifier/PluginEstimate.h
| | A	src_galaxy_branch/libshogun/classifier/SubGradientLPM.cpp
| | A	src_galaxy_branch/libshogun/classifier/SubGradientLPM.h
| | A	src_galaxy_branch/libshogun/classifier/__init__.py
| | A	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/CPLEXSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GMNPSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GNPPSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/GPBTSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibLinear.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibLinear.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMMultiClass.h
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/LibSVMOneClass.h
| | A	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/MPDSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/MultiClassSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMLin.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMLin.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMOcas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVMSGD.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_libsvm.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_light.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_light.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SVM_linear.h
| | A	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/SubGradientSVM.h
| | A	src_galaxy_branch/libshogun/classifier/svm/Tron.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/Tron.h
| | A	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/WDSVMOcas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/__init__.py
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnplib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnplib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gmnpmkl.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gnpplib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gnpplib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdt.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdt.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpdtsolve.h
| | A	src_galaxy_branch/libshogun/classifier/svm/gpm.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/gpm.h
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas.h
| | A	src_galaxy_branch/libshogun/classifier/svm/libocas_common.h
| | A	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/pr_loqo.h
| | A	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/qpbsvmlib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/qpssvmlib.h
| | A	src_galaxy_branch/libshogun/classifier/svm/ssl.cpp
| | A	src_galaxy_branch/libshogun/classifier/svm/ssl.h
| | A	src_galaxy_branch/libshogun/clustering/Hierarchical.cpp
| | A	src_galaxy_branch/libshogun/clustering/Hierarchical.h
| | A	src_galaxy_branch/libshogun/clustering/KMeans.cpp
| | A	src_galaxy_branch/libshogun/clustering/KMeans.h
| | A	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/BrayCurtisDistance.h
| | A	src_galaxy_branch/libshogun/distance/CanberraMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/CanberraMetric.h
| | A	src_galaxy_branch/libshogun/distance/CanberraWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/CanberraWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/ChebyshewMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/ChebyshewMetric.h
| | A	src_galaxy_branch/libshogun/distance/ChiSquareDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/ChiSquareDistance.h
| | A	src_galaxy_branch/libshogun/distance/CosineDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/CosineDistance.h
| | A	src_galaxy_branch/libshogun/distance/Distance.cpp
| | A	src_galaxy_branch/libshogun/distance/Distance.h
| | A	src_galaxy_branch/libshogun/distance/DistanceMachine.cpp
| | A	src_galaxy_branch/libshogun/distance/DistanceMachine.h
| | A	src_galaxy_branch/libshogun/distance/EuclidianDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/EuclidianDistance.h
| | A	src_galaxy_branch/libshogun/distance/GeodesicMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/GeodesicMetric.h
| | A	src_galaxy_branch/libshogun/distance/HammingWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/HammingWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/JensenMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/JensenMetric.h
| | A	src_galaxy_branch/libshogun/distance/ManhattanMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/ManhattanMetric.h
| | A	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/ManhattanWordDistance.h
| | A	src_galaxy_branch/libshogun/distance/MinkowskiMetric.cpp
| | A	src_galaxy_branch/libshogun/distance/MinkowskiMetric.h
| | A	src_galaxy_branch/libshogun/distance/RealDistance.h
| | A	src_galaxy_branch/libshogun/distance/SimpleDistance.h
| | A	src_galaxy_branch/libshogun/distance/SparseDistance.h
| | A	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/SparseEuclidianDistance.h
| | A	src_galaxy_branch/libshogun/distance/StringDistance.h
| | A	src_galaxy_branch/libshogun/distance/TanimotoDistance.cpp
| | A	src_galaxy_branch/libshogun/distance/TanimotoDistance.h
| | A	src_galaxy_branch/libshogun/distributions/Distribution.cpp
| | A	src_galaxy_branch/libshogun/distributions/Distribution.h
| | A	src_galaxy_branch/libshogun/distributions/histogram/Histogram.cpp
| | A	src_galaxy_branch/libshogun/distributions/histogram/Histogram.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/GHMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/GHMM.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/HMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/HMM.h
| | A	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.cpp
| | A	src_galaxy_branch/libshogun/distributions/hmm/LinearHMM.h
| | A	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.cpp
| | A	src_galaxy_branch/libshogun/evaluation/PerformanceMeasures.h
| | A	src_galaxy_branch/libshogun/features/Alphabet.cpp
| | A	src_galaxy_branch/libshogun/features/Alphabet.h
| | A	src_galaxy_branch/libshogun/features/AttributeFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/AttributeFeatures.h
| | A	src_galaxy_branch/libshogun/features/CombinedDotFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/CombinedDotFeatures.h
| | A	src_galaxy_branch/libshogun/features/CombinedFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/CombinedFeatures.h
| | A	src_galaxy_branch/libshogun/features/DotFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/DotFeatures.h
| | A	src_galaxy_branch/libshogun/features/DummyFeatures.h
| | A	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/ExplicitSpecFeatures.h
| | A	src_galaxy_branch/libshogun/features/FKFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/FKFeatures.h
| | A	src_galaxy_branch/libshogun/features/Features.cpp
| | A	src_galaxy_branch/libshogun/features/Features.h
| | A	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/ImplicitWeightedSpecFeatures.h
| | A	src_galaxy_branch/libshogun/features/Labels.cpp
| | A	src_galaxy_branch/libshogun/features/Labels.h
| | A	src_galaxy_branch/libshogun/features/MindyGramFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/MindyGramFeatures.h
| | A	src_galaxy_branch/libshogun/features/RealFileFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/RealFileFeatures.h
| | A	src_galaxy_branch/libshogun/features/SimpleFeatures.h
| | A	src_galaxy_branch/libshogun/features/SparseFeatures.h
| | A	src_galaxy_branch/libshogun/features/StringFeatures.h
| | A	src_galaxy_branch/libshogun/features/TOPFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/TOPFeatures.h
| | A	src_galaxy_branch/libshogun/features/WDFeatures.cpp
| | A	src_galaxy_branch/libshogun/features/WDFeatures.h
| | A	src_galaxy_branch/libshogun/features/__init__.py
| | A	src_galaxy_branch/libshogun/kernel/AUCKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/AUCKernel.h
| | A	src_galaxy_branch/libshogun/kernel/AvgDiagKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/Chi2Kernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/Chi2Kernel.h
| | A	src_galaxy_branch/libshogun/kernel/CombinedKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CombinedKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CommUlongStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CommWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/ConstKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/ConstKernel.h
| | A	src_galaxy_branch/libshogun/kernel/CustomKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/CustomKernel.h
| | A	src_galaxy_branch/libshogun/kernel/DiagKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/DiagKernel.h
| | A	src_galaxy_branch/libshogun/kernel/DiceKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/DistanceKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/DistanceKernel.h
| | A	src_galaxy_branch/libshogun/kernel/FirstElementKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/FixedDegreeStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianShiftKernel.h
| | A	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/GaussianShortRealKernel.h
| | A	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/HistogramWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/IdentityKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/Kernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/Kernel.h
| | A	src_galaxy_branch/libshogun/kernel/KernelMachine.cpp
| | A	src_galaxy_branch/libshogun/kernel/KernelMachine.h
| | A	src_galaxy_branch/libshogun/kernel/KernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/LinearByteKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearByteKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LinearWordKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LinearWordKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LocalAlignmentStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/LocalityImprovedStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/MatchWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/MindyGramKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/MindyGramKernel.h
| | A	src_galaxy_branch/libshogun/kernel/OligoStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/OligoStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/PolyMatchWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/PyramidChi2.cpp
| | A	src_galaxy_branch/libshogun/kernel/PyramidChi2.h
| | A	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SalzbergWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SigmoidKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SigmoidKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SimpleKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparseGaussianKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparseLinearKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/SparsePolyKernel.h
| | A	src_galaxy_branch/libshogun/kernel/SqrtDiagKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/StringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/TanimotoKernelNormalizer.h
| | A	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/TensorProductPairKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedCommWordStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreePositionStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.cpp
| | A	src_galaxy_branch/libshogun/kernel/WeightedDegreeStringKernel.h
| | A	src_galaxy_branch/libshogun/kernel/__init__.py
| | A	src_galaxy_branch/libshogun/lib/Array.h
| | A	src_galaxy_branch/libshogun/lib/Array2.h
| | A	src_galaxy_branch/libshogun/lib/Array3.h
| | A	src_galaxy_branch/libshogun/lib/BitString.h
| | A	src_galaxy_branch/libshogun/lib/Cache.h
| | A	src_galaxy_branch/libshogun/lib/Cplex.cpp
| | A	src_galaxy_branch/libshogun/lib/Cplex.h
| | A	src_galaxy_branch/libshogun/lib/DynInt.h
| | A	src_galaxy_branch/libshogun/lib/DynamicArray.h
| | A	src_galaxy_branch/libshogun/lib/File.cpp
| | A	src_galaxy_branch/libshogun/lib/File.h
| | A	src_galaxy_branch/libshogun/lib/List.h
| | A	src_galaxy_branch/libshogun/lib/Mathematics.cpp
| | A	src_galaxy_branch/libshogun/lib/Mathematics.h
| | A	src_galaxy_branch/libshogun/lib/MemoryMappedFile.h
| | A	src_galaxy_branch/libshogun/lib/ShogunException.cpp
| | A	src_galaxy_branch/libshogun/lib/ShogunException.h
| | A	src_galaxy_branch/libshogun/lib/Signal.cpp
| | A	src_galaxy_branch/libshogun/lib/Signal.h
| | A	src_galaxy_branch/libshogun/lib/SimpleFile.h
| | A	src_galaxy_branch/libshogun/lib/Time.cpp
| | A	src_galaxy_branch/libshogun/lib/Time.h
| | A	src_galaxy_branch/libshogun/lib/Trie.cpp
| | A	src_galaxy_branch/libshogun/lib/Trie.h
| | A	src_galaxy_branch/libshogun/lib/__init__.py
| | A	src_galaxy_branch/libshogun/lib/common.h
| | A	src_galaxy_branch/libshogun/lib/io.cpp
| | A	src_galaxy_branch/libshogun/lib/io.h
| | A	src_galaxy_branch/libshogun/lib/lapack.cpp
| | A	src_galaxy_branch/libshogun/lib/lapack.h
| | A	src_galaxy_branch/libshogun/lib/memory.cpp
| | A	src_galaxy_branch/libshogun/lib/memory.h
| | A	src_galaxy_branch/libshogun/preproc/LogPlusOne.cpp
| | A	src_galaxy_branch/libshogun/preproc/LogPlusOne.h
| | A	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.cpp
| | A	src_galaxy_branch/libshogun/preproc/NormDerivativeLem3.h
| | A	src_galaxy_branch/libshogun/preproc/NormOne.cpp
| | A	src_galaxy_branch/libshogun/preproc/NormOne.h
| | A	src_galaxy_branch/libshogun/preproc/PCACut.cpp
| | A	src_galaxy_branch/libshogun/preproc/PCACut.h
| | A	src_galaxy_branch/libshogun/preproc/PreProc.cpp
| | A	src_galaxy_branch/libshogun/preproc/PreProc.h
| | A	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.cpp
| | A	src_galaxy_branch/libshogun/preproc/PruneVarSubMean.h
| | A	src_galaxy_branch/libshogun/preproc/SimplePreProc.h
| | A	src_galaxy_branch/libshogun/preproc/SortUlongString.cpp
| | A	src_galaxy_branch/libshogun/preproc/SortUlongString.h
| | A	src_galaxy_branch/libshogun/preproc/SortWordString.cpp
| | A	src_galaxy_branch/libshogun/preproc/SortWordString.h
| | A	src_galaxy_branch/libshogun/preproc/SparsePreProc.h
| | A	src_galaxy_branch/libshogun/preproc/StringPreProc.h
| | A	src_galaxy_branch/libshogun/regression/KRR.cpp
| | A	src_galaxy_branch/libshogun/regression/KRR.h
| | A	src_galaxy_branch/libshogun/regression/Regression.h
| | A	src_galaxy_branch/libshogun/regression/svr/LibSVR.cpp
| | A	src_galaxy_branch/libshogun/regression/svr/LibSVR.h
| | A	src_galaxy_branch/libshogun/regression/svr/SVR_light.cpp
| | A	src_galaxy_branch/libshogun/regression/svr/SVR_light.h
| | A	src_galaxy_branch/libshogun/structure/DynProg.cpp
| | A	src_galaxy_branch/libshogun/structure/DynProg.h
| | A	src_galaxy_branch/libshogun/structure/Plif.cpp
| | A	src_galaxy_branch/libshogun/structure/Plif.h
| | A	src_galaxy_branch/libshogun/structure/PlifArray.cpp
| | A	src_galaxy_branch/libshogun/structure/PlifArray.h
| | A	src_galaxy_branch/libshogun/structure/PlifBase.h
| | A	src_galaxy_branch/libshogunui/GUIClassifier.cpp
| | A	src_galaxy_branch/libshogunui/GUIClassifier.h
| | A	src_galaxy_branch/libshogunui/GUICommands.h
| | A	src_galaxy_branch/libshogunui/GUIDistance.cpp
| | A	src_galaxy_branch/libshogunui/GUIDistance.h
| | A	src_galaxy_branch/libshogunui/GUIFeatures.cpp
| | A	src_galaxy_branch/libshogunui/GUIFeatures.h
| | A	src_galaxy_branch/libshogunui/GUIHMM.cpp
| | A	src_galaxy_branch/libshogunui/GUIHMM.h
| | A	src_galaxy_branch/libshogunui/GUIKernel.cpp
| | A	src_galaxy_branch/libshogunui/GUIKernel.h
| | A	src_galaxy_branch/libshogunui/GUILabels.cpp
| | A	src_galaxy_branch/libshogunui/GUILabels.h
| | A	src_galaxy_branch/libshogunui/GUIMath.cpp
| | A	src_galaxy_branch/libshogunui/GUIMath.h
| | A	src_galaxy_branch/libshogunui/GUIPluginEstimate.cpp
| | A	src_galaxy_branch/libshogunui/GUIPluginEstimate.h
| | A	src_galaxy_branch/libshogunui/GUIPreProc.cpp
| | A	src_galaxy_branch/libshogunui/GUIPreProc.h
| | A	src_galaxy_branch/libshogunui/GUIStructure.cpp
| | A	src_galaxy_branch/libshogunui/GUIStructure.h
| | A	src_galaxy_branch/libshogunui/GUITime.cpp
| | A	src_galaxy_branch/libshogunui/GUITime.h
| | A	src_galaxy_branch/libshogunui/SGInterface.cpp
| | A	src_galaxy_branch/libshogunui/SGInterface.h
| | A	src_galaxy_branch/libshogunui/SyntaxHighLight.h
| | A	src_galaxy_branch/matlab/MatlabInterface.cpp
| | A	src_galaxy_branch/matlab/MatlabInterface.h
| | A	src_galaxy_branch/modular/Classifier.doxy
| | A	src_galaxy_branch/modular/Classifier.i
| | A	src_galaxy_branch/modular/Clustering.doxy
| | A	src_galaxy_branch/modular/Clustering.i
| | A	src_galaxy_branch/modular/Distance.doxy
| | A	src_galaxy_branch/modular/Distance.i
| | A	src_galaxy_branch/modular/Distribution.doxy
| | A	src_galaxy_branch/modular/Distribution.i
| | A	src_galaxy_branch/modular/Evaluation.doxy
| | A	src_galaxy_branch/modular/Evaluation.i
| | A	src_galaxy_branch/modular/Features.doxy
| | A	src_galaxy_branch/modular/Features.i
| | A	src_galaxy_branch/modular/Kernel.doxy
| | A	src_galaxy_branch/modular/Kernel.i
| | A	src_galaxy_branch/modular/Library.doxy
| | A	src_galaxy_branch/modular/Library.i
| | A	src_galaxy_branch/modular/PreProc.doxy
| | A	src_galaxy_branch/modular/PreProc.i
| | A	src_galaxy_branch/modular/Regression.doxy
| | A	src_galaxy_branch/modular/Regression.i
| | A	src_galaxy_branch/modular/SGBase.i
| | A	src_galaxy_branch/modular/Structure.doxy
| | A	src_galaxy_branch/modular/Structure.i
| | A	src_galaxy_branch/octave/OctaveInterface.cpp
| | A	src_galaxy_branch/octave/OctaveInterface.h
| | A	src_galaxy_branch/octave_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/octave_modular/swig_typemaps.i
| | A	src_galaxy_branch/python/PythonInterface.cpp
| | A	src_galaxy_branch/python/PythonInterface.h
| | A	src_galaxy_branch/python_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/python_modular/swig_typemaps.i
| | A	src_galaxy_branch/r/RInterface.cpp
| | A	src_galaxy_branch/r/RInterface.h
| | A	src_galaxy_branch/r_modular/sg_print_functions.cpp
| | A	src_galaxy_branch/r_modular/swig_typemaps.i
| |   
* | commit fc6b557f1e4001aa8d05b935e5684d96cdd16324
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 14 05:18:03 2009 +0000
| | 
| |     add memorymapped file
| | 
| | M	src/modular/Library.i
| |   
* | commit 2eb2000c8f3cf24f71fbd3a2ef50ba3bbdad025a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 8 09:48:43 2009 +0000
| | 
| |     broken, but compiles at least
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit e4f34aa7954445c41c6f58e3cc16338c67708914
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 8 07:28:07 2009 +0000
| | 
| |     further restructuring
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| |   
* | commit f72386f3d6c6717bf82190f3984f973c7e1e696b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 12:11:33 2009 +0000
| | 
| |     work in progress
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogun/classifier/svm/MKLClassification.cpp
| | M	src/libshogun/classifier/svm/MKLClassification.h
| |   
* | commit 61b805b64badda1a27b1479af1a6b86b4320c290
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 6 09:07:44 2009 +0000
| | 
| |     suppress error on configure
| | 
| | M	src/configure
| |   
* | commit b13f6612cc469219bb2fdd4561dacf36ecb95fd2
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 20:39:12 2009 +0000
| | 
| |     back to broken
| | 
| | M	src/libshogun/classifier/svm/MKL.cpp
| | A	src/libshogun/classifier/svm/MKLClassification.cpp
| |   
* | commit 657f877bd39e034ca98fcec5468e7ba8eb8bd424
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 13:39:12 2009 +0000
| | 
| |     fix for one class nu svm, thanks to motoaki kawanabe
| | 
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit b327e82508ebb3ddd9065984fecc2938ce82ed3b
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 13:22:34 2009 +0000
| | 
| |     get things back to compile
| | 
| | M	src/NEWS
| | M	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | M	src/libshogunui/GUIClassifier.cpp
| |   
* | commit 33a5fbc5104e0aca6e28517c55431d8e1f6b4f72
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 09:54:33 2009 +0000
| | 
| |     start cleaning up the MKL mess(tm), DON'T CURRENTLY USE
| | 
| | A	src/libshogun/classifier/svm/MKL.cpp
| | M	src/libshogun/classifier/svm/MKL.h
| | A	src/libshogun/classifier/svm/MKLClassification.h
| | A	src/libshogun/classifier/svm/MKLMulticlass.h
| | A	src/libshogun/classifier/svm/MKLRegression.cpp
| | A	src/libshogun/classifier/svm/MKLRegression.h
| | M	src/libshogun/classifier/svm/SVM.cpp
| | M	src/libshogun/classifier/svm/SVM.h
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| | M	src/libshogun/classifier/svm/SVM_light.h
| | M	src/libshogun/regression/svr/SVR_light.cpp
| | M	src/libshogun/regression/svr/SVR_light.h
| |   
* | commit ca835378fd064f34e4be44195ac6810b836cf231
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 5 07:40:00 2009 +0000
| | 
| |     start to work on generic MKL class
| | 
| | A	src/libshogun/classifier/svm/MKL.h
| |   
* | commit e1ac97081e1f86440e06fa17d1d4d3f5e9b7a1a2
| | Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| | Date:   Mon May 4 17:52:53 2009 +0000
| | 
| |     fixed a bug in MKL newton
| | 
| | M	src/libshogun/classifier/svm/SVM_light.cpp
| |   
* | commit f520d7825698afff3c2b5708e813c213e7ddeab1
|/  Author: Soeren Sonnenburg <sonne@debian.org>
|   Date:   Mon May 4 15:30:33 2009 +0000
|   
|       fix description
|   
|   M	src/libshogunui/SGInterface.cpp
|  
* commit 83c06d65702dec7ac6e92cc9f4763f666e85302e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:15:54 2009 +0000
| 
|     Preparing for new Release shogun_0.7.3
| 
| M	doc/Doxyfile
|  
* commit 453f1e2f41d77ed07e7f9fa7c80d22f428835257
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:07:08 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 9a301d4c82315110e715da4e16fa3c2c34cbed6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 20:05:47 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 6e54b38e4e2e657b0b4cff0e672f269b922c76f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:27:21 2009 +0000
| 
|     get some of the test to compile and actually run on OSX :)
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
|  
* commit 823b73b3503712aef151bb2ed05cb741c6ae0ab8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:00:43 2009 +0000
| 
|     don't fail when gnu sed is in path on osx
| 
| M	src/configure
|  
* commit f7d53a74678af6d6169e418c7f59275041fa8a14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 16:00:01 2009 +0000
| 
|     set include paths, libpaths to allow testing of libshogun examples in non standard dirs, add ldflags to allow custom
| 
| M	examples/libshogun/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit 0df5f4663290691f2e9a0b920824250d38177f81
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 15:01:35 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
|  
* commit 922cf2f157084714b409156be6bcf5abc754c110
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:47:07 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 3305ebaa601f0f1e4fad858d2345903997f87901
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:46:05 2009 +0000
| 
|     AUC kernel test is broken too
| 
| D	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| M	testsuite/octave_modular/util/set_kernel.m
|  
* commit 967d3cb652d9ed59c3d9990ad2d6b4e5f2f4ca51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:23:13 2009 +0000
| 
|     these tests are not correctly implemented - remove :(
| 
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
|  
* commit 55a27ce7d4c5db1a6b614a28f4163ebec1cc0e68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:15:10 2009 +0000
| 
|     update classifier tests
| 
| D	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_Linear.m
| D	testsuite/data/classifier/KNN_EuclidianDistance_3_1.m
| D	testsuite/data/classifier/LDA_01_1.m
| M	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_Linear.m
| M	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
|  
* commit 3dc86352d4ce9934c6df2fb3989d0d1c96acdd23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:14:11 2009 +0000
| 
|     add kernel tests
| 
| A	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| A	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| A	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_10_230.m
| A	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| A	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| A	testsuite/data/kernel/Gaussian_10_13.m
| A	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| A	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| A	testsuite/data/kernel/LinearString_DNA_60.m
| A	testsuite/data/kernel/LinearWord_fnord.m
| A	testsuite/data/kernel/Linear_fnord.m
| A	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| A	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| A	testsuite/data/kernel/OligoString_DNA_10_3_60_12.m
| A	testsuite/data/kernel/OligoString_DNA_10_4_60_17.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| A	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| A	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| A	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_FK.m
| A	testsuite/data/kernel/Poly_1_0_10_3_6_01_False_False_CUBE_1_TOP.m
| A	testsuite/data/kernel/Poly_3_10_False.m
| A	testsuite/data/kernel/Poly_3_10_True.m
| A	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| A	testsuite/data/kernel/Sigmoid_10_05_07.m
| A	testsuite/data/kernel/Sigmoid_10_11_13.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| A	testsuite/data/kernel/SparseGaussian_10_17.m
| A	testsuite/data/kernel/SparseLinear_fnord.m
| A	testsuite/data/kernel/SparsePoly_3_10_False.m
| A	testsuite/data/kernel/SparsePoly_3_10_True.m
| A	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| A	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| A	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| A	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
|  
* commit c944e153a2c1b3de233dd23b7504dde1a315596a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:13:32 2009 +0000
| 
|     remove kernels
| 
| D	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_True_3_10_3_LocalAlignmentString_60_FixedDegreeString_10_60_PolyMatchString_DNA_10_DNA_DNA_60.m
| D	testsuite/data/kernel/CommUlongString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/CommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_10_230.m
| D	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_3_DNA_10_60.m
| D	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| D	testsuite/data/kernel/Gaussian_10_13.m
| D	testsuite/data/kernel/HistogramWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/LinearByte_RAWBYTE_60.m
| D	testsuite/data/kernel/LinearString_DNA_60.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_fnord.m
| D	testsuite/data/kernel/LocalAlignmentString_DNA_10_60.m
| D	testsuite/data/kernel/MatchWordString_3_DNA_10_0_3_60_False.m
| D	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| D	testsuite/data/kernel/Oligo_DNA_10_4_60_17.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_False.m
| D	testsuite/data/kernel/PolyMatchString_3_DNA_10_60_True.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_False_False.m
| D	testsuite/data/kernel/PolyMatchWordString_3_DNA_10_0_3_60_True_False.m
| D	testsuite/data/kernel/Poly_1_0_10_3_FK_6_01_False_False_CUBE_1.m
| D	testsuite/data/kernel/Poly_1_0_10_3_TOP_6_01_False_False_CUBE_1.m
| D	testsuite/data/kernel/Poly_3_10_False.m
| D	testsuite/data/kernel/Poly_3_10_True.m
| D	testsuite/data/kernel/SalzbergWordString_DNA_0_3_60_False.m
| D	testsuite/data/kernel/Sigmoid_10_05_07.m
| D	testsuite/data/kernel/Sigmoid_10_11_13.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_DNA_10_5_60_5_7.m
| D	testsuite/data/kernel/SparseGaussian_10_17.m
| D	testsuite/data/kernel/SparseLinear_fnord.m
| D	testsuite/data/kernel/SparsePoly_3_10_False.m
| D	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/WeightedCommWordString_DNA_10_0_False_3_60_False.m
| D	testsuite/data/kernel/WeightedDegreePositionString_1_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreePositionString_20_DNA_10_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_1_60.m
| D	testsuite/data/kernel/WeightedDegreeString_DNA_20_60.m
| M	testsuite/generator/featop.py
|  
* commit 53366d03aff9812e004a6a619fbb5e9efecf40a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:08:10 2009 +0000
| 
|     prefix make tests with LD_LIBRARY_PATH
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit fb19ecc654fdcda1aa7d460f772d9732a2057e7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:07:37 2009 +0000
| 
|     Oligo kernel is now named OligoString
| 
| M	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| M	testsuite/generator/kernel.py
|  
* commit 672af99e14ebf87593085161ef9d747e4873cb41
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 14:06:35 2009 +0000
| 
|     update examples
| 
| M	examples/libshogun/Makefile
| M	examples/octave_modular/all_kernels.m
| M	examples/python/test_mkl.py
|  
* commit 8488f0a4f5335c16bd386a52b376b0631a704424
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:16:40 2009 +0000
| 
|     fix docu
| 
| M	src/libshogun/lib/GCArray.h
|  
* commit 585282cdb442712d0f2f69e81b74842a1f160153
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:07:51 2009 +0000
| 
|     workaround broke compilation here :(
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 4c372d816e4561b62111a30582facf03e5fd0e06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 13:01:00 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 18328cd40344cae42afe8fcd15020d3c545bd3ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 12:59:46 2009 +0000
| 
|     new release tomorrow if things build under osx with this workaround
| 
| M	src/NEWS
|  
* commit d036bee06d3c4831ef760ee5d20569ed4abd2433
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 2 06:04:26 2009 +0000
| 
|     it seems that we get clashes with the standard template library...
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 1c458057a970991e0ebb2a4bb7688fd5c703f7fa
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Fri May 1 11:55:00 2009 +0000
| 
|     Count the number of times beta is updated in MKL
| 
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit 600b6fcf3eb47abe7e0df88780c24ef44f6b6f6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 29 08:48:38 2009 +0000
| 
|     throw away operator overloading and use get + set and add an example. things compile now again.
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/gc_array.cpp
| M	src/libshogun/lib/GCArray.h
| M	src/modular/Library.i
|  
* commit 5e54ef623d5d0e2f5d438477bb54a8991b48ca4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 29 06:51:50 2009 +0000
| 
|     define is_infinity, is_nan, is_finite in CMath and make others use it, closer to compiling (GCArray still fails...)
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/ssl.cpp
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/GCArray.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/GUIStructure.cpp
|  
* commit fc2c072382b095594707a0c7dc46975d5e814021
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 15:03:24 2009 +0000
| 
|     put GCArray into .i file
| 
| M	src/modular/Library.i
|  
* commit 393d1b1654307141a31ad8040171b7134eeb4fa7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 14:58:27 2009 +0000
| 
|     remove erreaneously introduced plif functiosn
| 
| M	src/libshogun/structure/Plif.h
|  
* commit 91b563401e03589eb9774b60c9e394c729008756
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 28 14:55:41 2009 +0000
| 
|     - introduce garbage collecting array (GCArray)
|     - cleanup Plifs: never ever delete[] arrays in core functions. assume intial size (or size that is set using set_plif_length) is correct
| 
| A	src/libshogun/lib/GCArray.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogunui/GUIStructure.cpp
|  
* commit 54bb150e987b83ae4bb89797f19148be24d9ea42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 20:55:38 2009 +0000
| 
|     use isfinite everywhere as this is in the C99 standard
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit a10d126288be77186db8b3ead4285705684301ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 16:47:53 2009 +0000
| 
|     fix warnings on build dependencies for python modular on mac
| 
| M	src/Makefile.template
|  
* commit 6702ae7f4efb8ba09c4971a5ba930d9db0afe728
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 12:05:06 2009 +0000
| 
|     build fixes for osx
| 
| M	src/configure
|  
* commit 79ff2c5fdd0aea92f695ed1b33c7557e606d493f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 26 09:17:10 2009 +0000
| 
|     python extensions always have an .so suffix on *nix and darwin as well
| 
| M	src/configure
|  
* commit 8622e0df846c5ca318377c08d929a00ae888fb0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 23 06:09:33 2009 +0000
| 
|     use test data size when computing outputs in KNN
| 
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/distance/MinkowskiMetric.cpp
|  
* commit 64c7c2c3ac8fe2356ed7e65c4125ecbfb4750557
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Apr 21 19:58:06 2009 +0000
| 
|     minor modifications and some testcode.
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 477b403ad1ea3f3a388025b9fc030d12cb257a47
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Apr 21 19:06:33 2009 +0000
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 6c8de7779e0ded8c29d1ccd1f3a5e29516d7589f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 18 05:34:57 2009 +0000
| 
|     finally bitstring/indirect objects work together
| 
| M	examples/libshogun/indirect_object.cpp
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/IndirectObject.h
|  
* commit 912891a5cf4746cff18e45662b899a3d68bd1607
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 16 14:21:24 2009 +0000
| 
|     still debugging
| 
| M	src/libshogun/lib/BitString.h
|  
* commit 3335850b08ec3827967a79f897d332bfab871877
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 16 10:55:25 2009 +0000
| 
|     add example on how to access indirect objects
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/indirect_object.cpp
| M	src/libshogun/lib/BitString.h
|  
* commit bbc2c849b7ceff40a1ef5853986fd5dcc7fd57b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 14 08:53:24 2009 +0000
| 
|     declare static variable in header file
| 
| D	src/libshogun/lib/IndirectObject.cpp
| M	src/libshogun/lib/IndirectObject.h
|  
* commit 1b4d95037e5cb58e84cb942d0af56967ee7a215c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 20:23:35 2009 +0000
| 
|     apply nd-array typemap
| 
| M	src/modular/Structure.i
|  
* commit 6b199a60d416821c77f71834aaecd499bc2e3d45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 20:23:05 2009 +0000
| 
|     create an indirect object - allows for quicksort etc only modifying an index list
| 
| A	src/libshogun/lib/IndirectObject.cpp
| A	src/libshogun/lib/IndirectObject.h
|  
* commit ff5d27f0b451469c0a535cf1b046292faae1ae82
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 11:04:07 2009 +0000
| 
|     input typemap for N-dimensional python arrays
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit ffc362850fc5933e7b49a299e31663431f81b19f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 13 09:38:13 2009 +0000
| 
|     fix syntax errors in script
| 
| M	src/configure
|  
* commit e87a6223d205bf09635a32354f0bffab64a3d05e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 12 21:03:04 2009 +0000
| 
|     potential install fixes for OSX
| 
| M	src/.r-install.sh
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit e494bc439df63a24be905bd40171a967aedb9ad6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 11 09:59:17 2009 +0000
| 
|     improve tutorial
| 
| M	doc/pages/DeveloperTutorial.mainpage
| M	examples/libshogun/Makefile
| A	examples/libshogun/rbf_kernel.cpp
| A	examples/libshogun/revlin_kernel.cpp
| M	src/NEWS
|  
* commit 80d5dda3368f17543d0b8e7f60d364a4b7023494
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 10 18:35:28 2009 +0000
| 
|     use -funroll-loops and CMath::{max,min,abs}
| 
| M	src/configure
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas_common.h
| M	src/libshogun/classifier/svm/qpssvmlib.cpp
|  
* commit f69a19ff30c1f76d9a272b9c796dc3f6d75c166c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 10 05:29:31 2009 +0000
| 
|     move displaybits to lib/Mathematics, further work on bitstring
| 
| M	src/libshogun/lib/BitString.h
| M	src/libshogun/lib/DynInt.h
| M	src/libshogun/lib/Mathematics.h
|  
* commit 18d3135b2abc08852fdbedcb8484182c9d07a8b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 8 18:58:52 2009 +0000
| 
|     compile fixes for darwin
| 
| M	src/configure
| M	src/libshogun/lib/lapack.cpp
|  
* commit c806d290df260384f532576d4ac295d78f77dd44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 8 09:20:27 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit eb2d4c7a9972775f00d2c8ed8d8a8127be7ebcbc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Apr 8 06:34:27 2009 +0000
| 
|     more memleaks fixed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 3a1babea9e988e0188f8abe8f4b401b52ab07ab7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Apr 8 06:03:24 2009 +0000
| 
|     fixed some memory leaks
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit e0dd34f02fdfe7d104e3dc2c1fc21fa298c619f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 7 22:22:30 2009 +0000
| 
|     compile fixes for modular interfaces
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit a5a007b2c606354d2263734ca778d0fc62b46d11
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 5 18:28:03 2009 +0000
| 
|     don't set -undefined error on OSX as this conflicts with R and other builds
| 
| M	src/configure
|  
* commit ce0f6e9a78e4ee69841ce0afc93ff0340991711e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 5 18:25:41 2009 +0000
| 
|     add bitstring to efficiently represent huge strings
| 
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/BitString.h
|  
* commit f510d7211e7b0fe745c62bc144993a45060fe935
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 3 07:04:54 2009 +0000
| 
|     provide function to translate embedded bits back to string
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit c3e4a41214c6c8ca21924c03249ba7ee0be16815
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 22:33:08 2009 +0000
| 
|     speed up embedding
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit a40161ec48039e69b86e3bfbbeee9ffe14b9aeef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 20:52:13 2009 +0000
| 
|     add inplace remapping for fastq files
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit f9dec98675dc93a613984a300273b02cf56123ef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 2 16:38:03 2009 +0000
| 
|     fix bitshift ops
| 
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/DynInt.h
|  
* commit e129585066e818aa821b0d1442e3e4acf3758395
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 21:18:57 2009 +0000
| 
|     time outputs should use SG_PRINT
| 
| M	src/libshogun/lib/Time.cpp
|  
* commit 149b13ac7a24cebfb2d91a696e5c6e4fe52d47e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 20:52:12 2009 +0000
| 
|     add an example on how to use dyn ints
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/dyn_int.cpp
|  
* commit 192441666e5cb87f6e9176eba4121da0f28ef0e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 18:18:58 2009 +0000
| 
|     add dynamic size integers and support for them in stringfeatures/alphabet
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/DynInt.h
|  
* commit cec9178cab4354e607e3d8dd8c128b59aedb17f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 09:45:39 2009 +0000
| 
|     fast fasta file reading
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit ff407ebca4096336d06dd5959798b573f7bebaf3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 1 08:12:30 2009 +0000
| 
|     fast reading of fastq files
| 
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/StringFeatures.h
| A	src/libshogun/lib/MemoryMappedFile.h
| M	src/libshogun/lib/SimpleFile.h
|  
* commit c98eea53d46241481ee68c0465029791fb21548f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 31 13:47:21 2009 +0000
| 
|     show detailed class description on top
| 
| M	doc/DoxygenLayout.xml
|  
* commit 08656a7272afe2abcb2a407dc0a72250ff3e88ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 31 12:59:57 2009 +0000
| 
|     always use the central element as pivot element. it speeds up things when the array is already sorted.
| 
| M	src/NEWS
| M	src/libshogun/lib/Mathematics.h
|  
* commit d08347c5f39bf08f277f76734ae7dff31bd82396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 30 23:02:06 2009 +0000
| 
|     - speed up qsort by factor of 2
|     - also provide convenience function for parallel qsort, to be called like CMath::parallel_qsort_index<uint64_t>(a, b, LEN, num_threads), gets quite some further speedup here
| 
| M	src/libshogun/lib/Mathematics.h
|  
* commit 13cd359e15cac38220148d10f8f678c7386e54fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 27 16:49:37 2009 +0000
| 
|     - Make sure that all destructors are declared virtual.
|     - get_name function was undefined in Evaluation causing the PerformanceMeasures class to be defunct.
| 
| M	src/NEWS
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/MindyGramFeatures.h
| M	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.h
| M	src/modular/Evaluation.i
|  
* commit 851a98448b286e2932d2872778d3364b4865c03f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 09:00:05 2009 +0000
| 
|     call website update script on make update-webpage
| 
| M	Makefile
|  
* commit d5a48d328b4568955d290043ffaf913ca615df74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 06:10:56 2009 +0000
| 
|     Preparing for new Release shogun_0.7.2
| 
| M	doc/Doxyfile
|  
* commit 0d14ef6511d382d15416aba40cc0ef4e6d3709b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 06:07:20 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 509b686cc57eed38c8609197775c1277a2fb5766
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 23 05:51:46 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/NEWS
|  
* commit 79cfc70ef14dbc01e8b7dd140a9cb24e538fdd52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 22:09:47 2009 +0000
| 
|     long double can be 96 or 128 bits so name it floatmax_t
| 
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/common.h
| M	src/modular/Features.i
| M	src/python_modular/swig_typemaps.i
|  
* commit a5e291fd667035297ef4136e1743202f97fb35f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 21:17:40 2009 +0000
| 
|     fix typo (, in url)
| 
| M	doc/pages/Installation.mainpage
|  
* commit 0f48328c1dcc6ea54931ee4dfc866e1c2d885177
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 20:20:12 2009 +0000
| 
|     fix norm printing
| 
| M	src/libshogunui/GUIClassifier.cpp
|  
* commit ff3e6ea7d65f2dedcc239e29389c7d7c39f0dd9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 22 17:01:09 2009 +0000
| 
|     - Support all data types from python_modular: dense, scipy-sparse
|     csc_sparse matrices and strings of type bool, char, (u)int{8,16,32,64},
|     float{32,64,96}. In addition, individual vectors/strings can now be
|     obtained and even changed.  See examples/python_modular/features_*.py
|     for examples.
|     - AUC maximization now works with arbitrary kernel SVMs.
|     - Documentation updates, many examples have been polished.
|     - Slightly speedup Oligo kernel.
|     - Fix reading strings from directory (f.load_from_directory()).
|     - Update copyright to 2009.
|     - Remove {Char,Short,Word,Int,Real}Features and only ever use the
|     templated SimpleFeatures.
|     - Split up examples in examples/python_modular to separate files.
|     - Now use s.set_features(strs) instead of s.set_string_features(strs)
|     to set string features.
|     - The meaning of the width parameter for the Oligo Kernel changed, the
|     OligoKernel has been renamed to OligoStringKernel.
| 
| M	doc/Doxyfile
| M	doc/DoxygenLayout.xml
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Methods.mainpage
| M	examples/libshogun/minimal_svm.cpp
| M	examples/libshogun/rbf_svm.cpp
| M	examples/octave_modular/all_classifier.m
| M	examples/octave_modular/all_distance.m
| M	examples/octave_modular/all_distribution.m
| M	examples/octave_modular/all_kernels.m
| M	examples/octave_modular/all_preproc.m
| M	examples/python_modular/all_classifier.py
| D	examples/python_modular/all_clustering.py
| M	examples/python_modular/all_distance.py
| D	examples/python_modular/all_distribution.py
| D	examples/python_modular/all_kernels.py
| M	examples/python_modular/all_preproc.py
| M	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/clustering_hierarchical.py
| A	examples/python_modular/clustering_kmeans.py
| A	examples/python_modular/distribution_histogram.py
| A	examples/python_modular/distribution_hmm.py
| A	examples/python_modular/distribution_linear_hmm.py
| A	examples/python_modular/features_simple.py
| A	examples/python_modular/features_simple_byte.py
| A	examples/python_modular/features_simple_longint.py
| A	examples/python_modular/features_simple_real.py
| A	examples/python_modular/features_sparse.py
| A	examples/python_modular/features_string_char.py
| A	examples/python_modular/features_string_file.py
| A	examples/python_modular/features_string_sliding_window.py
| A	examples/python_modular/features_string_ulong.py
| A	examples/python_modular/features_string_word.py
| A	examples/python_modular/kernel_auc.py
| A	examples/python_modular/kernel_chi2.py
| A	examples/python_modular/kernel_combined.py
| A	examples/python_modular/kernel_comm_ulong_string.py
| A	examples/python_modular/kernel_comm_word_string.py
| A	examples/python_modular/kernel_const.py
| A	examples/python_modular/kernel_custom.py
| A	examples/python_modular/kernel_diag.py
| A	examples/python_modular/kernel_distance.py
| A	examples/python_modular/kernel_fisher.py
| A	examples/python_modular/kernel_fixed_degree_string.py
| A	examples/python_modular/kernel_gaussian.py
| A	examples/python_modular/kernel_gaussian_shift.py
| A	examples/python_modular/kernel_histogram_word_string.py
| A	examples/python_modular/kernel_linear.py
| A	examples/python_modular/kernel_linear_byte.py
| A	examples/python_modular/kernel_linear_string.py
| A	examples/python_modular/kernel_linear_word.py
| A	examples/python_modular/kernel_local_alignment_string.py
| A	examples/python_modular/kernel_locality_improved_string.py
| A	examples/python_modular/kernel_match_word_string.py
| A	examples/python_modular/kernel_oligo_string.py
| A	examples/python_modular/kernel_poly.py
| A	examples/python_modular/kernel_poly_match_string.py
| A	examples/python_modular/kernel_poly_match_word_string.py
| A	examples/python_modular/kernel_salzberg_word_string.py
| A	examples/python_modular/kernel_sigmoid.py
| A	examples/python_modular/kernel_simple_locality_improved_string.py
| A	examples/python_modular/kernel_sparse_gaussian.py
| A	examples/python_modular/kernel_sparse_linear.py
| A	examples/python_modular/kernel_sparse_poly.py
| A	examples/python_modular/kernel_top.py
| A	examples/python_modular/kernel_weighted_comm_word_string.py
| A	examples/python_modular/kernel_weighted_degree_position_string.py
| A	examples/python_modular/kernel_weighted_degree_string.py
| D	examples/python_modular/stringfeatures.py
| M	src/.authors
| M	src/.r-install.sh
| M	src/AUTHORS
| M	src/NEWS
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.cpp
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelPerceptron.cpp
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.cpp
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.cpp
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.cpp
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.cpp
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.cpp
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/CPLEXSVM.cpp
| M	src/libshogun/classifier/svm/CPLEXSVM.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/GNPPSVM.h
| M	src/libshogun/classifier/svm/GPBTSVM.cpp
| M	src/libshogun/classifier/svm/GPBTSVM.h
| M	src/libshogun/classifier/svm/LibLinear.cpp
| M	src/libshogun/classifier/svm/LibLinear.h
| M	src/libshogun/classifier/svm/LibSVM.cpp
| M	src/libshogun/classifier/svm/LibSVM.h
| M	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| M	src/libshogun/classifier/svm/LibSVMMultiClass.h
| M	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| M	src/libshogun/classifier/svm/LibSVMOneClass.h
| M	src/libshogun/classifier/svm/MPDSVM.cpp
| M	src/libshogun/classifier/svm/MPDSVM.h
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.h
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/SVM.h
| M	src/libshogun/classifier/svm/SVMLin.cpp
| M	src/libshogun/classifier/svm/SVMLin.h
| M	src/libshogun/classifier/svm/SVMOcas.cpp
| M	src/libshogun/classifier/svm/SVMOcas.h
| M	src/libshogun/classifier/svm/SVMSGD.h
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/libshogun/classifier/svm/SVM_light.cpp
| M	src/libshogun/classifier/svm/SVM_light.h
| M	src/libshogun/classifier/svm/SVM_linear.cpp
| M	src/libshogun/classifier/svm/SVM_linear.h
| M	src/libshogun/classifier/svm/SubGradientSVM.cpp
| M	src/libshogun/classifier/svm/SubGradientSVM.h
| M	src/libshogun/classifier/svm/Tron.h
| M	src/libshogun/classifier/svm/WDSVMOcas.cpp
| M	src/libshogun/classifier/svm/WDSVMOcas.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/classifier/svm/gpdt.cpp
| M	src/libshogun/classifier/svm/gpdt.h
| M	src/libshogun/classifier/svm/gpdtsolve.cpp
| M	src/libshogun/classifier/svm/gpdtsolve.h
| M	src/libshogun/classifier/svm/libocas.cpp
| M	src/libshogun/classifier/svm/libocas.h
| M	src/libshogun/classifier/svm/pr_loqo.cpp
| M	src/libshogun/classifier/svm/pr_loqo.h
| M	src/libshogun/classifier/svm/qpbsvmlib.cpp
| M	src/libshogun/classifier/svm/qpbsvmlib.h
| M	src/libshogun/classifier/svm/ssl.h
| M	src/libshogun/clustering/Hierarchical.cpp
| M	src/libshogun/clustering/Hierarchical.h
| M	src/libshogun/clustering/KMeans.cpp
| M	src/libshogun/clustering/KMeans.h
| M	src/libshogun/distance/BrayCurtisDistance.cpp
| M	src/libshogun/distance/BrayCurtisDistance.h
| M	src/libshogun/distance/CanberraMetric.cpp
| M	src/libshogun/distance/CanberraMetric.h
| M	src/libshogun/distance/CanberraWordDistance.cpp
| M	src/libshogun/distance/CanberraWordDistance.h
| M	src/libshogun/distance/ChebyshewMetric.cpp
| M	src/libshogun/distance/ChebyshewMetric.h
| M	src/libshogun/distance/ChiSquareDistance.cpp
| M	src/libshogun/distance/ChiSquareDistance.h
| M	src/libshogun/distance/CosineDistance.cpp
| M	src/libshogun/distance/CosineDistance.h
| M	src/libshogun/distance/Distance.cpp
| M	src/libshogun/distance/Distance.h
| M	src/libshogun/distance/DistanceMachine.cpp
| M	src/libshogun/distance/DistanceMachine.h
| M	src/libshogun/distance/EuclidianDistance.cpp
| M	src/libshogun/distance/EuclidianDistance.h
| M	src/libshogun/distance/GeodesicMetric.cpp
| M	src/libshogun/distance/GeodesicMetric.h
| M	src/libshogun/distance/HammingWordDistance.cpp
| M	src/libshogun/distance/HammingWordDistance.h
| M	src/libshogun/distance/JensenMetric.cpp
| M	src/libshogun/distance/JensenMetric.h
| M	src/libshogun/distance/ManhattanMetric.cpp
| M	src/libshogun/distance/ManhattanMetric.h
| M	src/libshogun/distance/ManhattanWordDistance.cpp
| M	src/libshogun/distance/ManhattanWordDistance.h
| M	src/libshogun/distance/MinkowskiMetric.cpp
| M	src/libshogun/distance/MinkowskiMetric.h
| M	src/libshogun/distance/RealDistance.h
| M	src/libshogun/distance/SimpleDistance.h
| M	src/libshogun/distance/SparseDistance.h
| M	src/libshogun/distance/SparseEuclidianDistance.cpp
| M	src/libshogun/distance/SparseEuclidianDistance.h
| M	src/libshogun/distance/StringDistance.h
| M	src/libshogun/distance/TanimotoDistance.cpp
| M	src/libshogun/distance/TanimotoDistance.h
| M	src/libshogun/distributions/Distribution.cpp
| M	src/libshogun/distributions/Distribution.h
| M	src/libshogun/distributions/histogram/Histogram.cpp
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/distributions/hmm/GHMM.cpp
| M	src/libshogun/distributions/hmm/GHMM.h
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/distributions/hmm/LinearHMM.cpp
| M	src/libshogun/distributions/hmm/LinearHMM.h
| M	src/libshogun/evaluation/PerformanceMeasures.cpp
| M	src/libshogun/evaluation/PerformanceMeasures.h
| M	src/libshogun/features/Alphabet.cpp
| M	src/libshogun/features/Alphabet.h
| M	src/libshogun/features/AttributeFeatures.h
| D	src/libshogun/features/ByteFeatures.cpp
| D	src/libshogun/features/ByteFeatures.h
| D	src/libshogun/features/CharFeatures.cpp
| D	src/libshogun/features/CharFeatures.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/features/DotFeatures.cpp
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/DummyFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/FKFeatures.cpp
| M	src/libshogun/features/FKFeatures.h
| M	src/libshogun/features/Features.cpp
| M	src/libshogun/features/Features.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| D	src/libshogun/features/IntFeatures.cpp
| D	src/libshogun/features/IntFeatures.h
| M	src/libshogun/features/Labels.cpp
| M	src/libshogun/features/Labels.h
| M	src/libshogun/features/MindyGramFeatures.cpp
| M	src/libshogun/features/MindyGramFeatures.h
| D	src/libshogun/features/RealFeatures.cpp
| D	src/libshogun/features/RealFeatures.h
| M	src/libshogun/features/RealFileFeatures.cpp
| M	src/libshogun/features/RealFileFeatures.h
| D	src/libshogun/features/ShortFeatures.cpp
| D	src/libshogun/features/ShortFeatures.h
| D	src/libshogun/features/ShortRealFeatures.cpp
| D	src/libshogun/features/ShortRealFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/SparseFeatures.h
| D	src/libshogun/features/StringFeatures.cpp
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/features/TOPFeatures.cpp
| M	src/libshogun/features/TOPFeatures.h
| M	src/libshogun/features/WDFeatures.h
| D	src/libshogun/features/WordFeatures.cpp
| D	src/libshogun/features/WordFeatures.h
| M	src/libshogun/kernel/AUCKernel.cpp
| M	src/libshogun/kernel/AUCKernel.h
| M	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| M	src/libshogun/kernel/Chi2Kernel.cpp
| M	src/libshogun/kernel/Chi2Kernel.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommUlongStringKernel.cpp
| M	src/libshogun/kernel/CommUlongStringKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/ConstKernel.cpp
| M	src/libshogun/kernel/ConstKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/DiagKernel.cpp
| M	src/libshogun/kernel/DiagKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/DistanceKernel.cpp
| M	src/libshogun/kernel/DistanceKernel.h
| M	src/libshogun/kernel/FirstElementKernelNormalizer.h
| M	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| M	src/libshogun/kernel/FixedDegreeStringKernel.h
| M	src/libshogun/kernel/GaussianKernel.cpp
| M	src/libshogun/kernel/GaussianKernel.h
| M	src/libshogun/kernel/GaussianShiftKernel.cpp
| M	src/libshogun/kernel/GaussianShiftKernel.h
| M	src/libshogun/kernel/GaussianShortRealKernel.cpp
| M	src/libshogun/kernel/GaussianShortRealKernel.h
| M	src/libshogun/kernel/HistogramWordStringKernel.cpp
| M	src/libshogun/kernel/HistogramWordStringKernel.h
| M	src/libshogun/kernel/IdentityKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/kernel/KernelNormalizer.h
| M	src/libshogun/kernel/LinearByteKernel.cpp
| M	src/libshogun/kernel/LinearByteKernel.h
| M	src/libshogun/kernel/LinearKernel.cpp
| M	src/libshogun/kernel/LinearKernel.h
| M	src/libshogun/kernel/LinearStringKernel.cpp
| M	src/libshogun/kernel/LinearStringKernel.h
| M	src/libshogun/kernel/LinearWordKernel.cpp
| M	src/libshogun/kernel/LinearWordKernel.h
| M	src/libshogun/kernel/LocalAlignmentStringKernel.h
| M	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/LocalityImprovedStringKernel.h
| M	src/libshogun/kernel/MatchWordStringKernel.cpp
| M	src/libshogun/kernel/MatchWordStringKernel.h
| M	src/libshogun/kernel/MindyGramKernel.cpp
| M	src/libshogun/kernel/MindyGramKernel.h
| D	src/libshogun/kernel/OligoKernel.cpp
| D	src/libshogun/kernel/OligoKernel.h
| A	src/libshogun/kernel/OligoStringKernel.cpp
| A	src/libshogun/kernel/OligoStringKernel.h
| M	src/libshogun/kernel/PolyKernel.cpp
| M	src/libshogun/kernel/PolyKernel.h
| M	src/libshogun/kernel/PolyMatchStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchStringKernel.h
| M	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| M	src/libshogun/kernel/PolyMatchWordStringKernel.h
| M	src/libshogun/kernel/PyramidChi2.cpp
| M	src/libshogun/kernel/PyramidChi2.h
| M	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| M	src/libshogun/kernel/SalzbergWordStringKernel.h
| M	src/libshogun/kernel/SigmoidKernel.cpp
| M	src/libshogun/kernel/SigmoidKernel.h
| M	src/libshogun/kernel/SimpleKernel.h
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/libshogun/kernel/SparseGaussianKernel.cpp
| M	src/libshogun/kernel/SparseGaussianKernel.h
| M	src/libshogun/kernel/SparseKernel.h
| M	src/libshogun/kernel/SparseLinearKernel.cpp
| M	src/libshogun/kernel/SparseLinearKernel.h
| M	src/libshogun/kernel/SparsePolyKernel.cpp
| M	src/libshogun/kernel/SparsePolyKernel.h
| M	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| M	src/libshogun/kernel/StringKernel.h
| M	src/libshogun/kernel/TanimotoKernelNormalizer.h
| M	src/libshogun/kernel/TensorProductPairKernel.cpp
| M	src/libshogun/kernel/TensorProductPairKernel.h
| M	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| M	src/libshogun/kernel/WeightedCommWordStringKernel.h
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| M	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| M	src/libshogun/kernel/WeightedDegreeStringKernel.h
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/common.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/preproc/LogPlusOne.cpp
| M	src/libshogun/preproc/LogPlusOne.h
| M	src/libshogun/preproc/NormDerivativeLem3.cpp
| M	src/libshogun/preproc/NormDerivativeLem3.h
| M	src/libshogun/preproc/NormOne.cpp
| M	src/libshogun/preproc/NormOne.h
| M	src/libshogun/preproc/PCACut.cpp
| M	src/libshogun/preproc/PCACut.h
| M	src/libshogun/preproc/PreProc.cpp
| M	src/libshogun/preproc/PreProc.h
| M	src/libshogun/preproc/PruneVarSubMean.cpp
| M	src/libshogun/preproc/PruneVarSubMean.h
| M	src/libshogun/preproc/SimplePreProc.h
| M	src/libshogun/preproc/SortUlongString.cpp
| M	src/libshogun/preproc/SortUlongString.h
| M	src/libshogun/preproc/SortWordString.cpp
| M	src/libshogun/preproc/SortWordString.h
| M	src/libshogun/preproc/SparsePreProc.h
| M	src/libshogun/preproc/StringPreProc.h
| M	src/libshogun/regression/KRR.cpp
| M	src/libshogun/regression/KRR.h
| M	src/libshogun/regression/Regression.h
| M	src/libshogun/regression/svr/LibSVR.cpp
| M	src/libshogun/regression/svr/LibSVR.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogun/regression/svr/SVR_light.h
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogun/structure/Plif.cpp
| M	src/libshogun/structure/Plif.h
| M	src/libshogun/structure/PlifArray.cpp
| M	src/libshogun/structure/PlifArray.h
| M	src/libshogun/structure/PlifBase.h
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	testsuite/octave_modular/util/set_features.m
| M	testsuite/octave_modular/util/set_pos_and_neg.m
| M	testsuite/python_modular/util.py
|  
* commit 467fdfff220a00bc146d2bbbec408c844132d3c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 11 08:41:53 2009 +0000
| 
|     equivalant logic transformation
| 
| M	src/libshogun/features/Labels.cpp
|  
* commit 65fce6905f08470ab2873fb2dae7ff5169eb1660
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 10 10:03:25 2009 +0000
| 
|     compile fixes / make installation path relative
| 
| A	src/.relpath.py
| M	src/Makefile.template
| M	src/modular/Classifier.i
|  
* commit 52b71976c44e3ff69991f3ca2cafb63d06d318e7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:12:57 2009 +0000
| 
|     Preparing for new Release shogun_0.7.1
| 
| M	doc/Doxyfile
|  
* commit 62fc2fe3fb2b331f85a3ceeb541afa26a0c1ba3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:12:41 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
|  
* commit 1ae680de5b0fab3b4ab82cc762c137907d8362d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 19:00:10 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 5ae0c11edaf0f7bdac6f3b5474c45194bcd5c817
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 18:47:16 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit ebb19a547bb587f9bac9b7bc513ddd44c28069e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 8 18:45:15 2009 +0000
| 
|     update documentation
| 
| M	doc/Doxyfile
| A	doc/DoxygenLayout.xml
| M	doc/pages/DeveloperTutorial.mainpage
| A	doc/pages/EierlegendeWollmilchSauInterface.mainpage
| M	doc/pages/Interfaces.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| A	examples/elwms/octave_matplotlib.m
| M	src/NEWS
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/classifier/KNN.h
| M	src/libshogun/classifier/KernelPerceptron.h
| M	src/libshogun/classifier/LDA.h
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/LinearClassifier.h
| M	src/libshogun/classifier/Perceptron.h
| M	src/libshogun/classifier/PluginEstimate.cpp
| M	src/libshogun/classifier/PluginEstimate.h
| M	src/libshogun/classifier/SubGradientLPM.h
| M	src/libshogun/classifier/svm/GMNPSVM.h
| M	src/libshogun/classifier/svm/gmnplib.h
| M	src/libshogun/classifier/svm/gmnpmkl.h
| M	src/libshogun/classifier/svm/gnpplib.h
| M	src/libshogun/distance/DistanceMachine.h
| M	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/kernel/KernelMachine.h
| M	src/libshogun/lib/Cplex.h
|  
* commit 53947f3dddd0dd8f007656615c3437094983e565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 5 21:40:08 2009 +0000
| 
|     whitespace code cleanup + docu
| 
| M	src/configure
| M	src/libshogun/base/SGObject.h
|  
* commit 97d9afc2492bd303016338089b612269389b8915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 5 21:02:03 2009 +0000
| 
|     add chris to authors and get python,... to R interface to work
| 
| A	examples/elwms/foo.R
| A	examples/elwms/octave_to_r.m
| M	src/.authors
| M	src/configure
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit cc678928c1c3925fd69aaf6ded009f1abe51235d
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 17:26:51 2009 +0000
| 
|     first piece of serialization support ported to a non-ancient version of shogun, default=off
| 
| M	src/configure
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/classifier/svm/SVM_libsvm.h
| M	src/r/RInterface.h
|  
* commit aa3a46dd68b2f0ead9b21d3ddea2ff34a4b159f9
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 17:01:10 2009 +0000
| 
|     checks for boost_serialization
| 
| M	src/configure
|  
* commit f49a3834033e01e0e4ecfeaf08b5845bca742df1
| Author: Christian Widmer <cwidmer@tuebingen.mpg.de>
| Date:   Thu Mar 5 15:56:02 2009 +0000
| 
| M	README
|  
* commit cf31247aa842ac05023d99531bb6a67c97d7b58e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 19:59:49 2009 +0000
| 
|     run octave embedded quietly
| 
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit 75ea280a62e119f446a4af718d79f747b2c028c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 19:53:28 2009 +0000
| 
|     make the example more fancy: plot a figure in python - matplotlib from within octave :-)
| 
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/python_to_octave.py
|  
* commit 4510b184e5b3b3a9a630fa4f6eebff7044abd6ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 07:03:00 2009 +0000
| 
|     x to octave now fully working for x in r,python and I guess even matlab
| 
| M	examples/elwms/python_to_octave.py
| A	examples/elwms/r_to_octave.m
| M	src/octave/OctaveInterface.cpp
|  
* commit 59e18de589f00d7cb3d24b8fcf05f4f43c0c90f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 06:19:30 2009 +0000
| 
|     make example comput. easier
| 
| M	examples/python_modular/custom_kernel.py
|  
* commit 0ec7a1412f2eba14b3c559bf7950e5a4fb2d60a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 4 06:10:40 2009 +0000
| 
|     fix orientation of strings
| 
| M	examples/octave_modular/tools/load_matrix.m
|  
* commit 652f82a2379b2e26aa7213f96b7e5bbeb9f63e62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 23:28:46 2009 +0000
| 
|     load strings as one string per line
| 
| M	examples/cmdline/all_classifier.sg
| M	examples/cmdline/all_kernels.sg
| M	examples/matlab_and_octave/tools/load_matrix.m
| M	examples/python/tools/load.py
| M	examples/r/all_kernels.R
| M	testsuite/test_configure.py
|  
* commit 923d7475bd2055c247cb485fb816344d964fb160
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:54 2009 +0000
| 
|     fix wrong data set sizes
| 
| M	examples/data/fm_test_dna.dat
| M	examples/data/fm_train_dna.dat
| M	examples/data/label_train_dna.dat
|  
* commit 4ce7bf377558b04850cdab9366ad4cbe64e44b27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:27 2009 +0000
| 
|     fix reading char matrices
| 
| M	examples/python_modular/tools/load.py
|  
* commit 99c0d4c6242e1226d3f37e9f74c068fd8f5aab95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 22:28:12 2009 +0000
| 
|     -fvirtual seems to break things
| 
| M	src/configure
| M	src/libshogun/features/RealFeatures.h
|  
* commit 46cd927805bf6c176df772ed938c5c60c2af4db2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 21:41:02 2009 +0000
| 
|     add function to get sub kernel weights and fix clash in exceptions by introducing a virtual functions as suggested in http://sourceforge.net/mailarchive/message.php?msg_name=48DF377F.2050407%40salilab.org
| 
| M	src/configure
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/modular/Kernel.i
|  
* commit 5148e2a8c85ad4247a1444e654b352b66d8f15a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 3 06:53:06 2009 +0000
| 
|     python,... to octave
| 
| M	examples/elwms/octave_to_python.m
| A	examples/elwms/python_to_octave.py
| M	examples/elwms/r_to_python.R
| M	src/Makefile.template
| M	src/configure
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 67ad179065d41e254444f5176aa41a9b0d36ade4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 2 09:23:26 2009 +0000
| 
|     implement dummy attribute struct hooks, fix examples
| 
| M	examples/python/test_mkl.py
| M	src/NEWS
| M	src/cmdline/CmdLineInterface.cpp
| M	src/cmdline/CmdLineInterface.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 6061a1b74846690ccbbe0c7dbf6754f303108c6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 2 09:18:51 2009 +0000
| 
|     fix bug in example
| 
| M	examples/libshogun/gnmpmkl.cpp
|  
* commit d9559c40370dc78f20f17d0acf9d9e8eb205fcc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 23:09:17 2009 +0000
| 
|     add attribute features
| 
| A	src/libshogun/features/AttributeFeatures.cpp
| A	src/libshogun/features/AttributeFeatures.h
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/lib/DynamicArray.h
| M	src/libshogunui/SGInterface.h
| M	src/modular/Features.i
|  
* commit 2babf413658da7b1a0b943770566be75b526ec78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:46:35 2009 +0000
| 
|     don't be verbose
| 
| M	examples/matlab_and_octave/liblinear.m
| M	examples/matlab_and_octave/lik_kernel.m
| M	examples/matlab_and_octave/markov_chain.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/svmocas.m
| M	examples/matlab_and_octave/svmsgd.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| M	examples/matlab_and_octave/tests/test_regression_linadd.m
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit 5097f04cff037a610dc0febcee3a734761ce11a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:46:21 2009 +0000
| 
|     fix a bug in get_kernel_matrix
| 
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 52c381434cd81efcd35f00561703dc54685faa8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 21:10:32 2009 +0000
| 
|     allow kernels with NULL as features
| 
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 5c7d3cf7e8dd3bdd7ed6be32bd41171ffefc7a08
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 20:47:53 2009 +0000
| 
|     disable elwms when interfaces are given
| 
| M	src/configure
|  
* commit 78c3a9ea3d0d29dafc5c3573e91ddd7f2a4771cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 20:43:55 2009 +0000
| 
|     fix error printing in matlab, combined kernel needs an init when custom features are used
| 
| M	src/libshogun/features/CombinedFeatures.cpp
| M	src/libshogun/features/CombinedFeatures.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/regression/svr/SVR_light.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/matlab/MatlabInterface.cpp
|  
* commit 7711f67ee9e30e89d0d14d86e23d03f3639e12d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 14:58:26 2009 +0000
| 
|     don't set verbosity in examples, fix compilation error in cmdline if and remove elwms Makefile
| 
| M	examples/matlab_and_octave/tests/test_classifier.m
| M	examples/matlab_and_octave/tests/test_combined.m
| M	examples/matlab_and_octave/tests/test_complex_scenario.m
| M	examples/matlab_and_octave/tests/test_custom_kernel.m
| M	examples/matlab_and_octave/tests/test_kernel_optimization.m
| M	examples/matlab_and_octave/tests/test_knn.m
| M	examples/matlab_and_octave/tests/test_l2svm.m
| M	examples/matlab_and_octave/tests/test_linadd.m
| M	examples/matlab_and_octave/tests/test_linear_methods.m
| M	examples/matlab_and_octave/tests/test_mkl.m
| M	examples/matlab_and_octave/tests/test_mkl_svr.m
| M	examples/matlab_and_octave/tests/test_one_class_svm.m
| M	examples/matlab_and_octave/tests/test_sliding_window.m
| M	examples/matlab_and_octave/tests/test_sparse.m
| M	examples/matlab_and_octave/tests/test_sparse_methods.m
| M	examples/matlab_and_octave/tests/test_subgradsvm.m
| M	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| M	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| M	examples/matlab_and_octave/tests/test_tppk.m
| M	examples/matlab_and_octave/tests/test_wd_kernel.m
| M	examples/matlab_and_octave/tests/test_wd_linadd.m
| M	examples/matlab_and_octave/tests/test_wdocas.m
| M	examples/matlab_and_octave/tests/test_wds_consensus.m
| M	examples/matlab_and_octave/tests/test_wds_kernel.m
| M	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| M	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| D	src/elwms/Makefile
|  
* commit ed28b89571c198debcd996f5d0b36a65ba37299f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 11:48:13 2009 +0000
| 
|     - rename elwms interface from sg to elwms (to avoid naming conflicts with other interfaces) and properly integrate it into ./configure and the standard install procedure
|     - update NEWS and INSTALL accordingly and support the whole spectrum of types from scalars to strings in translation
| 
| M	README
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/r_to_python.R
| M	src/.r-install.sh
| M	src/INSTALL
| M	src/Makefile.template
| M	src/NEWS
| M	src/configure
| M	src/elwms/Makefile
| M	src/elwms/elwms.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/features/StringFeatures.h
| M	src/libshogun/kernel/Kernel.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit a45744574437ee91f4123de7d3342a03b616e9e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 11:32:00 2009 +0000
| 
|     bugfix in example
| 
| M	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit db1ff7aeff68ec15fca47da4bc330cba62cf2ecf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:50:24 2009 +0000
| 
|     2008 -> 2009
| 
| M	src/libshogun/base/Version.h
|  
* commit 1336ff2fcebda55ddc07917b79eaecbc7858bd40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:29:40 2009 +0000
| 
|     also accept scalars as vec/matrix
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit 3ef61594fd4b9f19afbc42d2bd0ea0fd73674268
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 1 00:06:03 2009 +0000
| 
|     - don't actually print anything on SG_ERROR (as it throws an exception anyway - so only print the error then)
|     - fix a clash in R and octave error function (in elwms interface), also don't require result to be a dictionary, make it a tuple
| 
| M	examples/elwms/octave_to_python.m
| M	examples/elwms/r_to_python.R
| M	src/elwms/elwms.cpp
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit bbcfc777f958d1d4b19a79a94a6efd5d8b1096dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 10:18:08 2009 +0000
| 
|     dynamically load the python libs to global context
|     (since matlab/R don't load them automagically they fail due to missing
|      symbols), do at least try to get the python version right
| 
| M	src/configure
| M	src/elwms/Makefile
| M	src/matlab/MatlabInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit 1039160ccc0c891d79ad589887c38edb25b609d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 09:50:38 2009 +0000
| 
|     get the run_python command to work in r,octave and matlab, also release memory of converted matrices
| 
| M	src/elwms/Makefile
| M	src/elwms/elwms.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
|  
* commit 0df3afe6ac38b73eaddfb0dc605968100f331d6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 09:49:15 2009 +0000
| 
|     add example for R; example for matlab is the same as for octave
| 
| A	examples/elwms/r_to_python.R
|  
* commit 1f43d62e060bd5b23fa14132c76c057d33144a26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 28 07:12:29 2009 +0000
| 
|     octave to python translator now functional
| 
| A	examples/elwms/octave_to_python.m
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
|  
* commit fd88175afa61d786111123369c2187734f7d4416
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 23:27:31 2009 +0000
| 
|     add run_python command to the eierlegendewollmilchsau which will translate octave variables into python variables, execute python code and translate the variables back into octave *currently returning a matrix works*
| 
| M	src/NEWS
| M	src/elwms/Makefile
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit fea473f163015437038c0e1b467187a96f8ed603
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 21:09:23 2009 +0000
| 
|     - *taddaaa* I hereby proudly present THE EIERLEGENDEWOLLMILCHSAU (elwms), that is a *single file* that constitutes a interfaces to python, octave, R and matlab all at the same time - yes now one shoe^H^H^H^Hfile that fits all.
|     - minor warning fixes in interface, update NEWS
| 
| M	src/NEWS
| A	src/elwms/Makefile
| A	src/elwms/elwms.cpp
| M	src/libshogunui/SGInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit 3956712b8db6de67dbbb36dc13d9203dfe19eeed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 19:56:21 2009 +0000
| 
|     adjust example (simplified a lot!)
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/gnmpmkl.cpp
|  
* commit aa825379740e58ee7de761745d9fefdf61c66044
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 27 19:55:54 2009 +0000
| 
|     sole combined kernel based on custom kernels no longer requires features nor init
| 
| M	src/libshogun/classifier/Classifier.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CustomKernel.cpp
| M	src/libshogun/kernel/CustomKernel.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/kernel/KernelMachine.cpp
|  
* commit 28339a0a6c7a63065798f493cb90fae82387490d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 27 16:28:18 2009 +0000
| 
|     fixed compile errors in debug code
| 
| M	src/libshogun/structure/DynProg.cpp
|  
* commit 1b3d34d68f3d0c809eb8fdd333e8012ee13938c5
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:33 2009 +0000
| 
|     -- bugfix: precompute stop codons for precomp interface as well
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 4dbf549b3092eff83b342f52bb7ad7219c85fd99
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:31 2009 +0000
| 
|     - double declaration removed
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit eed3acf17a8330cbe10a538187ccdfa98ef79921
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 27 09:58:29 2009 +0000
| 
|     - some SG_PRINTs removed
|     - changed function init_content_svm_value_array such that all arguments are now passed,
|       instead of using member variables
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit 6ffef692b0e9a37082eff8eeb7fa8d1134305515
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 18:23:46 2009 +0000
| 
|     fix size?
| 
| M	src/octave/OctaveInterface.cpp
|  
* commit f55d90b2710766ba1962bc8ea1dcae41c19a5181
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 18:03:19 2009 +0000
| 
|     potentially get nd arrays to work
| 
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
|  
* commit eb9240db9e2b4e2b4b3f8e1599ca7855e37289e5
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Thu Feb 26 17:16:02 2009 +0000
| 
|     Hard coded for Cheng
| 
| A	testsuite/test_configure.py
|  
* commit a35e1a0fa9db5ab49680968eababfe75e09bdec8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 26 16:45:25 2009 +0000
| 
|     fix install
| 
| M	src/Makefile.template
|  
* commit 1bc683866f5127eb4ab678aae084b9ad707e0386
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 22:35:34 2009 +0000
| 
|     this adds checks to configure that does not allow building using an illegal
|     config, e.g. --interfaces=python_modular  will trigger an error since libshogun
|     is missing, --interfaces=libshogun,python_modular will work nicely etc
| 
| M	src/configure
|  
* commit 4bf45d44a560358e533d5548cd5214c9183f1bef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 15:22:25 2009 +0000
| 
|     always call ldconfig and create symlinks to soname/library name manually
| 
| M	src/Makefile.template
|  
* commit d3f6357b1d03ae8a26c1c9b5ceab97ffdf5f5672
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 10:54:39 2009 +0000
| 
|     fix svm light removal
| 
| M	Makefile
|  
* commit 90d9de347163fd824c2fe4f52e472b2c3e2921e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 25 08:54:40 2009 +0000
| 
|     this changes the syntax of the custom kernel. a simple
|     
|     sg('set_kernel', 'CUSTOM', km, 'FULL2DIAG');
|     
|     is enough now too in static interfaces, no features nor init required
| 
| M	doc/Doxyfile
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| A	doc/pages/developerreadme.mainpage
| A	doc/pages/soname.mainpage
| A	examples/matlab_and_octave/custom_kernel.m
| A	examples/octave_modular/custom_kernel.m
| A	examples/python_modular/custom_kernel.py
| M	src/NEWS
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/SGInterface.cpp
| M	src/libshogunui/SGInterface.h
|  
* commit 28e72a0d2459213c97b0a74d410c348ef037cd60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 22:08:54 2009 +0000
| 
|     configure / make should work now when libshogun / libshogunui are installed but the local libshogun/libshogunui directories are missing
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| M	src/configure
|  
* commit bec654171545607e97d813788bc0c516ffa6205b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 17:34:21 2009 +0000
| 
|     update copyright to 2009 in lib and base
| 
| M	src/libshogun/base/Parallel.cpp
| M	src/libshogun/base/Parallel.h
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/Version.cpp
| M	src/libshogun/base/Version.h
| M	src/libshogun/base/init.cpp
| M	src/libshogun/classifier/svm/SVM.cpp
| M	src/libshogun/lib/Array.h
| M	src/libshogun/lib/Array2.h
| M	src/libshogun/lib/Array3.h
| M	src/libshogun/lib/Cache.h
| M	src/libshogun/lib/Cplex.cpp
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/File.cpp
| M	src/libshogun/lib/File.h
| M	src/libshogun/lib/List.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/ShogunException.cpp
| M	src/libshogun/lib/ShogunException.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/SimpleFile.h
| M	src/libshogun/lib/Time.cpp
| M	src/libshogun/lib/Time.h
| M	src/libshogun/lib/Trie.cpp
| M	src/libshogun/lib/Trie.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/libshogun/lib/lapack.cpp
| M	src/libshogun/lib/lapack.h
| M	src/libshogun/lib/memory.cpp
| M	src/libshogun/lib/memory.h
|  
* commit a1434904097da03135cb4c881f7ce6acbb06f936
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 17:33:57 2009 +0000
| 
|     ifdef pthread mutex handling
| 
| M	src/libshogun/base/SGObject.h
|  
* commit f9915dcb74421dbd794fa31c36a29024a0f14e42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 16:30:41 2009 +0000
| 
|     test if variables are set and then uninstall things, undo changes in configure
| 
| M	src/Makefile
| M	src/configure
|  
* commit eede095027250784bb2e0c155f35acabe406ce63
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Tue Feb 24 15:40:25 2009 +0000
| 
|     Hack for cleaning up installed shogun, make uninstall
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
|  
* commit dc7bd11e0e7a4a2bbcd7c06936ba45783883268e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 24 06:46:19 2009 +0000
| 
|     this should not skip over custom kernels on init (so users don't need to assign
|     features to custom kernels in combined features)
| 
| M	src/libshogun/kernel/CombinedKernel.cpp
|  
* commit 431f9a79418407686012d50fccbd501b6d75c387
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 19:38:38 2009 +0000
| 
|     fix an error in configure that always de-selected matlab
| 
| M	src/configure
|  
* commit 487560cdf3927921096101870e2a93ea30552369
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 18:13:46 2009 +0000
| 
|     potentially fix a compile error for people that have libshogun headers installed in the same path as they are installing to
| 
| M	src/configure
|  
* commit d07e21ee21b105dfcab9bc5efd9131a759cf4aff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 17:43:20 2009 +0000
| 
|     fix a tricky to trigger tricky to find bug occurring only with num_threads > 1 linadd enabled kernels in the combined kernel: reference counts require mutex locking to avoid accidental destruction of objects.
| 
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.cpp
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/Kernel.cpp
|  
* commit 67ce47733afdcb3cba22c62364c19b1bc277e08d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 15:08:40 2009 +0000
| 
|     removed some crappy lines introducing a compile failure in python_modular
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit 9700a6abbcc256d029339ad37a79b122849b386e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 10:08:49 2009 +0000
| 
|     work on sparse features for python
| 
| M	src/python_modular/swig_typemaps.i
|  
* commit c72b5aed3cf4c70847bfaf01179f5cfaf668656d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 10:08:31 2009 +0000
| 
|     minor reformatting
| 
| M	src/README.developer
| M	src/README.soname
|  
* commit ef51fe2d930eacfabd5f8aea603a8c615434dc2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 08:55:43 2009 +0000
| 
|     polish documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Authors.mainpage
| M	doc/pages/DeveloperTutorial.mainpage
| M	doc/pages/Documentation.mainpage
| M	doc/pages/FAQ.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/INSTALL
| M	src/README.developer
| M	src/README.soname
| M	src/libshogun/base/init.h
| M	src/libshogun/classifier/svm/SVM_light.h
|  
* commit 79db61cf015b047fe79bf4f7582fbf6d00d2c9bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 23 08:55:01 2009 +0000
| 
|     remove copyright from basic examples (they are included on webpage and thus only hurts..)
| 
| M	examples/libshogun/minimal.cpp
| M	examples/libshogun/minimal_svm.cpp
|  
* commit e5d6f4d12141066431e6cb3963c48805d7f231d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:51:57 2009 +0000
| 
|     merge swig interface files
| 
| M	src/NEWS
| D	src/modular/AUCKernel.i
| D	src/modular/Alphabet.i
| D	src/modular/Array.i
| D	src/modular/Array2.i
| D	src/modular/Array3.i
| D	src/modular/AvgDiagKernelNormalizer.i
| D	src/modular/BrayCurtisDistance.i
| D	src/modular/ByteFeatures.i
| D	src/modular/Cache.i
| D	src/modular/CanberraMetric.i
| D	src/modular/CanberraWordDistance.i
| D	src/modular/CharFeatures.i
| D	src/modular/ChebyshewMetric.i
| D	src/modular/Chi2Kernel.i
| D	src/modular/ChiSquareDistance.i
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| D	src/modular/CombinedDotFeatures.i
| D	src/modular/CombinedFeatures.i
| D	src/modular/CombinedKernel.i
| D	src/modular/CommUlongStringKernel.i
| D	src/modular/CommWordStringKernel.i
| D	src/modular/ConstKernel.i
| D	src/modular/CosineDistance.i
| D	src/modular/CustomKernel.i
| D	src/modular/DiagKernel.i
| D	src/modular/DiceKernelNormalizer.i
| M	src/modular/Distance.i
| D	src/modular/DistanceKernel.i
| D	src/modular/DistanceMachine.i
| M	src/modular/Distribution.i
| D	src/modular/DotFeatures.i
| D	src/modular/DummyFeatures.i
| D	src/modular/DynProg.i
| D	src/modular/DynamicArray.i
| D	src/modular/EuclidianDistance.i
| M	src/modular/Evaluation.i
| D	src/modular/ExplicitSpecFeatures.i
| D	src/modular/FKFeatures.i
| M	src/modular/Features.i
| D	src/modular/File.i
| D	src/modular/FixedDegreeStringKernel.i
| D	src/modular/GHMM.i
| D	src/modular/GMNPSVM.i
| D	src/modular/GNPPSVM.i
| D	src/modular/GPBTSVM.i
| D	src/modular/GaussianKernel.i
| D	src/modular/GaussianShiftKernel.i
| D	src/modular/GaussianShortRealKernel.i
| D	src/modular/GeodesicMetric.i
| D	src/modular/HMM.i
| D	src/modular/HammingWordDistance.i
| D	src/modular/Hierarchical.i
| D	src/modular/Histogram.i
| D	src/modular/HistogramWordStringKernel.i
| D	src/modular/IdentityKernelNormalizer.i
| D	src/modular/ImplicitWeightedSpecFeatures.i
| D	src/modular/IntFeatures.i
| D	src/modular/JensenMetric.i
| D	src/modular/KMeans.i
| D	src/modular/KNN.i
| D	src/modular/KRR.i
| M	src/modular/Kernel.i
| D	src/modular/KernelMachine.i
| D	src/modular/KernelNormalizer.i
| D	src/modular/KernelPerceptron.i
| D	src/modular/LDA.i
| D	src/modular/LPBoost.i
| D	src/modular/LPM.i
| D	src/modular/Labels.i
| D	src/modular/LibLinear.i
| D	src/modular/LibSVM.i
| D	src/modular/LibSVMMultiClass.i
| D	src/modular/LibSVMOneClass.i
| D	src/modular/LibSVR.i
| M	src/modular/Library.i
| D	src/modular/LinearByteKernel.i
| D	src/modular/LinearClassifier.i
| D	src/modular/LinearHMM.i
| D	src/modular/LinearKernel.i
| D	src/modular/LinearStringKernel.i
| D	src/modular/LinearWordKernel.i
| D	src/modular/List.i
| D	src/modular/LocalAlignmentStringKernel.i
| D	src/modular/LocalityImprovedStringKernel.i
| D	src/modular/LogPlusOne.i
| D	src/modular/MPDSVM.i
| D	src/modular/ManhattanMetric.i
| D	src/modular/ManhattanWordDistance.i
| D	src/modular/MatchWordStringKernel.i
| D	src/modular/Mathematics.i
| D	src/modular/MindyGramFeatures.i
| D	src/modular/MindyGramKernel.i
| D	src/modular/MinkowskiMetric.i
| D	src/modular/MultiClassSVM.i
| D	src/modular/NormDerivativeLem3.i
| D	src/modular/NormOne.i
| D	src/modular/OligoKernel.i
| D	src/modular/PCACut.i
| D	src/modular/Parallel.i
| D	src/modular/Perceptron.i
| D	src/modular/PerformanceMeasures.i
| D	src/modular/Plif.i
| D	src/modular/PlifArray.i
| D	src/modular/PlifBase.i
| D	src/modular/PluginEstimate.i
| D	src/modular/PolyKernel.i
| D	src/modular/PolyMatchStringKernel.i
| D	src/modular/PolyMatchWordStringKernel.i
| M	src/modular/PreProc.i
| D	src/modular/PruneVarSubMean.i
| D	src/modular/PyramidChi2.i
| D	src/modular/RealDistance.i
| D	src/modular/RealFeatures.i
| D	src/modular/RealFileFeatures.i
| M	src/modular/Regression.i
| A	src/modular/SGBase.i
| D	src/modular/SGObject.i
| D	src/modular/SVM.i
| D	src/modular/SVMLin.i
| D	src/modular/SVMOcas.i
| D	src/modular/SVMSGD.i
| D	src/modular/SVM_light.i
| D	src/modular/SVR_light.i
| D	src/modular/SalzbergWordStringKernel.i
| D	src/modular/ShogunException.i
| D	src/modular/ShortFeatures.i
| D	src/modular/ShortRealFeatures.i
| D	src/modular/SigmoidKernel.i
| D	src/modular/Signal.i
| D	src/modular/SimpleDistance.i
| D	src/modular/SimpleFeatures.i
| D	src/modular/SimpleFile.i
| D	src/modular/SimpleKernel.i
| D	src/modular/SimpleLocalityImprovedStringKernel.i
| D	src/modular/SimplePreProc.i
| D	src/modular/SortUlongString.i
| D	src/modular/SortWordString.i
| D	src/modular/SparseDistance.i
| D	src/modular/SparseEuclidianDistance.i
| D	src/modular/SparseFeatures.i
| D	src/modular/SparseGaussianKernel.i
| D	src/modular/SparseKernel.i
| D	src/modular/SparseLinearKernel.i
| D	src/modular/SparsePolyKernel.i
| D	src/modular/SparsePreProc.i
| D	src/modular/SqrtDiagKernelNormalizer.i
| D	src/modular/StringDistance.i
| D	src/modular/StringFeatures.i
| D	src/modular/StringKernel.i
| D	src/modular/StringPreProc.i
| M	src/modular/Structure.i
| D	src/modular/SubGradientLPM.i
| D	src/modular/SubGradientSVM.i
| D	src/modular/TOPFeatures.i
| D	src/modular/TanimotoDistance.i
| D	src/modular/TanimotoKernelNormalizer.i
| D	src/modular/TensorProductPairKernel.i
| D	src/modular/Time.i
| D	src/modular/Trie.i
| D	src/modular/Version.i
| D	src/modular/WDFeatures.i
| D	src/modular/WDSVMOcas.i
| D	src/modular/WeightedCommWordStringKernel.i
| D	src/modular/WeightedDegreePositionStringKernel.i
| D	src/modular/WeightedDegreeStringKernel.i
| D	src/modular/WordFeatures.i
| D	src/modular/common.i
| D	src/modular/init.i
| D	src/modular/io.i
| D	src/modular/lapack.i
| M	src/octave_modular/swig_typemaps.i
| M	src/python_modular/swig_typemaps.i
| M	src/r_modular/swig_typemaps.i
|  
* commit 94d1390f20b764b7eafc07a318b1e70b8fdf595d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:49:44 2009 +0000
| 
|     add some tutorial bits
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/ModularTutorial.mainpage
| M	doc/pages/StaticTutorial.mainpage
| M	doc/pages/Tutorial.mainpage
|  
* commit 6b628bf88fda59ed1af9dad28f9b0e352f451897
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 22 12:46:55 2009 +0000
| 
|     add lots of documentation and fix a naming collision w/ kernel normalizers
| 
| M	src/libshogun/classifier/Classifier.h
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| M	src/libshogun/features/ExplicitSpecFeatures.h
| M	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| M	src/libshogun/features/SimpleFeatures.h
| M	src/libshogun/features/WDFeatures.h
| M	src/libshogun/kernel/CombinedKernel.h
| M	src/libshogun/kernel/CommWordStringKernel.h
| M	src/libshogun/kernel/DiceKernelNormalizer.h
| M	src/libshogun/kernel/Kernel.h
| M	src/libshogun/lib/io.h
| M	src/libshogun/structure/DynProg.h
|  
* commit 03ce90aff5b61f5a2557521d58caf93ff40c2340
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 21:47:35 2009 +0000
| 
|     start some tutorial
| 
| A	doc/pages/DeveloperTutorial.mainpage
| A	doc/pages/ModularTutorial.mainpage
| A	doc/pages/StaticTutorial.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/NEWS
|  
* commit c59882a0ad06232d26bc9a46864a6fef1958047e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 17:41:16 2009 +0000
| 
|     an attempt to allow building of modular if's only
| 
| M	src/configure
|  
* commit a8abb5c99b2dfd8a7806782998d57c769750e9e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:29:27 2009 +0000
| 
|     Preparing for new Release shogun_0.7.0
| 
| M	Makefile
| M	doc/Doxyfile
|  
* commit 4f8e82559200b4d2f8aecd7c214eb09af82e01c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:28:10 2009 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 4cb1f4ed79f68877e275b256ec3b3cfa9726fea7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:14:38 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 8a11b9fc9b70f10290ea34e452a578e913fb3228
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:11:32 2009 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 35cae83bdca8b4becb4d1afa498b50299b09a38a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 20 09:09:41 2009 +0000
| 
|     preparing for release
| 
| M	README
| M	src/NEWS
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| M	testsuite/matlab_and_octave/classifier.m
|  
* commit d811279b1a9da00affce0131c203fb806f0ac697
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 17:56:29 2009 +0000
| 
|     fix alphabet
| 
| M	testsuite/python_modular/util.py
|  
* commit 64956a4fdf704dd2910dbd6189c2e5f0dfaccb76
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 16:36:01 2009 +0000
| 
|     fix hmm test
| 
| M	testsuite/data/distribution/HMM_1en10_60_4_1_0_6_3_False_CUBE.m
| M	testsuite/generator/featop.py
|  
* commit 3bfa81719436d4c47f260284eed5db5d3a4ddad1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 16:12:57 2009 +0000
| 
|     remove broken ocas and wdocas tests on DNA, disable bias in vanilla ocas test,
|     disable r_modular by default (as long as garbage collections is
|     dysfunctional it better stays like this)
| 
| M	src/configure
| M	src/libshogun/lib/Signal.h
| M	src/modular/init.i
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
| D	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_1_0_False_60_False.m
| M	testsuite/octave_modular/classifier.m
|  
* commit 3f7592657a3f6bedc65f5aa219bfeb179caba794
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 19 14:05:48 2009 +0000
| 
|     add check scripts for libshogun based examples
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/gnmpmkl.cpp
| D	examples/libshogun/gnmpmkltester.cpp
| M	src/Makefile.template
|  
* commit df6bc813c6523f4f9e12b2fde52fa6c08c616a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 18 15:51:48 2009 +0000
| 
|     fix building of modular interfaces
| 
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/modular/Classifier.i
| M	src/modular/Clustering.i
| M	src/modular/Distance.i
| M	src/modular/Distribution.i
| M	src/modular/Evaluation.i
| M	src/modular/Features.i
| M	src/modular/Kernel.i
| M	src/modular/Library.i
| M	src/modular/PreProc.i
| M	src/modular/Regression.i
| M	src/modular/Structure.i
| A	src/modular/init.i
| M	src/octave_modular/sg_print_functions.cpp
| M	src/python_modular/sg_print_functions.cpp
| M	src/r_modular/sg_print_functions.cpp
|  
* commit 90914cdc9509ecddaea462c688074b08c39ac8b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 16 15:07:20 2009 +0000
| 
|     set_svm has to do SG_REF
| 
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
|  
* commit 0957da882acd704b61734c4876a5c2fdeab05b92
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Feb 16 14:48:14 2009 +0000
| 
|     adapted to new version of SG_REF/SG_UNREF scheme,gnmpmkltester is now leakfree
| 
| M	examples/libshogun/gnmpmkltester.cpp
| M	src/libshogun/classifier/svm/GMNPSVM.cpp
| M	src/libshogun/classifier/svm/MultiClassSVM.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.cpp
|  
* commit b5e6bfc8d6076c8e9d091f08bf2bc32b0ff43bf7
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Mon Feb 16 10:02:58 2009 +0000
| 
|     Swap link order for atlas based on http://math-atlas.sourceforge.net/errata.html#LINK
| 
| M	src/configure
|  
* commit a14b92b709ad8c60ff03130941b8c5edd146d8b1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 16 09:33:44 2009 +0000
| 
|     fix typo
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/SGInterface.cpp
|  
* commit d2746c899d76b89b057bb6318830fa3e819cd93d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 16 09:12:34 2009 +0000
| 
|     fix problem with direct passing of precomputed linear feature arrays
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit d30adb5b57c39944e6728f76146850ce536d3e9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 16:55:33 2009 +0000
| 
|     add a minimal libshogun example and a minimal svm
| 
| M	examples/libshogun/Makefile
| A	examples/libshogun/minimal.cpp
| A	examples/libshogun/minimal_svm.cpp
|  
* commit 22d732650e3860a390317f39c4fae9f2f1f1c185
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 16:54:57 2009 +0000
| 
|     add introduction on how to develop shogun extensions and/or use libshogun
| 
| M	src/README.developer
|  
* commit 0b3e3a95ecde64afc0ace589fbdd38970c64b44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 05:15:18 2009 +0000
| 
|     remove convenience constructor as it won't allow us to check whether number of kernels matches number of features
| 
| M	src/libshogun/kernel/CombinedKernel.cpp
| M	src/libshogun/kernel/CombinedKernel.h
|  
* commit 1a8adc5747e4df36434b4cbd78b9df75c8a204fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 14 04:53:13 2009 +0000
| 
|     fix example and include in makefile
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/gnmpmkltester.cpp
|  
* commit fe7cd953983b093bc55192031fdb7f1cc86a00e2
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Feb 13 20:10:00 2009 +0000
| 
|     bugfix in .h: added correct path to an include
|     .cpp : modified for new shogun, version does not work yet
| 
| M	examples/libshogun/gnmpmkltester.cpp
| M	src/libshogun/classifier/svm/gmnpmkl.h
|  
* commit 2472e880fc8cf6fb742d62c32e9818a9400f8403
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 17:05:53 2009 +0000
| 
|     add header
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/rbf_svm.cpp
|  
* commit b34376fb6680afd0979bb3b17257cff508f3ef84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 16:13:31 2009 +0000
| 
|     fix include brackets
| 
| M	src/Makefile.template
|  
* commit 4429d0e110280e97a8dca8de2f79d67383fa0e22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 16:06:32 2009 +0000
| 
|     update example
| 
| M	examples/libshogun/Makefile
| M	examples/libshogun/rbf_svm.cpp
|  
* commit 93e1b6da5c5771ba613cf33ad6eebd447290dd95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 15:23:56 2009 +0000
| 
|     test for SED specific -i flag
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit c13e1a401f660a5fd281db4898a8c450eba3ce0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 15:17:11 2009 +0000
| 
|     fix typo
| 
| M	src/configure
|  
* commit 3f94f8f06fac1f02317963f386a095cefa0bb0a5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 14:46:33 2009 +0000
| 
|     fix make install on osx
| 
| M	src/Makefile.template
|  
* commit 526250f076056b03ed7ed01fabeac49b00aa3edc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 14:34:05 2009 +0000
| 
|     several compile fixes for osx
| 
| M	src/Makefile.template
| M	src/cmdline/CmdLineInterface.cpp
| M	src/configure
|  
* commit 7b1e8352916bdf43b0d939cc4f7fefe081435013
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 13:13:21 2009 +0000
| 
|     ci forgotten files
| 
| A	src/libshogun/base/init.cpp
| A	src/libshogun/base/init.h
|  
* commit d69a4515fdf0a70755866ce28fc79efc6f277383
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri Feb 13 13:12:25 2009 +0000
| 
|     -- bugfix: deleted DynProg object to early
|     	-> now valgrind is happy
|     
|     -- Error handling with more informative outputs
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogunui/SGInterface.cpp
|  
* commit dcb7a29335e015f9fc6dc00e81db76f12d48f871
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 13:10:08 2009 +0000
| 
|     finally get all interfaces to dynamically use libshogun
| 
| M	src/Makefile.template
| M	src/configure
| M	src/matlab/MatlabInterface.cpp
| M	src/octave/OctaveInterface.cpp
| M	src/python/PythonInterface.cpp
| M	src/r/RInterface.cpp
|  
* commit cf2fa7aad74c7558fb285d3445cea9cbd82d3d75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 13 09:29:13 2009 +0000
| 
|     libshogun now has global pointers to function callbacks instead of unresolved symbols
| 
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/base/SGObject.cpp
| M	src/libshogun/base/SGObject.h
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Signal.cpp
| M	src/libshogun/lib/Signal.h
| M	src/libshogun/lib/io.cpp
| M	src/libshogun/lib/io.h
| M	src/matlab/MatlabInterface.cpp
| M	src/matlab/MatlabInterface.h
| D	src/matlab/matlab.cpp
| D	src/matlab/matlab.h
| M	src/octave/OctaveInterface.cpp
| M	src/octave/OctaveInterface.h
| D	src/octave/octave.cpp
| D	src/octave/octave.h
| M	src/python/PythonInterface.cpp
| M	src/python/PythonInterface.h
| D	src/python/python.cpp
| D	src/python/python.h
| M	src/r/RInterface.cpp
| M	src/r/RInterface.h
| D	src/r/r.cpp
| D	src/r/r.h
|  
* commit 4bc6076332a9416c81ac52ab67ec49b59d0f9179
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 22:05:08 2009 +0000
| 
|     get configure to work for modular interfaces again
| 
| M	src/configure
|  
* commit 42708a56387e62fb388aaf98e1bcd02a8543d54e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 21:45:27 2009 +0000
| 
|     add missing "
| 
| M	Makefile
|  
* commit 5f49345451edfe993147ab154ff10d6897a5a3d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 21:42:31 2009 +0000
| 
|     fix top-level make, update news and changelog
| 
| M	Makefile
| M	src/ChangeLog
| M	src/NEWS
|  
* commit 77b1417465ebcb2f1994a8331f762595d23e467f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 20:18:08 2009 +0000
| 
|     get parallel HMM code to work again (it actually never really worked...)
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
|  
* commit 1f61ae8e25e4033f0c91ad3c5d1dd76e7e35742c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 16:28:41 2009 +0000
| 
|     remove NOVIT test in HMM which increases code readability by factor 10, remove cruft from configure and update NEWS
| 
| M	src/NEWS
| M	src/configure
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
|  
* commit 60b92c38dfdaed9f20362cd71d992919c6d11376
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:50:50 2009 +0000
| 
|     update copyright
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
| M	src/libshogun/classifier/svm/SVM_libsvm.h
|  
* commit 47de6870357787587c6008a341586a23d757fab0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:40:21 2009 +0000
| 
|     update to libsvm 2.88
| 
| M	src/libshogun/classifier/svm/SVM_libsvm.cpp
|  
* commit f6223bedbc417d469caef7cf0d2ab153d5352d03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 15:33:16 2009 +0000
| 
|     remove further cruft
| 
| M	src/configure
|  
* commit ed11583aebeba87d2b9060c08939c8727ff4e915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 11:52:23 2009 +0000
| 
|     fix a bug that screwed up HMM training introduced in shogun 0.5.0 (!)
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
|  
* commit 8c77c810815a6e7893a53089fdb0a459974c0aa9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 11:13:28 2009 +0000
| 
|     remove HAVE_SWIG / USE_SWIG cruft
| 
| M	src/configure
|  
* commit 835946726c3a5127e71f9c1e8027061838d34d2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 10:47:34 2009 +0000
| 
|     support ctrl+c in hmm training
| 
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/lib/Mathematics.h
| M	src/libshogun/lib/Signal.cpp
|  
* commit dfbd50c01f39d8c6f2405a853c806cde3fe74c5c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 09:28:41 2009 +0000
| 
|     add document explaining when to change .soname
| 
| A	src/README.soname
|  
* commit e6e5c1a47345ffa0f3c290933c3e5825eb8d7bea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 12 09:13:48 2009 +0000
| 
|     use logcache/parallel hmm structures per default
| 
| M	src/configure
| M	src/libshogun/distributions/hmm/HMM.cpp
| M	src/libshogun/distributions/hmm/HMM.h
| M	src/libshogun/lib/Mathematics.cpp
| M	src/libshogun/lib/Mathematics.h
|  
* commit 63f5fc65a8549e2097f9e1fba0760b645073f89f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 21:59:00 2009 +0000
| 
|     use a different logic to aid re-use of alphabet objects
| 
| M	src/libshogun/features/StringFeatures.h
|  
* commit f1d20993a71add8e5ae68bd86af9890e404ec1b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 21:17:05 2009 +0000
| 
|     add a little more debug output and make make install possible for subdirs
| 
| M	src/Makefile.template
| M	src/libshogun/distributions/histogram/Histogram.h
| M	src/libshogun/features/StringFeatures.h
|  
* commit e8bc260587130a1a32d2375c2949e260142d98cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 15:12:38 2009 +0000
| 
|     dynamically detect library name suffixes, and perform some symlink soname magic
|     add wrappers for run-testsuite, check-examples and make install in Makefile.template.
|     
|     make set_features (in string features) protected. add a typemap that allows FILE* conversion from python files
| 
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/features/StringFeatures.h
| M	src/python_modular/swig_typemaps.i
|  
* commit 6f96a1e3f66b1f5d5d74e4205a4dec24c4da0b81
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:57:10 2009 +0000
| 
|     fix wd mkl example
| 
| M	examples/r/wd_mkl.R
|  
* commit ccf9cf77254e9028641c982f12ef2c85f236116c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:56:18 2009 +0000
| 
|     fix mkl R example
| 
| M	examples/r/mkl_classify_christmas_star.R
|  
* commit a3334a9c89628b8ef2eb4dad24648dde8b4bb807
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 14:46:51 2009 +0000
| 
|     fix combined kernel example bug
| 
| M	examples/python/all_kernels.py
|  
* commit 933ea9ce9f9a5f80d71f157fa2138f14e0c90cb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:24:09 2009 +0000
| 
|     it turns out that install does not preserve symbolic links, use ln & ldconfig instead
| 
| M	src/Makefile.template
| M	src/configure
|  
* commit 0114fd82b96d66acbf4b6aae6e700d8babd200ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:21:03 2009 +0000
| 
|     remove obsolete use_precompute
| 
| M	examples/r/string_kernel.R
|  
* commit c1e4aed1f9429a8262652e4d4f352831d2d63292
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:19:52 2009 +0000
| 
|     fix same bug in R examples
| 
| M	examples/r/all_kernels.R
|  
* commit 47e08883660e4f6202c1c6fbd049b85999f786b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 11 05:17:54 2009 +0000
| 
|     fix bug in combined kernel example
| 
| M	examples/matlab_and_octave/all_kernels.m
|  
* commit 59c7fb06eb81c4db144d2432c5a5b30e9937e080
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 18:53:45 2009 +0000
| 
|     further compile fixes for osx
| 
| M	src/configure
| M	src/libshogun/lib/Mathematics.h
|  
* commit e733e9f3140b49ab7475784697729ebe106ec10b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 17:08:20 2009 +0000
| 
|     call ldconfig on make install (for libshogun*) and make get_name function in io non virtual
| 
| M	src/Makefile.template
| M	src/libshogun/lib/io.h
|  
* commit 283c09d7790ed3ae9321a2a2ff0b3a38ec2ef5a3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 10 14:56:57 2009 +0000
| 
|     accidentally removed a function
| 
| M	src/libshogunui/SGInterface.cpp
|  
* commit 2de15ee5cdb55bbee988bd3b0c813e15a64ab08a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 13:38:40 2009 +0000
| 
|     remove obsolete file
| 
| D	src/octave_modular/octave.cpp
|  
* commit 2a176afa854c890f484e76ec31360b63fca0aafa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 10 06:35:40 2009 +0000
| 
|     ignore -w454
| 
| M	src/configure
|  
* commit 56e26c5278a4fcd19398db18513e02fc1f39529c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 17:58:42 2009 +0000
| 
|     remove cruft
| 
| D	src/octave/sg_print_functions.cpp
|  
* commit 28373884294371a503de14e8fa254e132db33c80
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon Feb 9 16:55:28 2009 +0000
| 
|     new functions for direct access of the precomputed content feature arrays
| 
| M	src/libshogun/structure/DynProg.cpp
| M	src/libshogun/structure/DynProg.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/SGInterface.h
|  
* commit 2703c53b5f622e5a6a87d2d595b3ce88b821bbe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 10:25:26 2009 +0000
| 
|     allow building without doxygen
| 
| M	src/Makefile.template
|  
* commit dfde197336d88e38ce0e105047897296f0efef74
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 06:35:09 2009 +0000
| 
|     update description to match new layout
| 
| M	Makefile
| M	README
| M	doc/pages/StaticRInterface.mainpage
| M	src/INSTALL
|  
* commit 684435607018e4d75e22d63723b3207f7acdac22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 9 06:01:51 2009 +0000
| 
|     fix install source paths
| 
| M	src/.r-install.sh
|  
* commit 8555fe1cf858424ee5547662fde2a0ede6d948ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:39:17 2009 +0000
| 
|     add lib path for r file compilation
| 
| M	src/Makefile.template
|  
* commit 4ec4bb36f1105963251dc42c260996dd1669919e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:29:35 2009 +0000
| 
|     add forgotten file
| 
| A	src/octave_modular/sg_print_functions.cpp
|  
* commit 1d837e7383a35fce6288de1742e604f7a448c24d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 17:17:08 2009 +0000
| 
|     add print functions for modular interfaces and let .so files in modular if's depend on them
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| A	src/octave/sg_print_functions.cpp
| A	src/octave_modular/octave.cpp
| A	src/python_modular/sg_print_functions.cpp
| A	src/r_modular/sg_print_functions.cpp
|  
* commit 4126da7b12dbcb6bd12c3293a0114ce35aa8bded
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:51:54 2009 +0000
| 
|     move r-install.sh to top level src dir and fix typo in doc for dotfeatures, add doc targets for all interfaces
| 
| A	src/.r-install.sh
| M	src/Makefile.template
| M	src/libshogun/features/CombinedDotFeatures.h
| M	src/libshogun/features/DotFeatures.h
| D	src/r/.r-install.sh
|  
* commit 8ec33e79d23cad432df11aa324f4a25b602bdcc3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:04:03 2009 +0000
| 
|     fix path to examples/testsuite
| 
| M	src/Makefile.template
|  
* commit c023100e8d8b62f5a85a0d935b88aa608016fd58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:01:34 2009 +0000
| 
|     rename for examples
| 
| D	examples/octave-modular/all_classifier.m
| D	examples/octave-modular/all_clustering.m
| D	examples/octave-modular/all_distance.m
| D	examples/octave-modular/all_distribution.m
| D	examples/octave-modular/all_kernels.m
| D	examples/octave-modular/all_preproc.m
| D	examples/octave-modular/all_regression.m
| D	examples/octave-modular/check.sh
| D	examples/octave-modular/libsvm.m
| D	examples/octave-modular/tools/load_matrix.m
| A	examples/octave_modular/all_classifier.m
| A	examples/octave_modular/all_clustering.m
| A	examples/octave_modular/all_distance.m
| A	examples/octave_modular/all_distribution.m
| A	examples/octave_modular/all_kernels.m
| A	examples/octave_modular/all_preproc.m
| A	examples/octave_modular/all_regression.m
| A	examples/octave_modular/check.sh
| A	examples/octave_modular/libsvm.m
| A	examples/octave_modular/tools/load_matrix.m
| D	examples/python-modular/all_classifier.py
| D	examples/python-modular/all_clustering.py
| D	examples/python-modular/all_distance.py
| D	examples/python-modular/all_distribution.py
| D	examples/python-modular/all_kernels.py
| D	examples/python-modular/all_preproc.py
| D	examples/python-modular/all_regression.py
| D	examples/python-modular/check.sh
| D	examples/python-modular/check_commwordkernel_memleak.py
| D	examples/python-modular/graphical/all_evaluation.py
| D	examples/python-modular/graphical/krr.py
| D	examples/python-modular/graphical/krr_sinc.py
| D	examples/python-modular/graphical/lda.py
| D	examples/python-modular/graphical/multiple_smvs.py
| D	examples/python-modular/graphical/svm.py
| D	examples/python-modular/graphical/svmlin.py
| D	examples/python-modular/graphical/svr_sinc.py
| D	examples/python-modular/graphical/util.py
| D	examples/python-modular/numpy_commands.py
| D	examples/python-modular/read_svmlight_format.py
| D	examples/python-modular/stringfeatures.py
| D	examples/python-modular/tools/__init__.py
| D	examples/python-modular/tools/load.py
| A	examples/python_modular/all_classifier.py
| A	examples/python_modular/all_clustering.py
| A	examples/python_modular/all_distance.py
| A	examples/python_modular/all_distribution.py
| A	examples/python_modular/all_kernels.py
| A	examples/python_modular/all_preproc.py
| A	examples/python_modular/all_regression.py
| A	examples/python_modular/check.sh
| A	examples/python_modular/check_commwordkernel_memleak.py
| A	examples/python_modular/graphical/all_evaluation.py
| A	examples/python_modular/graphical/krr.py
| A	examples/python_modular/graphical/krr_sinc.py
| A	examples/python_modular/graphical/lda.py
| A	examples/python_modular/graphical/multiple_smvs.py
| A	examples/python_modular/graphical/svm.py
| A	examples/python_modular/graphical/svmlin.py
| A	examples/python_modular/graphical/svr_sinc.py
| A	examples/python_modular/graphical/util.py
| A	examples/python_modular/numpy_commands.py
| A	examples/python_modular/read_svmlight_format.py
| A	examples/python_modular/stringfeatures.py
| A	examples/python_modular/tools/__init__.py
| A	examples/python_modular/tools/load.py
| D	examples/r-modular/all_classifier.R
| D	examples/r-modular/all_clustering.R
| D	examples/r-modular/all_distance.R
| D	examples/r-modular/all_distribution.R
| D	examples/r-modular/all_kernels.R
| D	examples/r-modular/all_preproc.R
| D	examples/r-modular/all_regression.R
| D	examples/r-modular/check.sh
| A	examples/r_modular/all_classifier.R
| A	examples/r_modular/all_clustering.R
| A	examples/r_modular/all_distance.R
| A	examples/r_modular/all_distribution.R
| A	examples/r_modular/all_kernels.R
| A	examples/r_modular/all_preproc.R
| A	examples/r_modular/all_regression.R
| A	examples/r_modular/check.sh
|  
* commit 4dd88e00dbf187883db5c3f09317de6ddf274fd0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 16:00:53 2009 +0000
| 
|     fix doxyfile and reference generation for static interfaces, rename modular interfaces to use underscore (octave _ modular)
| 
| M	doc/Doxyfile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	src/Makefile.template
| D	testsuite/octave-modular/classifier.m
| D	testsuite/octave-modular/clustering.m
| D	testsuite/octave-modular/distance.m
| D	testsuite/octave-modular/distribution.m
| D	testsuite/octave-modular/kernel.m
| D	testsuite/octave-modular/preproc.m
| D	testsuite/octave-modular/regression.m
| D	testsuite/octave-modular/test_all.sh
| D	testsuite/octave-modular/test_one.sh
| D	testsuite/octave-modular/util/check_accuracy.m
| D	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| D	testsuite/octave-modular/util/globals.m
| D	testsuite/octave-modular/util/set_distance.m
| D	testsuite/octave-modular/util/set_features.m
| D	testsuite/octave-modular/util/set_kernel.m
| D	testsuite/octave-modular/util/set_pie.m
| D	testsuite/octave-modular/util/set_pos_and_neg.m
| D	testsuite/octave-modular/util/tobool.m
| A	testsuite/octave_modular/classifier.m
| A	testsuite/octave_modular/clustering.m
| A	testsuite/octave_modular/distance.m
| A	testsuite/octave_modular/distribution.m
| A	testsuite/octave_modular/kernel.m
| A	testsuite/octave_modular/preproc.m
| A	testsuite/octave_modular/regression.m
| A	testsuite/octave_modular/test_all.sh
| A	testsuite/octave_modular/test_one.sh
| A	testsuite/octave_modular/util/check_accuracy.m
| A	testsuite/octave_modular/util/convert_features_and_add_preproc.m
| A	testsuite/octave_modular/util/globals.m
| A	testsuite/octave_modular/util/set_distance.m
| A	testsuite/octave_modular/util/set_features.m
| A	testsuite/octave_modular/util/set_kernel.m
| A	testsuite/octave_modular/util/set_pie.m
| A	testsuite/octave_modular/util/set_pos_and_neg.m
| A	testsuite/octave_modular/util/tobool.m
| D	testsuite/python-modular/classifier.py
| D	testsuite/python-modular/clustering.py
| D	testsuite/python-modular/distance.py
| D	testsuite/python-modular/distribution.py
| D	testsuite/python-modular/kernel.py
| D	testsuite/python-modular/preproc.py
| D	testsuite/python-modular/regression.py
| D	testsuite/python-modular/test_all.sh
| D	testsuite/python-modular/test_one.py
| D	testsuite/python-modular/test_svm_kernel_multiple.py
| D	testsuite/python-modular/util.py
| A	testsuite/python_modular/classifier.py
| A	testsuite/python_modular/clustering.py
| A	testsuite/python_modular/distance.py
| A	testsuite/python_modular/distribution.py
| A	testsuite/python_modular/kernel.py
| A	testsuite/python_modular/preproc.py
| A	testsuite/python_modular/regression.py
| A	testsuite/python_modular/test_all.sh
| A	testsuite/python_modular/test_one.py
| A	testsuite/python_modular/test_svm_kernel_multiple.py
| A	testsuite/python_modular/util.py
| D	testsuite/r-modular/classifier.R
| D	testsuite/r-modular/clustering.R
| D	testsuite/r-modular/distance.R
| D	testsuite/r-modular/distribution.R
| D	testsuite/r-modular/kernel.R
| D	testsuite/r-modular/preproc.R
| D	testsuite/r-modular/regression.R
| D	testsuite/r-modular/test_all.sh
| D	testsuite/r-modular/test_one.R
| D	testsuite/r-modular/test_one.sh
| D	testsuite/r-modular/util/check_accuracy.R
| D	testsuite/r-modular/util/convert_features_and_add_preproc.R
| D	testsuite/r-modular/util/get_distance.R
| D	testsuite/r-modular/util/get_features.R
| D	testsuite/r-modular/util/get_kernel.R
| D	testsuite/r-modular/util/get_pie.R
| D	testsuite/r-modular/util/get_posneg.R
| D	testsuite/r-modular/util/read_mfile.R
| D	testsuite/r-modular/util/tobool.R
| A	testsuite/r_modular/classifier.R
| A	testsuite/r_modular/clustering.R
| A	testsuite/r_modular/distance.R
| A	testsuite/r_modular/distribution.R
| A	testsuite/r_modular/kernel.R
| A	testsuite/r_modular/preproc.R
| A	testsuite/r_modular/regression.R
| A	testsuite/r_modular/test_all.sh
| A	testsuite/r_modular/test_one.R
| A	testsuite/r_modular/test_one.sh
| A	testsuite/r_modular/util/check_accuracy.R
| A	testsuite/r_modular/util/convert_features_and_add_preproc.R
| A	testsuite/r_modular/util/get_distance.R
| A	testsuite/r_modular/util/get_features.R
| A	testsuite/r_modular/util/get_kernel.R
| A	testsuite/r_modular/util/get_pie.R
| A	testsuite/r_modular/util/get_posneg.R
| A	testsuite/r_modular/util/read_mfile.R
| A	testsuite/r_modular/util/tobool.R
|  
* commit c4dbccb7507816362845bbb3a64f88bd1adf51d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 15:35:02 2009 +0000
| 
|     add make doc, make test target for modular interfaces
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit b6faf30efd164c81575962d0db7a8f335846fb3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 12:22:05 2009 +0000
| 
|     fix compilation when cplex is available, check for obsolete swig versions and disable r-modular / octave-modular accordingly
| 
| M	src/configure
| M	src/libshogun/classifier/LPBoost.h
| M	src/libshogun/classifier/LPM.h
| M	src/libshogun/classifier/SubGradientLPM.h
|  
* commit 018dd3aa5440392e01635c41d95d7907c3fdcb17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 10:31:03 2009 +0000
| 
|     improve convergence behaviour of newton q-norm mkl
| 
| M	src/libshogun/classifier/svm/SVM_light.cpp
|  
* commit e87f262b02095a981d40785c40a0651a7403c679
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 10:16:30 2009 +0000
| 
|     fix suffixes
| 
| M	src/configure
|  
* commit e8712c0ebb5d000f07a17a0706ca4d546d6af635
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:56:57 2009 +0000
| 
|     remove unecessary deps
| 
| M	src/Makefile.template
|  
* commit 3fadea8f7b1636d1b8cdbc6de77ae7198f455b01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:52:43 2009 +0000
| 
|     remove trailing .
| 
| M	src/Makefile.template
|  
* commit f2be5d60b25a47a7973ddd846124e73b21fe8754
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:52:21 2009 +0000
| 
|     use -fPIC per default
| 
| M	src/configure
|  
* commit 49406d217dcbfb7131bc0a5bf5f9eeb9ce40d951
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 09:40:41 2009 +0000
| 
|     r_modular needs further deps, create lib/versionstring.h in libshogun
| 
| M	src/Makefile.template
|  
* commit 4d46200f12719e3ed69ae742cdb40bc5a4d616ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:56:52 2009 +0000
| 
|     don't check for unreachable code (for now)
| 
| M	src/configure
|  
* commit 00d7b0dcf77005b20b74ec8b76fe3996989a14d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:56:16 2009 +0000
| 
|     compiles for all interfaces now
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
|  
* commit 64f7a694aa5947b31d22d2421351bcb7bd32c489
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 08:03:43 2009 +0000
| 
|     rename language specific typemaps / add lang specific code to typemaps, configure and makefile for swig.
| 
| M	src/Makefile.template
| M	src/configure
| D	src/octave_modular/octave_typemaps.i
| A	src/octave_modular/swig_typemaps.i
| D	src/python_modular/python_typemaps.i
| A	src/python_modular/swig_typemaps.i
| M	src/r/r.h
| D	src/r_modular/r_typemaps.i
| A	src/r_modular/swig_typemaps.i
|  
* commit b3d3c42a648cc95257c371c8a13d43cc02540b23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 07:42:16 2009 +0000
| 
|     fix include paths
| 
| M	src/modular/Clustering.i
| M	src/modular/Structure.i
|  
* commit 80064551c4d224985f0e577fe0f4751ae03100e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 8 07:00:40 2009 +0000
| 
|     move further .i files to src/modular and adjust inclusion paths and scripts. move language specific .i files into language dirs
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile.template
| M	src/configure
| D	src/libshogun/classifier/Classifier.doxy
| D	src/libshogun/classifier/svm/GMNPSVM.i
| D	src/libshogun/classifier/svm/GNPPSVM.i
| D	src/libshogun/classifier/svm/GPBTSVM.i
| D	src/libshogun/classifier/svm/LibLinear.i
| D	src/libshogun/classifier/svm/LibSVM.i
| D	src/libshogun/classifier/svm/LibSVMMultiClass.i
| D	src/libshogun/classifier/svm/LibSVMOneClass.i
| D	src/libshogun/classifier/svm/MPDSVM.i
| D	src/libshogun/classifier/svm/MultiClassSVM.i
| D	src/libshogun/classifier/svm/SVM.i
| D	src/libshogun/classifier/svm/SVMLin.i
| D	src/libshogun/classifier/svm/SVMOcas.i
| D	src/libshogun/classifier/svm/SVMSGD.i
| D	src/libshogun/classifier/svm/SVM_light.i
| D	src/libshogun/classifier/svm/SubGradientSVM.i
| D	src/libshogun/classifier/svm/WDSVMOcas.i
| D	src/libshogun/clustering/Clustering.doxy
| D	src/libshogun/distance/Distance.doxy
| D	src/libshogun/distributions/Distribution.doxy
| D	src/libshogun/distributions/histogram/Histogram.i
| D	src/libshogun/distributions/hmm/GHMM.i
| D	src/libshogun/distributions/hmm/HMM.i
| D	src/libshogun/distributions/hmm/LinearHMM.i
| D	src/libshogun/evaluation/Evaluation.doxy
| D	src/libshogun/features/Features.doxy
| D	src/libshogun/kernel/Kernel.doxy
| D	src/libshogun/lib/Library.doxy
| D	src/libshogun/preproc/PreProc.doxy
| D	src/libshogun/regression/Regression.doxy
| D	src/libshogun/regression/svr/LibSVR.i
| D	src/libshogun/regression/svr/SVR_light.i
| D	src/libshogun/structure/Structure.doxy
| M	src/modular/AUCKernel.i
| M	src/modular/Alphabet.i
| M	src/modular/Array.i
| M	src/modular/Array2.i
| M	src/modular/Array3.i
| M	src/modular/AvgDiagKernelNormalizer.i
| M	src/modular/ByteFeatures.i
| M	src/modular/Cache.i
| M	src/modular/CharFeatures.i
| M	src/modular/Chi2Kernel.i
| A	src/modular/Classifier.doxy
| M	src/modular/Classifier.i
| A	src/modular/Clustering.doxy
| M	src/modular/Clustering.i
| M	src/modular/CombinedDotFeatures.i
| M	src/modular/CombinedFeatures.i
| M	src/modular/CombinedKernel.i
| M	src/modular/CommUlongStringKernel.i
| M	src/modular/CommWordStringKernel.i
| M	src/modular/ConstKernel.i
| M	src/modular/CustomKernel.i
| M	src/modular/DiagKernel.i
| M	src/modular/DiceKernelNormalizer.i
| A	src/modular/Distance.doxy
| M	src/modular/Distance.i
| M	src/modular/DistanceKernel.i
| M	src/modular/DistanceMachine.i
| A	src/modular/Distribution.doxy
| M	src/modular/Distribution.i
| M	src/modular/DotFeatures.i
| M	src/modular/DummyFeatures.i
| M	src/modular/DynProg.i
| M	src/modular/DynamicArray.i
| M	src/modular/EuclidianDistance.i
| A	src/modular/Evaluation.doxy
| M	src/modular/Evaluation.i
| M	src/modular/ExplicitSpecFeatures.i
| M	src/modular/FKFeatures.i
| A	src/modular/Features.doxy
| M	src/modular/Features.i
| M	src/modular/File.i
| M	src/modular/FixedDegreeStringKernel.i
| A	src/modular/GHMM.i
| A	src/modular/GMNPSVM.i
| A	src/modular/GNPPSVM.i
| A	src/modular/GPBTSVM.i
| M	src/modular/GaussianKernel.i
| M	src/modular/GaussianShiftKernel.i
| M	src/modular/GaussianShortRealKernel.i
| M	src/modular/GeodesicMetric.i
| A	src/modular/HMM.i
| M	src/modular/HammingWordDistance.i
| M	src/modular/Hierarchical.i
| A	src/modular/Histogram.i
| M	src/modular/HistogramWordStringKernel.i
| M	src/modular/IdentityKernelNormalizer.i
| M	src/modular/ImplicitWeightedSpecFeatures.i
| M	src/modular/IntFeatures.i
| M	src/modular/JensenMetric.i
| M	src/modular/KMeans.i
| M	src/modular/KNN.i
| M	src/modular/KRR.i
| A	src/modular/Kernel.doxy
| M	src/modular/Kernel.i
| M	src/modular/KernelMachine.i
| M	src/modular/KernelNormalizer.i
| M	src/modular/Labels.i
| A	src/modular/LibLinear.i
| A	src/modular/LibSVM.i
| A	src/modular/LibSVMMultiClass.i
| A	src/modular/LibSVMOneClass.i
| A	src/modular/LibSVR.i
| A	src/modular/Library.doxy
| M	src/modular/Library.i
| M	src/modular/LinearByteKernel.i
| M	src/modular/LinearClassifier.i
| A	src/modular/LinearHMM.i
| M	src/modular/LinearKernel.i
| M	src/modular/LinearStringKernel.i
| M	src/modular/LinearWordKernel.i
| M	src/modular/List.i
| M	src/modular/LocalAlignmentStringKernel.i
| M	src/modular/LocalityImprovedStringKernel.i
| M	src/modular/LogPlusOne.i
| A	src/modular/MPDSVM.i
| M	src/modular/ManhattanMetric.i
| M	src/modular/ManhattanWordDistance.i
| M	src/modular/MatchWordStringKernel.i
| M	src/modular/Mathematics.i
| M	src/modular/MindyGramFeatures.i
| M	src/modular/MindyGramKernel.i
| M	src/modular/MinkowskiMetric.i
| A	src/modular/MultiClassSVM.i
| M	src/modular/NormDerivativeLem3.i
| M	src/modular/NormOne.i
| M	src/modular/OligoKernel.i
| M	src/modular/PCACut.i
| M	src/modular/PerformanceMeasures.i
| M	src/modular/Plif.i
| M	src/modular/PlifArray.i
| M	src/modular/PlifBase.i
| M	src/modular/PolyKernel.i
| M	src/modular/PolyMatchStringKernel.i
| M	src/modular/PolyMatchWordStringKernel.i
| A	src/modular/PreProc.doxy
| M	src/modular/PreProc.i
| M	src/modular/PruneVarSubMean.i
| M	src/modular/PyramidChi2.i
| M	src/modular/RealDistance.i
| M	src/modular/RealFeatures.i
| M	src/modular/RealFileFeatures.i
| A	src/modular/Regression.doxy
| M	src/modular/Regression.i
| A	src/modular/SVM.i
| A	src/modular/SVMLin.i
| A	src/modular/SVMOcas.i
| A	src/modular/SVMSGD.i
| A	src/modular/SVM_light.i
| A	src/modular/SVR_light.i
| M	src/modular/SalzbergWordStringKernel.i
| M	src/modular/ShogunException.i
| M	src/modular/ShortFeatures.i
| M	src/modular/ShortRealFeatures.i
| M	src/modular/SigmoidKernel.i
| M	src/modular/Signal.i
| M	src/modular/SimpleDistance.i
| M	src/modular/SimpleFeatures.i
| M	src/modular/SimpleFile.i
| M	src/modular/SimpleKernel.i
| M	src/modular/SimpleLocalityImprovedStringKernel.i
| M	src/modular/SimplePreProc.i
| M	src/modular/SortUlongString.i
| M	src/modular/SortWordString.i
| M	src/modular/SparseDistance.i
| M	src/modular/SparseEuclidianDistance.i
| M	src/modular/SparseFeatures.i
| M	src/modular/SparseGaussianKernel.i
| M	src/modular/SparseKernel.i
| M	src/modular/SparseLinearKernel.i
| M	src/modular/SparsePolyKernel.i
| M	src/modular/SparsePreProc.i
| M	src/modular/SqrtDiagKernelNormalizer.i
| M	src/modular/StringDistance.i
| M	src/modular/StringFeatures.i
| M	src/modular/StringKernel.i
| M	src/modular/StringPreProc.i
| A	src/modular/Structure.doxy
| M	src/modular/Structure.i
| A	src/modular/SubGradientSVM.i
| M	src/modular/TOPFeatures.i
| M	src/modular/TanimotoDistance.i
| M	src/modular/TanimotoKernelNormalizer.i
| M	src/modular/TensorProductPairKernel.i
| M	src/modular/Time.i
| M	src/modular/Trie.i
| M	src/modular/Version.i
| M	src/modular/WDFeatures.i
| A	src/modular/WDSVMOcas.i
| M	src/modular/WeightedCommWordStringKernel.i
| M	src/modular/WeightedDegreePositionStringKernel.i
| M	src/modular/WeightedDegreeStringKernel.i
| M	src/modular/WordFeatures.i
| M	src/modular/common.i
| M	src/modular/io.i
| M	src/modular/lapack.i
| D	src/modular/octave_typemaps.i
| D	src/modular/python_typemaps.i
| D	src/modular/r_typemaps.i
| D	src/modular/swig_typemaps.i
| A	src/octave_modular/octave_typemaps.i
| A	src/python_modular/python_typemaps.i
| A	src/r_modular/r_typemaps.i
|  
* commit 11fe38baeb5f39477897c8144f3ec9e2208c5716
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 14:48:54 2009 +0000
| 
|     enable svmlight, get make install and make tests to work
| 
| D	src/.r-install.sh
| M	src/Makefile
| M	src/Makefile.template
| M	src/configure
| M	src/libshogun/regression/svr/SVR_light.cpp
| A	src/r/.r-install.sh
|  
* commit 85b3d3ce4fe23da0994b2a117917c103f800fe6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 13:39:18 2009 +0000
| 
|     fix a misplace endif, quieten output
| 
| M	src/Makefile
| M	src/Makefile.template
|  
* commit 35da2a82c5c45926252750eeefc5a09ba94c86c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 13:04:05 2009 +0000
| 
|     don't fail when matlab is not found remove cruft
| 
| M	src/configure
| D	src/interfaces/Makefile
|  
* commit 77fa30abb5b10fc33531da8dd3f4dc8934c735aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 7 12:51:25 2009 +0000
| 
|     building of libshogun{,ui} and static interfaces works now
| 
| M	src/Makefile
| A	src/Makefile.template
| A	src/cmdline/CmdLineInterface.cpp
| A	src/cmdline/CmdLineInterface.h
| A	src/cmdline/cmdline.cpp
| M	src/configure
| D	src/interfaces/cmdline/CmdLineInterface.cpp
| D	src/interfaces/cmdline/CmdLineInterface.h
| D	src/interfaces/lib/cmdline.cpp
| D	src/interfaces/lib/matlab.cpp
| D	src/interfaces/lib/matlab.h
| D	src/interfaces/lib/octave.cpp
| D	src/interfaces/lib/octave.h
| D	src/interfaces/lib/python.cpp
| D	src/interfaces/lib/python.h
| D	src/interfaces/lib/r.cpp
| D	src/interfaces/lib/r.h
| D	src/interfaces/matlab/MatlabInterface.cpp
| D	src/interfaces/matlab/MatlabInterface.h
| D	src/interfaces/modular/AUCKernel.i
| D	src/interfaces/modular/Alphabet.i
| D	src/interfaces/modular/Array.i
| D	src/interfaces/modular/Array2.i
| D	src/interfaces/modular/Array3.i
| D	src/interfaces/modular/AvgDiagKernelNormalizer.i
| D	src/interfaces/modular/BrayCurtisDistance.i
| D	src/interfaces/modular/ByteFeatures.i
| D	src/interfaces/modular/Cache.i
| D	src/interfaces/modular/CanberraMetric.i
| D	src/interfaces/modular/CanberraWordDistance.i
| D	src/interfaces/modular/CharFeatures.i
| D	src/interfaces/modular/ChebyshewMetric.i
| D	src/interfaces/modular/Chi2Kernel.i
| D	src/interfaces/modular/ChiSquareDistance.i
| D	src/interfaces/modular/Classifier.i
| D	src/interfaces/modular/Clustering.i
| D	src/interfaces/modular/CombinedDotFeatures.i
| D	src/interfaces/modular/CombinedFeatures.i
| D	src/interfaces/modular/CombinedKernel.i
| D	src/interfaces/modular/CommUlongStringKernel.i
| D	src/interfaces/modular/CommWordStringKernel.i
| D	src/interfaces/modular/ConstKernel.i
| D	src/interfaces/modular/CosineDistance.i
| D	src/interfaces/modular/CustomKernel.i
| D	src/interfaces/modular/DiagKernel.i
| D	src/interfaces/modular/DiceKernelNormalizer.i
| D	src/interfaces/modular/Distance.i
| D	src/interfaces/modular/DistanceKernel.i
| D	src/interfaces/modular/DistanceMachine.i
| D	src/interfaces/modular/Distribution.i
| D	src/interfaces/modular/DotFeatures.i
| D	src/interfaces/modular/DummyFeatures.i
| D	src/interfaces/modular/DynProg.i
| D	src/interfaces/modular/DynamicArray.i
| D	src/interfaces/modular/EuclidianDistance.i
| D	src/interfaces/modular/Evaluation.i
| D	src/interfaces/modular/ExplicitSpecFeatures.i
| D	src/interfaces/modular/FKFeatures.i
| D	src/interfaces/modular/Features.i
| D	src/interfaces/modular/File.i
| D	src/interfaces/modular/FixedDegreeStringKernel.i
| D	src/interfaces/modular/GaussianKernel.i
| D	src/interfaces/modular/GaussianShiftKernel.i
| D	src/interfaces/modular/GaussianShortRealKernel.i
| D	src/interfaces/modular/GeodesicMetric.i
| D	src/interfaces/modular/HammingWordDistance.i
| D	src/interfaces/modular/Hierarchical.i
| D	src/interfaces/modular/HistogramWordStringKernel.i
| D	src/interfaces/modular/IdentityKernelNormalizer.i
| D	src/interfaces/modular/ImplicitWeightedSpecFeatures.i
| D	src/interfaces/modular/IntFeatures.i
| D	src/interfaces/modular/JensenMetric.i
| D	src/interfaces/modular/KMeans.i
| D	src/interfaces/modular/KNN.i
| D	src/interfaces/modular/KRR.i
| D	src/interfaces/modular/Kernel.i
| D	src/interfaces/modular/KernelMachine.i
| D	src/interfaces/modular/KernelNormalizer.i
| D	src/interfaces/modular/KernelPerceptron.i
| D	src/interfaces/modular/LDA.i
| D	src/interfaces/modular/LPBoost.i
| D	src/interfaces/modular/LPM.i
| D	src/interfaces/modular/Labels.i
| D	src/interfaces/modular/Library.i
| D	src/interfaces/modular/LinearByteKernel.i
| D	src/interfaces/modular/LinearClassifier.i
| D	src/interfaces/modular/LinearKernel.i
| D	src/interfaces/modular/LinearStringKernel.i
| D	src/interfaces/modular/LinearWordKernel.i
| D	src/interfaces/modular/List.i
| D	src/interfaces/modular/LocalAlignmentStringKernel.i
| D	src/interfaces/modular/LocalityImprovedStringKernel.i
| D	src/interfaces/modular/LogPlusOne.i
| D	src/interfaces/modular/ManhattanMetric.i
| D	src/interfaces/modular/ManhattanWordDistance.i
| D	src/interfaces/modular/MatchWordStringKernel.i
| D	src/interfaces/modular/Mathematics.i
| D	src/interfaces/modular/MindyGramFeatures.i
| D	src/interfaces/modular/MindyGramKernel.i
| D	src/interfaces/modular/MinkowskiMetric.i
| D	src/interfaces/modular/NormDerivativeLem3.i
| D	src/interfaces/modular/NormOne.i
| D	src/interfaces/modular/OligoKernel.i
| D	src/interfaces/modular/PCACut.i
| D	src/interfaces/modular/Parallel.i
| D	src/interfaces/modular/Perceptron.i
| D	src/interfaces/modular/PerformanceMeasures.i
| D	src/interfaces/modular/Plif.i
| D	src/interfaces/modular/PlifArray.i
| D	src/interfaces/modular/PlifBase.i
| D	src/interfaces/modular/PluginEstimate.i
| D	src/interfaces/modular/PolyKernel.i
| D	src/interfaces/modular/PolyMatchStringKernel.i
| D	src/interfaces/modular/PolyMatchWordStringKernel.i
| D	src/interfaces/modular/PreProc.i
| D	src/interfaces/modular/PruneVarSubMean.i
| D	src/interfaces/modular/PyramidChi2.i
| D	src/interfaces/modular/RealDistance.i
| D	src/interfaces/modular/RealFeatures.i
| D	src/interfaces/modular/RealFileFeatures.i
| D	src/interfaces/modular/Regression.i
| D	src/interfaces/modular/SGObject.i
| D	src/interfaces/modular/SalzbergWordStringKernel.i
| D	src/interfaces/modular/ShogunException.i
| D	src/interfaces/modular/ShortFeatures.i
| D	src/interfaces/modular/ShortRealFeatures.i
| D	src/interfaces/modular/SigmoidKernel.i
| D	src/interfaces/modular/Signal.i
| D	src/interfaces/modular/SimpleDistance.i
| D	src/interfaces/modular/SimpleFeatures.i
| D	src/interfaces/modular/SimpleFile.i
| D	src/interfaces/modular/SimpleKernel.i
| D	src/interfaces/modular/SimpleLocalityImprovedStringKernel.i
| D	src/interfaces/modular/SimplePreProc.i
| D	src/interfaces/modular/SortUlongString.i
| D	src/interfaces/modular/SortWordString.i
| D	src/interfaces/modular/SparseDistance.i
| D	src/interfaces/modular/SparseEuclidianDistance.i
| D	src/interfaces/modular/SparseFeatures.i
| D	src/interfaces/modular/SparseGaussianKernel.i
| D	src/interfaces/modular/SparseKernel.i
| D	src/interfaces/modular/SparseLinearKernel.i
| D	src/interfaces/modular/SparsePolyKernel.i
| D	src/interfaces/modular/SparsePreProc.i
| D	src/interfaces/modular/SqrtDiagKernelNormalizer.i
| D	src/interfaces/modular/StringDistance.i
| D	src/interfaces/modular/StringFeatures.i
| D	src/interfaces/modular/StringKernel.i
| D	src/interfaces/modular/StringPreProc.i
| D	src/interfaces/modular/Structure.i
| D	src/interfaces/modular/SubGradientLPM.i
| D	src/interfaces/modular/TOPFeatures.i
| D	src/interfaces/modular/TanimotoDistance.i
| D	src/interfaces/modular/TanimotoKernelNormalizer.i
| D	src/interfaces/modular/TensorProductPairKernel.i
| D	src/interfaces/modular/Time.i
| D	src/interfaces/modular/Trie.i
| D	src/interfaces/modular/Version.i
| D	src/interfaces/modular/WDFeatures.i
| D	src/interfaces/modular/WeightedCommWordStringKernel.i
| D	src/interfaces/modular/WeightedDegreePositionStringKernel.i
| D	src/interfaces/modular/WeightedDegreeStringKernel.i
| D	src/interfaces/modular/WordFeatures.i
| D	src/interfaces/modular/common.i
| D	src/interfaces/modular/io.i
| D	src/interfaces/modular/lapack.i
| D	src/interfaces/modular/octave_typemaps.i
| D	src/interfaces/modular/python_typemaps.i
| D	src/interfaces/modular/r_typemaps.i
| D	src/interfaces/modular/swig_typemaps.i
| D	src/interfaces/octave/OctaveInterface.cpp
| D	src/interfaces/octave/OctaveInterface.h
| D	src/interfaces/python/PythonInterface.cpp
| D	src/interfaces/python/PythonInterface.h
| D	src/interfaces/r/RInterface.cpp
| D	src/interfaces/r/RInterface.h
| D	src/libshogun/Makefile
| M	src/libshogun/lib/Signal.h
| D	src/libshogunui/Makefile
| A	src/matlab/MatlabInterface.cpp
| A	src/matlab/MatlabInterface.h
| A	src/matlab/matlab.cpp
| A	src/matlab/matlab.h
| A	src/modular/AUCKernel.i
| A	src/modular/Alphabet.i
| A	src/modular/Array.i
| A	src/modular/Array2.i
| A	src/modular/Array3.i
| A	src/modular/AvgDiagKernelNormalizer.i
| A	src/modular/BrayCurtisDistance.i
| A	src/modular/ByteFeatures.i
| A	src/modular/Cache.i
| A	src/modular/CanberraMetric.i
| A	src/modular/CanberraWordDistance.i
| A	src/modular/CharFeatures.i
| A	src/modular/ChebyshewMetric.i
| A	src/modular/Chi2Kernel.i
| A	src/modular/ChiSquareDistance.i
| A	src/modular/Classifier.i
| A	src/modular/Clustering.i
| A	src/modular/CombinedDotFeatures.i
| A	src/modular/CombinedFeatures.i
| A	src/modular/CombinedKernel.i
| A	src/modular/CommUlongStringKernel.i
| A	src/modular/CommWordStringKernel.i
| A	src/modular/ConstKernel.i
| A	src/modular/CosineDistance.i
| A	src/modular/CustomKernel.i
| A	src/modular/DiagKernel.i
| A	src/modular/DiceKernelNormalizer.i
| A	src/modular/Distance.i
| A	src/modular/DistanceKernel.i
| A	src/modular/DistanceMachine.i
| A	src/modular/Distribution.i
| A	src/modular/DotFeatures.i
| A	src/modular/DummyFeatures.i
| A	src/modular/DynProg.i
| A	src/modular/DynamicArray.i
| A	src/modular/EuclidianDistance.i
| A	src/modular/Evaluation.i
| A	src/modular/ExplicitSpecFeatures.i
| A	src/modular/FKFeatures.i
| A	src/modular/Features.i
| A	src/modular/File.i
| A	src/modular/FixedDegreeStringKernel.i
| A	src/modular/GaussianKernel.i
| A	src/modular/GaussianShiftKernel.i
| A	src/modular/GaussianShortRealKernel.i
| A	src/modular/GeodesicMetric.i
| A	src/modular/HammingWordDistance.i
| A	src/modular/Hierarchical.i
| A	src/modular/HistogramWordStringKernel.i
| A	src/modular/IdentityKernelNormalizer.i
| A	src/modular/ImplicitWeightedSpecFeatures.i
| A	src/modular/IntFeatures.i
| A	src/modular/JensenMetric.i
| A	src/modular/KMeans.i
| A	src/modular/KNN.i
| A	src/modular/KRR.i
| A	src/modular/Kernel.i
| A	src/modular/KernelMachine.i
| A	src/modular/KernelNormalizer.i
| A	src/modular/KernelPerceptron.i
| A	src/modular/LDA.i
| A	src/modular/LPBoost.i
| A	src/modular/LPM.i
| A	src/modular/Labels.i
| A	src/modular/Library.i
| A	src/modular/LinearByteKernel.i
| A	src/modular/LinearClassifier.i
| A	src/modular/LinearKernel.i
| A	src/modular/LinearStringKernel.i
| A	src/modular/LinearWordKernel.i
| A	src/modular/List.i
| A	src/modular/LocalAlignmentStringKernel.i
| A	src/modular/LocalityImprovedStringKernel.i
| A	src/modular/LogPlusOne.i
| A	src/modular/ManhattanMetric.i
| A	src/modular/ManhattanWordDistance.i
| A	src/modular/MatchWordStringKernel.i
| A	src/modular/Mathematics.i
| A	src/modular/MindyGramFeatures.i
| A	src/modular/MindyGramKernel.i
| A	src/modular/MinkowskiMetric.i
| A	src/modular/NormDerivativeLem3.i
| A	src/modular/NormOne.i
| A	src/modular/OligoKernel.i
| A	src/modular/PCACut.i
| A	src/modular/Parallel.i
| A	src/modular/Perceptron.i
| A	src/modular/PerformanceMeasures.i
| A	src/modular/Plif.i
| A	src/modular/PlifArray.i
| A	src/modular/PlifBase.i
| A	src/modular/PluginEstimate.i
| A	src/modular/PolyKernel.i
| A	src/modular/PolyMatchStringKernel.i
| A	src/modular/PolyMatchWordStringKernel.i
| A	src/modular/PreProc.i
| A	src/modular/PruneVarSubMean.i
| A	src/modular/PyramidChi2.i
| A	src/modular/RealDistance.i
| A	src/modular/RealFeatures.i
| A	src/modular/RealFileFeatures.i
| A	src/modular/Regression.i
| A	src/modular/SGObject.i
| A	src/modular/SalzbergWordStringKernel.i
| A	src/modular/ShogunException.i
| A	src/modular/ShortFeatures.i
| A	src/modular/ShortRealFeatures.i
| A	src/modular/SigmoidKernel.i
| A	src/modular/Signal.i
| A	src/modular/SimpleDistance.i
| A	src/modular/SimpleFeatures.i
| A	src/modular/SimpleFile.i
| A	src/modular/SimpleKernel.i
| A	src/modular/SimpleLocalityImprovedStringKernel.i
| A	src/modular/SimplePreProc.i
| A	src/modular/SortUlongString.i
| A	src/modular/SortWordString.i
| A	src/modular/SparseDistance.i
| A	src/modular/SparseEuclidianDistance.i
| A	src/modular/SparseFeatures.i
| A	src/modular/SparseGaussianKernel.i
| A	src/modular/SparseKernel.i
| A	src/modular/SparseLinearKernel.i
| A	src/modular/SparsePolyKernel.i
| A	src/modular/SparsePreProc.i
| A	src/modular/SqrtDiagKernelNormalizer.i
| A	src/modular/StringDistance.i
| A	src/modular/StringFeatures.i
| A	src/modular/StringKernel.i
| A	src/modular/StringPreProc.i
| A	src/modular/Structure.i
| A	src/modular/SubGradientLPM.i
| A	src/modular/TOPFeatures.i
| A	src/modular/TanimotoDistance.i
| A	src/modular/TanimotoKernelNormalizer.i
| A	src/modular/TensorProductPairKernel.i
| A	src/modular/Time.i
| A	src/modular/Trie.i
| A	src/modular/Version.i
| A	src/modular/WDFeatures.i
| A	src/modular/WeightedCommWordStringKernel.i
| A	src/modular/WeightedDegreePositionStringKernel.i
| A	src/modular/WeightedDegreeStringKernel.i
| A	src/modular/WordFeatures.i
| A	src/modular/common.i
| A	src/modular/io.i
| A	src/modular/lapack.i
| A	src/modular/octave_typemaps.i
| A	src/modular/python_typemaps.i
| A	src/modular/r_typemaps.i
| A	src/modular/swig_typemaps.i
| A	src/octave/OctaveInterface.cpp
| A	src/octave/OctaveInterface.h
| A	src/octave/octave.cpp
| A	src/octave/octave.h
| A	src/python/PythonInterface.cpp
| A	src/python/PythonInterface.h
| A	src/python/python.cpp
| A	src/python/python.h
| A	src/r/RInterface.cpp
| A	src/r/RInterface.h
| A	src/r/r.cpp
| A	src/r/r.h
|  
* commit 913e6376cc96405a4532f52c54f8a6b3c9135286
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 5 21:48:39 2009 +0000
| 
|     further restructuring
| 
| M	src/Makefile
| M	src/configure
| M	src/interfaces/Makefile
| A	src/interfaces/cmdline/CmdLineInterface.cpp
| A	src/interfaces/cmdline/CmdLineInterface.h
| M	src/interfaces/lib/cmdline.cpp
| M	src/interfaces/lib/matlab.cpp
| M	src/interfaces/lib/matlab.h
| M	src/interfaces/lib/octave.cpp
| M	src/interfaces/lib/octave.h
| M	src/interfaces/lib/python.cpp
| M	src/interfaces/lib/r.cpp
| M	src/interfaces/lib/r.h
| A	src/interfaces/matlab/MatlabInterface.cpp
| A	src/interfaces/matlab/MatlabInterface.h
| A	src/interfaces/octave/OctaveInterface.cpp
| A	src/interfaces/octave/OctaveInterface.h
| A	src/interfaces/python/PythonInterface.cpp
| A	src/interfaces/python/PythonInterface.h
| A	src/interfaces/r/RInterface.cpp
| A	src/interfaces/r/RInterface.h
| D	src/interfaces/static/CmdLineInterface.cpp
| D	src/interfaces/static/CmdLineInterface.h
| D	src/interfaces/static/MatlabInterface.cpp
| D	src/interfaces/static/MatlabInterface.h
| D	src/interfaces/static/OctaveInterface.cpp
| D	src/interfaces/static/OctaveInterface.h
| D	src/interfaces/static/PythonInterface.cpp
| D	src/interfaces/static/PythonInterface.h
| D	src/interfaces/static/RInterface.cpp
| D	src/interfaces/static/RInterface.h
| M	src/libshogunui/Makefile
|  
* commit 97715266e1cfea431eff0512d680b4143d6716e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 5 09:54:32 2009 +0000
| 
|     more progress on new configure/make system
| 
| M	src/Makefile
| M	src/NEWS
| M	src/configure
| A	src/interfaces/Makefile
| M	src/interfaces/static/CmdLineInterface.cpp
| M	src/interfaces/static/CmdLineInterface.h
| D	src/interfaces/static/SGInterface.cpp
| D	src/interfaces/static/SGInterface.h
| D	src/interfaces/static/SyntaxHighLight.h
| M	src/libshogun/Makefile
| M	src/libshogunui/GUIClassifier.cpp
| M	src/libshogunui/GUIClassifier.h
| M	src/libshogunui/GUICommands.h
| M	src/libshogunui/GUIDistance.cpp
| M	src/libshogunui/GUIDistance.h
| M	src/libshogunui/GUIFeatures.cpp
| M	src/libshogunui/GUIFeatures.h
| M	src/libshogunui/GUIHMM.cpp
| M	src/libshogunui/GUIHMM.h
| M	src/libshogunui/GUIKernel.cpp
| M	src/libshogunui/GUIKernel.h
| M	src/libshogunui/GUILabels.cpp
| M	src/libshogunui/GUILabels.h
| M	src/libshogunui/GUIMath.cpp
| M	src/libshogunui/GUIMath.h
| M	src/libshogunui/GUIPluginEstimate.cpp
| M	src/libshogunui/GUIPluginEstimate.h
| M	src/libshogunui/GUIPreProc.cpp
| M	src/libshogunui/GUIPreProc.h
| M	src/libshogunui/GUIStructure.cpp
| M	src/libshogunui/GUIStructure.h
| M	src/libshogunui/GUITime.cpp
| M	src/libshogunui/GUITime.h
| A	src/libshogunui/Makefile
| A	src/libshogunui/SGInterface.cpp
| A	src/libshogunui/SGInterface.h
| A	src/libshogunui/SyntaxHighLight.h
|  
* commit 78e3d592d8f0e9366d4ae1386ca9c3c3a13e0869
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 4 22:38:58 2009 +0000
| 
|     further improve configure
| 
| M	src/configure
|  
* commit b5f7c4dfbca65b3c474b7f76d6ce0ad01c8f8265
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 4 14:48:25 2009 +0000
| 
|     move libshogun/lib/matlab.{cpp,h} etc to interfaces/lib
| 
| M	src/Makefile
| M	src/NEWS
| M	src/configure
| A	src/interfaces/lib/cmdline.cpp
| A	src/interfaces/lib/matlab.cpp
| A	src/interfaces/lib/matlab.h
| A	src/interfaces/lib/octave.cpp
| A	src/interfaces/lib/octave.h
| A	src/interfaces/lib/python.cpp
| A	src/interfaces/lib/python.h
| A	src/interfaces/lib/r.cpp
| A	src/interfaces/lib/r.h
| A	src/libshogun/Makefile
| M	src/libshogun/base/Version.h
| M	src/libshogun/lib/Cplex.h
| M	src/libshogun/lib/Signal.cpp
| D	src/libshogun/lib/cmdline.cpp
| M	src/libshogun/lib/io.cpp
| D	src/libshogun/lib/matlab.cpp
| D	src/libshogun/lib/matlab.h
| D	src/libshogun/lib/octave.cpp
| D	src/libshogun/lib/octave.h
| D	src/libshogun/lib/python.cpp
| D	src/libshogun/lib/python.h
| D	src/libshogun/lib/r.cpp
| D	src/libshogun/lib/r.h
| M	src/libshogun/structure/Plif.h
|  
* commit 77e7361091336a8839538258d500bbb92b8c6c1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:56:24 2009 +0000
| 
|     remove obsolete dirs
|  
* commit 9ce4783231b50821c94e94e25c69a2dbb39ccd6c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:55:40 2009 +0000
| 
|     move things into static interfaces
| 
| D	src/guilib/GUIClassifier.cpp
| D	src/guilib/GUIClassifier.h
| D	src/guilib/GUICommands.h
| D	src/guilib/GUIDistance.cpp
| D	src/guilib/GUIDistance.h
| D	src/guilib/GUIFeatures.cpp
| D	src/guilib/GUIFeatures.h
| D	src/guilib/GUIHMM.cpp
| D	src/guilib/GUIHMM.h
| D	src/guilib/GUIKernel.cpp
| D	src/guilib/GUIKernel.h
| D	src/guilib/GUILabels.cpp
| D	src/guilib/GUILabels.h
| D	src/guilib/GUIMath.cpp
| D	src/guilib/GUIMath.h
| D	src/guilib/GUIPluginEstimate.cpp
| D	src/guilib/GUIPluginEstimate.h
| D	src/guilib/GUIPreProc.cpp
| D	src/guilib/GUIPreProc.h
| D	src/guilib/GUIStructure.cpp
| D	src/guilib/GUIStructure.h
| D	src/guilib/GUITime.cpp
| D	src/guilib/GUITime.h
| D	src/interface/CmdLineInterface.cpp
| D	src/interface/CmdLineInterface.h
| D	src/interface/MatlabInterface.cpp
| D	src/interface/MatlabInterface.h
| D	src/interface/OctaveInterface.cpp
| D	src/interface/OctaveInterface.h
| D	src/interface/PythonInterface.cpp
| D	src/interface/PythonInterface.h
| D	src/interface/RInterface.cpp
| D	src/interface/RInterface.h
| D	src/interface/SGInterface.cpp
| D	src/interface/SGInterface.h
| D	src/interface/SyntaxHighLight.h
| A	src/interfaces/static/CmdLineInterface.cpp
| A	src/interfaces/static/CmdLineInterface.h
| A	src/interfaces/static/MatlabInterface.cpp
| A	src/interfaces/static/MatlabInterface.h
| A	src/interfaces/static/OctaveInterface.cpp
| A	src/interfaces/static/OctaveInterface.h
| A	src/interfaces/static/PythonInterface.cpp
| A	src/interfaces/static/PythonInterface.h
| A	src/interfaces/static/RInterface.cpp
| A	src/interfaces/static/RInterface.h
| A	src/interfaces/static/SGInterface.cpp
| A	src/interfaces/static/SGInterface.h
| A	src/interfaces/static/SyntaxHighLight.h
| A	src/libshogunui/GUIClassifier.cpp
| A	src/libshogunui/GUIClassifier.h
| A	src/libshogunui/GUICommands.h
| A	src/libshogunui/GUIDistance.cpp
| A	src/libshogunui/GUIDistance.h
| A	src/libshogunui/GUIFeatures.cpp
| A	src/libshogunui/GUIFeatures.h
| A	src/libshogunui/GUIHMM.cpp
| A	src/libshogunui/GUIHMM.h
| A	src/libshogunui/GUIKernel.cpp
| A	src/libshogunui/GUIKernel.h
| A	src/libshogunui/GUILabels.cpp
| A	src/libshogunui/GUILabels.h
| A	src/libshogunui/GUIMath.cpp
| A	src/libshogunui/GUIMath.h
| A	src/libshogunui/GUIPluginEstimate.cpp
| A	src/libshogunui/GUIPluginEstimate.h
| A	src/libshogunui/GUIPreProc.cpp
| A	src/libshogunui/GUIPreProc.h
| A	src/libshogunui/GUIStructure.cpp
| A	src/libshogunui/GUIStructure.h
| A	src/libshogunui/GUITime.cpp
| A	src/libshogunui/GUITime.h
|  
* commit eb73bab5d0b6d5a3e7c59f600ec76c61ae350c46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:53:15 2009 +0000
| 
|     move things into libshogun
| 
| D	src/base/Parallel.cpp
| D	src/base/Parallel.h
| D	src/base/SGObject.cpp
| D	src/base/SGObject.h
| D	src/base/Version.cpp
| D	src/base/Version.h
| D	src/classifier/Classifier.cpp
| D	src/classifier/Classifier.doxy
| D	src/classifier/Classifier.h
| D	src/classifier/KNN.cpp
| D	src/classifier/KNN.h
| D	src/classifier/KernelPerceptron.cpp
| D	src/classifier/KernelPerceptron.h
| D	src/classifier/LDA.cpp
| D	src/classifier/LDA.h
| D	src/classifier/LPBoost.cpp
| D	src/classifier/LPBoost.h
| D	src/classifier/LPM.cpp
| D	src/classifier/LPM.h
| D	src/classifier/LinearClassifier.cpp
| D	src/classifier/LinearClassifier.h
| D	src/classifier/Perceptron.cpp
| D	src/classifier/Perceptron.h
| D	src/classifier/PluginEstimate.cpp
| D	src/classifier/PluginEstimate.h
| D	src/classifier/SubGradientLPM.cpp
| D	src/classifier/SubGradientLPM.h
| D	src/classifier/__init__.py
| D	src/classifier/svm/CPLEXSVM.cpp
| D	src/classifier/svm/CPLEXSVM.h
| D	src/classifier/svm/GMNPSVM.cpp
| D	src/classifier/svm/GMNPSVM.h
| D	src/classifier/svm/GMNPSVM.i
| D	src/classifier/svm/GNPPSVM.cpp
| D	src/classifier/svm/GNPPSVM.h
| D	src/classifier/svm/GNPPSVM.i
| D	src/classifier/svm/GPBTSVM.cpp
| D	src/classifier/svm/GPBTSVM.h
| D	src/classifier/svm/GPBTSVM.i
| D	src/classifier/svm/LibLinear.cpp
| D	src/classifier/svm/LibLinear.h
| D	src/classifier/svm/LibLinear.i
| D	src/classifier/svm/LibSVM.cpp
| D	src/classifier/svm/LibSVM.h
| D	src/classifier/svm/LibSVM.i
| D	src/classifier/svm/LibSVMMultiClass.cpp
| D	src/classifier/svm/LibSVMMultiClass.h
| D	src/classifier/svm/LibSVMMultiClass.i
| D	src/classifier/svm/LibSVMOneClass.cpp
| D	src/classifier/svm/LibSVMOneClass.h
| D	src/classifier/svm/LibSVMOneClass.i
| D	src/classifier/svm/MPDSVM.cpp
| D	src/classifier/svm/MPDSVM.h
| D	src/classifier/svm/MPDSVM.i
| D	src/classifier/svm/MultiClassSVM.cpp
| D	src/classifier/svm/MultiClassSVM.h
| D	src/classifier/svm/MultiClassSVM.i
| D	src/classifier/svm/SVM.cpp
| D	src/classifier/svm/SVM.h
| D	src/classifier/svm/SVM.i
| D	src/classifier/svm/SVMLin.cpp
| D	src/classifier/svm/SVMLin.h
| D	src/classifier/svm/SVMLin.i
| D	src/classifier/svm/SVMOcas.cpp
| D	src/classifier/svm/SVMOcas.h
| D	src/classifier/svm/SVMOcas.i
| D	src/classifier/svm/SVMSGD.cpp
| D	src/classifier/svm/SVMSGD.h
| D	src/classifier/svm/SVMSGD.i
| D	src/classifier/svm/SVM_libsvm.cpp
| D	src/classifier/svm/SVM_libsvm.h
| D	src/classifier/svm/SVM_light.cpp
| D	src/classifier/svm/SVM_light.h
| D	src/classifier/svm/SVM_light.i
| D	src/classifier/svm/SVM_linear.cpp
| D	src/classifier/svm/SVM_linear.h
| D	src/classifier/svm/SubGradientSVM.cpp
| D	src/classifier/svm/SubGradientSVM.h
| D	src/classifier/svm/SubGradientSVM.i
| D	src/classifier/svm/Tron.cpp
| D	src/classifier/svm/Tron.h
| D	src/classifier/svm/WDSVMOcas.cpp
| D	src/classifier/svm/WDSVMOcas.h
| D	src/classifier/svm/WDSVMOcas.i
| D	src/classifier/svm/__init__.py
| D	src/classifier/svm/gmnplib.cpp
| D	src/classifier/svm/gmnplib.h
| D	src/classifier/svm/gmnpmkl.cpp
| D	src/classifier/svm/gmnpmkl.h
| D	src/classifier/svm/gnpplib.cpp
| D	src/classifier/svm/gnpplib.h
| D	src/classifier/svm/gpdt.cpp
| D	src/classifier/svm/gpdt.h
| D	src/classifier/svm/gpdtsolve.cpp
| D	src/classifier/svm/gpdtsolve.h
| D	src/classifier/svm/gpm.cpp
| D	src/classifier/svm/gpm.h
| D	src/classifier/svm/libocas.cpp
| D	src/classifier/svm/libocas.h
| D	src/classifier/svm/libocas_common.h
| D	src/classifier/svm/pr_loqo.cpp
| D	src/classifier/svm/pr_loqo.h
| D	src/classifier/svm/qpbsvmlib.cpp
| D	src/classifier/svm/qpbsvmlib.h
| D	src/classifier/svm/qpssvmlib.cpp
| D	src/classifier/svm/qpssvmlib.h
| D	src/classifier/svm/ssl.cpp
| D	src/classifier/svm/ssl.h
| D	src/clustering/Clustering.doxy
| D	src/clustering/Hierarchical.cpp
| D	src/clustering/Hierarchical.h
| D	src/clustering/KMeans.cpp
| D	src/clustering/KMeans.h
| D	src/distance/BrayCurtisDistance.cpp
| D	src/distance/BrayCurtisDistance.h
| D	src/distance/CanberraMetric.cpp
| D	src/distance/CanberraMetric.h
| D	src/distance/CanberraWordDistance.cpp
| D	src/distance/CanberraWordDistance.h
| D	src/distance/ChebyshewMetric.cpp
| D	src/distance/ChebyshewMetric.h
| D	src/distance/ChiSquareDistance.cpp
| D	src/distance/ChiSquareDistance.h
| D	src/distance/CosineDistance.cpp
| D	src/distance/CosineDistance.h
| D	src/distance/Distance.cpp
| D	src/distance/Distance.doxy
| D	src/distance/Distance.h
| D	src/distance/DistanceMachine.cpp
| D	src/distance/DistanceMachine.h
| D	src/distance/EuclidianDistance.cpp
| D	src/distance/EuclidianDistance.h
| D	src/distance/GeodesicMetric.cpp
| D	src/distance/GeodesicMetric.h
| D	src/distance/HammingWordDistance.cpp
| D	src/distance/HammingWordDistance.h
| D	src/distance/JensenMetric.cpp
| D	src/distance/JensenMetric.h
| D	src/distance/ManhattanMetric.cpp
| D	src/distance/ManhattanMetric.h
| D	src/distance/ManhattanWordDistance.cpp
| D	src/distance/ManhattanWordDistance.h
| D	src/distance/MinkowskiMetric.cpp
| D	src/distance/MinkowskiMetric.h
| D	src/distance/RealDistance.h
| D	src/distance/SimpleDistance.h
| D	src/distance/SparseDistance.h
| D	src/distance/SparseEuclidianDistance.cpp
| D	src/distance/SparseEuclidianDistance.h
| D	src/distance/StringDistance.h
| D	src/distance/TanimotoDistance.cpp
| D	src/distance/TanimotoDistance.h
| D	src/distributions/Distribution.cpp
| D	src/distributions/Distribution.doxy
| D	src/distributions/Distribution.h
| D	src/distributions/histogram/Histogram.cpp
| D	src/distributions/histogram/Histogram.h
| D	src/distributions/histogram/Histogram.i
| D	src/distributions/hmm/GHMM.cpp
| D	src/distributions/hmm/GHMM.h
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| D	src/distributions/hmm/HMM.cpp
| D	src/distributions/hmm/HMM.h
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| D	src/distributions/hmm/LinearHMM.cpp
| D	src/distributions/hmm/LinearHMM.h
| D	src/distributions/hmm/LinearHMM.i
| D	src/evaluation/Evaluation.doxy
| D	src/evaluation/PerformanceMeasures.cpp
| D	src/evaluation/PerformanceMeasures.h
| D	src/features/Alphabet.cpp
| D	src/features/Alphabet.h
| D	src/features/ByteFeatures.cpp
| D	src/features/ByteFeatures.h
| D	src/features/CharFeatures.cpp
| D	src/features/CharFeatures.h
| D	src/features/CombinedDotFeatures.cpp
| D	src/features/CombinedDotFeatures.h
| D	src/features/CombinedFeatures.cpp
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| D	src/features/DotFeatures.cpp
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| D	src/features/DummyFeatures.h
| D	src/features/ExplicitSpecFeatures.cpp
| D	src/features/ExplicitSpecFeatures.h
| D	src/features/FKFeatures.cpp
| D	src/features/FKFeatures.h
| D	src/features/Features.cpp
| D	src/features/Features.doxy
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| D	src/features/ImplicitWeightedSpecFeatures.cpp
| D	src/features/ImplicitWeightedSpecFeatures.h
| D	src/features/IntFeatures.cpp
| D	src/features/IntFeatures.h
| D	src/features/Labels.cpp
| D	src/features/Labels.h
| D	src/features/MindyGramFeatures.cpp
| D	src/features/MindyGramFeatures.h
| D	src/features/RealFeatures.cpp
| D	src/features/RealFeatures.h
| D	src/features/RealFileFeatures.cpp
| D	src/features/RealFileFeatures.h
| D	src/features/ShortFeatures.cpp
| D	src/features/ShortFeatures.h
| D	src/features/ShortRealFeatures.cpp
| D	src/features/ShortRealFeatures.h
| D	src/features/SimpleFeatures.h
| D	src/features/SparseFeatures.h
| D	src/features/StringFeatures.cpp
| D	src/features/StringFeatures.h
| D	src/features/TOPFeatures.cpp
| D	src/features/TOPFeatures.h
| D	src/features/WDFeatures.cpp
| D	src/features/WDFeatures.h
| D	src/features/WordFeatures.cpp
| D	src/features/WordFeatures.h
| D	src/features/__init__.py
| D	src/kernel/AUCKernel.cpp
| D	src/kernel/AUCKernel.h
| D	src/kernel/AvgDiagKernelNormalizer.h
| D	src/kernel/Chi2Kernel.cpp
| D	src/kernel/Chi2Kernel.h
| D	src/kernel/CombinedKernel.cpp
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| D	src/kernel/CommUlongStringKernel.cpp
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| D	src/kernel/CommWordStringKernel.cpp
| D	src/kernel/CommWordStringKernel.h
| D	src/kernel/ConstKernel.cpp
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| D	src/kernel/CustomKernel.cpp
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| D	src/kernel/DiagKernel.cpp
| D	src/kernel/DiagKernel.h
| D	src/kernel/DiceKernelNormalizer.h
| D	src/kernel/DistanceKernel.cpp
| D	src/kernel/DistanceKernel.h
| D	src/kernel/FirstElementKernelNormalizer.h
| D	src/kernel/FixedDegreeStringKernel.cpp
| D	src/kernel/FixedDegreeStringKernel.h
| D	src/kernel/GaussianKernel.cpp
| D	src/kernel/GaussianKernel.h
| D	src/kernel/GaussianShiftKernel.cpp
| D	src/kernel/GaussianShiftKernel.h
| D	src/kernel/GaussianShortRealKernel.cpp
| D	src/kernel/GaussianShortRealKernel.h
| D	src/kernel/HistogramWordStringKernel.cpp
| D	src/kernel/HistogramWordStringKernel.h
| D	src/kernel/IdentityKernelNormalizer.h
| D	src/kernel/Kernel.cpp
| D	src/kernel/Kernel.doxy
| D	src/kernel/Kernel.h
| D	src/kernel/KernelMachine.cpp
| D	src/kernel/KernelMachine.h
| D	src/kernel/KernelNormalizer.h
| D	src/kernel/LinearByteKernel.cpp
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| D	src/kernel/LinearKernel.cpp
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| D	src/kernel/LinearStringKernel.cpp
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| D	src/kernel/LinearWordKernel.cpp
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| D	src/kernel/LocalAlignmentStringKernel.cpp
| D	src/kernel/LocalAlignmentStringKernel.h
| D	src/kernel/LocalityImprovedStringKernel.cpp
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| D	src/kernel/MatchWordStringKernel.cpp
| D	src/kernel/MatchWordStringKernel.h
| D	src/kernel/MindyGramKernel.cpp
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| D	src/kernel/OligoKernel.cpp
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| D	src/kernel/PolyKernel.cpp
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| D	src/kernel/PolyMatchStringKernel.cpp
| D	src/kernel/PolyMatchStringKernel.h
| D	src/kernel/PolyMatchWordStringKernel.cpp
| D	src/kernel/PolyMatchWordStringKernel.h
| D	src/kernel/PyramidChi2.cpp
| D	src/kernel/PyramidChi2.h
| D	src/kernel/SalzbergWordStringKernel.cpp
| D	src/kernel/SalzbergWordStringKernel.h
| D	src/kernel/SigmoidKernel.cpp
| D	src/kernel/SigmoidKernel.h
| D	src/kernel/SimpleKernel.h
| D	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| D	src/kernel/SimpleLocalityImprovedStringKernel.h
| D	src/kernel/SparseGaussianKernel.cpp
| D	src/kernel/SparseGaussianKernel.h
| D	src/kernel/SparseKernel.h
| D	src/kernel/SparseLinearKernel.cpp
| D	src/kernel/SparseLinearKernel.h
| D	src/kernel/SparsePolyKernel.cpp
| D	src/kernel/SparsePolyKernel.h
| D	src/kernel/SqrtDiagKernelNormalizer.h
| D	src/kernel/StringKernel.h
| D	src/kernel/TanimotoKernelNormalizer.h
| D	src/kernel/TensorProductPairKernel.cpp
| D	src/kernel/TensorProductPairKernel.h
| D	src/kernel/WeightedCommWordStringKernel.cpp
| D	src/kernel/WeightedCommWordStringKernel.h
| D	src/kernel/WeightedDegreePositionStringKernel.cpp
| D	src/kernel/WeightedDegreePositionStringKernel.h
| D	src/kernel/WeightedDegreeStringKernel.cpp
| D	src/kernel/WeightedDegreeStringKernel.h
| D	src/kernel/__init__.py
| D	src/lib/Array.h
| D	src/lib/Array2.h
| D	src/lib/Array3.h
| D	src/lib/Cache.h
| D	src/lib/Cplex.cpp
| D	src/lib/Cplex.h
| D	src/lib/DynamicArray.h
| D	src/lib/File.cpp
| D	src/lib/File.h
| D	src/lib/Library.doxy
| D	src/lib/List.h
| D	src/lib/Mathematics.cpp
| D	src/lib/Mathematics.h
| D	src/lib/ShogunException.cpp
| D	src/lib/ShogunException.h
| D	src/lib/Signal.cpp
| D	src/lib/Signal.h
| D	src/lib/SimpleFile.h
| D	src/lib/Time.cpp
| D	src/lib/Time.h
| D	src/lib/Trie.cpp
| D	src/lib/Trie.h
| D	src/lib/__init__.py
| D	src/lib/cmdline.cpp
| D	src/lib/common.h
| D	src/lib/io.cpp
| D	src/lib/io.h
| D	src/lib/lapack.cpp
| D	src/lib/lapack.h
| D	src/lib/matlab.cpp
| D	src/lib/matlab.h
| D	src/lib/memory.cpp
| D	src/lib/memory.h
| D	src/lib/octave.cpp
| D	src/lib/octave.h
| D	src/lib/python.cpp
| D	src/lib/python.h
| D	src/lib/r.cpp
| D	src/lib/r.h
| A	src/libshogun/base/Parallel.cpp
| A	src/libshogun/base/Parallel.h
| A	src/libshogun/base/SGObject.cpp
| A	src/libshogun/base/SGObject.h
| A	src/libshogun/base/Version.cpp
| A	src/libshogun/base/Version.h
| A	src/libshogun/classifier/Classifier.cpp
| A	src/libshogun/classifier/Classifier.doxy
| A	src/libshogun/classifier/Classifier.h
| A	src/libshogun/classifier/KNN.cpp
| A	src/libshogun/classifier/KNN.h
| A	src/libshogun/classifier/KernelPerceptron.cpp
| A	src/libshogun/classifier/KernelPerceptron.h
| A	src/libshogun/classifier/LDA.cpp
| A	src/libshogun/classifier/LDA.h
| A	src/libshogun/classifier/LPBoost.cpp
| A	src/libshogun/classifier/LPBoost.h
| A	src/libshogun/classifier/LPM.cpp
| A	src/libshogun/classifier/LPM.h
| A	src/libshogun/classifier/LinearClassifier.cpp
| A	src/libshogun/classifier/LinearClassifier.h
| A	src/libshogun/classifier/Perceptron.cpp
| A	src/libshogun/classifier/Perceptron.h
| A	src/libshogun/classifier/PluginEstimate.cpp
| A	src/libshogun/classifier/PluginEstimate.h
| A	src/libshogun/classifier/SubGradientLPM.cpp
| A	src/libshogun/classifier/SubGradientLPM.h
| A	src/libshogun/classifier/__init__.py
| A	src/libshogun/classifier/svm/CPLEXSVM.cpp
| A	src/libshogun/classifier/svm/CPLEXSVM.h
| A	src/libshogun/classifier/svm/GMNPSVM.cpp
| A	src/libshogun/classifier/svm/GMNPSVM.h
| A	src/libshogun/classifier/svm/GMNPSVM.i
| A	src/libshogun/classifier/svm/GNPPSVM.cpp
| A	src/libshogun/classifier/svm/GNPPSVM.h
| A	src/libshogun/classifier/svm/GNPPSVM.i
| A	src/libshogun/classifier/svm/GPBTSVM.cpp
| A	src/libshogun/classifier/svm/GPBTSVM.h
| A	src/libshogun/classifier/svm/GPBTSVM.i
| A	src/libshogun/classifier/svm/LibLinear.cpp
| A	src/libshogun/classifier/svm/LibLinear.h
| A	src/libshogun/classifier/svm/LibLinear.i
| A	src/libshogun/classifier/svm/LibSVM.cpp
| A	src/libshogun/classifier/svm/LibSVM.h
| A	src/libshogun/classifier/svm/LibSVM.i
| A	src/libshogun/classifier/svm/LibSVMMultiClass.cpp
| A	src/libshogun/classifier/svm/LibSVMMultiClass.h
| A	src/libshogun/classifier/svm/LibSVMMultiClass.i
| A	src/libshogun/classifier/svm/LibSVMOneClass.cpp
| A	src/libshogun/classifier/svm/LibSVMOneClass.h
| A	src/libshogun/classifier/svm/LibSVMOneClass.i
| A	src/libshogun/classifier/svm/MPDSVM.cpp
| A	src/libshogun/classifier/svm/MPDSVM.h
| A	src/libshogun/classifier/svm/MPDSVM.i
| A	src/libshogun/classifier/svm/MultiClassSVM.cpp
| A	src/libshogun/classifier/svm/MultiClassSVM.h
| A	src/libshogun/classifier/svm/MultiClassSVM.i
| A	src/libshogun/classifier/svm/SVM.cpp
| A	src/libshogun/classifier/svm/SVM.h
| A	src/libshogun/classifier/svm/SVM.i
| A	src/libshogun/classifier/svm/SVMLin.cpp
| A	src/libshogun/classifier/svm/SVMLin.h
| A	src/libshogun/classifier/svm/SVMLin.i
| A	src/libshogun/classifier/svm/SVMOcas.cpp
| A	src/libshogun/classifier/svm/SVMOcas.h
| A	src/libshogun/classifier/svm/SVMOcas.i
| A	src/libshogun/classifier/svm/SVMSGD.cpp
| A	src/libshogun/classifier/svm/SVMSGD.h
| A	src/libshogun/classifier/svm/SVMSGD.i
| A	src/libshogun/classifier/svm/SVM_libsvm.cpp
| A	src/libshogun/classifier/svm/SVM_libsvm.h
| A	src/libshogun/classifier/svm/SVM_light.cpp
| A	src/libshogun/classifier/svm/SVM_light.h
| A	src/libshogun/classifier/svm/SVM_light.i
| A	src/libshogun/classifier/svm/SVM_linear.cpp
| A	src/libshogun/classifier/svm/SVM_linear.h
| A	src/libshogun/classifier/svm/SubGradientSVM.cpp
| A	src/libshogun/classifier/svm/SubGradientSVM.h
| A	src/libshogun/classifier/svm/SubGradientSVM.i
| A	src/libshogun/classifier/svm/Tron.cpp
| A	src/libshogun/classifier/svm/Tron.h
| A	src/libshogun/classifier/svm/WDSVMOcas.cpp
| A	src/libshogun/classifier/svm/WDSVMOcas.h
| A	src/libshogun/classifier/svm/WDSVMOcas.i
| A	src/libshogun/classifier/svm/__init__.py
| A	src/libshogun/classifier/svm/gmnplib.cpp
| A	src/libshogun/classifier/svm/gmnplib.h
| A	src/libshogun/classifier/svm/gmnpmkl.cpp
| A	src/libshogun/classifier/svm/gmnpmkl.h
| A	src/libshogun/classifier/svm/gnpplib.cpp
| A	src/libshogun/classifier/svm/gnpplib.h
| A	src/libshogun/classifier/svm/gpdt.cpp
| A	src/libshogun/classifier/svm/gpdt.h
| A	src/libshogun/classifier/svm/gpdtsolve.cpp
| A	src/libshogun/classifier/svm/gpdtsolve.h
| A	src/libshogun/classifier/svm/gpm.cpp
| A	src/libshogun/classifier/svm/gpm.h
| A	src/libshogun/classifier/svm/libocas.cpp
| A	src/libshogun/classifier/svm/libocas.h
| A	src/libshogun/classifier/svm/libocas_common.h
| A	src/libshogun/classifier/svm/pr_loqo.cpp
| A	src/libshogun/classifier/svm/pr_loqo.h
| A	src/libshogun/classifier/svm/qpbsvmlib.cpp
| A	src/libshogun/classifier/svm/qpbsvmlib.h
| A	src/libshogun/classifier/svm/qpssvmlib.cpp
| A	src/libshogun/classifier/svm/qpssvmlib.h
| A	src/libshogun/classifier/svm/ssl.cpp
| A	src/libshogun/classifier/svm/ssl.h
| A	src/libshogun/clustering/Clustering.doxy
| A	src/libshogun/clustering/Hierarchical.cpp
| A	src/libshogun/clustering/Hierarchical.h
| A	src/libshogun/clustering/KMeans.cpp
| A	src/libshogun/clustering/KMeans.h
| A	src/libshogun/distance/BrayCurtisDistance.cpp
| A	src/libshogun/distance/BrayCurtisDistance.h
| A	src/libshogun/distance/CanberraMetric.cpp
| A	src/libshogun/distance/CanberraMetric.h
| A	src/libshogun/distance/CanberraWordDistance.cpp
| A	src/libshogun/distance/CanberraWordDistance.h
| A	src/libshogun/distance/ChebyshewMetric.cpp
| A	src/libshogun/distance/ChebyshewMetric.h
| A	src/libshogun/distance/ChiSquareDistance.cpp
| A	src/libshogun/distance/ChiSquareDistance.h
| A	src/libshogun/distance/CosineDistance.cpp
| A	src/libshogun/distance/CosineDistance.h
| A	src/libshogun/distance/Distance.cpp
| A	src/libshogun/distance/Distance.doxy
| A	src/libshogun/distance/Distance.h
| A	src/libshogun/distance/DistanceMachine.cpp
| A	src/libshogun/distance/DistanceMachine.h
| A	src/libshogun/distance/EuclidianDistance.cpp
| A	src/libshogun/distance/EuclidianDistance.h
| A	src/libshogun/distance/GeodesicMetric.cpp
| A	src/libshogun/distance/GeodesicMetric.h
| A	src/libshogun/distance/HammingWordDistance.cpp
| A	src/libshogun/distance/HammingWordDistance.h
| A	src/libshogun/distance/JensenMetric.cpp
| A	src/libshogun/distance/JensenMetric.h
| A	src/libshogun/distance/ManhattanMetric.cpp
| A	src/libshogun/distance/ManhattanMetric.h
| A	src/libshogun/distance/ManhattanWordDistance.cpp
| A	src/libshogun/distance/ManhattanWordDistance.h
| A	src/libshogun/distance/MinkowskiMetric.cpp
| A	src/libshogun/distance/MinkowskiMetric.h
| A	src/libshogun/distance/RealDistance.h
| A	src/libshogun/distance/SimpleDistance.h
| A	src/libshogun/distance/SparseDistance.h
| A	src/libshogun/distance/SparseEuclidianDistance.cpp
| A	src/libshogun/distance/SparseEuclidianDistance.h
| A	src/libshogun/distance/StringDistance.h
| A	src/libshogun/distance/TanimotoDistance.cpp
| A	src/libshogun/distance/TanimotoDistance.h
| A	src/libshogun/distributions/Distribution.cpp
| A	src/libshogun/distributions/Distribution.doxy
| A	src/libshogun/distributions/Distribution.h
| A	src/libshogun/distributions/histogram/Histogram.cpp
| A	src/libshogun/distributions/histogram/Histogram.h
| A	src/libshogun/distributions/histogram/Histogram.i
| A	src/libshogun/distributions/hmm/GHMM.cpp
| A	src/libshogun/distributions/hmm/GHMM.h
| A	src/libshogun/distributions/hmm/GHMM.i
| A	src/libshogun/distributions/hmm/HMM.cpp
| A	src/libshogun/distributions/hmm/HMM.h
| A	src/libshogun/distributions/hmm/HMM.i
| A	src/libshogun/distributions/hmm/LinearHMM.cpp
| A	src/libshogun/distributions/hmm/LinearHMM.h
| A	src/libshogun/distributions/hmm/LinearHMM.i
| A	src/libshogun/evaluation/Evaluation.doxy
| A	src/libshogun/evaluation/PerformanceMeasures.cpp
| A	src/libshogun/evaluation/PerformanceMeasures.h
| A	src/libshogun/features/Alphabet.cpp
| A	src/libshogun/features/Alphabet.h
| A	src/libshogun/features/ByteFeatures.cpp
| A	src/libshogun/features/ByteFeatures.h
| A	src/libshogun/features/CharFeatures.cpp
| A	src/libshogun/features/CharFeatures.h
| A	src/libshogun/features/CombinedDotFeatures.cpp
| A	src/libshogun/features/CombinedDotFeatures.h
| A	src/libshogun/features/CombinedFeatures.cpp
| A	src/libshogun/features/CombinedFeatures.h
| A	src/libshogun/features/DotFeatures.cpp
| A	src/libshogun/features/DotFeatures.h
| A	src/libshogun/features/DummyFeatures.h
| A	src/libshogun/features/ExplicitSpecFeatures.cpp
| A	src/libshogun/features/ExplicitSpecFeatures.h
| A	src/libshogun/features/FKFeatures.cpp
| A	src/libshogun/features/FKFeatures.h
| A	src/libshogun/features/Features.cpp
| A	src/libshogun/features/Features.doxy
| A	src/libshogun/features/Features.h
| A	src/libshogun/features/ImplicitWeightedSpecFeatures.cpp
| A	src/libshogun/features/ImplicitWeightedSpecFeatures.h
| A	src/libshogun/features/IntFeatures.cpp
| A	src/libshogun/features/IntFeatures.h
| A	src/libshogun/features/Labels.cpp
| A	src/libshogun/features/Labels.h
| A	src/libshogun/features/MindyGramFeatures.cpp
| A	src/libshogun/features/MindyGramFeatures.h
| A	src/libshogun/features/RealFeatures.cpp
| A	src/libshogun/features/RealFeatures.h
| A	src/libshogun/features/RealFileFeatures.cpp
| A	src/libshogun/features/RealFileFeatures.h
| A	src/libshogun/features/ShortFeatures.cpp
| A	src/libshogun/features/ShortFeatures.h
| A	src/libshogun/features/ShortRealFeatures.cpp
| A	src/libshogun/features/ShortRealFeatures.h
| A	src/libshogun/features/SimpleFeatures.h
| A	src/libshogun/features/SparseFeatures.h
| A	src/libshogun/features/StringFeatures.cpp
| A	src/libshogun/features/StringFeatures.h
| A	src/libshogun/features/TOPFeatures.cpp
| A	src/libshogun/features/TOPFeatures.h
| A	src/libshogun/features/WDFeatures.cpp
| A	src/libshogun/features/WDFeatures.h
| A	src/libshogun/features/WordFeatures.cpp
| A	src/libshogun/features/WordFeatures.h
| A	src/libshogun/features/__init__.py
| A	src/libshogun/kernel/AUCKernel.cpp
| A	src/libshogun/kernel/AUCKernel.h
| A	src/libshogun/kernel/AvgDiagKernelNormalizer.h
| A	src/libshogun/kernel/Chi2Kernel.cpp
| A	src/libshogun/kernel/Chi2Kernel.h
| A	src/libshogun/kernel/CombinedKernel.cpp
| A	src/libshogun/kernel/CombinedKernel.h
| A	src/libshogun/kernel/CommUlongStringKernel.cpp
| A	src/libshogun/kernel/CommUlongStringKernel.h
| A	src/libshogun/kernel/CommWordStringKernel.cpp
| A	src/libshogun/kernel/CommWordStringKernel.h
| A	src/libshogun/kernel/ConstKernel.cpp
| A	src/libshogun/kernel/ConstKernel.h
| A	src/libshogun/kernel/CustomKernel.cpp
| A	src/libshogun/kernel/CustomKernel.h
| A	src/libshogun/kernel/DiagKernel.cpp
| A	src/libshogun/kernel/DiagKernel.h
| A	src/libshogun/kernel/DiceKernelNormalizer.h
| A	src/libshogun/kernel/DistanceKernel.cpp
| A	src/libshogun/kernel/DistanceKernel.h
| A	src/libshogun/kernel/FirstElementKernelNormalizer.h
| A	src/libshogun/kernel/FixedDegreeStringKernel.cpp
| A	src/libshogun/kernel/FixedDegreeStringKernel.h
| A	src/libshogun/kernel/GaussianKernel.cpp
| A	src/libshogun/kernel/GaussianKernel.h
| A	src/libshogun/kernel/GaussianShiftKernel.cpp
| A	src/libshogun/kernel/GaussianShiftKernel.h
| A	src/libshogun/kernel/GaussianShortRealKernel.cpp
| A	src/libshogun/kernel/GaussianShortRealKernel.h
| A	src/libshogun/kernel/HistogramWordStringKernel.cpp
| A	src/libshogun/kernel/HistogramWordStringKernel.h
| A	src/libshogun/kernel/IdentityKernelNormalizer.h
| A	src/libshogun/kernel/Kernel.cpp
| A	src/libshogun/kernel/Kernel.doxy
| A	src/libshogun/kernel/Kernel.h
| A	src/libshogun/kernel/KernelMachine.cpp
| A	src/libshogun/kernel/KernelMachine.h
| A	src/libshogun/kernel/KernelNormalizer.h
| A	src/libshogun/kernel/LinearByteKernel.cpp
| A	src/libshogun/kernel/LinearByteKernel.h
| A	src/libshogun/kernel/LinearKernel.cpp
| A	src/libshogun/kernel/LinearKernel.h
| A	src/libshogun/kernel/LinearStringKernel.cpp
| A	src/libshogun/kernel/LinearStringKernel.h
| A	src/libshogun/kernel/LinearWordKernel.cpp
| A	src/libshogun/kernel/LinearWordKernel.h
| A	src/libshogun/kernel/LocalAlignmentStringKernel.cpp
| A	src/libshogun/kernel/LocalAlignmentStringKernel.h
| A	src/libshogun/kernel/LocalityImprovedStringKernel.cpp
| A	src/libshogun/kernel/LocalityImprovedStringKernel.h
| A	src/libshogun/kernel/MatchWordStringKernel.cpp
| A	src/libshogun/kernel/MatchWordStringKernel.h
| A	src/libshogun/kernel/MindyGramKernel.cpp
| A	src/libshogun/kernel/MindyGramKernel.h
| A	src/libshogun/kernel/OligoKernel.cpp
| A	src/libshogun/kernel/OligoKernel.h
| A	src/libshogun/kernel/PolyKernel.cpp
| A	src/libshogun/kernel/PolyKernel.h
| A	src/libshogun/kernel/PolyMatchStringKernel.cpp
| A	src/libshogun/kernel/PolyMatchStringKernel.h
| A	src/libshogun/kernel/PolyMatchWordStringKernel.cpp
| A	src/libshogun/kernel/PolyMatchWordStringKernel.h
| A	src/libshogun/kernel/PyramidChi2.cpp
| A	src/libshogun/kernel/PyramidChi2.h
| A	src/libshogun/kernel/SalzbergWordStringKernel.cpp
| A	src/libshogun/kernel/SalzbergWordStringKernel.h
| A	src/libshogun/kernel/SigmoidKernel.cpp
| A	src/libshogun/kernel/SigmoidKernel.h
| A	src/libshogun/kernel/SimpleKernel.h
| A	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.cpp
| A	src/libshogun/kernel/SimpleLocalityImprovedStringKernel.h
| A	src/libshogun/kernel/SparseGaussianKernel.cpp
| A	src/libshogun/kernel/SparseGaussianKernel.h
| A	src/libshogun/kernel/SparseKernel.h
| A	src/libshogun/kernel/SparseLinearKernel.cpp
| A	src/libshogun/kernel/SparseLinearKernel.h
| A	src/libshogun/kernel/SparsePolyKernel.cpp
| A	src/libshogun/kernel/SparsePolyKernel.h
| A	src/libshogun/kernel/SqrtDiagKernelNormalizer.h
| A	src/libshogun/kernel/StringKernel.h
| A	src/libshogun/kernel/TanimotoKernelNormalizer.h
| A	src/libshogun/kernel/TensorProductPairKernel.cpp
| A	src/libshogun/kernel/TensorProductPairKernel.h
| A	src/libshogun/kernel/WeightedCommWordStringKernel.cpp
| A	src/libshogun/kernel/WeightedCommWordStringKernel.h
| A	src/libshogun/kernel/WeightedDegreePositionStringKernel.cpp
| A	src/libshogun/kernel/WeightedDegreePositionStringKernel.h
| A	src/libshogun/kernel/WeightedDegreeStringKernel.cpp
| A	src/libshogun/kernel/WeightedDegreeStringKernel.h
| A	src/libshogun/kernel/__init__.py
| A	src/libshogun/lib/Array.h
| A	src/libshogun/lib/Array2.h
| A	src/libshogun/lib/Array3.h
| A	src/libshogun/lib/Cache.h
| A	src/libshogun/lib/Cplex.cpp
| A	src/libshogun/lib/Cplex.h
| A	src/libshogun/lib/DynamicArray.h
| A	src/libshogun/lib/File.cpp
| A	src/libshogun/lib/File.h
| A	src/libshogun/lib/Library.doxy
| A	src/libshogun/lib/List.h
| A	src/libshogun/lib/Mathematics.cpp
| A	src/libshogun/lib/Mathematics.h
| A	src/libshogun/lib/ShogunException.cpp
| A	src/libshogun/lib/ShogunException.h
| A	src/libshogun/lib/Signal.cpp
| A	src/libshogun/lib/Signal.h
| A	src/libshogun/lib/SimpleFile.h
| A	src/libshogun/lib/Time.cpp
| A	src/libshogun/lib/Time.h
| A	src/libshogun/lib/Trie.cpp
| A	src/libshogun/lib/Trie.h
| A	src/libshogun/lib/__init__.py
| A	src/libshogun/lib/cmdline.cpp
| A	src/libshogun/lib/common.h
| A	src/libshogun/lib/io.cpp
| A	src/libshogun/lib/io.h
| A	src/libshogun/lib/lapack.cpp
| A	src/libshogun/lib/lapack.h
| A	src/libshogun/lib/matlab.cpp
| A	src/libshogun/lib/matlab.h
| A	src/libshogun/lib/memory.cpp
| A	src/libshogun/lib/memory.h
| A	src/libshogun/lib/octave.cpp
| A	src/libshogun/lib/octave.h
| A	src/libshogun/lib/python.cpp
| A	src/libshogun/lib/python.h
| A	src/libshogun/lib/r.cpp
| A	src/libshogun/lib/r.h
| A	src/libshogun/preproc/LogPlusOne.cpp
| A	src/libshogun/preproc/LogPlusOne.h
| A	src/libshogun/preproc/NormDerivativeLem3.cpp
| A	src/libshogun/preproc/NormDerivativeLem3.h
| A	src/libshogun/preproc/NormOne.cpp
| A	src/libshogun/preproc/NormOne.h
| A	src/libshogun/preproc/PCACut.cpp
| A	src/libshogun/preproc/PCACut.h
| A	src/libshogun/preproc/PreProc.cpp
| A	src/libshogun/preproc/PreProc.doxy
| A	src/libshogun/preproc/PreProc.h
| A	src/libshogun/preproc/PruneVarSubMean.cpp
| A	src/libshogun/preproc/PruneVarSubMean.h
| A	src/libshogun/preproc/SimplePreProc.h
| A	src/libshogun/preproc/SortUlongString.cpp
| A	src/libshogun/preproc/SortUlongString.h
| A	src/libshogun/preproc/SortWordString.cpp
| A	src/libshogun/preproc/SortWordString.h
| A	src/libshogun/preproc/SparsePreProc.h
| A	src/libshogun/preproc/StringPreProc.h
| A	src/libshogun/regression/KRR.cpp
| A	src/libshogun/regression/KRR.h
| A	src/libshogun/regression/Regression.doxy
| A	src/libshogun/regression/Regression.h
| A	src/libshogun/regression/svr/LibSVR.cpp
| A	src/libshogun/regression/svr/LibSVR.h
| A	src/libshogun/regression/svr/LibSVR.i
| A	src/libshogun/regression/svr/SVR_light.cpp
| A	src/libshogun/regression/svr/SVR_light.h
| A	src/libshogun/regression/svr/SVR_light.i
| A	src/libshogun/structure/DynProg.cpp
| A	src/libshogun/structure/DynProg.h
| A	src/libshogun/structure/Plif.cpp
| A	src/libshogun/structure/Plif.h
| A	src/libshogun/structure/PlifArray.cpp
| A	src/libshogun/structure/PlifArray.h
| A	src/libshogun/structure/PlifBase.h
| A	src/libshogun/structure/Structure.doxy
| D	src/preproc/LogPlusOne.cpp
| D	src/preproc/LogPlusOne.h
| D	src/preproc/NormDerivativeLem3.cpp
| D	src/preproc/NormDerivativeLem3.h
| D	src/preproc/NormOne.cpp
| D	src/preproc/NormOne.h
| D	src/preproc/PCACut.cpp
| D	src/preproc/PCACut.h
| D	src/preproc/PreProc.cpp
| D	src/preproc/PreProc.doxy
| D	src/preproc/PreProc.h
| D	src/preproc/PruneVarSubMean.cpp
| D	src/preproc/PruneVarSubMean.h
| D	src/preproc/SimplePreProc.h
| D	src/preproc/SortUlongString.cpp
| D	src/preproc/SortUlongString.h
| D	src/preproc/SortWordString.cpp
| D	src/preproc/SortWordString.h
| D	src/preproc/SparsePreProc.h
| D	src/preproc/StringPreProc.h
| D	src/regression/KRR.cpp
| D	src/regression/KRR.h
| D	src/regression/Regression.doxy
| D	src/regression/Regression.h
| D	src/regression/svr/LibSVR.cpp
| D	src/regression/svr/LibSVR.h
| D	src/regression/svr/LibSVR.i
| D	src/regression/svr/SVR_light.cpp
| D	src/regression/svr/SVR_light.h
| D	src/regression/svr/SVR_light.i
| D	src/structure/DynProg.cpp
| D	src/structure/DynProg.h
| D	src/structure/Plif.cpp
| D	src/structure/Plif.h
| D	src/structure/PlifArray.cpp
| D	src/structure/PlifArray.h
| D	src/structure/PlifBase.h
| D	src/structure/Structure.doxy
|  
* commit f8878979a52e5717cd3ce26e39be80d23a3a0922
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:50:54 2009 +0000
| 
|     begin restructuring of code
| 
| D	src/base/Parallel.i
| D	src/base/SGObject.i
| D	src/base/Version.i
| D	src/classifier/Classifier.i
| D	src/classifier/KNN.i
| D	src/classifier/KernelPerceptron.i
| D	src/classifier/LDA.i
| D	src/classifier/LPBoost.i
| D	src/classifier/LPM.i
| D	src/classifier/LinearClassifier.i
| D	src/classifier/Perceptron.i
| D	src/classifier/PluginEstimate.i
| D	src/classifier/SubGradientLPM.i
| D	src/clustering/Clustering.i
| D	src/clustering/Hierarchical.i
| D	src/clustering/KMeans.i
| D	src/distance/BrayCurtisDistance.i
| D	src/distance/CanberraMetric.i
| D	src/distance/CanberraWordDistance.i
| D	src/distance/ChebyshewMetric.i
| D	src/distance/ChiSquareDistance.i
| D	src/distance/CosineDistance.i
| D	src/distance/Distance.i
| D	src/distance/DistanceMachine.i
| D	src/distance/EuclidianDistance.i
| D	src/distance/GeodesicMetric.i
| D	src/distance/HammingWordDistance.i
| D	src/distance/JensenMetric.i
| D	src/distance/ManhattanMetric.i
| D	src/distance/ManhattanWordDistance.i
| D	src/distance/MinkowskiMetric.i
| D	src/distance/RealDistance.i
| D	src/distance/SimpleDistance.i
| D	src/distance/SparseDistance.i
| D	src/distance/SparseEuclidianDistance.i
| D	src/distance/StringDistance.i
| D	src/distance/TanimotoDistance.i
| D	src/distributions/Distribution.i
| D	src/evaluation/Evaluation.i
| D	src/evaluation/PerformanceMeasures.i
| D	src/features/Alphabet.i
| D	src/features/ByteFeatures.i
| D	src/features/CharFeatures.i
| D	src/features/CombinedDotFeatures.i
| D	src/features/CombinedFeatures.i
| D	src/features/DotFeatures.i
| D	src/features/DummyFeatures.i
| D	src/features/ExplicitSpecFeatures.i
| D	src/features/FKFeatures.i
| D	src/features/Features.i
| D	src/features/ImplicitWeightedSpecFeatures.i
| D	src/features/IntFeatures.i
| D	src/features/Labels.i
| D	src/features/MindyGramFeatures.i
| D	src/features/RealFeatures.i
| D	src/features/RealFileFeatures.i
| D	src/features/ShortFeatures.i
| D	src/features/ShortRealFeatures.i
| D	src/features/SimpleFeatures.i
| D	src/features/SparseFeatures.i
| D	src/features/StringFeatures.i
| D	src/features/TOPFeatures.i
| D	src/features/WDFeatures.i
| D	src/features/WordFeatures.i
| A	src/interfaces/modular/AUCKernel.i
| A	src/interfaces/modular/Alphabet.i
| A	src/interfaces/modular/Array.i
| A	src/interfaces/modular/Array2.i
| A	src/interfaces/modular/Array3.i
| A	src/interfaces/modular/AvgDiagKernelNormalizer.i
| A	src/interfaces/modular/BrayCurtisDistance.i
| A	src/interfaces/modular/ByteFeatures.i
| A	src/interfaces/modular/Cache.i
| A	src/interfaces/modular/CanberraMetric.i
| A	src/interfaces/modular/CanberraWordDistance.i
| A	src/interfaces/modular/CharFeatures.i
| A	src/interfaces/modular/ChebyshewMetric.i
| A	src/interfaces/modular/Chi2Kernel.i
| A	src/interfaces/modular/ChiSquareDistance.i
| A	src/interfaces/modular/Classifier.i
| A	src/interfaces/modular/Clustering.i
| A	src/interfaces/modular/CombinedDotFeatures.i
| A	src/interfaces/modular/CombinedFeatures.i
| A	src/interfaces/modular/CombinedKernel.i
| A	src/interfaces/modular/CommUlongStringKernel.i
| A	src/interfaces/modular/CommWordStringKernel.i
| A	src/interfaces/modular/ConstKernel.i
| A	src/interfaces/modular/CosineDistance.i
| A	src/interfaces/modular/CustomKernel.i
| A	src/interfaces/modular/DiagKernel.i
| A	src/interfaces/modular/DiceKernelNormalizer.i
| A	src/interfaces/modular/Distance.i
| A	src/interfaces/modular/DistanceKernel.i
| A	src/interfaces/modular/DistanceMachine.i
| A	src/interfaces/modular/Distribution.i
| A	src/interfaces/modular/DotFeatures.i
| A	src/interfaces/modular/DummyFeatures.i
| A	src/interfaces/modular/DynProg.i
| A	src/interfaces/modular/DynamicArray.i
| A	src/interfaces/modular/EuclidianDistance.i
| A	src/interfaces/modular/Evaluation.i
| A	src/interfaces/modular/ExplicitSpecFeatures.i
| A	src/interfaces/modular/FKFeatures.i
| A	src/interfaces/modular/Features.i
| A	src/interfaces/modular/File.i
| A	src/interfaces/modular/FixedDegreeStringKernel.i
| A	src/interfaces/modular/GaussianKernel.i
| A	src/interfaces/modular/GaussianShiftKernel.i
| A	src/interfaces/modular/GaussianShortRealKernel.i
| A	src/interfaces/modular/GeodesicMetric.i
| A	src/interfaces/modular/HammingWordDistance.i
| A	src/interfaces/modular/Hierarchical.i
| A	src/interfaces/modular/HistogramWordStringKernel.i
| A	src/interfaces/modular/IdentityKernelNormalizer.i
| A	src/interfaces/modular/ImplicitWeightedSpecFeatures.i
| A	src/interfaces/modular/IntFeatures.i
| A	src/interfaces/modular/JensenMetric.i
| A	src/interfaces/modular/KMeans.i
| A	src/interfaces/modular/KNN.i
| A	src/interfaces/modular/KRR.i
| A	src/interfaces/modular/Kernel.i
| A	src/interfaces/modular/KernelMachine.i
| A	src/interfaces/modular/KernelNormalizer.i
| A	src/interfaces/modular/KernelPerceptron.i
| A	src/interfaces/modular/LDA.i
| A	src/interfaces/modular/LPBoost.i
| A	src/interfaces/modular/LPM.i
| A	src/interfaces/modular/Labels.i
| A	src/interfaces/modular/Library.i
| A	src/interfaces/modular/LinearByteKernel.i
| A	src/interfaces/modular/LinearClassifier.i
| A	src/interfaces/modular/LinearKernel.i
| A	src/interfaces/modular/LinearStringKernel.i
| A	src/interfaces/modular/LinearWordKernel.i
| A	src/interfaces/modular/List.i
| A	src/interfaces/modular/LocalAlignmentStringKernel.i
| A	src/interfaces/modular/LocalityImprovedStringKernel.i
| A	src/interfaces/modular/LogPlusOne.i
| A	src/interfaces/modular/ManhattanMetric.i
| A	src/interfaces/modular/ManhattanWordDistance.i
| A	src/interfaces/modular/MatchWordStringKernel.i
| A	src/interfaces/modular/Mathematics.i
| A	src/interfaces/modular/MindyGramFeatures.i
| A	src/interfaces/modular/MindyGramKernel.i
| A	src/interfaces/modular/MinkowskiMetric.i
| A	src/interfaces/modular/NormDerivativeLem3.i
| A	src/interfaces/modular/NormOne.i
| A	src/interfaces/modular/OligoKernel.i
| A	src/interfaces/modular/PCACut.i
| A	src/interfaces/modular/Parallel.i
| A	src/interfaces/modular/Perceptron.i
| A	src/interfaces/modular/PerformanceMeasures.i
| A	src/interfaces/modular/Plif.i
| A	src/interfaces/modular/PlifArray.i
| A	src/interfaces/modular/PlifBase.i
| A	src/interfaces/modular/PluginEstimate.i
| A	src/interfaces/modular/PolyKernel.i
| A	src/interfaces/modular/PolyMatchStringKernel.i
| A	src/interfaces/modular/PolyMatchWordStringKernel.i
| A	src/interfaces/modular/PreProc.i
| A	src/interfaces/modular/PruneVarSubMean.i
| A	src/interfaces/modular/PyramidChi2.i
| A	src/interfaces/modular/RealDistance.i
| A	src/interfaces/modular/RealFeatures.i
| A	src/interfaces/modular/RealFileFeatures.i
| A	src/interfaces/modular/Regression.i
| A	src/interfaces/modular/SGObject.i
| A	src/interfaces/modular/SalzbergWordStringKernel.i
| A	src/interfaces/modular/ShogunException.i
| A	src/interfaces/modular/ShortFeatures.i
| A	src/interfaces/modular/ShortRealFeatures.i
| A	src/interfaces/modular/SigmoidKernel.i
| A	src/interfaces/modular/Signal.i
| A	src/interfaces/modular/SimpleDistance.i
| A	src/interfaces/modular/SimpleFeatures.i
| A	src/interfaces/modular/SimpleFile.i
| A	src/interfaces/modular/SimpleKernel.i
| A	src/interfaces/modular/SimpleLocalityImprovedStringKernel.i
| A	src/interfaces/modular/SimplePreProc.i
| A	src/interfaces/modular/SortUlongString.i
| A	src/interfaces/modular/SortWordString.i
| A	src/interfaces/modular/SparseDistance.i
| A	src/interfaces/modular/SparseEuclidianDistance.i
| A	src/interfaces/modular/SparseFeatures.i
| A	src/interfaces/modular/SparseGaussianKernel.i
| A	src/interfaces/modular/SparseKernel.i
| A	src/interfaces/modular/SparseLinearKernel.i
| A	src/interfaces/modular/SparsePolyKernel.i
| A	src/interfaces/modular/SparsePreProc.i
| A	src/interfaces/modular/SqrtDiagKernelNormalizer.i
| A	src/interfaces/modular/StringDistance.i
| A	src/interfaces/modular/StringFeatures.i
| A	src/interfaces/modular/StringKernel.i
| A	src/interfaces/modular/StringPreProc.i
| A	src/interfaces/modular/Structure.i
| A	src/interfaces/modular/SubGradientLPM.i
| A	src/interfaces/modular/TOPFeatures.i
| A	src/interfaces/modular/TanimotoDistance.i
| A	src/interfaces/modular/TanimotoKernelNormalizer.i
| A	src/interfaces/modular/TensorProductPairKernel.i
| A	src/interfaces/modular/Time.i
| A	src/interfaces/modular/Trie.i
| A	src/interfaces/modular/Version.i
| A	src/interfaces/modular/WDFeatures.i
| A	src/interfaces/modular/WeightedCommWordStringKernel.i
| A	src/interfaces/modular/WeightedDegreePositionStringKernel.i
| A	src/interfaces/modular/WeightedDegreeStringKernel.i
| A	src/interfaces/modular/WordFeatures.i
| A	src/interfaces/modular/common.i
| A	src/interfaces/modular/io.i
| A	src/interfaces/modular/lapack.i
| A	src/interfaces/modular/octave_typemaps.i
| A	src/interfaces/modular/python_typemaps.i
| A	src/interfaces/modular/r_typemaps.i
| A	src/interfaces/modular/swig_typemaps.i
| D	src/kernel/AUCKernel.i
| D	src/kernel/AvgDiagKernelNormalizer.i
| D	src/kernel/Chi2Kernel.i
| D	src/kernel/CombinedKernel.i
| D	src/kernel/CommUlongStringKernel.i
| D	src/kernel/CommWordStringKernel.i
| D	src/kernel/ConstKernel.i
| D	src/kernel/CustomKernel.i
| D	src/kernel/DiagKernel.i
| D	src/kernel/DiceKernelNormalizer.i
| D	src/kernel/DistanceKernel.i
| D	src/kernel/FixedDegreeStringKernel.i
| D	src/kernel/GaussianKernel.i
| D	src/kernel/GaussianShiftKernel.i
| D	src/kernel/GaussianShortRealKernel.i
| D	src/kernel/HistogramWordStringKernel.i
| D	src/kernel/IdentityKernelNormalizer.i
| D	src/kernel/Kernel.i
| D	src/kernel/KernelMachine.i
| D	src/kernel/KernelNormalizer.i
| D	src/kernel/LinearByteKernel.i
| D	src/kernel/LinearKernel.i
| D	src/kernel/LinearStringKernel.i
| D	src/kernel/LinearWordKernel.i
| D	src/kernel/LocalAlignmentStringKernel.i
| D	src/kernel/LocalityImprovedStringKernel.i
| D	src/kernel/MatchWordStringKernel.i
| D	src/kernel/MindyGramKernel.i
| D	src/kernel/OligoKernel.i
| D	src/kernel/PolyKernel.i
| D	src/kernel/PolyMatchStringKernel.i
| D	src/kernel/PolyMatchWordStringKernel.i
| D	src/kernel/PyramidChi2.i
| D	src/kernel/SalzbergWordStringKernel.i
| D	src/kernel/SigmoidKernel.i
| D	src/kernel/SimpleKernel.i
| D	src/kernel/SimpleLocalityImprovedStringKernel.i
| D	src/kernel/SparseGaussianKernel.i
| D	src/kernel/SparseKernel.i
| D	src/kernel/SparseLinearKernel.i
| D	src/kernel/SparsePolyKernel.i
| D	src/kernel/SqrtDiagKernelNormalizer.i
| D	src/kernel/StringKernel.i
| D	src/kernel/TanimotoKernelNormalizer.i
| D	src/kernel/TensorProductPairKernel.i
| D	src/kernel/WeightedCommWordStringKernel.i
| D	src/kernel/WeightedDegreePositionStringKernel.i
| D	src/kernel/WeightedDegreeStringKernel.i
| D	src/lib/Array.i
| D	src/lib/Array2.i
| D	src/lib/Array3.i
| D	src/lib/Cache.i
| D	src/lib/DynamicArray.i
| D	src/lib/File.i
| D	src/lib/Library.i
| D	src/lib/List.i
| D	src/lib/Mathematics.i
| D	src/lib/ShogunException.i
| D	src/lib/Signal.i
| D	src/lib/SimpleFile.i
| D	src/lib/Time.i
| D	src/lib/Trie.i
| D	src/lib/common.i
| D	src/lib/io.i
| D	src/lib/lapack.i
| D	src/lib/octave_typemaps.i
| D	src/lib/python_typemaps.i
| D	src/lib/r_typemaps.i
| D	src/lib/swig_typemaps.i
| D	src/preproc/LogPlusOne.i
| D	src/preproc/NormDerivativeLem3.i
| D	src/preproc/NormOne.i
| D	src/preproc/PCACut.i
| D	src/preproc/PreProc.i
| D	src/preproc/PruneVarSubMean.i
| D	src/preproc/SimplePreProc.i
| D	src/preproc/SortUlongString.i
| D	src/preproc/SortWordString.i
| D	src/preproc/SparsePreProc.i
| D	src/preproc/StringPreProc.i
| D	src/regression/KRR.i
| D	src/regression/Regression.i
| D	src/structure/DynProg.i
| D	src/structure/Plif.i
| D	src/structure/PlifArray.i
| D	src/structure/PlifBase.i
| D	src/structure/Structure.i
|  
* commit 40bde6a3e59bf2844dc5798ec65714a220f66339
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:42:56 2009 +0000
| 
|     the .i files need <shogun/path/to/file> as they now base on libshogun
| 
| M	src/base/Parallel.i
| M	src/base/SGObject.i
| M	src/base/Version.i
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPBoost.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/classifier/SubGradientLPM.i
| M	src/clustering/Clustering.i
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.i
| M	src/distance/CanberraMetric.i
| M	src/distance/CanberraWordDistance.i
| M	src/distance/ChebyshewMetric.i
| M	src/distance/ChiSquareDistance.i
| M	src/distance/CosineDistance.i
|  
* commit a63b09fc0aaf152855689ef5ab5db0a3dfc6c1ad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 22:41:18 2009 +0000
| 
|     also erase libshogun.a on clean
| 
| M	src/Makefile
|  
* commit 8aa1c8b1ecb6b72449ff624bb8ca518c44d31dd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 1 08:11:34 2009 +0000
| 
|     add get_name function to gmnpmkl wrappers - fixes compilation when glpk is not available
| 
| M	src/classifier/svm/gmnpmkl.h
| M	src/lib/Array.h
|  
* commit d30f8dab9cfb61b04fd86ab78fb77308327a2c35
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 21:39:12 2009 +0000
| 
|     all things except HMM work stably+leak-free in static cmdline if
| 
| M	src/features/CombinedFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
|  
* commit f0f22d47b607edad7d7e8e2d274b614f506b5d6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 21:33:54 2009 +0000
| 
|     fix example
| 
| M	examples/cmdline/all_kernels.sg
|  
* commit 25bdda1253eba108cc6f27ba77ec7d144506f5d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 20:52:03 2009 +0000
| 
|     clustering and distances are now leak free
| 
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.h
| M	src/interface/SGInterface.cpp
|  
* commit fd9e40556347ff4d961a5c75a0256b00bfdbab57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 19:05:17 2009 +0000
| 
|     fixes for many further memory leaks
| 
| M	src/base/SGObject.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/TanimotoDistance.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WDFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.h
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/TensorProductPairKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Cache.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
|  
* commit ef8af7173d51d1b00af54bfc1c82ffb2d5062c48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 14:58:52 2009 +0000
| 
|     fix further memory leaks
| 
| M	src/features/Features.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit 7e7fcadac59c7f18f395548109fc38d970b10b84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 13:47:19 2009 +0000
| 
|     classifier and regression methods are leak free now
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 9d320c541f2b27648af53e99dee021e58976a4ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 09:40:11 2009 +0000
| 
|     fix further leaks in get_classifier
| 
| M	src/classifier/LinearClassifier.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/clustering/Hierarchical.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
|  
* commit db301e7534d41a116be00d774fe7f4712cd75ec0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 08:43:46 2009 +0000
| 
|     fix another leak and get rid of extra svmlight specific prloqo interface files
| 
| D	src/classifier/svm/Optimizer.cpp
| D	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit 8949ae77a6fe4a631ff8babe6e3764344d376a47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 08:15:35 2009 +0000
| 
|     implement basis function get_name() for all SGObject derived objects. this increadibly aids memory leak tracing
| 
| M	src/NEWS
| M	src/base/SGObject.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WDFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.h
| M	src/regression/KRR.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
|  
* commit fb257f397c7c552cd6b3dd19ea6bca32b866c1e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 31 01:28:12 2009 +0000
| 
|     fix many memory leaks and crashers due to missing SG_REF/UNREFs
| 
| M	src/base/SGObject.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/CombinedFeatures.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/lib/List.h
|  
* commit 9e5ce5e70d1c1b1ac6e07b6d88c1e6c884db9cc4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 23:12:49 2009 +0000
| 
|     convert everything from delete to use SG_UNREF
| 
| M	src/base/SGObject.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/guilib/GUITime.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit b562db0da8b874f68ee47f78426ab5505219cb54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 22:48:08 2009 +0000
| 
|     fix uninited refcounts
| 
| M	src/base/Parallel.cpp
| M	src/base/Version.cpp
| M	src/lib/io.cpp
|  
* commit d1e7d0698deccb913f5882d42dc0c737d621ae2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 22:22:23 2009 +0000
| 
|     - convert all classes to use new io -> sg_io /parallel/version global objects
|     - remove all interface specific cruft from anything not under interface / guilib
|     - introduce finite() in lib/Mathematics.h
| 
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/base/Version.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/clustering/KMeans.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/features/DotFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/python.cpp
| M	src/lib/r.h
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
|  
* commit 881593ec000c834c2fbe85769684f9160b277f51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 16:17:10 2009 +0000
| 
|     broken commit DON'T USE
| 
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/io.h
|  
* commit 1db200ae6592816aff1696e09c60c2f16d20d58d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 30 16:02:37 2009 +0000
| 
|     testsuite:
|     - Consistency renaming of a couple of functions in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/clustering.py
| M	testsuite/python-modular/distance.py
| M	testsuite/python-modular/distribution.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
| M	testsuite/python-modular/regression.py
|  
* commit 8dad422522db339be69dbac3bedb986be8861ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:57:27 2009 +0000
| 
|     remove obsolete code
| 
| M	src/structure/Plif.h
|  
* commit 63eef75fc8924cd4b7d02ee662b09ec04e361a83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:56:29 2009 +0000
| 
|     remove obsolete code
| 
| M	src/structure/Plif.cpp
|  
* commit 9981a84bf9e1a8935cf58a43ce7a36b9ee64165d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 12:51:56 2009 +0000
| 
|     This attempts to get rid of the language specific code in lib/io.{h,cpp} and lib/Signal.{cpp,h}.
|     
|     To this end every interface has to define a couple of global functions called
|     sg_print_{message,warning,error} and sg_cancel_computations. The printing
|     functions are called whenever anything is writting to the screen (and don't
|     raise exceptions or anything).
|     
|     The cancel function is called to allow an interface to check for the occurrance
|     of a signal and to set the immediate cancel flag. It will be called from
|     core/busy loops only. This is to fix the varius segmentation faults caused by
|     throwing exceptions within signal handlers (which are illegal - not in the
|     standard).
| 
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| A	src/lib/cmdline.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| A	src/lib/matlab.cpp
| A	src/lib/octave.cpp
| A	src/lib/python.cpp
| A	src/lib/r.cpp
|  
* commit 3e18365e0239c3baed05f435670b7510a1426dc3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 09:14:37 2009 +0000
| 
|     on make install don't install gui/interface headers for libshogun
| 
| M	src/Makefile
|  
* commit 517728894e95f78d19e6621c36b875432735d3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 30 07:53:43 2009 +0000
| 
|     trap a division by zero
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 4a2327db222763c04de9dd3d4d8d0202fd5dc347
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 29 15:35:39 2009 +0000
| 
|     testsuite:
|     - README how to extend testsuite, part II, attempt 1.
| 
| M	testsuite/README
|  
* commit 5f9fcc371667f65346881cfeb970e433729fcb77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 29 07:13:34 2009 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 559fab66f34f13801ebfb06f4f312bc4b462dbe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 23:47:08 2009 +0000
| 
|     potentially fix the same things for WDSVMOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit da0ba57b5f42ba169c6f3d76b447913f0159ecf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 23:38:25 2009 +0000
| 
|     bias finally works for svmocas
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit 6153e5b6c79013853d17c009a5603e1f40561e7a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 22:23:11 2009 +0000
| 
|     testsuite:
|     - Added README how to use and extend the testsuite, part I, attempt 1.
| 
| A	testsuite/README
|  
* commit 36b82dbeed96415560badf208b0e6eb09424a3d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 21:38:39 2009 +0000
| 
|     testsuite:
|     - Renamed python-specific term 'module' to testsuite-specific term 'category'.
| 
| M	testsuite/generator/__init__.py
|  
* commit 82af766a5ffe1ee5435086dfe9f8318836b561a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 20:07:31 2009 +0000
| 
|     testsuite:
|     - Added datafiles for WDFeatures on SVMOcas.
| 
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_0017_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_0017_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_023_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_15_1en05_1_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_16_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_16_RAWDNA_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1en05_1_False.m
| A	testsuite/data/classifier/SVMOcas_30_1en05_1_RAWDNA_1_False.m
|  
* commit 7abd7d9c2b8692ec957f615a2ff94d5c56ad6781
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 28 20:05:08 2009 +0000
| 
|     testsuite:
|     - Added WDFeatures to SVMOcas in modular interfaces.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/featop.py
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/python-modular/util.py
| M	testsuite/r-modular/test_one.R
| M	testsuite/r-modular/util/get_features.R
|  
* commit 6122c6ad36458756051b747379124a46035097f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 17:29:49 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 8f0676119e39b9398f049a7555093d871c79bb9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:43:05 2009 +0000
| 
|     compile fix
| 
| M	src/features/DotFeatures.cpp
|  
* commit 235c3a916ab21808b85000c4c054581e4dcf4233
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:38:54 2009 +0000
| 
|     impl. method to obtain feature space
| 
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| M	src/features/DotFeatures.i
|  
* commit 8ca4c9c3f9f1635f6fba119c8acd5a0604f2c0f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:21:47 2009 +0000
| 
|     fix same bug also in implicit wd spec features
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
|  
* commit ac2d3c4e976caa2527871642dde6aae9d66dd6d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 16:19:40 2009 +0000
| 
|     fix crasher in WDFeatures and error: use from_degree again
| 
| M	src/features/WDFeatures.cpp
|  
* commit b51bcc825244f719c38b15d49a6cbc43f64fd1c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:54:43 2009 +0000
| 
|     compile fixes related to ocas + bias
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 7817a7e120c2b293458aeb2613bd58fb8d68d6f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:37:32 2009 +0000
| 
|     bias 4
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit d1bb38aa5421f80c852cf410c351e41d3865da14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:30:37 2009 +0000
| 
|     bias 3
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit e49bd2af6bc177562a98f9feeb56aa2f6a72c0f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:28:02 2009 +0000
| 
|     bias 2
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit 903efe1f304c50929006c89422d5686e5c20aff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:20:48 2009 +0000
| 
|     bias 1
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 9e64e094b80d349e43a8e0e310463efbebcf1294
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 15:01:32 2009 +0000
| 
|     rename classes to remove C prefix
| 
| M	src/features/CombinedDotFeatures.i
| M	src/features/DotFeatures.i
| M	src/features/ExplicitSpecFeatures.i
| M	src/features/ImplicitWeightedSpecFeatures.i
| M	src/features/WDFeatures.i
|  
* commit 28e723053911b836d6b473f8ba06c9451ba5d4fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:46:17 2009 +0000
| 
|     get printing functions right
| 
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
|  
* commit a3e58a86d760685ca4e6c758b33efcec65f62a27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:39:34 2009 +0000
| 
|     remove all printf based functions and replace them with appropriate SG_PRINT functions
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/Trie.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 1622214952b473578f69a39a882ec182471f67d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 14:05:53 2009 +0000
| 
|     potential compile fix
| 
| M	src/classifier/svm/gmnpmkl.h
|  
* commit d7c7f6f0ad24cbc9e8b254163ead7985e2e761fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 11:10:32 2009 +0000
| 
|     minor cleanup
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
|  
* commit 76e09046c89679dd46562d1da20e056cf20aa9c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:46:24 2009 +0000
| 
|     fix isntall/readme
| 
| M	src/INSTALL
| M	src/README
|  
* commit 698429eabc09c239ef80ef9e26c16336c7e09470
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:36:11 2009 +0000
| 
|     fix spelling
| 
| A	examples/python/graphical/svm_classification.py
| D	examples/python/graphical/svm_classificaton.py
|  
* commit d02b3a5b6d874fa8f75a331c3af5a4b1e4865101
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:06:44 2009 +0000
| 
|     don't use too many examples
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit d765766cf577fde89b58aafb899c45f7e7c144e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 28 09:04:50 2009 +0000
| 
|     use dual simplex/presolving and fix a memleak and wrong constraint for glpk-mkl
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 921eb37ad93c5b24b699d95200edd53323eca6fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 27 18:32:52 2009 +0000
| 
|     add debug code to figure out what goes wrong when this assertion triggers
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/StringFeatures.h
|  
* commit 3f141923f6e7a118495783ed31a3947294aa8c4e
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Mon Jan 26 18:09:53 2009 +0000
| 
|     fixed a flaw in the demo: now for the testkernel the correct subkernel weights are set wihhc have been
|     learned by the mkl
| 
| M	examples/libshogun/gnmpmkltester.cpp
|  
* commit a53bd1a638eea95eb6caade10fb21d7a76e6e4cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 20:38:08 2009 +0000
| 
|     disable progress output
| 
| M	src/features/DotFeatures.cpp
|  
* commit 72e10e4255c9e52f298fa9e4bb143acdf0ebf8ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 16:27:34 2009 +0000
| 
|     fix tppk bugs
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 80656b20c858ec3c8a6e38d2ba45cdfdafde8f80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 12:32:10 2009 +0000
| 
|     add tppk test script
| 
| A	examples/matlab_and_octave/tests/test_tppk.m
|  
* commit a19530b340ed428de7a701f61fff2844e660ebb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 11:53:28 2009 +0000
| 
|     fix a warning in getsumofsignfreealphas in multiclass MKL, update NEWS
| 
| M	src/NEWS
| M	src/classifier/svm/gmnpmkl.cpp
|  
* commit aa75c6bb959b16fcc3651cd3b747855fe806cedc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 25 11:46:46 2009 +0000
| 
|     implement tppk
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| A	src/kernel/TensorProductPairKernel.cpp
| A	src/kernel/TensorProductPairKernel.h
| A	src/kernel/TensorProductPairKernel.i
|  
* commit 15657b4af69a52a2167bf72935f421137d76b7ee
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Fri Jan 23 21:01:06 2009 +0000
| 
|     moved testing routine from gnmpmkl{.h,.cpp} into examples
| 
| A	examples/libshogun/gnmpmkltester.cpp
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/classifier/svm/gmnpmkl.h
|  
* commit 9c533adf82a707167924ecccff8c528d44fd156f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 23 11:57:51 2009 +0000
| 
|     minor code beatutifications, update NEWS and list of contributors
| 
| M	src/CONTRIBUTIONS
| M	src/NEWS
| M	src/classifier/svm/gmnpmkl.cpp
| M	src/classifier/svm/gmnpmkl.h
|  
* commit 90fd40dc93e572fb0a09c7251604623735cb9f3a
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Thu Jan 22 22:26:04 2009 +0000
| 
|     implemented GLPK-based L1 MKL for the multiclass svm GMNPSVM
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/gmnpmkl.cpp
| A	src/classifier/svm/gmnpmkl.h
|  
* commit beb1127afa9e349561544e6494bda1cbfb615750
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 22 12:33:40 2009 +0000
| 
|     parallel output computation
| 
| M	src/classifier/LinearClassifier.cpp
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
|  
* commit 3885e5d2474c9731fe3d261e2dca97ff859e1a44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 22:51:25 2009 +0000
| 
|     allow getting of subfeature weights
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 0e06fce4c29afa45090590240fb063ffccfe6897
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 19:13:44 2009 +0000
| 
|     let the wd feature space also use sqrt(weights) (to be symmetric and consisten with spec features) and
|     add a weight to each dotfeature object to allow weighting of the subfeatures of a combineddotfeature object
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/DotFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 105b05e34669047f1f4e88169ca392cf6b523e48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 12:52:33 2009 +0000
| 
|     implement normalization support for implicitwspecfeatures and modify weightedcommwords internal representation to be equivalent (breaks code that relies on the normal vector of the weightedcommwordstringkernel - but I guess nothing like this has been spotted in the wild yet)
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit d2e61073946276575e1d9a4dcd2618b682ff25c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 21 07:20:33 2009 +0000
| 
|     now add_todotfeatures works with WD/WSPEC
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit fd408afd3916786a303552349b2897bf33ea8abe
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:52:32 2009 +0000
| 
|     * disabled a few checks for set_WD_postion_weights_lhs and _rhs.
|     * now check whether lhs==rhs, and if so, then use position_weights_lhs instead of _rhs.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit df32b5b76e6ee53959477a183d4a1054dfa9b751
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:51:02 2009 +0000
| 
|     Don't understand the logic for set_WD_position_weights .. did not work for me.. fiddled around, but did not change anything
| 
| M	src/interface/SGInterface.cpp
|  
* commit 05b67c3d1057547463414b53d2c01a352d4f1f32
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:48:18 2009 +0000
| 
|     abstract print function
| 
| M	src/structure/PlifBase.h
|  
* commit e605ae2ae9995327ffce33b091f340c7c6664a92
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:47:54 2009 +0000
| 
|     print function
| 
| M	src/structure/Plif.h
|  
* commit ef3c5454915264293ed07ea4606e407f0fc8f170
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jan 20 20:47:36 2009 +0000
| 
| M	src/structure/PlifArray.h
|  
* commit 51b82e60dbe3c97ee1afdca4f7f7b8e001c3255d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Jan 20 15:22:48 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 3ba5413de98eb09fce36c98b9a1bf590a7df584b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 14:27:05 2009 +0000
| 
|     fix reading in string features < 1MB in size
| 
| M	src/features/StringFeatures.h
|  
* commit 4e4b833e8d04af2e39fecda257fe76eddb6c1513
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 12:50:59 2009 +0000
| 
|     change syntax to allow diverse features to be created from strings
| 
| M	examples/matlab_and_octave/wd_and_dot_features.m
| M	examples/matlab_and_octave/weighted_spec_features.m
| M	src/INSTALL
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 06b56406f9ac192943b60aef2fd8cd9b30108a6b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 08:53:29 2009 +0000
| 
|     compile fix
| 
| M	src/classifier/svm/SVM_light.h
|  
* commit ae8edbe353b828600f2cbf147fb393dfc874a4c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 08:24:31 2009 +0000
| 
|     update glpk detection (include term_out test)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
|  
* commit 15840b43d7017766d5bfefab206d0e0ca6f2144d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 07:45:02 2009 +0000
| 
|     add examples on how to use dot features
| 
| A	examples/matlab_and_octave/wd_and_dot_features.m
| A	examples/matlab_and_octave/weighted_spec_features.m
|  
* commit 5fe900c64272a0a6de5b4d2ead53d1bb82d19f80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 20 07:33:10 2009 +0000
| 
|     weighted spectrum features work now :)
| 
| M	src/NEWS
| M	src/features/ExplicitSpecFeatures.h
| M	src/features/Features.h
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/ImplicitWeightedSpecFeatures.h
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit a6f4a63bfd0ccf73d2dd1dbd02c7827e27920a66
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Mon Jan 19 21:22:34 2009 +0000
| 
|     implemented Newton chunking MKL for q>1
|     seems to run stably and fast
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit f74703b8f590accda83c070301b6889702853409
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 16:46:39 2009 +0000
| 
|     WDFeatures do work now :)
| 
| M	src/features/ImplicitWeightedSpecFeatures.cpp
| M	src/features/WDFeatures.cpp
|  
* commit 24e1af1b90bf7b376450e9a4d88af54dc8ef154f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 14:16:14 2009 +0000
| 
|     Impl. of spec features is too memory demanding, rename to ExplicitSpecFeatures
|     and introduce ImplicitWeightedSpecFeatures for weighted spectrum kernel that
|     requires the same inputs as the weightedcommwordkernel but only 2x as much memory (not 2**8 times ...)
| 
| A	src/features/ExplicitSpecFeatures.cpp
| A	src/features/ExplicitSpecFeatures.h
| A	src/features/ExplicitSpecFeatures.i
| M	src/features/Features.i
| A	src/features/ImplicitWeightedSpecFeatures.cpp
| A	src/features/ImplicitWeightedSpecFeatures.h
| A	src/features/ImplicitWeightedSpecFeatures.i
| D	src/features/SpecFeatures.cpp
| D	src/features/SpecFeatures.h
| D	src/features/SpecFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
|  
* commit 56fe0f7d6eef319d6b211f30097f9271b950588f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 11:19:56 2009 +0000
| 
|     support standard spec kernel normalization
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit c33a950908a44437913f18a2ddd9a2b33e7db884
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 19 10:53:50 2009 +0000
| 
|     many (valgrind) fixes all over the place, Specfeatures work reliably now.
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 74cb1e06eb4f518fdc332744c892e06863332d05
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jan 18 12:56:19 2009 +0000
| 
|     combined dot features work correctly now.
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit cda97c644168db5a6e5655993dc6440b08d31037
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 17 11:05:25 2009 +0000
| 
|     implement dense_dot_range and remove the now obsolete function from sparse features - suddenly linear svms work again ;)
| 
| M	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit c6d96d4ea64c7d06da1762d8188d3370d1378d1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:21:56 2009 +0000
| 
|     fix typo in configure, for disable glpk
| 
| M	src/configure
|  
* commit 920c20c15a451fb1fe1cb699a482ea49253e8447
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:20:20 2009 +0000
| 
|     compile fix
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit bc1ecaf0580a07a57200ce4b32b0b3bc914fe51f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 17:10:27 2009 +0000
| 
|     remove some cruft, fix a warning
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/interface/OctaveInterface.cpp
|  
* commit 048b61c02b43e7754ec453a5abef900b02d5bfe2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 14:24:19 2009 +0000
| 
|     write out which solver is taken when (for debugging) and use logsum to stabilize alex's qnorm mkl (doesn't seem to help...)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/lib/Mathematics.h
|  
* commit 2a2e884359fd926265ef50e498f8253e1448e7a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 12:07:11 2009 +0000
| 
|     workaround bug in matlab logicals handling
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 297b1ff3d44965310a5dc6a3c9c042ab3724a1d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:53:59 2009 +0000
| 
|     obtain boolean value for floats for octave too
| 
| M	src/interface/OctaveInterface.cpp
|  
* commit e5f887e33d95cbc35237c3d3d1b482b8b154c47b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:35:53 2009 +0000
| 
|     improve logic when which solver is used, compute obj in glpk based on new betas
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9f11d5a817b922ebe3abc4f56229ffb0e28c3eba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:15:12 2009 +0000
| 
|     fix examples and update NEWS
| 
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	src/NEWS
|  
* commit 75bd427cfd05e559cbaa46292b2c6855c0cecc6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:14:20 2009 +0000
| 
|     fix compilation w/ cplex
| 
| M	src/regression/svr/SVR_light.cpp
|  
* commit ba3bdd229bc86b00558ac617b6be9039df3d1803
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 11:04:20 2009 +0000
| 
|     GLPK support for 1-norm MKL based on code from Chen Guohua
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit d5e95d61d78fb6d92dd0c34522ff48364ee511bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 09:44:23 2009 +0000
| 
|     further remove code duplication
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit f9fcdc5541adc80756e78c1d3e2de7b3a1bdcd7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 16 08:25:22 2009 +0000
| 
|     factor out mkl into separate functions (to avoid code duplication) and use these functions for linadd and vanilla kernels
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/svr/SVR_light.cpp
|  
* commit c46767a0489a5adb483ae648f271af5dc63115c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 21:47:47 2009 +0000
| 
|     this adds an option to select the solver type on the fly (cplex/glpk/internal/auto)
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b1866a1ddc27c6c46d7857c25745de5d2e86cbc0
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:59:30 2009 +0000
| 
|     compiles and works again in slightly more modularized version
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 91b6a8aa7ffac1936c60db9a9cb199ef1a941cd1
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:44:15 2009 +0000
| 
|     fix example
| 
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
|  
* commit 659530140b309ace8b052e030570c436c0efe53d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:32:31 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit f962045836e72afe2ad193090d7a6ea287c0aa0d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 18:25:07 2009 +0000
| 
|     potentially integrate alex's q-norm mkl solver
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 31c1a188a790cb8a772d59c0eee80d547f45ae2f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 18:03:31 2009 +0000
| 
|     magic reordering potentially fixes convergence
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9741e7a047088f3f2d45a4d11d2ca97c922285c6
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Jan 15 18:00:55 2009 +0000
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 7fc68d173f76d892a27467f579961239edae8658
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 15:56:31 2009 +0000
| 
|     with debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a2f16b7758368dd3b957e9100d702383b529ca07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 15:39:02 2009 +0000
| 
|     minor fix
| 
| M	src/features/Features.h
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 50dbb3a210be71826b71f3739b83d46479d1efb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 15 11:44:23 2009 +0000
| 
|     fix copy&paste input corruption bug in octave static and modular interfaces
|     occurring only with int32/int16 matrices/vectors (used in functions such as
|     from_position_list!)
| 
| M	src/interface/OctaveInterface.cpp
| M	src/lib/octave_typemaps.i
|  
* commit f2298f5a8baef76b6b1bf197bc985c281db68f29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 14 22:44:44 2009 +0000
| 
|     minor formatting change
| 
| M	src/configure
|  
* commit 0eb37148c0865327250ad8406691c29f7067387e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 14 18:55:05 2009 +0000
| 
|     potentially complete implementation of WD/SpecFeatures
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
|  
* commit cc928598c374359eae7c3cc95a7e00ac08dba64b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 13 20:55:48 2009 +0000
| 
|     continue on WDFeatures
| 
| M	src/features/DotFeatures.h
| M	src/features/DotFeatures.i
| M	src/features/Features.i
| A	src/features/SpecFeatures.i
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.i
| M	src/guilib/GUIClassifier.cpp
|  
* commit daf6b3a0d726cce2d9edc6e68d5b30a709a84e7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 13 10:59:09 2009 +0000
| 
|     Implement spec features. also as dot features are not really a feature class,
|     but more features with a dot property, start implementing feature
|     properties (similar to kernel properties).
| 
| M	src/distance/Distance.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/SimpleFeatures.h
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/kernel/Kernel.h
| M	src/lib/common.h
|  
* commit 8708e8791f7fcc096da5ad8b370ccde9dfd0e537
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 12 22:42:46 2009 +0000
| 
|     - Updated NEWS.
| 
| M	src/NEWS
|  
* commit b56a81f95e8b5b0be8b4ce0ddfd12292d757d764
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 19:57:26 2009 +0000
| 
|     - fix compilation when cplex is not available
|     - use Math_init_random(as.integer(1.0)) in test r-modular test suite (required for swig 1.3.37)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	testsuite/r-modular/test_one.R
|  
* commit 0bbb5c989e8f1697d18294882828008ec0224c5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:59:49 2009 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 44b465d90046cb12c824875e7c5d7217bc6b399a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:50:13 2009 +0000
| 
|     q-norm mkl for linadd based kernels
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/Mathematics.h
|  
* commit f61328819170950ab0ffd1ce8f10063c36daf164
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 16:05:02 2009 +0000
| 
|     fix convergence criterion, add constraint removal
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 9f7eeb8cfc522a16ad8798cc08ed3c81708a432c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 14:21:37 2009 +0000
| 
|     remove debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit fccb6fa8e9cc79f60bc0af5c26ef401bb81fca58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 12 14:06:31 2009 +0000
| 
|     add q-norm mkl
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/lib/Mathematics.h
|  
* commit 1f7aff92333d50b6dbdad2464e744d86c334a3fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 23:09:13 2009 +0000
| 
|     uint8 should be uint16
| 
| M	src/features/SpecFeatures.cpp
| M	src/features/SpecFeatures.h
|  
* commit fd91cbb23a0874ed5889e51a45c1c26400410cf1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:48:36 2009 +0000
| 
|     testsuite:
|     - Another attempt at getting WDSVMOcas to work. Static interfaces seem
|       troublesome.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/python-modular/util.py
| M	testsuite/python/util.py
|  
* commit 28c14d3437f28c4827d5830e568f61f8a75b141d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:19:10 2009 +0000
| 
|     testsuite:
|     - Data files for WDSVMOcas have changed (and bugger SubGradient).
| 
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| A	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_1_0_False_60_False.m
| D	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_60_False.m
|  
* commit e7089df61e3f27d9b6f6774814dc7491dee1b042
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 18:18:39 2009 +0000
| 
|     testsuite:
|     - Features for WDSVMOcas are created and handled differently now.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/featop.py
|  
* commit 25624be5bb5d3fbaea5c4d52fecd86701a858ece
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 18:01:48 2009 +0000
| 
|     work in progress checkin for wdfeatures/specfeatures
| 
| A	src/features/SpecFeatures.cpp
| A	src/features/SpecFeatures.h
| M	src/features/WDFeatures.cpp
|  
* commit b5e24f0f9079a97c0de80e1517ea0da79ae13ad8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 17:57:05 2009 +0000
| 
|     try to be clever when converting DNA to binary formats and select RAWDNA as target type
| 
| M	src/guilib/GUIFeatures.h
|  
* commit f3333c7c5310628de8b3588bcb2b99f224f2eb5b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 17:34:48 2009 +0000
| 
|     testsuite:
|     - It seems that removal of tube_epsilon in matlab/octave was overlooked in
|       previous check-in.
| 
| M	testsuite/matlab_and_octave/classifier.m
|  
* commit 0f7ddf14c43961a2a24e0ba8d6ef45370153db49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 16:48:23 2009 +0000
| 
|     add support for sg('convert', 'TRAIN', 'STRING', 'CHAR', 'STRING', 'BYTE') and remove some cruft from GUIFeatures
| 
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 277fbe4b3f7d783ad19b0519c8a4f8821fdc14a2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 16:05:57 2009 +0000
| 
|     examples:
|     - Removed tube_epsilon from classifiers.
| 
| M	examples/octave-modular/all_classifier.m
| M	examples/python-modular/all_classifier.py
| M	examples/r-modular/all_classifier.R
|  
* commit a15c0184425f56feb9a286132ce5fdb013a349c3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 16:01:00 2009 +0000
| 
|     testsuite:
|     - Previous commit resulted in changes to data files.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_023_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_15_1en05_1_Linear.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_16_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_16_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_0001_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommUlongString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_0017_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_023_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_15_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_CommWordString_0_3_DNA_30_1_False_60_False.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/GPBTSVM_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/GPBTSVM_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_0001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_16_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_0001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_001_Linear.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_30_1en05_1_Linear.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_0017_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/LibSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/LibSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_Gaussian.m
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| A	testsuite/data/classifier/MPDSVM_023_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_15_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_16_15_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/MPDSVM_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/MPDSVM_30_1en05_1_15_Gaussian.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_0017_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_023_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_023_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_15_1en05_1_Linear.m
| D	testsuite/data/classifier/SVMLight_1en05_0001_CommUlongString_0_3_DNA_30_16_False_60_False.m
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| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_0017_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_023_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_15_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60.m
| D	testsuite/data/classifier/SVMLight_1en05_001_WeightedDegreeString_DNA_30_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommUlongString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_0017_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_023_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_15_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_16_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_CommWordString_0_3_DNA_30_1_False_60_False.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_0017_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_023_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_15_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_16_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_20_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_True_60_DNA_30_1_3_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_0017_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_023_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_15_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_16_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreePositionString_DNA_30_1_20_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_0017_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_023_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_15_1_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_16_3_60_True.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60.m
| A	testsuite/data/classifier/SVMLight_1en05_WeightedDegreeString_DNA_30_1_3_60_True.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_0001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_16_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_0001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_001_Linear.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_0001_Gaussian.m
| D	testsuite/data/classifier/SVMLight_30_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_15_Gaussian.m
| A	testsuite/data/classifier/SVMLight_30_1en05_1_Linear.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
|  
* commit 6ecc29af6a53ea03c7905511513d69396d85db3b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 9 15:57:24 2009 +0000
| 
|     testsuite:
|     - Removed tube_epsilon from classifiers.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/octave-modular/classifier.m
| M	testsuite/python-modular/classifier.py
| M	testsuite/python/classifier.py
| M	testsuite/python/util.py
| M	testsuite/r-modular/classifier.R
| M	testsuite/r/classifier.R
|  
* commit 6fdbe9216308dcfb8afbf376f0d6a98c5689ab03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 15:48:40 2009 +0000
| 
|     enable general norm support - interface side only
| 
| M	src/classifier/svm/SVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 71182a7efce53f1bc9ca5498bd4ee35716fb8f1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 15:47:13 2009 +0000
| 
|     fix crasher with comm* kernel
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit b33589d09bae8158f8238837059d7a0c53015b26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 12:56:03 2009 +0000
| 
|     fix type check, test suite for octave/python-modular runs through, commword kernel fix requires re-generation of test
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit ebb65ba21abad7bb3dcdd48a1a101a4d9e61cbb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 12:18:15 2009 +0000
| 
|     merge SparseLinearClassifier.i into LinearClassifier.i
| 
| M	src/classifier/LinearClassifier.i
|  
* commit a81790c22d9e9fb9137c42df746bdc598dcebca1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 9 11:55:07 2009 +0000
| 
|     Integrate new DotFeatures into existing linear classifiers
| 
| M	src/NEWS
| M	src/classifier/Classifier.i
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| D	src/classifier/SparseLinearClassifier.cpp
| D	src/classifier/SparseLinearClassifier.h
| D	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/configure
| M	src/distributions/hmm/HMM.h
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/CombinedDotFeatures.i
| M	src/features/DotFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/WDFeatures.cpp
| M	src/features/WDFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
| M	src/lib/List.h
|  
* commit 53a718488c4ea0a255398a2b7a248e807da739ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 8 17:40:34 2009 +0000
| 
|     started work on WDFeatures + several bugfixes in combineddotfeatures
| 
| M	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| M	src/features/StringFeatures.h
| A	src/features/WDFeatures.cpp
| A	src/features/WDFeatures.h
| A	src/features/WDFeatures.i
|  
* commit 053bdb4cfc077bdb815efcd6cc02645a48b40950
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 8 14:29:01 2009 +0000
| 
|     Implement combined dot features and dot features for simple and sparse features.
|     
|     This required a hierarchy change: simple and sparse features are now derived
|     from dot features (which in turn derive form features). combined dot features
|     use copy & paste code from combined features to avoid multiple inheritance (bad
|     		bad diamonds, and dynamic_cast<CRealFeatures>(feat) is #$*Y#$%(%Y&!!!)
|     
|     None of this is tested yet. Still TODO:
|     
|     - integrate into linear classfiers/kernels
|     - implement wd/spec features
|     
|     Not compile tested under any except the cmdline interface.
| 
| A	src/features/CombinedDotFeatures.cpp
| M	src/features/CombinedDotFeatures.h
| A	src/features/CombinedDotFeatures.i
| A	src/features/DotFeatures.cpp
| M	src/features/DotFeatures.h
| A	src/features/DotFeatures.i
| M	src/features/Features.h
| M	src/features/Features.i
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/lib/Mathematics.h
|  
* commit 2e5fe2e65cffea6d6936af42a6890d99c8b7e2e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 5 09:44:58 2009 +0000
| 
|     prototyping of new dotfeatures and combineddotfeatures
| 
| A	src/features/CombinedDotFeatures.h
| A	src/features/DotFeatures.h
| M	src/features/Features.h
|  
* commit f2faba15ce2607512e44ae3d3e4d07379ea5afb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 11:16:48 2008 +0000
| 
|     check for SVR before setting tube epsilon
| 
| M	examples/cmdline/all_regression.sg
| M	src/guilib/GUIClassifier.cpp
|  
* commit 316e57b4c88997f30cd5bdcd27f86a1a12d68a1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 11:15:47 2008 +0000
| 
|     don't create the array on the stack
| 
| M	src/structure/DynProg.cpp
|  
* commit a5ad2313db627fe24884641e54c824800b83ca3f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 09:42:56 2008 +0000
| 
|     sign also cmds
| 
| M	src/configure
|  
* commit effc34527cbb6b031b3e21f7d3c2a94327cae073
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 30 09:29:58 2008 +0000
| 
|     add iphone detection in configure / and sign binary
| 
| M	src/Makefile
| M	src/configure
|  
* commit 54790e18e11fa91281ddee349466d621724e144b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 30 08:39:28 2008 +0000
| 
| M	src/base/SGObject.h
| M	src/base/Version.h
|  
* commit 680ca50be0d0f20abbad7a1a71854a28ed726442
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 30 08:35:49 2008 +0000
| 
|     minor change for Mac OS and iPhone OS
| 
| M	src/lib/Mathematics.h
|  
* commit 358f6947a08a76db2330d8c19d36299268b4a1c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 27 21:34:38 2008 +0000
| 
|     remove unused includes, fixes a crasher occurring with long obsolete matlab versions
| 
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
|  
* commit 05526ed37ffc4ada819814a12df7293c6c0173cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 13 08:03:06 2008 +0000
| 
|     build static libshogun.a for libshogun target
| 
| M	src/Makefile
|  
* commit 928c1b20d45902e609e854b0e2bb1bb0ec03c41d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Dec 11 15:12:31 2008 +0000
| 
|     -- changes of structure branche merged back into trunk
|     -- function best_path_call restored
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a6627d431d937eafa69cf0b1104e6464daa5f7a5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:35:22 2008 +0000
| 
|     testsuite:
|     - Added OligoKernel to testers (python testers worked automatically).
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/r-modular/util/get_kernel.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 9bc7fe8625ebc93530104276715967b4d95fc247
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:34:26 2008 +0000
| 
|     testsuite:
|     - Added OligoKernel to generator, including data files.
| 
| A	testsuite/data/kernel/Oligo_DNA_10_3_60_12.m
| A	testsuite/data/kernel/Oligo_DNA_10_4_60_17.m
| M	testsuite/generator/kernel.py
|  
* commit 616c095129fbd4cb9b6058993883ac29bd93a525
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 20:11:52 2008 +0000
| 
|     testsuite:
|     - Implemented a bit of code to skip WDSVMOcas in all interfaces != python.
| 
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/octave-modular/test_one.sh
| M	testsuite/r-modular/test_all.sh
| M	testsuite/r-modular/test_one.sh
| M	testsuite/r/test_all.sh
| M	testsuite/r/test_one.sh
|  
* commit 8eee5e3bc4a5043a73b894f3b762b5d2544456ec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 17:21:54 2008 +0000
| 
|     testsuite:
|     - Added 'support' (conversion from StringChar to StringByte not possible yet)
|       for WDSVMOcas to python static.
| 
| M	testsuite/python/test_one.py
| M	testsuite/python/util.py
|  
* commit 58d40bb94e1a11560dc4933f9e37376d66b05ce9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 9 16:50:28 2008 +0000
| 
|     interface:
|     - Fixed compiling issue on normalization of CommString kernels.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 063d35cdf221b42d9088cc97789a3fc8e0a58993
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:29:33 2008 +0000
| 
|     testsuite:
|     - Added support for WDSVMOcas in tester for python modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit fe3d4350c2b8094e9b8e6f2c9dd55d77de117433
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:28:42 2008 +0000
| 
|     testsuite:
|     - Added data files for WDSVMOcas.
| 
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| A	testsuite/data/classifier/WDSVMOcas_0017_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_023_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_15_1en05_1_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_16_1_RAWDNA_60_False.m
| A	testsuite/data/classifier/WDSVMOcas_30_1en05_1_1_RAWDNA_60_False.m
|  
* commit 636cfae937093c0dd785b76485c6c72d1b8b4c6d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 21:28:10 2008 +0000
| 
|     testsuite:
|     - Included WDSVMOcas in generator (a bit hacky though).
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/fileop.py
|  
* commit c51571f3ff10569c300c152d6c39baa7cad94265
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 8 17:31:39 2008 +0000
| 
|     examples:
|     - Patch for R in swig which removed integer coercion requires the introduction
|       of more coercions into the examples for R modular.
| 
| M	examples/r-modular/all_classifier.R
| M	examples/r-modular/all_clustering.R
| M	examples/r-modular/all_distance.R
| M	examples/r-modular/all_distribution.R
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| M	examples/r-modular/all_regression.R
| M	examples/r-modular/check.sh
|  
* commit 0a82e33bfeca96b06a874ffba6106ad26e026a0c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 8 00:05:33 2008 +0000
| 
|     fix regression for COMM* kernels: normalization argument was ignored
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 697e3ce7dd4dcc8c001a76353c2077b22bd0ac0b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 7 21:26:20 2008 +0000
| 
|     testsuite:
|     - Fixed typo in tester for octave modular.
| 
| M	testsuite/octave-modular/classifier.m
|  
* commit 4174346504e31e559979bf614c8a977777396030
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 7 21:25:46 2008 +0000
| 
|     testsuite:
|     - Added regression and classifier to tests for R modular.
| 
| A	testsuite/r-modular/classifier.R
| M	testsuite/r-modular/regression.R
|  
* commit d43dd69940db164662ffe8ed04349223dd0d9a4a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 5 22:55:24 2008 +0000
| 
|     testsuite:
|     - Added tester for kernel and preproc in R modular.
| 
| M	testsuite/r-modular/clustering.R
| M	testsuite/r-modular/distance.R
| A	testsuite/r-modular/distribution.R
| A	testsuite/r-modular/kernel.R
| A	testsuite/r-modular/preproc.R
| M	testsuite/r-modular/util/check_accuracy.R
| M	testsuite/r-modular/util/get_features.R
| M	testsuite/r-modular/util/get_kernel.R
| A	testsuite/r-modular/util/get_pie.R
| A	testsuite/r-modular/util/get_posneg.R
|  
* commit d23a05d3a0aa5e5597bfcc577a1e29acd02c1fd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 5 08:00:24 2008 +0000
| 
|     hopefully removed all occurences of variable length arrays and log/pow calls
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/libocas_common.h
| M	src/clustering/KMeans.cpp
| M	src/distributions/histogram/Histogram.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
|  
* commit f490d98c5a47fed13e8c78d120915f74df477ca0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 4 20:30:48 2008 +0000
| 
|     testsuite:
|     - Cosmetic fixes to tester for R static.
| 
| M	testsuite/r/util/convert_features_and_add_preproc.R
|  
* commit 0749b2d8e8cec2ab839bd212db4da0e2f92082f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 4 20:29:46 2008 +0000
| 
|     testsuite:
|     - Implemented tester for R modular for distance and clustering.
| 
| A	testsuite/r-modular/clustering.R
| A	testsuite/r-modular/distance.R
| M	testsuite/r-modular/test_one.R
| A	testsuite/r-modular/util/convert_features_and_add_preproc.R
| A	testsuite/r-modular/util/get_distance.R
| A	testsuite/r-modular/util/get_features.R
| A	testsuite/r-modular/util/get_kernel.R
| D	testsuite/r-modular/util/set_distance.R
| D	testsuite/r-modular/util/set_features.R
| D	testsuite/r-modular/util/set_kernel.R
|  
* commit 8786fe7bb92fe8c8a38e2ee6f119860835df2138
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Dec 4 11:03:59 2008 +0000
| 
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
|  
* commit 410ae0fbc2ff166c8d991989938f8026885b4a13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 10:09:58 2008 +0000
| 
|     add missing bracket in front of sum
| 
| M	src/kernel/PolyMatchWordStringKernel.h
|  
* commit 5e9a9dfc781219370573a6ef6c6967094849aee8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 07:24:45 2008 +0000
| 
|     don't use variable length arrays in svmlight
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 75827653102e2234732d8369f8e6fea72a2192e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 4 07:13:21 2008 +0000
| 
|     use C99 variadic macros
| 
| M	src/lib/io.h
|  
* commit f75cce30321b099abe3aa9896f35b563c6465008
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 20:25:44 2008 +0000
| 
|     testsuite:
|     - Fixed the issue with miscalculated distribution HMM in tester for octave
|       modular. Miscalculations within TOP/FK are still a mystery.
| 
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 9e0637c6a6671e38e3448798a11536e1bc46c088
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:55:02 2008 +0000
| 
|     testsuite:
|     - Data files have changed, of course.
| 
| M	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_023_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_15_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_16_0001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_0001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_001_Linear.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_3_1.m
| M	testsuite/data/classifier/LDA_01_1.m
| M	testsuite/data/classifier/LibLinear_0017_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_023_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_15_1en05_1_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_16_True.m
| M	testsuite/data/classifier/LibLinear_30_1en05_1_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/LibSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/MPDSVM_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_0017_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_023_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_023_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_15_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_15_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_16_0001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_16_15_0001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_0001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_001_Linear.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_15_0001_Gaussian.m
| M	testsuite/data/classifier/SVMLight_30_1en05_1_15_001_Gaussian.m
| M	testsuite/data/classifier/SVMLin_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMLin_30_1en05_1_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_023_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_15_1en05_1_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_16_False.m
| M	testsuite/data/classifier/SVMOcas_30_1en05_1_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_023_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_15_1en05_1_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_16_True.m
| M	testsuite/data/classifier/SVMSGD_30_1en05_1_True.m
| M	testsuite/data/classifier/SubGradientSVM_0017_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_023_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_15_1en05_1_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_16_05_False.m
| M	testsuite/data/classifier/SubGradientSVM_30_1en05_1_05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/BrayCurtisDistance_fnord.m
| M	testsuite/data/distance/CanberraMetric_fnord.m
| M	testsuite/data/distance/ChebyshewMetric_fnord.m
| M	testsuite/data/distance/ChiSquareDistance_fnord.m
| M	testsuite/data/distance/CosineDistance_fnord.m
| M	testsuite/data/distance/EuclidianDistance_fnord.m
| M	testsuite/data/distance/GeodesicMetric_fnord.m
| M	testsuite/data/distance/JensenMetric_fnord.m
| M	testsuite/data/distance/ManhattanMetric_fnord.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/data/distance/TanimotoDistance_fnord.m
| M	testsuite/data/kernel/AUC_10_10_Gaussian_17.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_10_230.m
| M	testsuite/data/kernel/Distance_10_CanberraMetric_17.m
| M	testsuite/data/kernel/GaussianShift_10_1_13_2.m
| M	testsuite/data/kernel/Gaussian_10_13.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/Poly_3_10_False.m
| M	testsuite/data/kernel/Poly_3_10_True.m
| M	testsuite/data/kernel/Sigmoid_10_05_07.m
| M	testsuite/data/kernel/Sigmoid_10_11_13.m
| M	testsuite/data/kernel/SparseGaussian_10_17.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/preproc/LogPlusOne_12_Gaussian.m
| M	testsuite/data/preproc/NormOne_12_Gaussian.m
| M	testsuite/data/preproc/PruneVarSubMean_False_12_Gaussian.m
| M	testsuite/data/preproc/PruneVarSubMean_True_12_Gaussian.m
| M	testsuite/data/regression/KRR_16_15_Gaussian_1en05.m
| M	testsuite/data/regression/KRR_1_15_Gaussian_1en05.m
| M	testsuite/data/regression/KRR_1_15_Gaussian_1en06.m
| M	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit 7ab5774b5e0efffd2c8d79fb3738bd8af65f9f64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:53:27 2008 +0000
| 
|     testsuite:
|     - Rounding the randomly generated double precision values, before being used as
|       input data, yields in better results when recalculated in tester. Namely, it
|       fixes a little accuracy issue with SVMOcas in the modular interfaces.
| 
| M	testsuite/generator/dataop.py
|  
* commit 1887fa5178b4e4bccd4e21102ea43f53b70e703e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 2 18:32:00 2008 +0000
| 
|     testsuite:
|     - a first stab at tester for R modular, all defunct.
| 
| A	testsuite/r-modular/regression.R
| M	testsuite/r-modular/test_all.sh
| A	testsuite/r-modular/test_one.R
| A	testsuite/r-modular/test_one.sh
| A	testsuite/r-modular/util/check_accuracy.R
| A	testsuite/r-modular/util/read_mfile.R
| A	testsuite/r-modular/util/set_distance.R
| A	testsuite/r-modular/util/set_features.R
| A	testsuite/r-modular/util/set_kernel.R
| A	testsuite/r-modular/util/tobool.R
|  
* commit dee976b521844d59543b3b430028287d75463124
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:15:21 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for R static to previous changes.
| 
| M	testsuite/r/classifier.R
| M	testsuite/r/clustering.R
| M	testsuite/r/distance.R
| M	testsuite/r/distribution.R
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| M	testsuite/r/regression.R
| M	testsuite/r/test_one.R
| M	testsuite/r/util/convert_features_and_add_preproc.R
| A	testsuite/r/util/fix_normalizer_name_inconsistency.R
| M	testsuite/r/util/set_distance.R
| M	testsuite/r/util/set_features.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 947aed46e23427ea890b50ba543028854cce427f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:14:07 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for octave/matlab static to previous changes.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| D	testsuite/matlab_and_octave/util/fix_normalization_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_normalizer_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 6644362129a36b5ccde64a9e3ac390458cbf5829
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:13:26 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for octave modular to previous changes.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit e16815574283c77f8045d21ff8138c2a86f8919c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:12:18 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for python modular to previous changes.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/clustering.py
| M	testsuite/python-modular/distance.py
| M	testsuite/python-modular/distribution.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
| M	testsuite/python-modular/regression.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit af87a2a4c5f8ba01c9b250832550a972ce1493ff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:10:16 2008 +0000
| 
|     testsuite:
|     - Adjusted tester for python static to previous changes.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
| M	testsuite/python/test_one.py
| M	testsuite/python/util.py
|  
* commit f84ef6777e4a1d12d66aff8d726d65f8358f72bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 23:06:59 2008 +0000
| 
|     testsuite:
|     - Most data files have changed with previous changes to generator.
| 
| A	testsuite/data/classifier/GMNPSVM_0017_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_16.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GMNPSVM_15_1en05_1_15_001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_16_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_0001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_1en05_1_15_001_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
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| A	testsuite/data/regression/LibSVR_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_16_15_Gaussian_00001_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_00001_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_Gaussian_1en05_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_00001_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_Gaussian_1en05_001.m
|  
* commit d7cab53f538759b2220c9a81ea02c155f81cc5a1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 30 22:57:14 2008 +0000
| 
|     testsuite:
|     - Made generator a bit easier to understand and cleaned up a few things. also
|       see issue #38 on tracker.
| 
| A	testsuite/generator/category.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| D	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 458e6019260069aa939ea47ce724afcdb33a3782
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 28 12:46:05 2008 +0000
| 
|     add an option to set wds kernel position weights
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit b6f69d84721b8da36a6d75710e1312c91b44a3ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 07:14:37 2008 +0000
| 
|     better description for wordsize detection
| 
| M	src/configure
|  
* commit 1d6223ce0c2db6a4b7d8bc7eb1a7f458085033cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 07:09:56 2008 +0000
| 
|     detect integer word size
| 
| M	src/configure
|  
* commit c6df6d9e639d9df07f63a856c161de716f263011
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 26 04:27:53 2008 +0000
| 
|     Preparing for new Release shogun_0.6.7
| 
| M	doc/Doxyfile
|  
* commit 384cdac47bb7a92f761d969097de11a58b901e97
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 22:12:04 2008 +0000
| 
|     - Makefile target prepare-release now logs output to stdout and file.
| 
| M	Makefile
|  
* commit 4bd1fedc4235b34db95d0427aebfa6a20f946815
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 21:37:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 11c2b4665fa4b930e3e0342ed95ddb25b3662bf5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:46:18 2008 +0000
| 
|     - Improved handling of ChangeLog creation a little bit.
| 
| M	Makefile
| M	src/ChangeLog
| M	src/Makefile
|  
* commit 2dc446a720ec247347aca569262f8c8f639f85f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:43:34 2008 +0000
| 
|     updated changelog
| 
| M	src/Makefile
|  
* commit 2862c0ae105d6ff5e5c38b1c50069702cf87079c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:42:35 2008 +0000
| 
|     updated changelog
| 
| M	src/Makefile
|  
* commit c24cef4d13d7d7a7a0f33385aaff7d229bad2471
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 20:22:10 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 2b9bd0edb6051adc03486ad87d092125fb71b517
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 18:02:41 2008 +0000
| 
|     testsuite:
|     - Improved robustness in python interfaces when classifier_labeltype does not
|       exist.
|     - Fixed a typo (which seemed to result in a valid operator in R) which
|       calculated alphas wrongly for R static interface.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python/classifier.py
| M	testsuite/r/classifier.R
|  
* commit 6821bcfa9ca95fa9a8ed4c4c0c96c75c3e544701
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 18:01:06 2008 +0000
| 
|     testsuite:
|     - previous changes to generator require an update of the data files.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/GMNPSVM_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/GMNPSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_16_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_0001_1en05_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| A	testsuite/data/classifier/Perceptron_01_1_1000.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_1en05_Gaussian_30_16.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_16_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_0017_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_023_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_15_1_3_DNA_WeightedDegreeString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_20_DNA_WeightedDegreePositionString_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_True_30_1_3_DNA_WeightedDegreeString_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/HistogramWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| M	testsuite/data/kernel/SalzbergWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/preproc/SortUlongString_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 17654b2e03cfe5aa3f830e0872cd53c11762a474
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 17:13:56 2008 +0000
| 
|     - removed immature NEWS items.
| 
| M	src/NEWS
|  
* commit 1792b0dbc5c612ccd7444f201aa3183997856a89
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 25 16:45:42 2008 +0000
| 
|     - updated NEWS in preparation for release 0.6.7.
| 
| M	src/NEWS
|  
* commit 76c235070d5cf3317375282fd6d8be057476b9b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 24 15:21:24 2008 +0000
| 
|     compile fix introduced by an accidentally inserted 'u'
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 2f880f3c74ddd75cfa0b2728eda3dc9a614e205f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Nov 14 08:47:44 2008 +0000
| 
|     removed stderr debug outputs
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit f04c02ad87981a564fcf4ccd4599169976a75515
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Nov 8 16:02:05 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static R interface.
| 
| M	testsuite/r/classifier.R
| M	testsuite/r/regression.R
|  
* commit f78f080da5f75f50f4d52352ef340e026286ab1d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 22:05:13 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for modular octave interface.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/util/globals.m
|  
* commit 7288978e0925ce401b326e42342315c9a3918463
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 21:37:40 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static octave/matlab interface.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit c76c9c750d2e3ae1556ac475940bc49006d50aff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 21:27:29 2008 +0000
| 
|     testsuite:
|     - python keyword 'None' should not appear in classifier test files.
| 
| M	testsuite/generator/classifier.py
|  
* commit 19d2f298be92e15f2e96ccba0c2c01ce8ba583e5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:14:36 2008 +0000
| 
|     testsuite:
|     - Added support for alphas and support vectors in MultiClassSVM in tester
|       for static python interface.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
|  
* commit 4e5a46fe2f5820eefaac3ded270362daa01f563e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:13:22 2008 +0000
| 
|     testsuite:
|     - Implemented changes wrt alpha/support vectors in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/regression.py
|  
* commit 5176ee99d6bd4308488ea71315eee8aae351aa32
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 20:12:43 2008 +0000
| 
|     testsuite:
|     - Generator does not put endless number of lists of alphas and support
|       vectors into test files anymore (in case of MultiClass), but instead builds
|       a sum of alphas and support vectors for comparison on test.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/regression.py
|  
* commit 1227802e0699a008a99e821d52e481dfdbd53dfb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 7 17:22:32 2008 +0000
| 
|     static interface:
|     - Added command GET_NUM_SVMS for usage by MultiClassSVMs.
|     - Extended command GET_SVM by optional index parameter to determine which SVM
|       to get out of MultiClassSVM.
|     classifier:
|     - Fixed a segfault opportunity in MultiClassSVM.
| 
| M	src/classifier/svm/MultiClassSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 6b01451f5297d88ec82c2594892c272a522639e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 6 20:45:55 2008 +0000
| 
|     testsuite:
|     - alphas and support vectors for MultiClassSVMS in tester for python-modular.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python-modular/util.py
|  
* commit 49149ba520ef11c2ee2c267a6b64196a230ac7b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 6 20:44:55 2008 +0000
| 
|     testsuite:
|     - alphas and support vectors are now supported in generator for MultiClass SVMs
|       like LibSVMMultiClass and GMNMPSVM.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/fileop.py
|  
* commit aff1785bb8935f95015cd09497f8f31719d8246a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 23:23:53 2008 +0000
| 
|     testsuite:
|     - Integrated WDSVMOcas into generator.
|     - The way how (RAW)DNA data is created has changed a bit.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit 3e3c07bd43fb7566abdafcb1b73417db867f2f96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 23:22:20 2008 +0000
| 
|     - Made StringBytesFeatures more useable for python-modular.
| 
| M	src/features/StringFeatures.i
| M	src/lib/python_typemaps.i
|  
* commit c4b3f6ee98c86991c5ff28db90149afd764dacf2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 5 17:05:06 2008 +0000
| 
|     - Fixed improper assignment of labels in constructor of WDSVMOcas leading to
|       segfaults on destruction in (python) modular interface.
|     - Made Little documentation improvement and commented unnecessary printing of
|       weight vector.
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 8dcfe06bdf680a756f915aadf36c39adc86cb592
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 3 22:39:58 2008 +0000
| 
|     - Added a default value (of NULL) to argument of WDSVMOcas::classify().
|     - Added a debug print to WDSVMOcas::classify_example().
| 
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit fbe1f72f61254568446afb75170e864eb7391fb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 2 08:22:36 2008 +0000
| 
|     really fix contiguous arrays and also a warning in lib/memory.cpp snprintf %lld requires a long long int argument
| 
| M	src/interface/PythonInterface.cpp
| M	src/lib/memory.cpp
|  
* commit 0eebaf88dfad3541c2c4f88156263b7c311d0811
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 2 08:06:29 2008 +0000
| 
|     potentially better fix, that does not require contiguous vectors
| 
| M	src/interface/PythonInterface.cpp
|  
* commit 9d56cd6fb60eff788620f869d2172a831cb2b05d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 1 23:21:44 2008 +0000
| 
|     move applications one directory up
| 
| M	README
| D	applications/arts/arts.py
| D	applications/arts/convert_artsmat.m
| D	applications/arts/genomic.py
| D	applications/arts/signal_sensor.py
| D	applications/asp/LICENSE
| D	applications/asp/Makefile
| D	applications/asp/NEWS
| D	applications/asp/README
| D	applications/asp/asp
| D	applications/asp/convert_mat.m
| D	applications/asp/dna.fa
| D	applications/asp/genomic.py
| D	applications/asp/model.py
| D	applications/asp/seqdict.py
| D	applications/asp/signal_detectors.py
| D	applications/msplicer/LICENSE
| D	applications/msplicer/Makefile
| D	applications/msplicer/NEWS
| D	applications/msplicer/README
| D	applications/msplicer/content_sensors.py
| D	applications/msplicer/convert_mat.m
| D	applications/msplicer/dna.fa
| D	applications/msplicer/genomic.py
| D	applications/msplicer/model.py
| D	applications/msplicer/msplicer
| D	applications/msplicer/plif.py
| D	applications/msplicer/seqdict.py
| D	applications/msplicer/signal_detectors.py
|  
* commit bc9619c961c020ece1d4269a0c7377bfe8e34bbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 1 23:17:33 2008 +0000
| 
|     test if array/vector is contigous
| 
| M	src/interface/PythonInterface.cpp
|  
* commit f3fdb0d312f959572723d9f6b17cc3160b1a92f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 31 16:39:57 2008 +0000
| 
|     - BIG replacement XIX: polished a few calls to external libraries.
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/preproc/PCACut.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit f19fe65ee6ac21a148e1be2b51891871abb91af6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 31 15:02:21 2008 +0000
| 
|     kernel:
|     - Removed unused method declaration from WeightedDegreeStringKernel.
| 
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit d4be93081b7d91c1e4cfc8512e40ad621ad9b204
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 30 16:16:42 2008 +0000
| 
|     - Updated testsuite generator to reflect changes made to enums in
|       lib/features.
| 
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
|  
* commit d3845733cdd3774ae94e3c31926da58f2d482319
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 22:45:51 2008 +0000
| 
|     - BIG replacement XVIII: Fixed an earlier introduced bug and documented the
|       line of code accordingly.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f22b6cdb099a34c4b6444b651181717125d0ff96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 19:19:56 2008 +0000
| 
|     - BIG replacement XVII: our swig setup needs a bit assistance to recognise
|       the new types.
| 
| M	src/.generate_link_dependencies.py
| M	src/lib/common.i
|  
* commit 9079c68d48adef97228f234bb97e33fa046814c4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 16:11:55 2008 +0000
| 
|     - BIG replacement XVI: fixed bug introduced into OligoKernel.
| 
| M	src/kernel/OligoKernel.cpp
|  
* commit 2b4f230d71a785836758f159751be22aa0017358
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 14:39:48 2008 +0000
| 
|     - BIG replacement XV: sorry, need to concentrate more.
| 
| M	src/lib/common.h
|  
* commit 4f8bf1e748b5fb7bcb5eb917a0e0ded937beaf67
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 29 14:34:57 2008 +0000
| 
|     - BIG replacement XIV: added int8_t ifdef SUNOS
| 
| M	src/lib/common.h
|  
* commit 1f680146c2767c30dd051a8537a630d3c570413b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 22:41:36 2008 +0000
| 
|     kernel:
|     - Fixed compiler warning about missing doc in OligoKernel.
|     - Compile fix to previous change.
| 
| M	src/kernel/OligoKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 0193d7f06e70b397a787e607df2b5f6e3a6ed43c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 22:37:18 2008 +0000
| 
|     kernel:
|     - Eliminated unnecessary variable shortcut in WD kernels.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 6e1bc10baf74db75089a621985dd6beb9c17ffdd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 28 22:23:20 2008 +0000
| 
|     conversion of matlab data for arts
| 
| A	applications/arts/arts.py
| A	applications/arts/convert_artsmat.m
| A	applications/arts/genomic.py
| A	applications/arts/signal_sensor.py
|  
* commit c4743eedc0de59262a952cf3857a15085ed13a72
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 21:56:55 2008 +0000
| 
|     - BIG replacement XIII: double -> float64_t (where (hopefully) appropriate)
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/CosineDistance.cpp
| M	src/distance/Distance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/TanimotoDistance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Alphabet.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIMath.cpp
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
|  
* commit 69afe154eb38c86a03e4d26f70327e1ad16df68b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 28 19:22:40 2008 +0000
| 
|     - BIG replacement XII: DREAL -> float64_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Distance.i
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelNormalizer.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/TanimotoKernelNormalizer.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/Plif.i
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit f38000f2112ae0b64824c869ba5c69016195f934
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 27 21:26:22 2008 +0000
| 
|     - BIG replacement XI: LONGREAL/long double -> float128_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/python_typemaps.i
|  
* commit 585b1c7589de869452a7377b095289ff229281b6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 27 21:11:51 2008 +0000
| 
|     - BIG replacement X: SHORTREAL/float -> float32_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Array.i
| M	src/lib/Array2.h
| M	src/lib/Array2.i
| M	src/lib/Array3.h
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
|  
* commit 55b602519f8d08937697bb96299c1b3901ccc963
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 22:50:20 2008 +0000
| 
|     - BIG replacement IX: short int -> int16_t, long int -> int32_t, unsigned short
|       -> uint16_t, unsigned long -> uint32_t
| 
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/features/StringFeatures.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit b115f53fe79da790ae14aeb6b1793c46bb4240d0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 22:31:22 2008 +0000
| 
|     - BIG replacement VIII: SHORT -> int16_t
| 
| M	src/.scrub_docstrings.py
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Features.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/structure/DynProg.h
|  
* commit 9bc010f7ac7236a42e7cc95868fa2c7b611cbd34
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 21:29:28 2008 +0000
| 
|     - BIG replacement VII: LONG -> int64_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Version.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/distance/Distance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/IntFeatures.cpp
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortRealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIHMM.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/python_typemaps.i
|  
* commit 794bd588f1b533552b5cc5dc3d9302c1f4c8c61c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 20:53:10 2008 +0000
| 
|     - BIG replacement VI: ULONG -> uint64_t; unsigned long long int -> uintmax_t
| 
| M	src/.scrub_docstrings.py
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/SimpleFile.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/memory.cpp
| M	src/lib/python_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
|  
* commit 7d1dcac4f75551d9a2b6a4736f3fc7d07fbeae4b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 26 19:16:10 2008 +0000
| 
|     - BIG replacement V: INT/int -> int32_t/int
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Distance.i
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/CombinedFeatures.h
| M	src/features/DummyFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/IntFeatures.cpp
| M	src/features/IntFeatures.h
| M	src/features/IntFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/AvgDiagKernelNormalizer.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FirstElementKernelNormalizer.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/IdentityKernelNormalizer.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelNormalizer.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/TanimotoKernelNormalizer.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/Array.h
| M	src/lib/Array.i
| M	src/lib/Array2.h
| M	src/lib/Array2.i
| M	src/lib/Array3.h
| M	src/lib/Array3.i
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/matlab.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/Plif.i
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 75a11b04e40a4db14c2015d374b475d443ec3c49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 25 20:53:10 2008 +0000
| 
|     add Nicolas Pinto's swig extension to dummyfeatures
| 
| A	src/features/DummyFeatures.i
| M	src/features/Features.i
|  
* commit 1c5ee039b8dcaeb2204be0599bc7cc4527c65528
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 17:17:06 2008 +0000
| 
|     - BIG replacement IV: UINT -> uint32_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/python_typemaps.i
| M	src/preproc/PCACut.cpp
| M	src/preproc/PruneVarSubMean.cpp
|  
* commit ee2bc50dbfde3201ff137c218c7ff82fbf6df3ce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 16:36:35 2008 +0000
| 
|     - BIG replacement III: WORD -> uint16_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/FKFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/MatchWordStringKernel.cpp
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.cpp
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseKernel.i
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit ffe8562a69ff7408bc4101fbe9d1e8dbc3e042e6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 25 15:38:14 2008 +0000
| 
|     - Fixed wrongly defined uint8_t for SUN OS.
| 
| M	src/lib/common.h
|  
* commit ba70e779f6cb7229f1e66184efbc1e85a62d840a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 22:07:21 2008 +0000
| 
|     - BIG replacement II: BYTE -> uint8_t
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.h
|  
* commit e339e38811219d9477e5b471c8fb2a4408aa9fef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 20:27:13 2008 +0000
| 
|     - BIG replacement I: CHAR -> char
| 
| M	src/.scrub_docstrings.py
| M	src/README.developer
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SimpleDistance.i
| M	src/distance/SparseDistance.h
| M	src/distance/SparseDistance.i
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/StringDistance.i
| M	src/distance/TanimotoDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/IntFeatures.cpp
| M	src/features/IntFeatures.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MatchWordStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordStringKernel.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/SalzbergWordStringKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
| M	src/lib/DynamicArray.i
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/SimpleFile.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SimplePreProc.i
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/StringPreProc.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit a4c75b045445fe5bba9af3afc87feec8343d8b54
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 24 18:47:43 2008 +0000
| 
|     library:
|     - Removed unnecessary P_* typedefs.
| 
| M	src/lib/common.h
|  
* commit 02d22866ecaae69df07d702ec091130fd38c9c3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 24 17:04:02 2008 +0000
| 
|     Integrate Chen Guohua's glpk,lpsolve detection
| 
| M	src/configure
|  
* commit cee74dc4664c33aaac652cc2e315ffe623652ef5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 21 10:47:55 2008 +0000
| 
|     lower loglevel for Choldc failed, matrix not pd message, as we are cleanly dealing with that case anyways
| 
| M	src/classifier/svm/pr_loqo.cpp
|  
* commit 14bcd95efb061db603d83741ce1d8c126b151e7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 20 11:41:32 2008 +0000
| 
|     potential fix for vojtechs multiclass svm as reported by alexander binder
| 
| M	src/classifier/svm/GMNPSVM.cpp
|  
* commit 96e086cd21b0ba255cdcced9b6483ec475639cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:19:14 2008 +0000
| 
|     complete rename
| 
| A	applications/asp/asp
| D	applications/asp/asplicer
|  
* commit 0b5829d919bc0958d17f05e84162558eaef2fd7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:18:15 2008 +0000
| 
|     rename to asp
| 
| A	applications/asp/LICENSE
| A	applications/asp/Makefile
| A	applications/asp/NEWS
| A	applications/asp/README
| A	applications/asp/asplicer
| A	applications/asp/convert_mat.m
| A	applications/asp/dna.fa
| A	applications/asp/genomic.py
| A	applications/asp/model.py
| A	applications/asp/seqdict.py
| A	applications/asp/signal_detectors.py
| D	applications/asplicer/LICENSE
| D	applications/asplicer/Makefile
| D	applications/asplicer/NEWS
| D	applications/asplicer/README
| D	applications/asplicer/asplicer
| D	applications/asplicer/convert_mat.m
| D	applications/asplicer/dna.fa
| D	applications/asplicer/genomic.py
| D	applications/asplicer/model.py
| D	applications/asplicer/seqdict.py
| D	applications/asplicer/signal_detectors.py
|  
* commit 29c041c9c43135ed363ca92897a2e13c381f8fd8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 08:12:31 2008 +0000
| 
|     option for binary dumping of splice preds
| 
| M	applications/asplicer/asplicer
|  
* commit 7904ab525777196201f41947abb0535152089a47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 16 04:51:54 2008 +0000
| 
|     splice predictor standalone tool
| 
| M	applications/asplicer/asplicer
| M	applications/asplicer/convert_mat.m
| M	applications/asplicer/genomic.py
| M	applications/asplicer/model.py
| M	applications/asplicer/signal_detectors.py
|  
* commit 10bf4a15dfe8b65052b67e61f714453eb1bf69c9
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 15 19:12:14 2008 +0000
| 
|     compiles again, but I cannot test it
| 
| M	src/structure/DynProg.cpp
|  
* commit 493f9a4ab369ace2d9a98cc165920c86a6834b0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 15 14:56:07 2008 +0000
| 
|     function best_path_call is broken and needs adjustments to new best_path_trans API
| 
| M	src/structure/DynProg.cpp
|  
* commit d53ec57986f676baf364978c281893c9db283c71
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 14 13:04:21 2008 +0000
| 
|     fix malformed R description
| 
| M	src/.r-install.sh
|  
* commit f93a71071ab7274314ae73d4aeda7e50b55e5e83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 14 09:50:02 2008 +0000
| 
|     move shogun applications into the shogun source tree (which will allow automated tests regarding to detect API breakages)
| 
| A	applications/asplicer/LICENSE
| A	applications/asplicer/Makefile
| A	applications/asplicer/NEWS
| A	applications/asplicer/README
| A	applications/asplicer/asplicer
| A	applications/asplicer/convert_mat.m
| A	applications/asplicer/dna.fa
| A	applications/asplicer/genomic.py
| A	applications/asplicer/model.py
| A	applications/asplicer/seqdict.py
| A	applications/asplicer/signal_detectors.py
| A	applications/msplicer/LICENSE
| A	applications/msplicer/Makefile
| A	applications/msplicer/NEWS
| A	applications/msplicer/README
| A	applications/msplicer/content_sensors.py
| A	applications/msplicer/convert_mat.m
| A	applications/msplicer/dna.fa
| A	applications/msplicer/genomic.py
| A	applications/msplicer/model.py
| A	applications/msplicer/msplicer
| A	applications/msplicer/plif.py
| A	applications/msplicer/seqdict.py
| A	applications/msplicer/signal_detectors.py
|  
* commit d9c6aef264c313b35f3c681acbef38e2c0dc6434
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Oct 13 15:51:29 2008 +0000
| 
|     examples:
|     - Added a little utility library to graphical examples for python static.
| 
| M	examples/python/graphical/svm_classificaton.py
| M	examples/python/graphical/svr_regression.py
| A	examples/python/graphical/util.py
|  
* commit edece96c9fc60b65ebc65873643d964d764f29a3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Oct 12 21:11:13 2008 +0000
| 
|     examples:
|     - Created a little library for graphical examples in python-modular.
| 
| M	examples/python-modular/graphical/all_evaluation.py
| M	examples/python-modular/graphical/krr.py
| M	examples/python-modular/graphical/krr_sinc.py
| M	examples/python-modular/graphical/lda.py
| M	examples/python-modular/graphical/multiple_smvs.py
| M	examples/python-modular/graphical/svm.py
| M	examples/python-modular/graphical/svmlin.py
| M	examples/python-modular/graphical/svr_sinc.py
| M	examples/python-modular/graphical/util.py
|  
* commit 4160c3ab07e619c7959675be9c2bba43b2754179
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:46:15 2008 +0000
| 
|     Preparing for new Release shogun_0.6.6
| 
| M	doc/Doxyfile
|  
* commit fd18e9f7aa0bb1b6db7c17514c07f53704930cb9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:45:53 2008 +0000
| 
|     fix documentation and dos2unix files in distance
| 
| M	doc/Doxyfile
| M	src/NEWS
| M	src/distance/BrayCurtisDistance.cpp
| M	src/distance/BrayCurtisDistance.h
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/ChiSquareDistance.cpp
| M	src/distance/ChiSquareDistance.h
| M	src/distance/CosineDistance.cpp
| M	src/distance/CosineDistance.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/StringDistance.h
| M	src/distance/TanimotoDistance.cpp
| M	src/distance/TanimotoDistance.h
|  
* commit 9dcb2fdae7424aadf428b3014bc44dd6400e05f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 11 05:38:24 2008 +0000
| 
|     - Added 'svn stat' to make target prepare-release.
| 
| M	Makefile
|  
* commit ded8e48b09168df5b21c13bdb0c4636e3b67351b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:24:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 58c8aee9fb431874ab004788e2206e6aa2038411
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:24:07 2008 +0000
| 
|     updated reference documentation
| 
| M	src/ChangeLog
|  
* commit b9b836d228b72c207493f9feefe411d23b112916
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 11 05:22:50 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit d4c9e34f841fe861b9729e34856fe91b5f1910ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 11 05:16:08 2008 +0000
| 
|     - Oopsie, forgot to add regression/Regression.h
| 
| A	src/regression/Regression.h
|  
* commit ba0fb97474b4cd864d7a6dfea62ce6357dc1d35d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 10 20:10:26 2008 +0000
| 
|     Preparing for new Release shogun_0.6.5
| 
| M	Makefile
|  
* commit a5aa1436f01b249d75c18f45f8186f57d6c36bfb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 10 14:34:02 2008 +0000
| 
|     update news
| 
| M	src/NEWS
| M	src/configure
|  
* commit b8f160deed6e69b631c0235f92da13bafb542a0a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 10 14:32:48 2008 +0000
| 
|     Preparing for new Release shogun_0.6.5
| 
| M	doc/Doxyfile
|  
* commit 34ba0d7b027d69e3b04f58d845120f8412b6bfef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Oct 10 14:29:31 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 48053aab365785180e7ce2965d1f0528156c6647
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:19:55 2008 +0000
| 
|     common:
|     - Moved various enums from lib/common.h into more specific header files.
|     - Renamed E_ALPHABET to EAlphabet.
|     - Hence closing issue #65.
| 
| M	examples/python-modular/all_distribution.py
| M	src/classifier/Classifier.h
| M	src/distance/Distance.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/Features.h
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/File.h
| M	src/lib/common.h
| M	src/lib/io.h
| M	src/preproc/PreProc.h
| M	src/regression/KRR.h
| M	src/regression/Regression.i
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit f303d45b2797f072c885639ebc1546b0335c27b6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:18:28 2008 +0000
| 
|     examples:
|     - Fixed wrong kernel usage (POLYMATCH) in matlab/octave and python static.
| 
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/python/all_kernels.py
|  
* commit 562f0da94eac2b6ee13a810e0997c7a50c0f3db3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Oct 8 22:04:10 2008 +0000
| 
|     testsuite:
|     - Test for LinearHMM (or rather its omittance) now succeeds in static R.
| 
| M	testsuite/r/distribution.R
|  
* commit bb29f9ae6ed520981511ff9a46e8c4b32a0094ac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:31:17 2008 +0000
| 
|     testsuite:
|     - Data files have changed/been added.
| 
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/HistogramWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| M	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/SalzbergWordString_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
|  
* commit 20887cc8ad4201b16018bcc8f94de28633b651ad
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:30:32 2008 +0000
| 
|     testsuite:
|     - Reactivated testing for Salzberg/HistogramWordString/PIE and FK/TOP (where
|       applicable).
| 
| M	testsuite/generator/kernel.py
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/python-modular/kernel.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
| M	testsuite/r/util/fix_kernel_name_inconsistency.R
|  
* commit 4cdcb4496a558454af9b5758c11dc04a7524da9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 22:29:06 2008 +0000
| 
|     interface:
|     - Reverted erroneous change to static interface to (POLY)MATCH(WORDSTRING).
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5d7a3f2913de71cf59532d31c5bf836adbdaf03c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:38:32 2008 +0000
| 
|     examples:
|     - Added the 4 new distances to the examples.
| 
| M	examples/cmdline/all_distance.sg
| M	examples/matlab_and_octave/all_distance.m
| M	examples/octave-modular/all_distance.m
| M	examples/python-modular/all_distance.py
| M	examples/python/all_distance.py
| M	examples/r-modular/all_distance.R
| M	examples/r/all_distance.R
|  
* commit 84b1fa00cae0982b9521d33a7130658d729bffd9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:15:25 2008 +0000
| 
|     news:
|     - Updated news about the 4 new distances.
| 
| M	src/NEWS
|  
* commit f7d50e3878f50757cf5638cece4d42ec98f1abdb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:13:02 2008 +0000
| 
|     testsuite:
|     - Integrated the 4 new distances into the testsuite.
| 
| A	testsuite/data/distance/BrayCurtisDistance_fnord.m
| A	testsuite/data/distance/ChiSquareDistance_fnord.m
| A	testsuite/data/distance/CosineDistance_fnord.m
| A	testsuite/data/distance/TanimotoDistance_fnord.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/octave-modular/util/set_distance.m
|  
* commit d9eb9e56cc40d1a410258c647db205aaa79b0b0a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:12:09 2008 +0000
| 
|     distance:
|     - Fixed integration of the 4 new distances into the modular interfaces.
| 
| M	src/distance/ChiSquareDistance.i
| M	src/distance/Distance.i
|  
* commit b29ea598c570bd5af5dbd691af1cfa9170dcb72f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 21:05:23 2008 +0000
| 
|     testsuite:
|     - Fixed broken test for SparseEuclidian distance in static octave/matlab.
| 
| M	testsuite/matlab_and_octave/util/set_distance.m
|  
* commit 211862db7dbb22c4d1dcdaf2c005faf4739815cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 4 20:40:02 2008 +0000
| 
|     documentation:
|     - Fixed compiler warning.
| 
| M	src/kernel/OligoKernel.h
|  
* commit 5366267717357f64664ef13dfe0a4cacaedc47a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:40:06 2008 +0000
| 
|     interface:
|     - Forgot to include changes for Salzberg/HistogramWordString in
|       interface/guilib.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 1c8487d9436856e29e46a650a1eb8b1e98d506e1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:36:11 2008 +0000
| 
|     examples:
|     - Adapted examples for modular R to recent changes.
| 
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| D	examples/r-modular/first_shot.R
| D	examples/r-modular/libsvm.R
|  
* commit 3988fd493c8fc8d54069a77f93da19750a58ad39
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:21:06 2008 +0000
| 
|     examples:
|     - Adapted examples for modular python to recent changes.
| 
| M	examples/python-modular/all_kernels.py
| M	examples/python-modular/all_preproc.py
| M	examples/python-modular/check_commwordkernel_memleak.py
|  
* commit 332796fe6f62fe4ecc2f3a8c4050f7eb0162089c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 19:06:11 2008 +0000
| 
|     examples:
|     - Adapted examples for static python to recent changes.
| 
| M	examples/python/all_kernels.py
| M	examples/python/all_preproc.py
|  
* commit abdbc527d688abfb0d554fc0851114002d09185c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:38:06 2008 +0000
| 
|     examples:
|     - Adapted examples for modular octave to recent changes.
| 
| M	examples/octave-modular/all_kernels.m
| M	examples/octave-modular/all_preproc.m
|  
* commit 0e45ce1b8385c40a2eee23c8de2bc6d1bdb3d104
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:35:37 2008 +0000
| 
|     kernel:
|     - Fixed forgotten renaming of actual class of HistogramWordString and
|       SalzbergWordString.
| 
| M	src/kernel/HistogramWordStringKernel.cpp
| M	src/kernel/HistogramWordStringKernel.h
| M	src/kernel/SalzbergWordStringKernel.cpp
| M	src/kernel/SalzbergWordStringKernel.h
|  
* commit 5a429bccefb439ffba771c513ec7765847bd67e3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:04:50 2008 +0000
| 
|     examples:
|     - Adapted examples for static matlab/octave to recent changes.
| 
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
|  
* commit 5c61643058f8bd3902a8bd4c0f30d50fead0d170
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 18:00:28 2008 +0000
| 
|     testsuite:
|     - Fixed wrong application of strcmp in static matlab/octave.
| 
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 789d77b1b500264264e77b8c4d0eb30f7039f272
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 16:14:41 2008 +0000
| 
|     testsuite:
|     - Adapted static R interface to recent changes.
|     - Added little script that makes executing a single test from the command-line
|       a bit easier.
| 
| A	testsuite/r/test_one.sh
| D	testsuite/r/util/fix_normalization_inconsistency.R
| M	testsuite/r/util/set_kernel.R
|  
* commit 40e275d71ca91eb219d507566f4efb2e67275cf7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 04:02:46 2008 +0000
| 
|     testsuite:
|     - Some cleanup of old testscripts in static octave/matlab tester.
| 
| D	testsuite/matlab_and_octave/WeightedDegreeString.m
| D	testsuite/matlab_and_octave/test_chi2_kernel.m
| D	testsuite/matlab_and_octave/test_cws_kernel.m
| D	testsuite/matlab_and_octave/test_gaussian_kernel.m
| D	testsuite/matlab_and_octave/test_linear_kernel.m
| D	testsuite/matlab_and_octave/test_poly_kernel.m
| D	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| D	testsuite/matlab_and_octave/test_svm.m
| D	testsuite/matlab_and_octave/test_wdchar_kernel.m
| D	testsuite/matlab_and_octave/test_wds_kernel.m
|  
* commit 96d1357e4b2788474ff575df32ce04f285f923ec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Oct 2 00:33:10 2008 +0000
| 
|     testsuite:
|     - Adjusted static octave/matlab tests to recent changes.
| 
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 99699aca9bd38a808a27d369e97a5c6e28b1e0d1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 22:44:28 2008 +0000
| 
|     testsuite:
|     - Implemented recent changes wrt normalizers in tester for octave modular.
| 
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit b4b3217dab1e73182a4514158d846fc8761224b2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 22:43:49 2008 +0000
| 
|     testsuite:
|     - Mixed up inhomogene and use_normalization in SparsePolyKernel.
| 
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/generator/kernel.py
| M	testsuite/python-modular/util.py
|  
* commit bd0cd293bee7e31c6e2f3476207009f8f7c1e771
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 21:41:43 2008 +0000
| 
|     documentation:
|     - Added a few docstrings to silence compilation.
| 
| M	src/features/DummyFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/DiceKernelNormalizer.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/SqrtDiagKernelNormalizer.h
| M	src/kernel/TanimotoKernelNormalizer.h
|  
* commit 0548d3627d4b74162a71373e3240cafaa1b8d1d5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:41:15 2008 +0000
| 
|     testsuite:
|     - Data files have changed after last changes to generator.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/SparseLinear_fnord.m
| M	testsuite/data/kernel/SparsePoly_3_10_False.m
| M	testsuite/data/kernel/SparsePoly_3_10_True.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
|  
* commit a42b21fdc4e7077f10e1d4d2b12fb1c5f6fd10ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:40:34 2008 +0000
| 
|     testsuite:
|     - Modified tester for python modular to properly handle normalizers.
| 
| M	testsuite/python-modular/classifier.py
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/util.py
|  
* commit cc721b19c17377e69963a0f09f666663eb751e27
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 20:39:45 2008 +0000
| 
|     testsuite:
|     - Hopefully added normalizers correctly to the testsuite generator.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
|  
* commit 393dd027aad30f38151c49fa675c1155a28d088f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 16:56:27 2008 +0000
| 
|     interface:
|     - Added missing call to set_normalizer when normalizer == false for
|       PolyMatchWordStringKernel in static interface.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit c34b8c36a7e4aa8ffe898b79233fc1405f0f4d83
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Sep 29 15:26:32 2008 +0000
| 
|     interface:
|     - Extended changes in static interface to Match(Word)String kernels
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
|  
* commit b607129e0cdb24ea6fb5ec670ebf7c6a784795a5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Sep 27 17:26:09 2008 +0000
| 
|     testsuite:
|     - Adapted testsuite generator to removal of preproc SortWord.
| 
| A	testsuite/data/kernel/MatchWordString_60_0_False_3_DNA_3.m
| A	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_False.m
| A	testsuite/data/kernel/PolyMatchWordString_60_0_False_3_DNA_3_True.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/SortWord_3_WordMatch.m
| D	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/python-modular/preproc.py
|  
* commit d173db1d16fc0ee58813f70df02ac02f33afb16a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 19 22:46:53 2008 +0000
| 
|     remove SortWord preproc and rename other string kernels to have WordString suffix
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| D	src/kernel/HistogramWordKernel.cpp
| D	src/kernel/HistogramWordKernel.h
| D	src/kernel/HistogramWordKernel.i
| A	src/kernel/HistogramWordStringKernel.cpp
| A	src/kernel/HistogramWordStringKernel.h
| A	src/kernel/HistogramWordStringKernel.i
| M	src/kernel/Kernel.i
| A	src/kernel/MatchWordStringKernel.cpp
| A	src/kernel/MatchWordStringKernel.h
| A	src/kernel/MatchWordStringKernel.i
| D	src/kernel/PolyMatchWordKernel.cpp
| D	src/kernel/PolyMatchWordKernel.h
| D	src/kernel/PolyMatchWordKernel.i
| A	src/kernel/PolyMatchWordStringKernel.cpp
| A	src/kernel/PolyMatchWordStringKernel.h
| A	src/kernel/PolyMatchWordStringKernel.i
| D	src/kernel/SalzbergWordKernel.cpp
| D	src/kernel/SalzbergWordKernel.h
| D	src/kernel/SalzbergWordKernel.i
| A	src/kernel/SalzbergWordStringKernel.cpp
| A	src/kernel/SalzbergWordStringKernel.h
| A	src/kernel/SalzbergWordStringKernel.i
| D	src/kernel/WordMatchKernel.cpp
| D	src/kernel/WordMatchKernel.h
| D	src/kernel/WordMatchKernel.i
| M	src/lib/common.h
| M	src/preproc/PreProc.i
| D	src/preproc/SortWord.cpp
| D	src/preproc/SortWord.h
| D	src/preproc/SortWord.i
|  
* commit 599d611cff6a225f59435639ae9de49e40bd226a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Sep 19 20:09:16 2008 +0000
| 
|     features:
|     - Implemented get_fm() for WordFeatures.
| 
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit 6b4d8ee53e14d738fa3b59d803be488981fecd6a
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Fri Sep 19 10:58:23 2008 +0000
| 
|     added distances: Bray-Curtis, Chi-Square, Cosine, Tanimoto
| 
| A	src/distance/BrayCurtisDistance.cpp
| A	src/distance/BrayCurtisDistance.h
| A	src/distance/BrayCurtisDistance.i
| M	src/distance/CanberraMetric.h
| M	src/distance/ChebyshewMetric.h
| A	src/distance/ChiSquareDistance.cpp
| A	src/distance/ChiSquareDistance.h
| A	src/distance/ChiSquareDistance.i
| A	src/distance/CosineDistance.cpp
| A	src/distance/CosineDistance.h
| A	src/distance/CosineDistance.i
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/MinkowskiMetric.h
| A	src/distance/TanimotoDistance.cpp
| A	src/distance/TanimotoDistance.h
| A	src/distance/TanimotoDistance.i
| M	src/guilib/GUIDistance.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/common.h
|  
* commit 8dddef8d4547d3412662a0705e3411d8ca1bbe0c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 16 14:14:02 2008 +0000
| 
|     add further kernel normalizers, after reading PyML tutorial
| 
| A	src/kernel/DiceKernelNormalizer.h
| A	src/kernel/DiceKernelNormalizer.i
| A	src/kernel/TanimotoKernelNormalizer.h
| A	src/kernel/TanimotoKernelNormalizer.i
|  
* commit cc374238ec0854ebdc7e57613a20a95038ebd1cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:36:41 2008 +0000
| 
|     testsuite:
|     - Adjusted testing in python to reflect previous changes.
| 
| M	testsuite/python/util.py
|  
* commit 71052511d921b493545750a10ccd168964003f9b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:36:08 2008 +0000
| 
|     testsuite:
|     - Adjusted testing in python-modular to reflect previous changes.
| 
| M	testsuite/python-modular/kernel.py
| M	testsuite/python-modular/preproc.py
|  
* commit aa5e526677272c24f23590a6964e79111e796249
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:34:48 2008 +0000
| 
|     testsuite:
|     - Regenerated data files to reflect previous changes.
| 
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/SVMLight_0001_1en05_Linear_30_16.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_1.m
| D	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| A	testsuite/data/kernel/Combined_3_10_60_LocalAlignmentString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_fnord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparseLinear_fnord.m
| A	testsuite/data/kernel/SparsePoly_3_10_False.m
| A	testsuite/data/kernel/SparsePoly_3_10_True.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| A	testsuite/data/preproc/SortUlongString_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWordString_60_0_False_DNA_CommWordString_3_False.m
| A	testsuite/data/preproc/SortWord_3_WordMatch.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
|  
* commit 68341bdf541fac8856e631f0c5fabe2e84b6c6f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Sep 10 01:33:07 2008 +0000
| 
|     testsuite:
|     - Adjusted generator to respect changes in Linear kernels, normalization and
|       CustomKernel.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
|  
* commit 89f9d8182ce06bccc273604229e96524c30a7500
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 5 17:15:25 2008 +0000
| 
|     add missing file
| 
| A	src/kernel/OligoKernel.i
|  
* commit 46f3ad6b1d16aaea18f7459ad978276840402480
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 1 18:39:53 2008 +0000
| 
|     implement precompute_subkernels
| 
| M	src/NEWS
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
|  
* commit 4e41ab103acf35fe41e967e5a4439d4106ed2049
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 28 17:44:42 2008 +0000
| 
|     Documentation updates for distributions. Implement multiclass svm model saving and loading.
| 
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.h
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
|  
* commit f1812b7120d3951bb163896cf4d58d1facd4cf6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 26 14:26:06 2008 +0000
| 
|     add missing file
| 
| A	src/kernel/FirstElementKernelNormalizer.h
|  
* commit 92786d4386b12deb4716a2cb240b47789f13e11d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 26 14:04:45 2008 +0000
| 
|     Possibly correctly integrate oligo kernel, however I had to fix an array out of bounds read (thanks valgrind) and as the kernel was very diagonally dominant I added SqrtDiag normalization; wrote examples for all interfaces from cmdline to r-modular :)
| 
| M	examples/cmdline/all_kernels.sg
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/octave-modular/all_kernels.m
| M	examples/python-modular/all_kernels.py
| M	examples/python/all_kernels.py
| M	examples/r-modular/all_kernels.R
| M	examples/r/all_kernels.R
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/OligoKernel.cpp
| M	src/kernel/OligoKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit a168fadb9caf806ca56713a30e1026e38eabd64f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 24 18:03:10 2008 +0000
| 
|     - implement proper kernel normalisation
|     - remove requirement to set features to custom kernel
|     - fix buggy normalization in wds kernel
| 
| M	doc/Doxyfile
| M	examples/cmdline/all_classifier.sg
| M	src/NEWS
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| A	src/features/DummyFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/AUCKernel.cpp
| A	src/kernel/AvgDiagKernelNormalizer.h
| A	src/kernel/AvgDiagKernelNormalizer.i
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| A	src/kernel/IdentityKernelNormalizer.h
| A	src/kernel/IdentityKernelNormalizer.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| A	src/kernel/KernelNormalizer.h
| A	src/kernel/KernelNormalizer.i
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| A	src/kernel/SqrtDiagKernelNormalizer.h
| A	src/kernel/SqrtDiagKernelNormalizer.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 13dc3647bd4d1e070fab0713857b3c9c4b49ad37
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 18 21:36:51 2008 +0000
| 
|     potentially fix mkl detection
| 
| M	src/configure
|  
* commit 1da0591634e6edc059eb32b233c47e02be6cd1f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 17 07:02:45 2008 +0000
| 
|     fix transpose
| 
| M	src/lib/File.cpp
| M	src/lib/Mathematics.h
|  
* commit 780cf2c834ce97da52dfebd2dc4872b7118a0d88
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 17 00:37:08 2008 +0000
| 
|     testsuite:
|     - Changed order of output of radi/centers in R, octave, matlab to match order
|       in python.
| 
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/r/clustering.R
| M	testsuite/r/util/check_accuracy.R
|  
* commit 83a4cff2ced80d948bf333b2398e19e6c3a528ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 16 07:41:26 2008 +0000
| 
|     adjust makefile
| 
| M	src/Makefile
|  
* commit 51edc7816dfd578e3deb32e1a241c54bdc5756c4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 16 07:41:07 2008 +0000
| 
|     - compile fix when lapack/atlas is not available
|     - don't check .config for interface when running tests but use argument
| 
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 4ed135ec3d265390e32f511e715c2df565cfca40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:52:19 2008 +0000
| 
|     new svn version seem broken when using svn cp with WC WC
| 
| M	Makefile
|  
* commit bb9afe025bc9464df199bceb7078bac7ab621a72
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:48:03 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit b1c6f2ccf474a6762eb2503e075be9fc53be93a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:41:17 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 5695e0a343f539ea9c4beff49ddb72a8d688ec4c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:40:27 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 192e7c5a3338a9f642f76a3671fe09af244545b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:39:20 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	Makefile
|  
* commit 9f41b32e621a27bdf604908913cda61ecbd7a815
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:24:05 2008 +0000
| 
|     Preparing for new Release shogun_0.6.4
| 
| M	doc/Doxyfile
|  
* commit d8926c06fa54a23610f40bf263c4f1c5b2bbefea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 16:22:14 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 1824048f1826c45618f5b9b883e7b839e65ac7d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:31:12 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit b921b50a084f206c4bea4fcc0168156aedc57f18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:15:25 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 986aa2e373f5029b7abcdfb2c70913c7e38fa705
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:13:52 2008 +0000
| 
|     remove obsolete comments
| 
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/r/distribution.R
|  
* commit 3800fe3ea54e6c4a18e2e7d142f865e78ebfdba9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 15 15:05:23 2008 +0000
| 
|     Document everything in features/ and clustering/, fixes for regression/kernel.
|     
|     To be really useful we still need documentation for everything in
|     
|     • classifier/*
|     • distances/*
|     • distributions/*
|     
|     and of course we need some first steps tutorial for the modular interfaces.
| 
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/distributions/Distribution.h
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/Features.h
| M	src/features/IntFeatures.h
| M	src/features/Labels.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/ShortRealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit a98798e8c4c47b2ef386dd4bae6f6b96ed8507f1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 15 08:09:44 2008 +0000
| 
|     minor correction
| 
| M	src/kernel/GaussianShiftKernel.h
|  
* commit 04787ac4c1a52cdac08a3a5fccc3d901ffa04f79
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Aug 15 08:04:57 2008 +0000
| 
|     added some documentation of the GaussianShift kernel
| 
| M	src/kernel/GaussianShiftKernel.h
|  
* commit df07de8e47143b6d25f5226053b735c789277e78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 14 21:16:21 2008 +0000
| 
|     document kernels
| 
| M	src/NEWS
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/GaussianShortRealKernel.h
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/OligoKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.h
|  
* commit 0f83670eb1796c6050c56dd4366be451caae98e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 16:22:27 2008 +0000
| 
|     kill remaining randomness, testsuite runs through now for octave/python/python-modular
| 
| M	src/kernel/CustomKernel.cpp
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_16_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_0001_1en05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_0001_1en05_Linear_30_15_16.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
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| A	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| M	testsuite/generator/kernel.py
|  
* commit de0ec9480af9ef62b2b3b372b6c80545229b6fe7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 16:18:48 2008 +0000
| 
|     default PYTHON to python
| 
| M	testsuite/python/test_all.sh
|  
* commit af72ca7ed8022c750a38cf7e0ddfa455f6cd9e64
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 15:51:47 2008 +0000
| 
|     regenerate test data
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| D	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
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| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| D	testsuite/data/classifier/LDA_1_01.m
| D	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| D	testsuite/data/classifier/LibLinear_30_16_00001_True.m
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| D	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| D	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
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| D	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
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| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| D	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| D	testsuite/data/classifier/Perceptron_1_01_1000.m
| D	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
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| D	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| D	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| D	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/MinkowskiMetric_13.m
| D	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| D	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| D	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| D	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| D	testsuite/data/kernel/AUC_15_Gaussian_10.m
| D	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Custom_7.m
| D	testsuite/data/kernel/Diag_230.m
| D	testsuite/data/kernel/Distance_CanberraMetric_17.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/GaussianShift_1_2_13.m
| D	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernel/LinearString_60_DNA.m
| D	testsuite/data/kernel/LinearWord_fnord.m
| D	testsuite/data/kernel/Linear_10.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_False_3_False.m
| D	testsuite/data/kernel/Poly_False_3_True.m
| D	testsuite/data/kernel/Poly_True_3_False.m
| D	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| D	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_13_10_11.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| D	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| D	testsuite/data/preproc/NormOne_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| D	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| D	testsuite/data/preproc/SortWord_LinearWord.m
| D	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| D	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| D	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
| M	testsuite/generator/classifier.py
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/python-modular/clustering.py
| M	testsuite/python/clustering.py
|  
* commit 2e017dfef0f993be135f7b284286e06a19c779ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 13 15:06:01 2008 +0000
| 
|     explicitly call init_random for distributions/clustering in generator, also limit accuracy for histogram as only 7 ascii digits are written out
| 
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit efebea77601df95ef9096ebdeb4b846a737d9f34
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Aug 13 00:07:11 2008 +0000
| 
|     testsuite:
|     - SparseLinear classifiers and kernels with sparse features should work now in
|       static octave/matlab. Some classifiers, possibly need an adjustment in the
|       allowed accuracy to succeed, though.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit 758192baf6c4703c7516ccc39fd56dd105e9c120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 23:32:21 2008 +0000
| 
|     interface:
|     - Fixed issue because SVM parameter C was not passed on from guilib to
|       classifier in static interface.
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 3b09f7ced6518d31efb643d037ab1fd36ee8259a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 22:15:10 2008 +0000
| 
|     testsuite:
|     - Fixed issue with CustomKernel in octave modular.
| 
| M	testsuite/octave-modular/kernel.m
|  
* commit e23cccd176cd669dc5a52da0ac80927e45f1382f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 20:37:38 2008 +0000
| 
|     testsuite:
|     - Modified constant random handling in various places.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
| M	testsuite/octave-modular/clustering.m
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
| M	testsuite/r/clustering.R
| M	testsuite/r/test_one.R
|  
* commit 07086000d27059af331516e73ba315c0cb492120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 20:36:11 2008 +0000
| 
|     testsuite:
|     - Bugfix in shogun's random handling requires new data files.
| 
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_0017_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_023_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/GPBTSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1en05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1en05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVMOneClass_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/MPDSVM_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_0017_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_023_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_15_15_1.m
| M	testsuite/data/classifier/SVMLight_001_1en05_Linear_30_15_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| M	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_0017_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_023_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLight_15_001_1en05_Gaussian_30_1.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| M	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric_fnord.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric_fnord.m
| M	testsuite/data/distance/EuclidianDistance_fnord.m
| M	testsuite/data/distance/GeodesicMetric_fnord.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric_fnord.m
| M	testsuite/data/distance/ManhattanMetric_fnord.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| M	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 20144de22768b6664e97a8c6b4d43368901bb2f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 19:15:17 2008 +0000
| 
|     testsuite:
|     - In octave-modular, forgot to rename a global variable at some stage which
|       made DistanceKernel crash.
| 
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit e0e5df8a0061625129a7c7ca74748c45cb6b8504
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 19:12:00 2008 +0000
| 
|     testsuite:
|     - CustomKernel doesn't crash anymore in octave-modular, but testing still
|       isn't working properly.
| 
| M	testsuite/octave-modular/kernel.m
|  
* commit 55cb38f626effe09a5e24e3ef41261e74eb9f1ce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Aug 12 18:45:35 2008 +0000
| 
|     testsuite:
|     - Enabled linear classifiers with sparse features for static interfaces
|       octave/matlab, alas something doesn't compute well.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit d266884012338d805789abaa4717e399d63796f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 12 14:53:11 2008 +0000
| 
|     fix a long standing bug in seeding the random number generator. now seeding is reliable, however all scripts relying on init_random will have to be adjusted
| 
| M	src/clustering/KMeans.cpp
| M	src/interface/SGInterface.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit de694f3ea9b15e5c8eb03dc7d6061f510d678c27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 12 09:35:36 2008 +0000
| 
|     trap distance == NULL
| 
| M	src/kernel/DistanceKernel.cpp
|  
* commit 536508394e63b32212739fb3f20c60d7f5af49aa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Aug 11 18:51:15 2008 +0000
| 
|     - Updated news.
| 
| M	src/NEWS
|  
* commit 1c2d4b6e5df9daecc1cfe1524949d6d667fac45f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Aug 11 18:47:17 2008 +0000
| 
|     weird crashes in modular octave:
|     - Does not seem to concern Soeren, but shogun crashes often when working with
|       classifiers in octave modular. a rearranging of the shogun modules loaded on
|       startup, like alphabetical sorting, seems to remedy this.
| 
| M	src/Makefile
|  
* commit 9ab2c20ee9fd4b40584ca352158783e76e12e8c6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 10 17:50:01 2008 +0000
| 
|     testsuite:
|     - Added code random seeding for clustering in R static, which does not seem to
|       do much, though.
| 
| M	testsuite/r/clustering.R
|  
* commit a63fa493911f8f56196777630ae4d1ab71f2d2cf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 10 17:34:03 2008 +0000
| 
|     testsuite:
|     - Oops, forgot a checkin for R static.
| 
| A	testsuite/r/classifier.R
| M	testsuite/r/kernel.R
| M	testsuite/r/regression.R
| A	testsuite/r/util/fix_classifier_name_inconsistency.R
| M	testsuite/r/util/set_features.R
|  
* commit 8d6d1cf24fe8c0509f7e1a78c5bb2ea3566e19af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 10 08:51:49 2008 +0000
| 
|     add make tests for matlab (works now for all except randomized algos :)
| 
| M	src/Makefile
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_one.sh
|  
* commit efdc49de5abd5a8568b045d085e79cdd50abb01b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Aug 9 17:02:33 2008 +0000
| 
|     fix one liner normalization const function - however this still is not the right way to do it
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 90cf054171402b3dfee04a3194ed4cbf0209257e
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Wed Aug 6 09:58:57 2008 +0000
| 
|     Added method to explicitly set the normalization.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit df12a5f1fea0b1ff8719e89773acf79da9cb52f1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:58:01 2008 +0000
| 
|     testsuite:
|     - Fixed erroneous regression_* in classifier for octave static.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit 8d14a78c959c3a0cf50b873f4c6b7ae53f0f9e59
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:30:31 2008 +0000
| 
|     testsuite:
|     - Added testing for clustering in R static. KMeans seems to calculate
|       different results, though.
| 
| A	testsuite/r/clustering.R
| M	testsuite/r/kernel.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/fix_clustering_name_inconsistency.R
|  
* commit afc6969d3a70db37e88e03a3438bf24ec93fdd0c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Aug 3 19:09:08 2008 +0000
| 
|     testsuite:
|     - Added testing for distance in R static.
| 
| A	testsuite/r/distance.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/set_distance.R
|  
* commit 52f6d8e82235f81f6fe5cad49b525084607a9631
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 21:26:39 2008 +0000
| 
|     testsuite:
|     - Added testing for distribution in R static.
| 
| A	testsuite/r/distribution.R
| M	testsuite/r/util/check_accuracy.R
|  
* commit 480db8d9f4cb02b1ad80e4c02d18528c74b1ac56
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 21:06:33 2008 +0000
| 
|     testsuite:
|     - Added testing for regression in R static.
|     - Some cosmetic modifications for kernel and preproc in R static.
| 
| M	testsuite/r/kernel.R
| M	testsuite/r/preproc.R
| A	testsuite/r/regression.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/fix_regression_name_inconsistency.R
|  
* commit 35131de4c799a84c94b96e507d1d45b631cbf5cc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 20:08:47 2008 +0000
| 
|     testsuite:
|     - Added testing for preproc in r static.
| 
| A	testsuite/r/preproc.R
| A	testsuite/r/util/fix_preproc_name_inconsistency.R
|  
* commit 83ac8f7d4fd402fec823ae9d4601dcad702b1143
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 02:35:34 2008 +0000
| 
|     testsuite:
|     - Testing for kernels in R static is now functional.
| 
| M	testsuite/r/kernel.R
| M	testsuite/r/test_all.sh
| M	testsuite/r/test_one.R
| M	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/convert_features_and_add_preproc.R
| A	testsuite/r/util/fix_distance_name_inconsistency.R
| A	testsuite/r/util/fix_kernel_name_inconsistency.R
| A	testsuite/r/util/fix_normalization_inconsistency.R
| M	testsuite/r/util/read_mfile.R
| M	testsuite/r/util/set_features.R
| M	testsuite/r/util/set_kernel.R
| A	testsuite/r/util/tobool.R
|  
* commit c9353f71bbaba6beba86b7fa48b7656d70a94cbc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Aug 2 02:34:34 2008 +0000
| 
|     testsuite:
|     - An integer was erroneously specified as a string in subkernel-related data
|       files.
| 
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/generator/kernel.py
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 3776da8d428487a5553104baf84ea4a2fed3c9f8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Aug 1 01:49:06 2008 +0000
| 
|     testsuite:
|     - Attempt at getting test for GaussianKernel working, but there seems
|       something broken when trying to use shogun in R.
| 
| A	testsuite/r/kernel.R
| D	testsuite/r/read_mfile.R
| D	testsuite/r/run.sh
| D	testsuite/r/test_R.R
| M	testsuite/r/test_all.sh
| D	testsuite/r/test_kernels.R
| A	testsuite/r/test_one.R
| A	testsuite/r/util/check_accuracy.R
| A	testsuite/r/util/read_mfile.R
| A	testsuite/r/util/set_features.R
| A	testsuite/r/util/set_kernel.R
|  
* commit 237f5ceb612f5a5d677a1c7588c8ba037ebb3961
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 31 21:01:33 2008 +0000
| 
|     testsuite:
|     - Replaced erroneous gamma_ through gamma in code related to Sigmoid kernel.
|     - Forgot to remove/add LinearWord data file with new filename.
| 
| D	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/LinearWord_fnord.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/generator/config.py
| M	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 2357cc7df26f8f7549797cd9445af8e3d9a54e08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 18:07:26 2008 +0000
| 
|     kernel:
|     - Little documentation fix in constructor.
| 
| M	src/kernel/SalzbergWordKernel.h
|  
* commit 25898d56c712a6b8af0f0f902e8604d28f3e9ca4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:32:37 2008 +0000
| 
|     testsuite:
|     - Forgot some line continuations in previous check-in.
| 
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 8941c3bae0e1062a1b4a8df9200700e191e2c104
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:31:13 2008 +0000
| 
|     testsuite:
|     - Made testing for octave modular (hopefully) compatible to matlab, in case
|       there will be a modular interface for matlab in the future.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/tobool.m
|  
* commit da79e24f3b5dbadd804db8c821e95d658b23210e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 30 00:07:44 2008 +0000
| 
|     testsuite:
|     - Made testing for static octave interface compatible with matlab.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/test_all.sh
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| M	testsuite/matlab_and_octave/util/set_kernel.m
| M	testsuite/matlab_and_octave/util/tobool.m
|  
* commit 1b85eebd7d3c896d5fadc2ae6d096bf24dd5004b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 20:52:11 2008 +0000
| 
|     testsuite:
|     - Incorporated goodies from octave modular into octave static.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| D	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
| D	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
| D	testsuite/matlab_and_octave/util/check_accuracy_hierarchical.m
| D	testsuite/matlab_and_octave/util/check_accuracy_kmeans.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| D	testsuite/matlab_and_octave/util/set_and_train_distance.m
| D	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| A	testsuite/matlab_and_octave/util/set_distance.m
| M	testsuite/matlab_and_octave/util/set_features.m
| A	testsuite/matlab_and_octave/util/set_kernel.m
|  
* commit c4b9a26ded24a828ce489d9d82db2827388dbb05
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 20:01:56 2008 +0000
| 
|     testsuite:
|     - Some issues in octave modular are not related to namespace, so the module
|       testers' names have been reverted to be in line with the other interfaces.
| 
| A	testsuite/octave-modular/classifier.m
| A	testsuite/octave-modular/clustering.m
| A	testsuite/octave-modular/distance.m
| A	testsuite/octave-modular/distribution.m
| A	testsuite/octave-modular/kernel.m
| A	testsuite/octave-modular/preproc.m
| A	testsuite/octave-modular/regression.m
| D	testsuite/octave-modular/test_classifier.m
| D	testsuite/octave-modular/test_clustering.m
| D	testsuite/octave-modular/test_distance.m
| D	testsuite/octave-modular/test_distribution.m
| D	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_one.sh
| D	testsuite/octave-modular/test_preproc.m
| D	testsuite/octave-modular/test_regression.m
|  
* commit aed8cc112e300849b500baa8131b828ac1c9584c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 29 19:44:31 2008 +0000
| 
|     testsuite:
|     - Various cleanups for octave modular, like exception handling for
|       SV{M,R}Light, namespace (non-)issues and others.
| 
| M	testsuite/octave-modular/test_classifier.m
| M	testsuite/octave-modular/test_clustering.m
| M	testsuite/octave-modular/test_distance.m
| M	testsuite/octave-modular/test_distribution.m
| M	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_preproc.m
| M	testsuite/octave-modular/test_regression.m
| M	testsuite/octave-modular/util/check_accuracy.m
| D	testsuite/octave-modular/util/check_accuracy_classifier.m
| D	testsuite/octave-modular/util/check_accuracy_distribution.m
| D	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| D	testsuite/octave-modular/util/check_accuracy_kmeans.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit a59b1d2e2595c3500c7b1eaf6576ae880d62cd93
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 20:47:32 2008 +0000
| 
|     examples:
|     - Enabled LinearByteKernel for octave modular.
|     - Fixed a slightly wrong instantiation of AUCKernel.
| 
| M	examples/octave-modular/all_kernels.m
|  
* commit 949e0d586f2d7b928ab8c642c7c122be273a8997
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 20:46:26 2008 +0000
| 
|     testsuite:
|     - Implemented tests for kernels in octave modular.
| 
| M	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pie.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit d3c04f7432b213bdb487a3f6f6c7de9b320789a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 25 17:30:29 2008 +0000
| 
|     testsuite:
|     - Implemented testsuite for classifiers in octave modular.
| 
| M	testsuite/octave-modular/test_classifier.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_features.m
|  
* commit 0a6fac13e1184cf71e67ccd8f9543d64d957e8b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 24 15:54:47 2008 +0000
| 
|     add example that shows loading/saving
| 
| A	examples/cmdline/libsvm.sg
|  
* commit fab70bb78f9745bc71bc926da2e047bf8ed8d946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 24 13:47:58 2008 +0000
| 
|     fix documentation string and LDA / lapack compile error
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 83cace1c0fa78003ad882cf1983e4c64552a4c17
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 24 01:24:13 2008 +0000
| 
|     testsuite:
|     - Some renaming due to forementioned issue.
|     - Testing for clustering, distribution and distance works now.
| 
| D	testsuite/octave-modular/classifier.m
| D	testsuite/octave-modular/clustering.m
| D	testsuite/octave-modular/distance.m
| D	testsuite/octave-modular/distribution.m
| D	testsuite/octave-modular/kernel.m
| D	testsuite/octave-modular/preproc.m
| D	testsuite/octave-modular/regression.m
| A	testsuite/octave-modular/test_classifier.m
| A	testsuite/octave-modular/test_clustering.m
| A	testsuite/octave-modular/test_distance.m
| A	testsuite/octave-modular/test_distribution.m
| A	testsuite/octave-modular/test_kernel.m
| M	testsuite/octave-modular/test_one.sh
| A	testsuite/octave-modular/test_preproc.m
| A	testsuite/octave-modular/test_regression.m
| M	testsuite/octave-modular/util/check_accuracy_distribution.m
| M	testsuite/octave-modular/util/globals.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
|  
* commit 9e117730d6172efcb2753e8b5b77dee37929b22e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 24 01:23:09 2008 +0000
| 
|     testsuite:
|     - Namespace clashes in octave modular made it necessary to change filenames
|       that equal an octave (more specifically shogun) class name.
| 
| D	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraMetric_fnord.m
| D	testsuite/data/distance/ChebyshewMetric.m
| A	testsuite/data/distance/ChebyshewMetric_fnord.m
| D	testsuite/data/distance/EuclidianDistance.m
| A	testsuite/data/distance/EuclidianDistance_fnord.m
| D	testsuite/data/distance/GeodesicMetric.m
| A	testsuite/data/distance/GeodesicMetric_fnord.m
| D	testsuite/data/distance/JensenMetric.m
| A	testsuite/data/distance/JensenMetric_fnord.m
| D	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanMetric_fnord.m
| D	testsuite/data/distance/SparseEuclidianDistance.m
| A	testsuite/data/distance/SparseEuclidianDistance_fnord.m
| M	testsuite/generator/fileop.py
|  
* commit 3ff9fe903a9239da3e7df9b1574f40d672f6c218
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 19:51:18 2008 +0000
| 
|     testsuite:
|     - Implemented regression for octave modular.
|     - Various clean-ups in octave modular.
| 
| M	testsuite/octave-modular/classifier.m
| M	testsuite/octave-modular/clustering.m
| M	testsuite/octave-modular/distance.m
| M	testsuite/octave-modular/distribution.m
| M	testsuite/octave-modular/kernel.m
| M	testsuite/octave-modular/preproc.m
| M	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| M	testsuite/octave-modular/util/check_accuracy.m
| M	testsuite/octave-modular/util/check_accuracy_classifier.m
| M	testsuite/octave-modular/util/check_accuracy_distribution.m
| M	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| M	testsuite/octave-modular/util/check_accuracy_kmeans.m
| M	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| M	testsuite/octave-modular/util/set_distance.m
| M	testsuite/octave-modular/util/set_features.m
| M	testsuite/octave-modular/util/set_kernel.m
| M	testsuite/octave-modular/util/set_pie.m
| M	testsuite/octave-modular/util/set_pos_and_neg.m
|  
* commit 3ac138a02669152671c35c0351c3951ef398b05a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 18:39:50 2008 +0000
| 
|     testsuite:
|     - Previous change required a new build of data files with WordFeatures.
| 
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
|  
* commit 76735c02f40de3422bb1b13d31649a4d0f35efbc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 18:38:12 2008 +0000
| 
|     testsuite:
|     - Due to a misunderstanding, WordFeatures were put into cell arrays as strings
|       which is now fixed.
| 
| M	testsuite/generator/fileop.py
|  
* commit 661dce14fc5995b8a76a237a1b503469540da581
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 23 12:15:54 2008 +0000
| 
|     add save_classifier command (which will currently only work for SVMs)
| 
| M	src/NEWS
| M	src/classifier/svm/SVM.cpp
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 352c73dad19cb9f38039d380f186f94b6b300050
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 23 01:32:49 2008 +0000
| 
|     testsuite:
|     - Added code for octave modular, preproc is almost working.
| 
| A	testsuite/octave-modular/classifier.m
| A	testsuite/octave-modular/clustering.m
| A	testsuite/octave-modular/distance.m
| A	testsuite/octave-modular/distribution.m
| A	testsuite/octave-modular/kernel.m
| A	testsuite/octave-modular/preproc.m
| A	testsuite/octave-modular/regression.m
| M	testsuite/octave-modular/test_all.sh
| A	testsuite/octave-modular/test_one.sh
| A	testsuite/octave-modular/util/check_accuracy.m
| A	testsuite/octave-modular/util/check_accuracy_classifier.m
| A	testsuite/octave-modular/util/check_accuracy_distribution.m
| A	testsuite/octave-modular/util/check_accuracy_hierarchical.m
| A	testsuite/octave-modular/util/check_accuracy_kmeans.m
| A	testsuite/octave-modular/util/convert_features_and_add_preproc.m
| A	testsuite/octave-modular/util/globals.m
| A	testsuite/octave-modular/util/set_distance.m
| A	testsuite/octave-modular/util/set_features.m
| A	testsuite/octave-modular/util/set_kernel.m
| A	testsuite/octave-modular/util/set_pie.m
| A	testsuite/octave-modular/util/set_pos_and_neg.m
| A	testsuite/octave-modular/util/tobool.m
|  
* commit d89e5fc2dac13815513e7049ac3ab3c12f8ba9bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 22 20:09:22 2008 +0000
| 
|     testsuite:
|     - Minor improvements for octave static.
| 
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
|  
* commit 15351ae434ce2693301b874c95babdeab195ebd5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 23:10:58 2008 +0000
| 
|     testsuite:
|     - Testing for classifiers is now working in static octave.
|     - Slightly improved error handling, making runs of test_all.sh smoother in
|       static octave.
| 
| M	testsuite/matlab_and_octave/classifier.m
| M	testsuite/matlab_and_octave/clustering.m
| M	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit c99d146ec6863fa3a1d80b7b092d5a20c62c92b1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:35:31 2008 +0000
| 
|     testsuite:
|     - Testing for distributions now works in static octave.
| 
| M	testsuite/matlab_and_octave/distribution.m
| M	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
|  
* commit 3e2f7e8eae894e374a15a6b641fc77bb16c88ef1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:21:15 2008 +0000
| 
|     testsuite:
|     - Tests for regression now work in octave static.
| 
| M	testsuite/matlab_and_octave/regression.m
| M	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
|  
* commit 58942f8c33db6cb22784fa7f6f365af0af6fba70
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 22:09:25 2008 +0000
| 
|     testsuite:
|     - test_all now correctly identifies failing tests in octave static.
| 
| M	testsuite/matlab_and_octave/test_all.sh
|  
* commit 98579bbae405ae2f317a42fd7206e65370dc8c15
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:56:19 2008 +0000
| 
|     testsuite:
|     - All data files have been changed due to changes previous 2 commits.
| 
| D	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1en05_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| D	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1en05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
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| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_023_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_15_1_3_DNA_True_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True.m
| A	testsuite/data/classifier/SVMLight_60_001_1en05_WeightedDegreeString_30_1_3_DNA_True_True.m
| D	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMLin_30_1_1en05_True.m
| D	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_0017_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_023_1_1en05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_15_1_1en05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| D	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_1en05_False.m
| D	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_0017_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1_1en05_True.m
| D	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1_1en05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| D	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_1en05_True.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1en05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1en05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1en05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| D	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| A	testsuite/data/distribution/HMM_4_60_6_3_0_1en10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| D	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_16_1en05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| D	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1en06_15.m
| D	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_023_1_15_1en05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_15_1_15_1en05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1en05_Gaussian_001.m
|  
* commit 496662e97f753fa13afb34185a72a748a7d24801
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:49:25 2008 +0000
| 
|     testsuite:
|     - Generator now replaces '+' by 'p' and '-' by 'n' in data filenames, as
|       octave (and presumably matlab) don't like these in filenames
| 
| M	testsuite/generator/fileop.py
|  
* commit 97db368b95df6479eb81da90fdef2a08a8652f2b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 21 21:25:22 2008 +0000
| 
|     testsuite:
|     - Attach a semi-colon to the end of lines of data files which bodes well
|       with octave and matlab.
| 
| M	testsuite/generator/fileop.py
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
|  
* commit a80c9c708209152f93ad7e76232bcfb9fbc34de1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 18 19:50:23 2008 +0000
| 
|     testsuite:
|     - Added convenience function to convert to booleans for octave static.
| 
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| A	testsuite/matlab_and_octave/util/tobool.m
|  
* commit 653ce2fdabc9052b68d0f421febb21291ad7ec76
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 18 19:28:31 2008 +0000
| 
|     testsuite:
|     - Added classifier/distribution/regression to octave static, but none of these
|       actually work due to unresolved filename/evaluation (e.g. 1e-05) issues.
| 
| A	testsuite/matlab_and_octave/classifier.m
| A	testsuite/matlab_and_octave/distribution.m
| A	testsuite/matlab_and_octave/regression.m
| A	testsuite/matlab_and_octave/util/check_accuracy_classifier.m
| A	testsuite/matlab_and_octave/util/check_accuracy_distribution.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit 29b23fefac064ed78e4fbd20c7d30fa01fb1264e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 17 22:10:35 2008 +0000
| 
|     testsuite:
|     - Added testing of clustering to octave static interface.
| 
| A	testsuite/matlab_and_octave/clustering.m
| A	testsuite/matlab_and_octave/util/check_accuracy_hierarchical.m
| A	testsuite/matlab_and_octave/util/check_accuracy_kmeans.m
| M	testsuite/matlab_and_octave/util/globals.m
|  
* commit aca3305a7ea45d01bcc677e083883c43ac1da5ee
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 17 21:29:47 2008 +0000
| 
|     testsuite:
|     - Added support for distances for octave static.
|     - Added a semicolon to one line's end in kernel tester to suppress unnecessary
|       output.
|     - Added global variables for regression testing.
| 
| A	testsuite/matlab_and_octave/distance.m
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
|  
* commit b9af70a8618409e5cef8096b83695532a73b60dc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 22:08:41 2008 +0000
| 
|     testsuite:
|     - Modified functions to return boolean values instead of 0/1.
| 
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/check_accuracy.m
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/set_and_train_distance.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 50704b1ce8e88ded200d0c1c8c84b9e395bd55c6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 21:16:46 2008 +0000
| 
|     interface:
|     - Fixed segfault issue when attaching preprocs.
| 
| M	src/guilib/GUIPreProc.cpp
|  
* commit 3672231e72ff88f1845892ac700106179474425b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 16 21:10:07 2008 +0000
| 
|     testsuite:
|     - Added support fore preprocs in octave static.
| 
| A	testsuite/matlab_and_octave/preproc.m
| M	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
|  
* commit 4f2096f342a773e72a89b05c350f173334a29057
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 22:27:00 2008 +0000
| 
|     testsuite:
|     - Implemented non-handling of FK/TOP features in static octave interface.
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit ba7ca3a9241f2c92234eccb97a800bd95bc2851a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 22:26:15 2008 +0000
| 
|     testsuite:
|     - Tuned data file generation to exclude a superflous array which makes octave
|       choke on parsing the file. Only happened to exist for FK/TOP features.
| 
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit f2821599944417af578f2ce8bf8816c935dc85e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 21:17:02 2008 +0000
| 
|     testsuite:
|     - Implemented testing for Combined kernel in octave static.
| 
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 6bd26f64a102ac860c230ef71e0848594d22debe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 02:18:39 2008 +0000
| 
|     testsuite:
|     - Tests for kernels for octave static now working, except for Combined and
|       FK/TOP (and the ones not supported by static interface).
| 
| M	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_all.sh
| M	testsuite/matlab_and_octave/test_one.sh
| M	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| M	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit c58b5fee45e4bd400d61b21f41ecd60ca5383804
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 00:58:35 2008 +0000
| 
|     testsuite:
|     - Adjusted testers for python static and modular to previous changes.
| 
| M	testsuite/python-modular/test_one.py
| M	testsuite/python/test_one.py
|  
* commit 336ba0e4149642506b2093ea423ada24550051d9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 15 00:56:24 2008 +0000
| 
|     testsuite:
|     - Data types which are not int, long, float or complex are now put into cell
|       arrays. Hence requiring a change of a bunch of data files.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| M	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/fileop.py
|  
* commit a516e49314673db57f189eb87cd1a8577d14031e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 10 22:36:06 2008 +0000
| 
|     interface/examples/testsuite:
|     - Fixed missing ! bug in octave interface for reading boolean values, changed
|       examples/testsuite accordingly.
| 
| M	examples/matlab_and_octave/all_classifier.m
| M	examples/matlab_and_octave/all_kernels.m
| M	examples/matlab_and_octave/all_preproc.m
| M	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| M	examples/matlab_and_octave/graphical/spec_interp.m
| M	examples/matlab_and_octave/graphical/test_poim_wds.m
| M	examples/matlab_and_octave/graphical/test_regression_mkl.m
| M	examples/matlab_and_octave/graphical/test_spec_interp.m
| M	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| M	examples/matlab_and_octave/graphical/wds_consensus.m
| M	examples/matlab_and_octave/graphical/wds_shift_interp.m
| M	examples/matlab_and_octave/liblinear.m
| M	examples/matlab_and_octave/lpboost.m
| M	examples/matlab_and_octave/lpm.m
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| M	examples/matlab_and_octave/mkl_regression_sine.m
| M	examples/matlab_and_octave/spec_kernel.m
| M	examples/matlab_and_octave/string_features.m
| M	examples/matlab_and_octave/svmocas.m
| M	examples/matlab_and_octave/svmsgd.m
| M	examples/matlab_and_octave/wd_kernel.m
| M	examples/matlab_and_octave/wds_kernel.m
| M	examples/matlab_and_octave/weighted_spec.m
| M	src/interface/OctaveInterface.cpp
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
|  
* commit dd249144f3a3953d623403c525aed6f3834c4110
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 10 21:43:56 2008 +0000
| 
|     structure:
|     - Compile fix: commented non-existing call to print method.
| 
| M	src/structure/DynProg.cpp
|  
* commit c4ec278fa5c5bb57f0085cbc7ca219d41889999d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 8 23:10:13 2008 +0000
| 
|     testsuite:
|     - Added support for kernels using REAL features.
| 
| M	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 32df2568c1aa2150bfbb85624c6338c4781a0d8d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 8 18:12:41 2008 +0000
| 
|     testsuite:
|     - Got rid of erroneous name_kernel (should have been kernel_name) in data
|       files and hence in interface-specific testsuites.
| 
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_False_Gaussian_12.m
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| A	testsuite/data/preproc/PruneVarSubMean_True_Gaussian_12.m
| A	testsuite/data/preproc/SortUlongString_2_60_0_False_DNA_CommUlongString_3_False.m
| D	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWordString_2_60_0_False_DNA_CommWordString_3_False.m
| D	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/preproc.py
| M	testsuite/matlab_and_octave/util/globals.m
| M	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/python-modular/preproc.py
| M	testsuite/python/util.py
|  
* commit 3a676ba4694c3801320546ef4802cdd19f89a18d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jul 7 23:25:38 2008 +0000
| 
|     testsuite:
|     - Seemingly one test for Sigmoid kernel now working.
| 
| M	testsuite/matlab_and_octave/kernel.m
| D	testsuite/matlab_and_octave/run_matlab.sh
| D	testsuite/matlab_and_octave/run_octave.sh
| M	testsuite/matlab_and_octave/test_all.sh
| D	testsuite/matlab_and_octave/test_matlab.m
| D	testsuite/matlab_and_octave/test_octave.m
| A	testsuite/matlab_and_octave/test_one.sh
| A	testsuite/matlab_and_octave/util/check_accuracy.m
| A	testsuite/matlab_and_octave/util/globals.m
| A	testsuite/matlab_and_octave/util/set_and_train_distance.m
| A	testsuite/matlab_and_octave/util/set_and_train_kernel.m
| M	testsuite/matlab_and_octave/util/set_features.m
|  
* commit b3d431ab68df50c437946d3a21c44ff643967176
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Jul 5 19:15:08 2008 +0000
| 
|     in semi-markov dynamic programming code:
|     * changed max_look_back default length
|     * new version of code only looks at transitions that are actually allowed
|     * some more outputs about max_look_back
| 
| M	src/structure/DynProg.cpp
|  
* commit 069ec3cb2c30561e5a78c7c40e83cc88051e391d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jul 5 00:01:27 2008 +0000
| 
|     testsuite:
|     - Creeping towards testsuite for octave static.
| 
| A	testsuite/matlab_and_octave/kernel.m
| M	testsuite/matlab_and_octave/test_all.sh
| D	testsuite/matlab_and_octave/test_kernels.m
| M	testsuite/matlab_and_octave/test_octave.m
| A	testsuite/matlab_and_octave/util/convert_features_and_add_preproc.m
| A	testsuite/matlab_and_octave/util/fix_classifier_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_clustering_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_distance_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_kernel_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_normalization_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_preproc_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/fix_regression_name_inconsistency.m
| A	testsuite/matlab_and_octave/util/set_features.m
|  
* commit 8d74302d05a7f76e2009cdb60cd881f74a210d5d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jul 4 00:36:52 2008 +0000
| 
|     testsuite:
|     - Cosmetic cleanup in testsuite for python static.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/preproc.py
| M	testsuite/python/regression.py
|  
* commit d3256f648352283c05a04755cc524ac597178a83
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:43:18 2008 +0000
| 
|     interface:
|     - Very similar fix to previous KRR, but tube_epsilon wasn't actually set in
|       classifier for LibSVR/SVR_Light.
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit b66d44163c37ae30fbaa2937f9cb5f6676667af8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:28:44 2008 +0000
| 
|     interface:
|     - Fixed bug in KRR regression which did not set tau properly within the
|       initialised 'classifier'.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 98d8962dafc54b6ee923ab19fa6cfff6732bd29f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 19:02:22 2008 +0000
| 
|     interface/testsuite:
|     - Changed default value for scale parameter of Linear kernels in static
|       interface, so that testsuite for python static now succeeds.
| 
| M	src/interface/SGInterface.cpp
| M	testsuite/python/util.py
|  
* commit d899271ad43073cafee33edaa6d25189254cee8a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jul 3 01:14:10 2008 +0000
| 
|     testsuite/interface:
|     - static and modular interfaces now do the same in Hierarchical clustering,
|       not sure if it is the correct sameness, though.
| 
| M	src/clustering/Hierarchical.h
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/python/clustering.py
|  
* commit 83c4c6bba6ef9a57587be9adf70fc4695252d9ab
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jul 2 23:03:46 2008 +0000
| 
|     testsuite/interface:
|     - Changed default for nu in static interfaces to the same value as in the
|       SVM class. classifier testsuite for python static should now run through.
| 
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/python/classifier.py
|  
* commit 870c56f08c47ce30bab8bb7367c63a3301fce4d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jul 2 12:52:19 2008 +0000
| 
|     fix spelling
| 
| M	doc/pages/Methods.mainpage
|  
* commit 1a489e7a0dd389d1b96b4446bc2684b680146c2c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 1 19:41:43 2008 +0000
| 
|     interface:
|     - Added parameter gamma to training of classifier LDA which makes testsuite
|       for python static succeed on it.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
|  
* commit 3b59c1c207b108eeb2880527e2c94b1aae7563a2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jul 1 19:14:05 2008 +0000
| 
|     testsuite:
|     - python static now handles alpha/bias situation gracefully.
| 
| M	testsuite/python/classifier.py
|  
* commit 8a7597d41171f310aaeaa430ecfac6256c2be17d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jun 30 20:41:12 2008 +0000
| 
|     kernel:
|     - Fixed compile warnings in OligoKernel.
| 
| M	src/kernel/OligoKernel.cpp
|  
* commit 6fcb15516f3ca9cb6e052e169b09cd1ff1ce994a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jun 28 23:10:48 2008 +0000
| 
|     kernel/interface/testsuite/examples:
|     - SalzbergWordKernel: made set_prior_probs available to static interfaces,
|       added set_prior_probs_from_labels to the kernel, adjusted testgenerator
|       and python static/modular examples and testsuite.
| 
| M	examples/python-modular/all_kernels.py
| M	examples/python/all_kernels.py
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	testsuite/python/util.py
|  
* commit a5d3b6475725334fa80fde7177a3ca5a3a1cc1ff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 20:19:01 2008 +0000
| 
|     testsuite:
|     - Improved error/not implemented handling for features in python static.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
|  
* commit bdf4265d1c526a8fe31e49355948bf5ddcd0b3e4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 01:14:24 2008 +0000
| 
|     testsuite:
|     - Implemented tests for regression in python static. Many tests fail, though.
| 
| M	testsuite/python/regression.py
| M	testsuite/python/util.py
|  
* commit d98d8735ecb7738254c185b2a04d55ea828eb72b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 00:36:05 2008 +0000
| 
|     testsuite:
|     - Added preproc handling to testsuite for python static.
| 
| M	testsuite/python/preproc.py
| M	testsuite/python/util.py
|  
* commit fdad2e5b841f6d130fd09958c5293f7a9597a457
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 27 00:24:33 2008 +0000
| 
|     testsuite:
|     - Implemented testsuite for kernels in python static - a few compute quite
|       different results than python modular, though.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/kernel.py
| M	testsuite/python/util.py
|  
* commit 9e207aee3e7364c084a0d7367dd2133096975c19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 25 03:05:38 2008 +0000
| 
|     fix libsm script (init_shogun missing)
| 
| M	examples/octave-modular/libsvm.m
|  
* commit 151ca04e40c5252d89ea0201fe27935a2fb10d8d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 23:45:14 2008 +0000
| 
|     testsuite:
|     - Somewhat implemented testing for static python distance and distribution,
|       the latter one lacking of a complete interface implementation to make it
|       useful.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/distance.py
| M	testsuite/python/distribution.py
| M	testsuite/python/util.py
|  
* commit d79c8d83836036f60b5a2280fdba2cb49ee3be50
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 23:01:37 2008 +0000
| 
|     interface:
|     - Fixed a bug when counting arguments for HammingWordDistance.
| 
| M	src/interface/SGInterface.cpp
|  
* commit c27e442116d61804551e46f3e47ecbeccd76ec6c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 22:30:04 2008 +0000
| 
|     testsuite:
|     - static python now exits with success when Perceptron does not converge on
|       train.
| 
| M	testsuite/python/classifier.py
|  
* commit 9724667353a0636a20c9d4c1617eaed87d947378
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 16:52:13 2008 +0000
| 
|     testsuite:
|     - Implemented testing for clustering. Hierarchical seems to have a similar
|       problem like LibSVM_OneClass in classifier wrt dimensions in results.
| 
| M	testsuite/python/classifier.py
| M	testsuite/python/clustering.py
| M	testsuite/python/util.py
|  
* commit b67c085d63dc1364b85a2f0034a04ed9b3308ad2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 24 09:57:57 2008 +0000
| 
|     fix rename to ShortRealFeatures
| 
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
|  
* commit 7dbe6eda3756a59380224d5102917d0b5642c8bb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 01:48:14 2008 +0000
| 
|     testsuite:
|     - Created testsuite for static python, only classifier works to a certain
|       extent, though.
| 
| A	testsuite/python/classifier.py
| A	testsuite/python/clustering.py
| A	testsuite/python/distance.py
| A	testsuite/python/distribution.py
| A	testsuite/python/kernel.py
| D	testsuite/python/m_print.py
| A	testsuite/python/preproc.py
| D	testsuite/python/read_mfile.py
| A	testsuite/python/regression.py
| D	testsuite/python/run.sh
| D	testsuite/python/test.py
| M	testsuite/python/test_all.sh
| D	testsuite/python/test_kernels.py
| A	testsuite/python/test_one.py
| D	testsuite/python/test_python
| A	testsuite/python/test_svm_kernel_multiple.py
| A	testsuite/python/util.py
|  
* commit 0571740a0c65a7f84436f79f8fd115f28d3170ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 24 00:26:07 2008 +0000
| 
|     interface:
|     - Set default value in static interface for max_mismatch in
|       WeightedDegreePositionString from 1 to 0 (as in the class' constructor)
| 
| M	src/interface/SGInterface.cpp
|  
* commit ae7484a41e3294540ca097cc80333b982dece5db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 23 20:17:51 2008 +0000
| 
|     fix compilation and warnings caused by my previous commit
| 
| M	src/kernel/GaussianShortRealKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
|  
* commit 2d9cadfffbb3426558f543429487adf65795fe6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 23 20:00:21 2008 +0000
| 
|     add gaussian kernel for shortreal features
| 
| M	src/features/Features.i
| A	src/kernel/GaussianShortRealKernel.cpp
| A	src/kernel/GaussianShortRealKernel.h
| A	src/kernel/GaussianShortRealKernel.i
| M	src/kernel/Kernel.i
|  
* commit dfc79e758c089f2d727708c52d94472f06052bff
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jun 23 19:46:18 2008 +0000
| 
|     interface:
|     - Added command init_random to static interfaces.
| 
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit dd181b658152a349715933a9bb58e6e581b97c75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 21 07:31:12 2008 +0000
| 
|     moving the oligokernel in place - currently only formatting changes.. still way to go before it is working in sg
| 
| A	src/kernel/OligoKernel.cpp
| A	src/kernel/OligoKernel.h
| M	src/lib/Signal.cpp
| M	src/preproc/NormOne.cpp
|  
* commit 0a8844b75522a26e85d668c2959f1e0c51704b2b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 20 16:16:24 2008 +0000
| 
|     remove white borders in multiple svms
| 
| M	examples/python-modular/graphical/multiple_smvs.py
|  
* commit fc86ae0d5239fc82f987252b613ae7e36c693e5f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 20 08:30:28 2008 +0000
| 
|     - document methods in regression/*
|     - update doxyfile to not show methods from inherited classes (its is becoming messy+confusing) and define USE_SVMLIGHT and HAVE_LAPACK/ATLAS to also see these methods documented
| 
| M	doc/Doxyfile
| M	src/NEWS
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit a96927e68571d0766588f0ca04cb5644b9bc6375
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 21:49:10 2008 +0000
| 
|     document preprocessors
| 
| M	src/NEWS
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
|  
* commit 2a68f8a911ef9404b816aa7f3cade3bd3788df51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 09:02:05 2008 +0000
| 
|     document items in base/
| 
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.h
| M	src/lib/Signal.h
|  
* commit 10e9a7750ab10b3d4a0352ce5dd975d8ddca3834
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 08:48:40 2008 +0000
| 
|     document classes in lib/
| 
| M	src/evaluation/PerformanceMeasures.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/ShogunException.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
|  
* commit dbf5baec359d2e090bc45592e2233b6945830a19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 19 06:20:40 2008 +0000
| 
|     remove accidental unconditional active constraint counter increase
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit b956943a955695fe0689d64d2290c1e613f73bd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 22:49:20 2008 +0000
| 
|     looks like there is some problem in the heuristic?
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit b4952fa8af6b7bac97ff53cbcdd060afb7e0b1c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 22:31:47 2008 +0000
| 
|     hopefully fix signal handling:
|     - SVM* / WDKernel* erranously called CSignal::clear() keeping the signal handler active
|     - if a command returned with an error, the signal handler was still set, fix this by removing the signal handler in shogun exception
|     - only use printf in SG_ERROR etc as we are throwing an exception anyway. note that for modular interfaces we need to call CSignal::set_handler(); for all commands that can be expected to run a bit longer
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/lib/ShogunException.cpp
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
|  
* commit 7fc8ac17d95f2507f82baf03d9fb334c10ae67ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 18 21:33:55 2008 +0000
| 
|     also implement two/one norm mkl for linadd
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit ab41b76575b437615c8d7b9b8f6e872c0839606a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 22:08:12 2008 +0000
| 
|     fix index
| 
| M	src/interface/RInterface.cpp
|  
* commit c8e6a46ee35638bfdc551565bf01e158111cefe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 21:29:38 2008 +0000
| 
|     attempt to fix corruption
| 
| M	src/interface/RInterface.cpp
|  
* commit 00d866ca1e47483a1f9dd6cff2c409ccbfbb99a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 20:31:31 2008 +0000
| 
|     potentially fix 1 norm mkl bug
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit ccf5065f06b9d2e60776c35fcf5d3d4b834e13d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 17 09:46:55 2008 +0000
| 
|     merge jonas' changes back to trunk
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIStructure.cpp
| M	src/guilib/GUIStructure.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit be4b5c7abf6a13283c93b89676b5ffff815f2888
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 11:14:58 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 5d950700a3239aedfbce8a1b7788d5d4f4bb3f25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 07:09:13 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 30379df3defdf11154ea1806bf171dad252aa1b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 16 06:47:12 2008 +0000
| 
|     erase the created file
| 
| M	examples/python-modular/read_svmlight_format.py
|  
* commit f3c2cfdf16f7f45fe2f6669534682df9c0835084
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 18:22:43 2008 +0000
| 
|     fix path for octave modular if
| 
| M	src/Makefile
|  
* commit 5d1281e0306adc0b345394d5124911a94f60a59b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 14:26:57 2008 +0000
| 
|     we don't have any r-doc/vignette or the like
| 
| M	src/Makefile
|  
* commit 5408de0617203f218c5aae9c4effb389e4f9f7e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 14:20:14 2008 +0000
| 
|     don't make examples executable
| 
| M	src/Makefile
|  
* commit 20fd79607dd1716ffbd6adbce7260936f3033f2a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 07:25:23 2008 +0000
| 
|     - also set paths for make reference.
|     - make prepare-release doesn't require root access anymore but does testing in /tmp/
| 
| M	Makefile
| M	doc/pages/StaticPythonInterface.mainpage
| M	src/Makefile
|  
* commit fd780600d1f3f825b0082a6b50c5a32a2dd341a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 15 07:13:53 2008 +0000
| 
|     to run tests now do
|     make
|     make install DESTDIR=/tmp/
|     make tests DESTDIR=/tmp/
|     
|     (with DESTDIR optional :-)
| 
| M	examples/cmdline/check.sh
| M	examples/matlab_and_octave/check.sh
| M	src/Makefile
|  
* commit 3351c5935f8682e42e2cf86a145a13aff524409e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 14 13:56:04 2008 +0000
| 
|     - implement 2-norm MKL for non-linadd kernels and add example of how it works in mkl_classify_christmas_star
|     - instead of creating a symlink set octave path to current src dir. this all needs further thinking, maybe it is a good idea to have a general policy like:
|     
|     1. compile (make)
|     2. install (make install)
|     3. test (make tests)
|     
|     thus the install path has to be set in environment variables as the path to shogun:
|     cmdline -> PATH=...
|     octave -> octave -p ...
|     R -> R_PATH==...
|     matlab -> doesn't support this
|     python -> PYTHONPATH=...
|     
|     ... is $DESTDIR/$PYDIR etc
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/matlab_and_octave/mkl_classify_christmas_star.m
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/interface/SGInterface.cpp
|  
* commit 922f3f8a882ed3500789b4957b7f1db44ccebc06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:46:00 2008 +0000
| 
|     fix update-webpage target
| 
| M	Makefile
|  
* commit bf75c7660a8b0a72d77a036b27f06a287691f8bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:34:12 2008 +0000
| 
|     Preparing for new Release shogun_0.6.3
| 
| M	doc/Doxyfile
|  
* commit a97631bf15018ca041c493da171445d4357af7c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:06:15 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 286db84f14d512c463fa062eaec0a1f6faf39099
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 09:03:07 2008 +0000
| 
|     R tests don't run yet, fix stupid error for WDS 3 kernel
| 
| M	src/interface/SGInterface.cpp
| M	testsuite/r-modular/test_all.sh
|  
* commit 854528740d8cac58010534f4201932cb41fdc683
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:51:53 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit ae00a0b415a5e477bec066be06c83d5ef22dcc7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:47:10 2008 +0000
| 
|     R modular examples need to load shogun via library(shogun) now
| 
| M	examples/r-modular/all_classifier.R
| M	examples/r-modular/all_clustering.R
| M	examples/r-modular/all_distance.R
| M	examples/r-modular/all_distribution.R
| M	examples/r-modular/all_kernels.R
| M	examples/r-modular/all_preproc.R
| M	examples/r-modular/all_regression.R
| M	examples/r-modular/first_shot.R
| M	examples/r-modular/libsvm.R
|  
* commit a4550d47b4a50c961624241374cf7d064f6fa9b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 08:46:57 2008 +0000
| 
|     testsuite:
|     - Updated data file for fixed GeodesicMetric.
| 
| M	testsuite/data/distance/GeodesicMetric.m
|  
* commit 4b717708e99adafd185ea87379024147abec5745
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 08:37:37 2008 +0000
| 
|     run R tests with R_PATH set and trap division by zero and acos input outside [-1,+1] range
| 
| M	src/Makefile
| M	src/distance/GeodesicMetric.cpp
|  
* commit 489a5e7fd8c9bf74f378d7a181367737129a5f7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:48:22 2008 +0000
| 
|     run things releative to examples/<if>/ directory not any longer relative to src/
| 
| M	examples/matlab_and_octave/check.sh
| M	examples/octave-modular/check.sh
|  
* commit fa42c4678b75d25c58bcd0c62981374d0c8e289a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:45:35 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 7a7ca8bf4f31247686a3b21b0bf6742a288b73bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:19:56 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 17313560cf711165df269c9850980a2caa93350b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 07:10:10 2008 +0000
| 
|     Add Ocas changes to News.
| 
| M	src/NEWS
|  
* commit 70fe656fbf4c4f346051f466d28cc3cdc554cc07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:09:43 2008 +0000
| 
|     move structure commands to separate group
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5dc03cbc46731e7f2b1594e7957b94892dc2a86f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jun 13 07:06:13 2008 +0000
| 
|     classifier:
|     - Transformed SG_SINFO into SG_ABS_PROGRESS in Ocas.
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/qpssvmlib.cpp
|  
* commit 1ee24dd3e45d09653ccbb1c02443b004fb30853a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 13 07:00:41 2008 +0000
| 
|     merge changes from structure branch
| 
| M	src/NEWS
| M	src/guilib/GUIStructure.h
| M	src/interface/SGInterface.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit d52e3b9230b153701577d7d6159d5472ac2eb6f3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jun 12 18:25:50 2008 +0000
| 
|     classifier:
|     - Made Ocas less verbose, actually modifying the way it prints out error
|       messages.
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
|  
* commit 500520030a9b7c8df03ffabb9b7c357c9c5de28f
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jun 12 10:37:20 2008 +0000
| 
|     -changed distance function to arcos( x*y/sqrt( (x*x) * (y*y) ) )
|     -distance can handle data, which has not be normalized
| 
| M	src/distance/GeodesicMetric.cpp
|  
* commit 357abe0b49436a4bf6505e06602535ab1859c709
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 12 10:32:16 2008 +0000
| 
|     -refresh+resize kernel cache after we actually erease lhs or rhs
|     -fix a bug+warning in octave interface when setting strings
| 
| M	src/NEWS
| M	src/interface/OctaveInterface.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 243fe4f1987843e5ce6670a8e60404f347332cd8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jun 12 02:29:06 2008 +0000
| 
|     testsuite:
|     - Added a test script to run LibSVM multiple times.
| 
| A	testsuite/python-modular/test_svm_kernel_multiple.py
|  
* commit 298ab056953d260f0845fb7a9b9c1963ceecf6f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 23:49:19 2008 +0000
| 
|     minor code cleanup
| 
| M	src/kernel/KernelMachine.cpp
|  
* commit ccba64079fc0cb2ce557170af51e5495a27e2ad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 19:02:28 2008 +0000
| 
|     include test and doc for cmdline interface
| 
| M	Makefile
| M	doc/pages/StaticCommandLineInterface.mainpage
| M	src/Makefile
|  
* commit e690e133b7624e914767b3c647fd436ad61a7912
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 18:51:18 2008 +0000
| 
|     remove data from doxy path
| 
| M	doc/Doxyfile
|  
* commit 3373aa0ef86214f1aa6df91ca2f4eb9407ad3522
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 17:50:16 2008 +0000
| 
|     documentation:
|     - Fixed some doxygen warnings.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/PyramidChi2.h
| M	src/lib/File.h
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
|  
* commit a595c2c1b878df621482f69ffc34dcc59a6a79f7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 17:02:19 2008 +0000
| 
|     - Slightly modified NEWS
|     - updated svn:ignores in various places.
| 
| M	src/NEWS
|  
* commit 98342f0767e47df7c16b59b15ce88c916c86f383
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:52:20 2008 +0000
| 
|     add a build test target and clean up things
| 
| M	Makefile
|  
* commit 59c54fae228340fe48382565622869afda5bd6fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:44:17 2008 +0000
| 
|     updated reference documentation
| 
| M	doc/pages/StaticOctaveInterface.mainpage
| M	doc/pages/StaticPythonInterface.mainpage
| M	doc/pages/StaticRInterface.mainpage
|  
* commit 6030837ce39c4e1fb0e5e5dd07ef6ae951c26107
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 16:18:38 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/NEWS
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f50454c27e412dddc8af9be312eb47216f894b6a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 14:47:27 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/NEWS
|  
* commit 0d8d589ccc563639587bf549e52e6a616dab2808
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:50:30 2008 +0000
| 
|     run make install as root (via sudo)
| 
| M	Makefile
|  
* commit 864d2b2502d408d4c8fe4a5e08a78dc7f7b386b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:38:22 2008 +0000
| 
|     updated changelog
| 
| M	src/ChangeLog
|  
* commit 6c72ceaf17a29570df91636fb8993a533fdf02e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:28:44 2008 +0000
| 
|     remove R package creation - we do this natively via make && make install now
| 
| M	Makefile
|  
* commit 7031818bb20d4d645a829f88d0f75eab34d9bda1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 13:03:56 2008 +0000
| 
|     fix a couple of crashers due to uninited tries by making sure tables that are cleaned up on cleanup() are inited on init() - this is yet another side effect of correctly removing lhs/rhs and calling kernel cleanup()
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Trie.h
|  
* commit 8a0ebe49fad60be5e0472f5002159e8f709be285
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 11 10:42:29 2008 +0000
| 
|     - add a function remove_lhs_and_rhs() which simply calls remove_rhs() and remove_lhs() in the right order (recall that the case lhs==rhs is valid and currently needs extra treatment)
|     - add assertions for WDS kernel 2/3
| 
| M	src/interface/SGInterface.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit f19bf81c2583c25243780879fc9c301d0e03c624
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 08:25:06 2008 +0000
| 
|     kernel/features:
|     - Previous method to check for vector lengths was wrong.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 971fd67ee1d152326ec65ab9cf212e07668dd55a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jun 11 07:52:39 2008 +0000
| 
|     kernel:
|     - Possibly fixed an issue with regression and kernel cache.
| 
| M	src/kernel/Kernel.cpp
|  
* commit 46d68498e345752fbe1308ce68e3f4d14675ae71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jun 10 21:01:55 2008 +0000
| 
|     kernel/features:
|     - Check that all vectors have the same length when new features are set for
|       WeightedDegreeString kernel.
| 
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 94fbeea362cbfa909aa62d742b21e8646ce5ee30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 10 12:25:17 2008 +0000
| 
|     try to get nd-array support also for python and octave (dummy for cmdline and R) + a couple of compile fixes
| 
| M	src/guilib/GUIStructure.cpp
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/lib/Mathematics.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 248e2724484a000eec47a0c1c0ae97e1507b19ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 10 08:30:03 2008 +0000
| 
|     fix compile warnings, logical and mismatch
| 
| M	src/structure/DynProg.cpp
|    
*   commit 7cf61105796374673a88d87c68463aa342639fd2
|\  Merge: efddcbb faec6fb
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:18:33 2008 +0000
| | 
| |     merge jonas' structure changes back to svn-trunk
| |   
| * commit faec6fb1f53d3619283012cae63dd09621ecfa6f
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu Jun 5 08:47:26 2008 +0000
| | 
| |     -- som debug-code removed
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| |   
| * commit edc62205107a075ce04272f807ae7b54820acdac
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Wed Jun 4 12:04:22 2008 +0000
| | 
| |     -- viterbi decoding seems to work now
| |     -- still some debug-code left
| |     -- calculation of the derivative not yet implemented
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| |   
| * commit 455a6368cdc75cb3e40092345a62c72260fda92a
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 2 10:04:19 2008 +0000
| | 
| |      still some bugs there
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit f08be30d0779971cf72739c705489588685af17c
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Mon Jun 2 09:26:29 2008 +0000
| | 
| |      still some bugs there
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| | M	src/structure/Plif.h
| |   
| * commit 99cc6e5d7ec253c36416b6739cd986b44be04bab
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Thu May 29 09:22:34 2008 +0000
| | 
| |     -- new function compute_plif_matrix added that
| |        generates the plif_matrix from transition_pointers
| |        and the penalty array (loaded from ui_structure)
| |     -- plif_matrix is stored in ui_structure
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 51a885bccc102c200872fc1dd292da66ccad5ccd
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 07:03:11 2008 +0000
| | 
| |     add ND-array support (for matlab only currently)
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/MatlabInterface.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/Plif.h
| |   
| * commit a0fa7c8d4e59025e06634bef79da4ef3643e2997
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 15:03:34 2008 +0000
| | 
| |     -- new function for precomputing content features is now implemented, but not yet tested
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 420def98996b893019f5a829906644042042edd0
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 13:41:14 2008 +0000
| | 
| |     set_plif_struct and get_plif_struct are now working and seem to be correct (input and output are equal)
| | 
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/structure/DynProg.cpp
| |   
| * commit f6ec6260d8fbee566515aba2f172b566c606b561
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 27 09:47:17 2008 +0000
| | 
| |     still not working, but now at least compiling
| | 
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/structure/DynProg.cpp
| | M	src/structure/DynProg.h
| | M	src/structure/Plif.cpp
| | M	src/structure/Plif.h
| | M	src/structure/PlifArray.cpp
| | M	src/structure/PlifArray.h
| | M	src/structure/PlifBase.h
| | M	src/structure/Structure.i
| |   
| * commit 3e3e585875ac96d0b919e41c8a7fb8ec77de4086
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Wed May 21 12:57:56 2008 +0000
| | 
| |     -- add get_plif_struct function to SGInterface
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIStructure.cpp
| | M	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 825cd6c699cc676aff9a2483f86084ad3e987f32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 23:55:26 2008 +0000
| | 
| |     some progress on separating out structural stuff
| | 
| | A	src/guilib/GUIStructure.cpp
| | A	src/guilib/GUIStructure.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit 1c612c6bcb853b4f69ea08e3cb677fcdcdb34bea
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 18:40:47 2008 +0000
| | 
| |     -- it compiles now, but nothing more
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit cf255874d5c10669fa9944e1682111288791da97
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 18:22:25 2008 +0000
| | 
| |     lots of structure fixes
| | 
| | M	src/features/StringFeatures.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
| * commit d2829a6829e90fc1db350f09621b660576105bdc
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 17:46:29 2008 +0000
| | 
| |     fix
| | 
| | M	src/interface/SGInterface.h
| |   
| * commit 3575852258fa4f7227db6dc7d5f92ab5ad787d61
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 17:41:40 2008 +0000
| | 
| |     -- transfered the functionality from old best_path_trans interface to the new
| |        one, but everything not yet working
| | 
| | M	src/interface/SGInterface.cpp
| |   
| * commit ca6a53fd7ccbb760bb1d236c8831181de3539113
| | Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| | Date:   Tue May 20 15:42:32 2008 +0000
| | 
| |     -- firts bit of code for set_plif_struct
| |        -> construct a CPlif array
| |     
| |     -- starting to implement interface for best_path_trans
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| |   
* | commit efddcbb314b3e0978fa332f93100bbbcaec99a11
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:01:50 2008 +0000
| | 
| |     fix a couple of gcc-4.3 compiler warnings
| | 
| | M	src/lib/Mathematics.h
| | M	src/structure/DynProg.cpp
| |   
* | commit c88edd678beb8eedcf15a41b52f9c74e89f05a02
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 08:00:22 2008 +0000
| | 
| |     speed up check_commwordkernel_memleak and add a file for read_svmlight_format to actually do something :)
| | 
| | A	examples/data/train_sparsereal.light
| | M	examples/python-modular/check_commwordkernel_memleak.py
| | M	examples/python-modular/read_svmlight_format.py
| |   
* | commit a1b8179ae0016b1edeedd9668ee6cf45b9d36ca4
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:35:43 2008 +0000
| | 
| |     only svmlight/svrlight do MKL
| | 
| | M	examples/r/mkl_classify_christmas_star.R
| | M	examples/r/mkl_regression_3sine_waves.R
| | M	examples/r/mkl_regression_sine.R
| |   
* | commit b31f9143009b47ca4d67ac332c9cd3d9ae68d0ee
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:31:46 2008 +0000
| | 
| |     speed up wds kernel example and create symlink to sg.oct if sg is not found in path
| | 
| | M	examples/matlab_and_octave/check.sh
| | M	examples/matlab_and_octave/wds_kernel.m
| |   
* | commit c89af005371e5c1913a78b16386f087687415ea3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 07:19:52 2008 +0000
| | 
| |     unset signal handler as soon as we enter handle() to fix an issue when ctrl+c was pressed more than once in a row
| | 
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| | M	src/lib/Mathematics.h
| | M	src/lib/Signal.cpp
| |   
* | commit d48bbf0404836f79081420bad2784b774458e636
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue Jun 10 06:40:59 2008 +0000
| | 
| |     remove double error printing
| | 
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/RInterface.cpp
| |   
* | commit be261603d0f300b0e2d6fc0d4b890261de6f61c6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 22:56:21 2008 +0000
| | 
| |     port mkl examples to R
| | 
| | A	examples/r/mkl_classify_christmas_star.R
| | D	examples/r/mkl_classify_christmas_star.m
| | A	examples/r/mkl_regression_3sine_waves.R
| | D	examples/r/mkl_regression_3sine_waves.m
| | A	examples/r/mkl_regression_sine.R
| | D	examples/r/mkl_regression_sine.m
| |   
* | commit 22480633ab0e6155d4b6e0998a07002d7965f819
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 17:02:41 2008 +0000
| | 
| |     testsuite:
| |     - Added linadd and batch computation to SVMs using WD/WDS kernels.
| | 
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA_True_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True.m
| | A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA_True_True.m
| | M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| | M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| | M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| | M	testsuite/generator/classifier.py
| | M	testsuite/python-modular/classifier.py
| |   
* | commit 10c8766a1c2278b84a411b0b94f714534472d742
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 16:02:40 2008 +0000
| | 
| |     fix error msg when command is mistyped
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 57865e418f699a619bee95e26c843b6649a63b2d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 9 11:05:13 2008 +0000
| | 
| |     - add a make reference to automagically create pages/Static*Interface.mainpage command references
| |     - add option to disable syntax hilighting
| |     - attempt to compile when atlas takes over lapack functions completely (suse build problems...)
| | 
| | M	Makefile
| | D	doc/data/help_all.txt
| | A	doc/pages/StaticCommandLineInterface.mainpage
| | M	doc/pages/StaticInterfaces.mainpage
| | A	doc/pages/StaticOctaveInterface.mainpage
| | A	doc/pages/StaticPythonInterface.mainpage
| | A	doc/pages/StaticRInterface.mainpage
| | M	examples/matlab_and_octave/check.sh
| | A	examples/r/mkl_classify_christmas_star.m
| | D	examples/r/mkl_lin_sine_mix.R
| | A	examples/r/mkl_regression_3sine_waves.m
| | A	examples/r/mkl_regression_sine.m
| | D	examples/r/mkl_sine_regression.R
| | D	examples/r/x-max_class.R
| | M	src/Makefile
| | M	src/configure
| | M	src/guilib/GUICommands.h
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | A	src/interface/SyntaxHighLight.h
| | M	src/lib/io.cpp
| |   
* | commit aa2356bb693122051be78804be6de283015bca5c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 05:41:40 2008 +0000
| | 
| |     documentation:
| |     - Added a list of all help commands to the static interfaces' mainpage.
| | 
| | M	doc/Doxyfile
| | A	doc/data/help_all.txt
| | M	doc/pages/StaticInterfaces.mainpage
| |   
* | commit 1eb1f658f054ae8b2ed47666babb394be21678ed
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 05:40:48 2008 +0000
| | 
| |     documentation:
| |     - Added help command 'all' to give a brief listing of all commands.
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 08dffad54e0a7e9e4c11ea753ee25f66327a5769
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 9 04:28:43 2008 +0000
| | 
| |     testsuite:
| |     - Added degree 1 to WD and WDS kernels.
| | 
| | A	testsuite/data/kernel/WeightedDegreePositionString_60_1_DNA.m
| | A	testsuite/data/kernel/WeightedDegreeString_60_1_DNA.m
| | M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| | M	testsuite/generator/config.py
| | M	testsuite/generator/kernel.py
| |   
* | commit c37903651912c66fd7880fd18e06def312b200ce
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 23:22:15 2008 +0000
| | 
| |     examples/interface:
| |     - Interface cmdline now can read cube matrices.
| | 
| | M	examples/cmdline/all_distribution.sg
| | M	src/interface/CmdLineInterface.cpp
| |   
* | commit dc18832ab045312b2f69ea907d45db25e5e23936
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 21:34:13 2008 +0000
| | 
| |     examples:
| |     - Renamed oneclass to twoclass labels.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_regression.sg
| | D	examples/data/label_train_oneclass.dat
| | A	examples/data/label_train_twoclass.dat
| | M	examples/matlab_and_octave/all_classifier.m
| | M	examples/matlab_and_octave/all_regression.m
| | M	examples/octave-modular/all_classifier.m
| | M	examples/octave-modular/all_regression.m
| | M	examples/python-modular/all_classifier.py
| | M	examples/python-modular/all_regression.py
| | M	examples/python/all_classifier.py
| | M	examples/python/all_regression.py
| | M	examples/r-modular/all_classifier.R
| | M	examples/r-modular/all_regression.R
| | M	examples/r/all_classifier.R
| | M	examples/r/all_regression.R
| |   
* | commit 0dd1cef5130b08b80cc1f4357a548723b2454a5c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 08:15:28 2008 +0000
| | 
| |     examples:
| |     - Corrected erroneous data file and enabled sparse linear classifiers.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/data/fm_train_sparsereal.dat
| |   
* | commit bcf4cac8d387422bda9abdccf40050e50b275571
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri Jun 6 01:26:57 2008 +0000
| | 
| |     examples:
| |     - Enabled examples for sparse real features with new data set. Something makes
| |       shogun segfault within classifiers, though.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_kernels.sg
| | D	examples/data/fm_real_sparse.dat
| | A	examples/data/fm_test_sparsereal.dat
| | A	examples/data/fm_train_sparsereal.dat
| | M	src/interface/CmdLineInterface.cpp
| |   
* | commit 59b79dfa19bfe125e42f95990bff4b90b7be55e7
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 21:02:33 2008 +0000
| | 
| |     examples
| |     - Adjusted examples for cmdline interface to use print command and disabled
| |       elements which are not working yet.
| | 
| | M	examples/cmdline/all_classifier.sg
| | M	examples/cmdline/all_clustering.sg
| | M	examples/cmdline/all_distance.sg
| | M	examples/cmdline/all_distribution.sg
| | M	examples/cmdline/all_kernels.sg
| | M	examples/cmdline/all_preproc.sg
| | M	examples/cmdline/all_regression.sg
| |   
* | commit 278933ce4fc9c420e9660cee1ee0f51c6cdc999f
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 20:40:18 2008 +0000
| | 
| |     interface
| |     - Cmdline interface now tranposes matrices read from a file.
| | 
| | M	src/guilib/GUIClassifier.cpp
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| |   
* | commit 8254d28e82fbf521dbf4e2e498c7e5b38d22afe9
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu Jun 5 20:37:13 2008 +0000
| | 
| |     interface:
| |     - Added command print to print messages via SG_PRINT.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit 9a01fe487fa35de8dfb75ce138f57feeca378f31
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 23:02:13 2008 +0000
| | 
| |     testsuite:
| |     - Added testfile for cmdline interface previously moved from examples.
| | 
| | A	testsuite/cmdline/test.sg
| |   
* | commit 46aad9dfdf6c10659f17c1b2529adabc091147b0
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 23:01:34 2008 +0000
| | 
| |     examples:
| |     - Added examples for command line interface. Most are unfortunately not
| |       working yet due to braindamage with column/row vectors.
| | 
| | A	examples/cmdline/all_classifier.sg
| | A	examples/cmdline/all_clustering.sg
| | A	examples/cmdline/all_distance.sg
| | A	examples/cmdline/all_distribution.sg
| | A	examples/cmdline/all_kernels.sg
| | A	examples/cmdline/all_preproc.sg
| | A	examples/cmdline/all_regression.sg
| | D	examples/cmdline/libsvm.sg
| | D	examples/cmdline/test.sg
| | D	examples/data/fm_real.dat
| | D	examples/data/fm_stringchar_dna.dat
| | D	examples/data/fm_stringchar_dnamatrix.dat
| | D	examples/data/label_test.dat
| | D	examples/data/label_train.dat
| |   
* | commit 3dcd7f33a989fafe33a102129e8c5e29a5e01c8c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 18:55:04 2008 +0000
| | 
| |     examples:
| |     - Examples for r-modular now use data files (untested, though).
| | 
| | M	examples/r-modular/all_classifier.R
| | M	examples/r-modular/all_clustering.R
| | M	examples/r-modular/all_distance.R
| | M	examples/r-modular/all_distribution.R
| | M	examples/r-modular/all_kernels.R
| | M	examples/r-modular/all_preproc.R
| | M	examples/r-modular/all_regression.R
| | M	examples/r-modular/check.sh
| | M	examples/r/all_distribution.R
| |   
* | commit 5ae31ca3711a69adb89ceadb809c5a94d5485232
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 18:24:24 2008 +0000
| | 
| |     examples:
| |     - Examples for r now use data files (with a bit of cheating for DNA train
| |       labels)
| | 
| | A	examples/data/label_train_dna42.dat
| | M	examples/r/all_classifier.R
| | M	examples/r/all_clustering.R
| | M	examples/r/all_distance.R
| | M	examples/r/all_distribution.R
| | M	examples/r/all_kernels.R
| | M	examples/r/all_preproc.R
| | M	examples/r/all_regression.R
| | M	examples/r/check.sh
| |   
* | commit 549b0ddd7bb7745b0f1ec5da1ea3cf811fc6f07d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 15:38:39 2008 +0000
| | 
| |     support cplex11
| | 
| | M	src/configure
| |   
* | commit f0526bd49d887035797acf4201bf6bae95c538b1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 14:44:34 2008 +0000
| | 
| |     at least add an assertion that lhs!=NULL and totdoc>0
| | 
| | M	src/kernel/Kernel.cpp
| |   
* | commit 74e554381e4c009cc5943fe0f5809f5a0dc83a8c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed Jun 4 14:43:39 2008 +0000
| | 
| |     clarify that MKL in configure denotes Intel MKL
| | 
| | M	src/configure
| |   
* | commit fba98d103593515355a46016135bc2a8e3521eb9
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:54:42 2008 +0000
| | 
| |     examples:
| |     - Applied a cosmetic change to clustering example of octave-modular.
| | 
| | M	examples/octave-modular/all_clustering.m
| |   
* | commit 2cb0c9cbc0246b3dc13074648990e6e494d72485
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:28:39 2008 +0000
| | 
| |     examples:
| |     - Corrected inconsistent naming of cube data files.
| | 
| | D	examples/data/fm_cube_test.dat
| | D	examples/data/fm_cube_train.dat
| | A	examples/data/fm_test_cube.dat
| | A	examples/data/fm_train_cube.dat
| | M	examples/python-modular/all_distribution.py
| | M	examples/python-modular/all_kernels.py
| | M	examples/python/all_distribution.py
| |   
* | commit b2d53a2adc0c06d1871c429499948b7898281800
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:22:23 2008 +0000
| | 
| |     examples:
| |     - Updated examples for python interface to use cubes from files, the new
| |       tool.load.LoadMatrix and other minor changes.
| | 
| | M	examples/python/all_classifier.py
| | M	examples/python/all_clustering.py
| | M	examples/python/all_distance.py
| | M	examples/python/all_distribution.py
| | M	examples/python/all_kernels.py
| | M	examples/python/all_preproc.py
| | M	examples/python/all_regression.py
| | M	examples/python/tools/load.py
| |   
* | commit 2f857a81597a6f43613a5b556a7162ffec6d478b
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:20:53 2008 +0000
| | 
| |     examples:
| |     - Made 'make check_examples' work again for python-modular.
| | 
| | M	examples/python-modular/check.sh
| |   
* | commit c1950b32aeda2cafc7c6b0655904d0a8a3b279a2
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:11:23 2008 +0000
| | 
| |     examples:
| |     - Examples for python-modular now use data files.
| | 
| | M	examples/python-modular/all_classifier.py
| | M	examples/python-modular/all_clustering.py
| | M	examples/python-modular/all_distance.py
| | M	examples/python-modular/all_distribution.py
| | M	examples/python-modular/all_kernels.py
| | M	examples/python-modular/all_preproc.py
| | M	examples/python-modular/all_regression.py
| | A	examples/python-modular/tools/__init__.py
| | A	examples/python-modular/tools/load.py
| |   
* | commit d2733cd9ab97e559a29813012daf87ab1a11b103
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed Jun 4 00:10:48 2008 +0000
| | 
| |     examples:
| |     - Added data files for cube representations.
| | 
| | A	examples/data/fm_cube_test.dat
| | A	examples/data/fm_cube_train.dat
| |   
* | commit 8914e2d9c3b0d4aab1287c338b2da232cdea76c5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 20:45:55 2008 +0000
| | 
| |     kernel:
| |     - Fixed an issue with unproperly referenced distance.
| | 
| | M	src/kernel/DistanceKernel.cpp
| |   
* | commit f2bfeede4d47aeab67bfc6d2f540dd48c938fb2e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 20:35:34 2008 +0000
| | 
| |     kernel:
| |     - Fixed an issue about missing features (another problem which needs to be
| |       addressed on this kernel at some time).
| | 
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/CustomKernel.h
| |   
* | commit 94c270c544da14c25b07567a1925c166d9855c4e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:24:32 2008 +0000
| | 
| |     examples
| |     - Examples now read data from files for interface python.
| | 
| | M	examples/python/all_classifier.py
| | M	examples/python/all_clustering.py
| | M	examples/python/all_distance.py
| | M	examples/python/all_distribution.py
| | M	examples/python/all_kernels.py
| | M	examples/python/all_preproc.py
| | M	examples/python/all_regression.py
| | M	examples/python/check.sh
| | A	examples/python/tools/__init__.py
| | A	examples/python/tools/load.py
| |   
* | commit dcc3afda3ff3d5e07d22a23a76f1a810202ee793
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:23:44 2008 +0000
| | 
| |     examples:
| |     - Data for word features used different item seperator than other data types.
| | 
| | M	examples/data/fm_test_word.dat
| | M	examples/data/fm_train_word.dat
| |   
* | commit ec52049557f3c3529154ee7a8306c43df818090e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue Jun 3 00:22:45 2008 +0000
| | 
| |     examples:
| |     - Slightly modified octave/octave-modular examples.
| | 
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/octave-modular/all_kernels.m
| |   
* | commit 9d7d36cd189b238eaa44bd3dd9a6222f947958a4
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:43:56 2008 +0000
| | 
| |     examples:
| |     - Added data files for feature matrices of type byte.
| | 
| | A	examples/data/fm_test_byte.dat
| | A	examples/data/fm_train_byte.dat
| |   
* | commit f6df156b703a1433ccfef92bdf550d95a7dffcc5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:43:17 2008 +0000
| | 
| |     examples:
| |     - Examples for octave-modular now use files in data/.
| | 
| | M	examples/octave-modular/all_classifier.m
| | M	examples/octave-modular/all_clustering.m
| | M	examples/octave-modular/all_distance.m
| | M	examples/octave-modular/all_distribution.m
| | M	examples/octave-modular/all_kernels.m
| | M	examples/octave-modular/all_preproc.m
| | M	examples/octave-modular/all_regression.m
| | A	examples/octave-modular/tools/load_matrix.m
| |   
* | commit ee6d5599c8edaa6c2057edda3a135fc689ac62ea
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:42:46 2008 +0000
| | 
| |     examples:
| |     - Little adjustments to examples for static matlab/octave.
| | 
| | M	examples/matlab_and_octave/all_clustering.m
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/matlab_and_octave/all_regression.m
| |   
* | commit c97c8dd6b974388952f0285f8eea393f657bb6e5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon Jun 2 20:40:59 2008 +0000
| | 
| |     kernel:
| |     - Fixed a segfault issue on kernel cleanup when lhs == rhs.
| | 
| | M	src/kernel/Kernel.cpp
| |   
* | commit 36c5bfdbc1533ccd3d659d18016273872588ae32
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Mon Jun 2 05:59:24 2008 +0000
| | 
| |     fix example (matrix size incorrect)
| | 
| | M	examples/r/mkl_lin_sine_mix.R
| |   
* | commit 76cc437023c453bb8fd96ca932bea4c72d678ba5
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 21:09:19 2008 +0000
| | 
| |     examples:
| |     - Improved extra examples for r a bit.
| | 
| | M	examples/r/mkl_lin_sine_mix.R
| | M	examples/r/mkl_sine_regression.R
| | M	examples/r/string_kernel.R
| | M	examples/r/wd_mkl.R
| | M	examples/r/x-max_class.R
| |   
* | commit e7af48d4fe024a5c03e9f09bd482711219f5a213
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 19:54:22 2008 +0000
| | 
| |     examples/testsuite
| |     - Made 'make tests' run smoother.
| | 
| | M	examples/cmdline/check.sh
| | A	examples/libshogun/Makefile
| | D	examples/libshogun/examples/Makefile
| | D	examples/libshogun/examples/rbf_svm.cpp
| | A	examples/libshogun/rbf_svm.cpp
| | M	examples/matlab_and_octave/check.sh
| | M	examples/octave-modular/check.sh
| | M	examples/python-modular/check.sh
| | M	examples/python/check.sh
| | M	examples/r-modular/check.sh
| | M	examples/r/check.sh
| | A	testsuite/cmdline/test_all.sh
| | A	testsuite/libshogun/test_all.sh
| | A	testsuite/matlab_and_octave/test_all.sh
| | A	testsuite/octave-modular/test_all.sh
| | A	testsuite/python/test_all.sh
| | A	testsuite/r-modular/test_all.sh
| | A	testsuite/r/test_all.sh
| |   
* | commit 3b15544ab77796fae8c9e09befad79928f85c488
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 15:50:13 2008 +0000
| | 
| |     call remove_rhs() and remove_lhs() in cleanup()
| | 
| | M	src/kernel/AUCKernel.cpp
| | M	src/kernel/AUCKernel.h
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/Chi2Kernel.h
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/ConstKernel.h
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/DiagKernel.cpp
| | M	src/kernel/DiagKernel.h
| | M	src/kernel/DistanceKernel.cpp
| | M	src/kernel/DistanceKernel.h
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/GaussianKernel.cpp
| | M	src/kernel/GaussianKernel.h
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/Kernel.h
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearKernel.cpp
| | M	src/kernel/LinearStringKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.h
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PolyMatchWordKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SalzbergWordKernel.cpp
| | M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseLinearKernel.cpp
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/kernel/WordMatchKernel.h
| |   
* | commit 65507c00e2bac1b540583673fed73e15a1eac745
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 15:14:47 2008 +0000
| | 
| |     colorify outputs
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit c74a9891e840bf3750d2b9786dd8bec29ff5b870
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 12:15:19 2008 +0000
| | 
| |     add command to enable progress for static interfaces ( progress ON / progress OFF )
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit ca2cb04f78b9661109eabf1d5cbd0a0c0309fb13
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 07:53:16 2008 +0000
| | 
| |     update news
| | 
| | M	src/NEWS
| |   
* | commit af0b77f875ed9a3ba9d19b26ddc4af924c69c465
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 07:37:02 2008 +0000
| | 
| |     check in forgotten .r-install.sh file and finish make install for r-modular
| | 
| | A	src/.r-install.sh
| | M	src/Makefile
| |   
* | commit e400d302bf1679db0ceaa86c6772f416508ddd1f
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 01:32:59 2008 +0000
| | 
| |     make install for r-modular half working
| | 
| | M	src/Makefile
| |   
* | commit e586322fd651d7eb875b095a34bf95239fa4d452
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 30 01:06:14 2008 +0000
| | 
| |     get static R interface of shogun to install via make install again
| | 
| | M	src/Makefile
| | M	src/configure
| |   
* | commit 6b45187c30b19c0b6e3efb1c3be313be0dec14d1
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:16:45 2008 +0000
| | 
| |     - Updated README in /.
| | 
| | M	README
| |   
* | commit 450423f0dc05cf77194647b2bbaabec4663777e7
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:13:48 2008 +0000
| | 
| |     examples:
| |     - Somehow the old data/ directory had been forgotten previously.
| | 
| | D	data/fm_real.dat
| | D	data/fm_real_sparse.dat
| | D	data/fm_stringchar_dna.dat
| | D	data/fm_stringchar_dnamatrix.dat
| | D	data/fm_test_real.dat
| | D	data/fm_train_real.dat
| | D	data/label_test.dat
| | D	data/label_train.dat
| |   
* | commit c4f80973c8fef74950c1873001ef87560f8fcb80
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 30 00:13:21 2008 +0000
| | 
| |     examples:
| |     - matlab and octave explicit examples now use static data repository.
| | 
| | A	examples/data/fm_test_dna.dat
| | M	examples/data/fm_test_real.dat
| | A	examples/data/fm_test_word.dat
| | A	examples/data/fm_train_dna.dat
| | M	examples/data/fm_train_real.dat
| | A	examples/data/fm_train_word.dat
| | A	examples/data/label_train_dna.dat
| | A	examples/data/label_train_multiclass.dat
| | A	examples/data/label_train_oneclass.dat
| | M	examples/matlab_and_octave/all_classifier.m
| | M	examples/matlab_and_octave/all_clustering.m
| | M	examples/matlab_and_octave/all_distance.m
| | M	examples/matlab_and_octave/all_distribution.m
| | M	examples/matlab_and_octave/all_kernels.m
| | M	examples/matlab_and_octave/all_preproc.m
| | M	examples/matlab_and_octave/all_regression.m
| | A	examples/matlab_and_octave/tools/load_matrix.m
| |   
* | commit b75b3cb4e063b1a442cae37a359358e9aa86e482
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 29 20:51:49 2008 +0000
| | 
| |     classifier:
| |     - Made Perceptron spit out a warning, instead of info when not converged.
| | 
| | M	src/classifier/Perceptron.cpp
| |   
* | commit 32a2cab4f730b4c9de05757f2588826030da9649
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 17:29:37 2008 +0000
| | 
| |     fix a memory leak in set_custom_kernel
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit b20ef9d9ed5cfbaa7ffd84c2d429c96870b9f72a
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 29 07:37:03 2008 +0000
| | 
| |     - Killed r/ (updates to Makefile to follow).
| | 
| | A	examples/r/mkl_lin_sine_mix.R
| | A	examples/r/mkl_sine_regression.R
| | A	examples/r/string_kernel.R
| | A	examples/r/wd_mkl.R
| | A	examples/r/x-max_class.R
| | D	r/Makefile
| | D	r/README.txt
| | D	r/examples/all_classifier.R
| | D	r/examples/all_clustering.R
| | D	r/examples/all_distance.R
| | D	r/examples/all_distribution.R
| | D	r/examples/all_kernels.R
| | D	r/examples/all_preproc.R
| | D	r/examples/all_regression.R
| | D	r/examples/graphical/hmm.R
| | D	r/examples/graphical/svm_classification.R
| | D	r/examples/graphical/svr_regression.R
| | D	r/sg/COPYING
| | D	r/sg/DESCRIPTION
| | D	r/sg/R/shogun.R
| | D	r/sg/R/zzz.R
| | D	r/sg/demo/00Index
| | D	r/sg/demo/mkl_lin_sine_mix.R
| | D	r/sg/demo/mkl_sine_regression.R
| | D	r/sg/demo/string_kernel.R
| | D	r/sg/demo/wd_mkl.R
| | D	r/sg/demo/x-max_class.R
| | D	r/sg/inst/doc/manual.pdf
| | D	r/sg/inst/doc/sg.Rnw
| | D	r/sg/tests/startup.R
| | D	r/testcases/read_mfile.R
| | D	r/testcases/run.sh
| | D	r/testcases/test_R.R
| | D	r/testcases/test_kernels.R
| |   
* | commit b1757962635a0590f81bf57a1de7a35c63d01f3d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 06:07:19 2008 +0000
| | 
| |     on clean also rm .RData files
| | 
| | M	src/Makefile
| |   
* | commit f6829ab1343ca6ff43d682e75deb929c661f1321
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 29 06:03:53 2008 +0000
| | 
| |     move forgotton libshogun to examples
| | 
| | A	examples/libshogun/examples/Makefile
| | A	examples/libshogun/examples/rbf_svm.cpp
| | D	libshogun/examples/Makefile
| | D	libshogun/examples/rbf_svm.cpp
| |   
* | commit f382b87f7584f353a719affd0e38814462924a02
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 20:28:34 2008 +0000
| | 
| |     - Big move of testcases/examples.
| | 
| | D	cmdline/check_examples.sh
| | D	cmdline/examples/data/fm_real.dat
| | D	cmdline/examples/data/fm_real_sparse.dat
| | D	cmdline/examples/data/fm_stringchar_dna.dat
| | D	cmdline/examples/data/fm_stringchar_dnamatrix.dat
| | D	cmdline/examples/data/fm_test_real.dat
| | D	cmdline/examples/data/fm_train_real.dat
| | D	cmdline/examples/data/label_test.dat
| | D	cmdline/examples/data/label_train.dat
| | D	cmdline/examples/libsvm.sg
| | D	cmdline/examples/test.sg
| | A	data/fm_real.dat
| | A	data/fm_real_sparse.dat
| | A	data/fm_stringchar_dna.dat
| | A	data/fm_stringchar_dnamatrix.dat
| | A	data/fm_test_real.dat
| | A	data/fm_train_real.dat
| | A	data/label_test.dat
| | A	data/label_train.dat
| | A	examples/cmdline/check.sh
| | A	examples/cmdline/libsvm.sg
| | A	examples/cmdline/test.sg
| | A	examples/data/fm_real.dat
| | A	examples/data/fm_real_sparse.dat
| | A	examples/data/fm_stringchar_dna.dat
| | A	examples/data/fm_stringchar_dnamatrix.dat
| | A	examples/data/fm_test_real.dat
| | A	examples/data/fm_train_real.dat
| | A	examples/data/label_test.dat
| | A	examples/data/label_train.dat
| | A	examples/matlab
| | A	examples/matlab_and_octave/all_classifier.m
| | A	examples/matlab_and_octave/all_clustering.m
| | A	examples/matlab_and_octave/all_distance.m
| | A	examples/matlab_and_octave/all_distribution.m
| | A	examples/matlab_and_octave/all_kernels.m
| | A	examples/matlab_and_octave/all_preproc.m
| | A	examples/matlab_and_octave/all_regression.m
| | A	examples/matlab_and_octave/check.sh
| | A	examples/matlab_and_octave/graphical/cluster_hierarchical.m
| | A	examples/matlab_and_octave/graphical/cluster_kmeans.m
| | A	examples/matlab_and_octave/graphical/entropy.m
| | A	examples/matlab_and_octave/graphical/hmm.m
| | A	examples/matlab_and_octave/graphical/lda_classification.m
| | A	examples/matlab_and_octave/graphical/local_alignment_kernel.m
| | A	examples/matlab_and_octave/graphical/mkl_pseudo_dna.m
| | A	examples/matlab_and_octave/graphical/spec_interp.m
| | A	examples/matlab_and_octave/graphical/svm_classification.m
| | A	examples/matlab_and_octave/graphical/svm_multiclass.m
| | A	examples/matlab_and_octave/graphical/svr_regression.m
| | A	examples/matlab_and_octave/graphical/test_gnpp_svm.m
| | A	examples/matlab_and_octave/graphical/test_poim_wds.m
| | A	examples/matlab_and_octave/graphical/test_regression.m
| | A	examples/matlab_and_octave/graphical/test_regression_mkl.m
| | A	examples/matlab_and_octave/graphical/test_spec_interp.m
| | A	examples/matlab_and_octave/graphical/test_svm_multiclass.m
| | A	examples/matlab_and_octave/graphical/test_wd_wds_parallel.m
| | A	examples/matlab_and_octave/graphical/wds_consensus.m
| | A	examples/matlab_and_octave/graphical/wds_shift_interp.m
| | A	examples/matlab_and_octave/legacy/all_classifier.m
| | A	examples/matlab_and_octave/legacy/all_clustering.m
| | A	examples/matlab_and_octave/legacy/all_distance.m
| | A	examples/matlab_and_octave/legacy/all_distribution.m
| | A	examples/matlab_and_octave/legacy/all_kernels.m
| | A	examples/matlab_and_octave/legacy/all_preproc.m
| | A	examples/matlab_and_octave/legacy/all_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/cluster_hierarchical.m
| | A	examples/matlab_and_octave/legacy/graphical/cluster_kmeans.m
| | A	examples/matlab_and_octave/legacy/graphical/entropy.m
| | A	examples/matlab_and_octave/legacy/graphical/hmm.m
| | A	examples/matlab_and_octave/legacy/graphical/lda_classification.m
| | A	examples/matlab_and_octave/legacy/graphical/local_alignment_kernel.m
| | A	examples/matlab_and_octave/legacy/graphical/mkl_pseudo_dna.m
| | A	examples/matlab_and_octave/legacy/graphical/spec_interp.m
| | A	examples/matlab_and_octave/legacy/graphical/svm_classification.m
| | A	examples/matlab_and_octave/legacy/graphical/svm_multiclass.m
| | A	examples/matlab_and_octave/legacy/graphical/svr_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/test_gnpp_svm.m
| | A	examples/matlab_and_octave/legacy/graphical/test_poim_wds.m
| | A	examples/matlab_and_octave/legacy/graphical/test_regression.m
| | A	examples/matlab_and_octave/legacy/graphical/test_regression_mkl.m
| | A	examples/matlab_and_octave/legacy/graphical/test_spec_interp.m
| | A	examples/matlab_and_octave/legacy/graphical/test_svm_multiclass.m
| | A	examples/matlab_and_octave/legacy/graphical/test_wd_wds_parallel.m
| | A	examples/matlab_and_octave/legacy/graphical/wds_consensus.m
| | A	examples/matlab_and_octave/legacy/graphical/wds_shift_interp.m
| | A	examples/matlab_and_octave/legacy/liblinear.m
| | A	examples/matlab_and_octave/legacy/lik_kernel.m
| | A	examples/matlab_and_octave/legacy/lpboost.m
| | A	examples/matlab_and_octave/legacy/lpm.m
| | A	examples/matlab_and_octave/legacy/markov_chain.m
| | A	examples/matlab_and_octave/legacy/mkl_classify_christmas_star.m
| | A	examples/matlab_and_octave/legacy/mkl_regression_3sine_waves.m
| | A	examples/matlab_and_octave/legacy/mkl_regression_sine.m
| | A	examples/matlab_and_octave/legacy/spec_kernel.m
| | A	examples/matlab_and_octave/legacy/string_features.m
| | A	examples/matlab_and_octave/legacy/stringfeatures.m
| | A	examples/matlab_and_octave/legacy/svmocas.m
| | A	examples/matlab_and_octave/legacy/svmsgd.m
| | A	examples/matlab_and_octave/legacy/tests/test_classifier.m
| | A	examples/matlab_and_octave/legacy/tests/test_combined.m
| | A	examples/matlab_and_octave/legacy/tests/test_combined2.m
| | A	examples/matlab_and_octave/legacy/tests/test_complex_scenario.m
| | A	examples/matlab_and_octave/legacy/tests/test_custom_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_interface.m
| | A	examples/matlab_and_octave/legacy/tests/test_kernel_optimization.m
| | A	examples/matlab_and_octave/legacy/tests/test_knn.m
| | A	examples/matlab_and_octave/legacy/tests/test_l2svm.m
| | A	examples/matlab_and_octave/legacy/tests/test_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_linear_methods.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl_svr.m
| | A	examples/matlab_and_octave/legacy/tests/test_mkl_svr_wrapper.m
| | A	examples/matlab_and_octave/legacy/tests/test_ocas_normalization.m
| | A	examples/matlab_and_octave/legacy/tests/test_one_class_svm.m
| | A	examples/matlab_and_octave/legacy/tests/test_regression_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_sliding_window.m
| | A	examples/matlab_and_octave/legacy/tests/test_sparse.m
| | A	examples/matlab_and_octave/legacy/tests/test_sparse_methods.m
| | A	examples/matlab_and_octave/legacy/tests/test_spec_consensus.m
| | A	examples/matlab_and_octave/legacy/tests/test_subgradsvm.m
| | A	examples/matlab_and_octave/legacy/tests/test_svmlight_libsvm.m
| | A	examples/matlab_and_octave/legacy/tests/test_svrlight_libsvr.m
| | A	examples/matlab_and_octave/legacy/tests/test_wd_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_wd_linadd.m
| | A	examples/matlab_and_octave/legacy/tests/test_wdocas.m
| | A	examples/matlab_and_octave/legacy/tests/test_wds_consensus.m
| | A	examples/matlab_and_octave/legacy/tests/test_wds_kernel.m
| | A	examples/matlab_and_octave/legacy/tests/test_wdshift_position_weights.m
| | A	examples/matlab_and_octave/legacy/tests/test_weighted_spectrum.m
| | A	examples/matlab_and_octave/legacy/wd_kernel.m
| | A	examples/matlab_and_octave/legacy/wds_kernel.m
| | A	examples/matlab_and_octave/legacy/weighted_spec.m
| | A	examples/matlab_and_octave/liblinear.m
| | A	examples/matlab_and_octave/lik_kernel.m
| | A	examples/matlab_and_octave/lpboost.m
| | A	examples/matlab_and_octave/lpm.m
| | A	examples/matlab_and_octave/markov_chain.m
| | A	examples/matlab_and_octave/mkl_classify_christmas_star.m
| | A	examples/matlab_and_octave/mkl_regression_3sine_waves.m
| | A	examples/matlab_and_octave/mkl_regression_sine.m
| | A	examples/matlab_and_octave/spec_kernel.m
| | A	examples/matlab_and_octave/string_features.m
| | A	examples/matlab_and_octave/svmocas.m
| | A	examples/matlab_and_octave/svmsgd.m
| | A	examples/matlab_and_octave/tests/test_classifier.m
| | A	examples/matlab_and_octave/tests/test_combined.m
| | A	examples/matlab_and_octave/tests/test_combined2.m
| | A	examples/matlab_and_octave/tests/test_complex_scenario.m
| | A	examples/matlab_and_octave/tests/test_custom_kernel.m
| | A	examples/matlab_and_octave/tests/test_interface.m
| | A	examples/matlab_and_octave/tests/test_kernel_optimization.m
| | A	examples/matlab_and_octave/tests/test_knn.m
| | A	examples/matlab_and_octave/tests/test_l2svm.m
| | A	examples/matlab_and_octave/tests/test_linadd.m
| | A	examples/matlab_and_octave/tests/test_linear_methods.m
| | A	examples/matlab_and_octave/tests/test_mkl.m
| | A	examples/matlab_and_octave/tests/test_mkl_svr.m
| | A	examples/matlab_and_octave/tests/test_mkl_svr_wrapper.m
| | A	examples/matlab_and_octave/tests/test_ocas_normalization.m
| | A	examples/matlab_and_octave/tests/test_one_class_svm.m
| | A	examples/matlab_and_octave/tests/test_regression_linadd.m
| | A	examples/matlab_and_octave/tests/test_sliding_window.m
| | A	examples/matlab_and_octave/tests/test_sparse.m
| | A	examples/matlab_and_octave/tests/test_sparse_methods.m
| | A	examples/matlab_and_octave/tests/test_spec_consensus.m
| | A	examples/matlab_and_octave/tests/test_subgradsvm.m
| | A	examples/matlab_and_octave/tests/test_svmlight_libsvm.m
| | A	examples/matlab_and_octave/tests/test_svrlight_libsvr.m
| | A	examples/matlab_and_octave/tests/test_wd_kernel.m
| | A	examples/matlab_and_octave/tests/test_wd_linadd.m
| | A	examples/matlab_and_octave/tests/test_wdocas.m
| | A	examples/matlab_and_octave/tests/test_wds_consensus.m
| | A	examples/matlab_and_octave/tests/test_wds_kernel.m
| | A	examples/matlab_and_octave/tests/test_wdshift_position_weights.m
| | A	examples/matlab_and_octave/tests/test_weighted_spectrum.m
| | A	examples/matlab_and_octave/tools/PCACut.m
| | A	examples/matlab_and_octave/tools/README
| | A	examples/matlab_and_octave/tools/calcroc.m
| | A	examples/matlab_and_octave/tools/calcrocscore.m
| | A	examples/matlab_and_octave/tools/graph_hmm.m
| | A	examples/matlab_and_octave/tools/graph_hmm2.m
| | A	examples/matlab_and_octave/tools/model_to_graph.m
| | A	examples/matlab_and_octave/tools/plotroc.m
| | A	examples/matlab_and_octave/tools/read_feature_matrix.m
| | A	examples/matlab_and_octave/tools/readroc.m
| | A	examples/matlab_and_octave/tools/save_as_ascii.m
| | A	examples/matlab_and_octave/tools/save_as_double.m
| | A	examples/matlab_and_octave/wd_kernel.m
| | A	examples/matlab_and_octave/wds_kernel.m
| | A	examples/matlab_and_octave/weighted_spec.m
| | A	examples/octave
| | A	examples/octave-modular/all_classifier.m
| | A	examples/octave-modular/all_clustering.m
| | A	examples/octave-modular/all_distance.m
| | A	examples/octave-modular/all_distribution.m
| | A	examples/octave-modular/all_kernels.m
| | A	examples/octave-modular/all_preproc.m
| | A	examples/octave-modular/all_regression.m
| | A	examples/octave-modular/check.sh
| | A	examples/octave-modular/libsvm.m
| | A	examples/python-modular/all_classifier.py
| | A	examples/python-modular/all_clustering.py
| | A	examples/python-modular/all_distance.py
| | A	examples/python-modular/all_distribution.py
| | A	examples/python-modular/all_kernels.py
| | A	examples/python-modular/all_preproc.py
| | A	examples/python-modular/all_regression.py
| | A	examples/python-modular/check.sh
| | A	examples/python-modular/check_commwordkernel_memleak.py
| | A	examples/python-modular/graphical/all_evaluation.py
| | A	examples/python-modular/graphical/krr.py
| | A	examples/python-modular/graphical/krr_sinc.py
| | A	examples/python-modular/graphical/lda.py
| | A	examples/python-modular/graphical/multiple_smvs.py
| | A	examples/python-modular/graphical/svm.py
| | A	examples/python-modular/graphical/svmlin.py
| | A	examples/python-modular/graphical/svr_sinc.py
| | A	examples/python-modular/graphical/util.py
| | A	examples/python-modular/numpy_commands.py
| | A	examples/python-modular/read_svmlight_format.py
| | A	examples/python-modular/stringfeatures.py
| | A	examples/python/all_classifier.py
| | A	examples/python/all_clustering.py
| | A	examples/python/all_distance.py
| | A	examples/python/all_distribution.py
| | A	examples/python/all_kernels.py
| | A	examples/python/all_preproc.py
| | A	examples/python/all_regression.py
| | A	examples/python/check.sh
| | A	examples/python/graphical/svm_classificaton.py
| | A	examples/python/graphical/svr_regression.py
| | A	examples/python/test_mkl.py
| | A	examples/r-modular/all_classifier.R
| | A	examples/r-modular/all_clustering.R
| | A	examples/r-modular/all_distance.R
| | A	examples/r-modular/all_distribution.R
| | A	examples/r-modular/all_kernels.R
| | A	examples/r-modular/all_preproc.R
| | A	examples/r-modular/all_regression.R
| | A	examples/r-modular/check.sh
| | A	examples/r-modular/first_shot.R
| | A	examples/r-modular/libsvm.R
| | A	examples/r/all_classifier.R
| | A	examples/r/all_clustering.R
| | A	examples/r/all_distance.R
| | A	examples/r/all_distribution.R
| | A	examples/r/all_kernels.R
| | A	examples/r/all_preproc.R
| | A	examples/r/all_regression.R
| | A	examples/r/check.sh
| | A	examples/r/graphical/hmm.R
| | A	examples/r/graphical/svm_classification.R
| | A	examples/r/graphical/svr_regression.R
| | D	matlab
| | D	matlab_and_octave/check_examples.sh
| | D	matlab_and_octave/examples/all_classifier.m
| | D	matlab_and_octave/examples/all_clustering.m
| | D	matlab_and_octave/examples/all_distance.m
| | D	matlab_and_octave/examples/all_distribution.m
| | D	matlab_and_octave/examples/all_kernels.m
| | D	matlab_and_octave/examples/all_preproc.m
| | D	matlab_and_octave/examples/all_regression.m
| | D	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| | D	matlab_and_octave/examples/graphical/cluster_kmeans.m
| | D	matlab_and_octave/examples/graphical/entropy.m
| | D	matlab_and_octave/examples/graphical/hmm.m
| | D	matlab_and_octave/examples/graphical/lda_classification.m
| | D	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| | D	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| | D	matlab_and_octave/examples/graphical/spec_interp.m
| | D	matlab_and_octave/examples/graphical/svm_classification.m
| | D	matlab_and_octave/examples/graphical/svm_multiclass.m
| | D	matlab_and_octave/examples/graphical/svr_regression.m
| | D	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| | D	matlab_and_octave/examples/graphical/test_poim_wds.m
| | D	matlab_and_octave/examples/graphical/test_regression.m
| | D	matlab_and_octave/examples/graphical/test_regression_mkl.m
| | D	matlab_and_octave/examples/graphical/test_spec_interp.m
| | D	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| | D	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| | D	matlab_and_octave/examples/graphical/wds_consensus.m
| | D	matlab_and_octave/examples/graphical/wds_shift_interp.m
| | D	matlab_and_octave/examples/legacy/all_classifier.m
| | D	matlab_and_octave/examples/legacy/all_clustering.m
| | D	matlab_and_octave/examples/legacy/all_distance.m
| | D	matlab_and_octave/examples/legacy/all_distribution.m
| | D	matlab_and_octave/examples/legacy/all_kernels.m
| | D	matlab_and_octave/examples/legacy/all_preproc.m
| | D	matlab_and_octave/examples/legacy/all_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/cluster_hierarchical.m
| | D	matlab_and_octave/examples/legacy/graphical/cluster_kmeans.m
| | D	matlab_and_octave/examples/legacy/graphical/entropy.m
| | D	matlab_and_octave/examples/legacy/graphical/hmm.m
| | D	matlab_and_octave/examples/legacy/graphical/lda_classification.m
| | D	matlab_and_octave/examples/legacy/graphical/local_alignment_kernel.m
| | D	matlab_and_octave/examples/legacy/graphical/mkl_pseudo_dna.m
| | D	matlab_and_octave/examples/legacy/graphical/spec_interp.m
| | D	matlab_and_octave/examples/legacy/graphical/svm_classification.m
| | D	matlab_and_octave/examples/legacy/graphical/svm_multiclass.m
| | D	matlab_and_octave/examples/legacy/graphical/svr_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/test_gnpp_svm.m
| | D	matlab_and_octave/examples/legacy/graphical/test_poim_wds.m
| | D	matlab_and_octave/examples/legacy/graphical/test_regression.m
| | D	matlab_and_octave/examples/legacy/graphical/test_regression_mkl.m
| | D	matlab_and_octave/examples/legacy/graphical/test_spec_interp.m
| | D	matlab_and_octave/examples/legacy/graphical/test_svm_multiclass.m
| | D	matlab_and_octave/examples/legacy/graphical/test_wd_wds_parallel.m
| | D	matlab_and_octave/examples/legacy/graphical/wds_consensus.m
| | D	matlab_and_octave/examples/legacy/graphical/wds_shift_interp.m
| | D	matlab_and_octave/examples/legacy/liblinear.m
| | D	matlab_and_octave/examples/legacy/lik_kernel.m
| | D	matlab_and_octave/examples/legacy/lpboost.m
| | D	matlab_and_octave/examples/legacy/lpm.m
| | D	matlab_and_octave/examples/legacy/markov_chain.m
| | D	matlab_and_octave/examples/legacy/mkl_classify_christmas_star.m
| | D	matlab_and_octave/examples/legacy/mkl_regression_3sine_waves.m
| | D	matlab_and_octave/examples/legacy/mkl_regression_sine.m
| | D	matlab_and_octave/examples/legacy/spec_kernel.m
| | D	matlab_and_octave/examples/legacy/string_features.m
| | D	matlab_and_octave/examples/legacy/stringfeatures.m
| | D	matlab_and_octave/examples/legacy/svmocas.m
| | D	matlab_and_octave/examples/legacy/svmsgd.m
| | D	matlab_and_octave/examples/legacy/tests/test_classifier.m
| | D	matlab_and_octave/examples/legacy/tests/test_combined.m
| | D	matlab_and_octave/examples/legacy/tests/test_combined2.m
| | D	matlab_and_octave/examples/legacy/tests/test_complex_scenario.m
| | D	matlab_and_octave/examples/legacy/tests/test_custom_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_interface.m
| | D	matlab_and_octave/examples/legacy/tests/test_kernel_optimization.m
| | D	matlab_and_octave/examples/legacy/tests/test_knn.m
| | D	matlab_and_octave/examples/legacy/tests/test_l2svm.m
| | D	matlab_and_octave/examples/legacy/tests/test_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_linear_methods.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl_svr.m
| | D	matlab_and_octave/examples/legacy/tests/test_mkl_svr_wrapper.m
| | D	matlab_and_octave/examples/legacy/tests/test_ocas_normalization.m
| | D	matlab_and_octave/examples/legacy/tests/test_one_class_svm.m
| | D	matlab_and_octave/examples/legacy/tests/test_regression_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_sliding_window.m
| | D	matlab_and_octave/examples/legacy/tests/test_sparse.m
| | D	matlab_and_octave/examples/legacy/tests/test_sparse_methods.m
| | D	matlab_and_octave/examples/legacy/tests/test_spec_consensus.m
| | D	matlab_and_octave/examples/legacy/tests/test_subgradsvm.m
| | D	matlab_and_octave/examples/legacy/tests/test_svmlight_libsvm.m
| | D	matlab_and_octave/examples/legacy/tests/test_svrlight_libsvr.m
| | D	matlab_and_octave/examples/legacy/tests/test_wd_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_wd_linadd.m
| | D	matlab_and_octave/examples/legacy/tests/test_wdocas.m
| | D	matlab_and_octave/examples/legacy/tests/test_wds_consensus.m
| | D	matlab_and_octave/examples/legacy/tests/test_wds_kernel.m
| | D	matlab_and_octave/examples/legacy/tests/test_wdshift_position_weights.m
| | D	matlab_and_octave/examples/legacy/tests/test_weighted_spectrum.m
| | D	matlab_and_octave/examples/legacy/wd_kernel.m
| | D	matlab_and_octave/examples/legacy/wds_kernel.m
| | D	matlab_and_octave/examples/legacy/weighted_spec.m
| | D	matlab_and_octave/examples/liblinear.m
| | D	matlab_and_octave/examples/lik_kernel.m
| | D	matlab_and_octave/examples/lpboost.m
| | D	matlab_and_octave/examples/lpm.m
| | D	matlab_and_octave/examples/markov_chain.m
| | D	matlab_and_octave/examples/mkl_classify_christmas_star.m
| | D	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| | D	matlab_and_octave/examples/mkl_regression_sine.m
| | D	matlab_and_octave/examples/spec_kernel.m
| | D	matlab_and_octave/examples/string_features.m
| | D	matlab_and_octave/examples/svmocas.m
| | D	matlab_and_octave/examples/svmsgd.m
| | D	matlab_and_octave/examples/tests/test_classifier.m
| | D	matlab_and_octave/examples/tests/test_combined.m
| | D	matlab_and_octave/examples/tests/test_combined2.m
| | D	matlab_and_octave/examples/tests/test_complex_scenario.m
| | D	matlab_and_octave/examples/tests/test_custom_kernel.m
| | D	matlab_and_octave/examples/tests/test_interface.m
| | D	matlab_and_octave/examples/tests/test_kernel_optimization.m
| | D	matlab_and_octave/examples/tests/test_knn.m
| | D	matlab_and_octave/examples/tests/test_l2svm.m
| | D	matlab_and_octave/examples/tests/test_linadd.m
| | D	matlab_and_octave/examples/tests/test_linear_methods.m
| | D	matlab_and_octave/examples/tests/test_mkl.m
| | D	matlab_and_octave/examples/tests/test_mkl_svr.m
| | D	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| | D	matlab_and_octave/examples/tests/test_ocas_normalization.m
| | D	matlab_and_octave/examples/tests/test_one_class_svm.m
| | D	matlab_and_octave/examples/tests/test_regression_linadd.m
| | D	matlab_and_octave/examples/tests/test_sliding_window.m
| | D	matlab_and_octave/examples/tests/test_sparse.m
| | D	matlab_and_octave/examples/tests/test_sparse_methods.m
| | D	matlab_and_octave/examples/tests/test_spec_consensus.m
| | D	matlab_and_octave/examples/tests/test_subgradsvm.m
| | D	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| | D	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| | D	matlab_and_octave/examples/tests/test_wd_kernel.m
| | D	matlab_and_octave/examples/tests/test_wd_linadd.m
| | D	matlab_and_octave/examples/tests/test_wdocas.m
| | D	matlab_and_octave/examples/tests/test_wds_consensus.m
| | D	matlab_and_octave/examples/tests/test_wds_kernel.m
| | D	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| | D	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| | D	matlab_and_octave/examples/tools/PCACut.m
| | D	matlab_and_octave/examples/tools/README
| | D	matlab_and_octave/examples/tools/calcroc.m
| | D	matlab_and_octave/examples/tools/calcrocscore.m
| | D	matlab_and_octave/examples/tools/graph_hmm.m
| | D	matlab_and_octave/examples/tools/graph_hmm2.m
| | D	matlab_and_octave/examples/tools/model_to_graph.m
| | D	matlab_and_octave/examples/tools/plotroc.m
| | D	matlab_and_octave/examples/tools/read_feature_matrix.m
| | D	matlab_and_octave/examples/tools/readroc.m
| | D	matlab_and_octave/examples/tools/save_as_ascii.m
| | D	matlab_and_octave/examples/tools/save_as_double.m
| | D	matlab_and_octave/examples/wd_kernel.m
| | D	matlab_and_octave/examples/wds_kernel.m
| | D	matlab_and_octave/examples/weighted_spec.m
| | D	matlab_and_octave/testcases/WeightedDegreeString.m
| | D	matlab_and_octave/testcases/run_matlab.sh
| | D	matlab_and_octave/testcases/run_octave.sh
| | D	matlab_and_octave/testcases/test_chi2_kernel.m
| | D	matlab_and_octave/testcases/test_cws_kernel.m
| | D	matlab_and_octave/testcases/test_gaussian_kernel.m
| | D	matlab_and_octave/testcases/test_kernels.m
| | D	matlab_and_octave/testcases/test_linear_kernel.m
| | D	matlab_and_octave/testcases/test_matlab.m
| | D	matlab_and_octave/testcases/test_octave.m
| | D	matlab_and_octave/testcases/test_poly_kernel.m
| | D	matlab_and_octave/testcases/test_sigmoid_kernel.m
| | D	matlab_and_octave/testcases/test_svm.m
| | D	matlab_and_octave/testcases/test_wdchar_kernel.m
| | D	matlab_and_octave/testcases/test_wds_kernel.m
| | D	octave
| | D	octave-modular/check_examples.sh
| | D	octave-modular/examples/all_classifier.m
| | D	octave-modular/examples/all_clustering.m
| | D	octave-modular/examples/all_distance.m
| | D	octave-modular/examples/all_distribution.m
| | D	octave-modular/examples/all_kernels.m
| | D	octave-modular/examples/all_preproc.m
| | D	octave-modular/examples/all_regression.m
| | D	octave-modular/examples/libsvm.m
| | D	python-modular/check_examples.sh
| | D	python-modular/examples/all_classifier.py
| | D	python-modular/examples/all_clustering.py
| | D	python-modular/examples/all_distance.py
| | D	python-modular/examples/all_distribution.py
| | D	python-modular/examples/all_kernels.py
| | D	python-modular/examples/all_preproc.py
| | D	python-modular/examples/all_regression.py
| | D	python-modular/examples/check_commwordkernel_memleak.py
| | D	python-modular/examples/graphical/all_evaluation.py
| | D	python-modular/examples/graphical/krr.py
| | D	python-modular/examples/graphical/krr_sinc.py
| | D	python-modular/examples/graphical/lda.py
| | D	python-modular/examples/graphical/multiple_smvs.py
| | D	python-modular/examples/graphical/svm.py
| | D	python-modular/examples/graphical/svmlin.py
| | D	python-modular/examples/graphical/svr_sinc.py
| | D	python-modular/examples/graphical/util.py
| | D	python-modular/examples/numpy_commands.py
| | D	python-modular/examples/read_svmlight_format.py
| | D	python-modular/examples/stringfeatures.py
| | D	python-modular/testcases/classifier.py
| | D	python-modular/testcases/clustering.py
| | D	python-modular/testcases/distance.py
| | D	python-modular/testcases/distribution.py
| | D	python-modular/testcases/kernel.py
| | D	python-modular/testcases/preproc.py
| | D	python-modular/testcases/regression.py
| | D	python-modular/testcases/test_all.sh
| | D	python-modular/testcases/test_one.py
| | D	python-modular/testcases/util.py
| | D	python/check_examples.sh
| | D	python/examples/all_classifier.py
| | D	python/examples/all_clustering.py
| | D	python/examples/all_distance.py
| | D	python/examples/all_distribution.py
| | D	python/examples/all_kernels.py
| | D	python/examples/all_preproc.py
| | D	python/examples/all_regression.py
| | D	python/examples/graphical/svm_classificaton.py
| | D	python/examples/graphical/svr_regression.py
| | D	python/examples/test_mkl.py
| | D	python/testcases/m_print.py
| | D	python/testcases/read_mfile.py
| | D	python/testcases/run.sh
| | D	python/testcases/test.py
| | D	python/testcases/test_kernels.py
| | D	python/testcases/test_python
| | D	r-modular/check_examples.sh
| | D	r-modular/examples/all_classifier.R
| | D	r-modular/examples/all_clustering.R
| | D	r-modular/examples/all_distance.R
| | D	r-modular/examples/all_distribution.R
| | D	r-modular/examples/all_kernels.R
| | D	r-modular/examples/all_preproc.R
| | D	r-modular/examples/all_regression.R
| | D	r-modular/examples/first_shot.R
| | D	r-modular/examples/libsvm.R
| | D	r/check_examples.sh
| | M	src/Makefile
| | A	testsuite/matlab
| | A	testsuite/matlab_and_octave/WeightedDegreeString.m
| | A	testsuite/matlab_and_octave/run_matlab.sh
| | A	testsuite/matlab_and_octave/run_octave.sh
| | A	testsuite/matlab_and_octave/test_chi2_kernel.m
| | A	testsuite/matlab_and_octave/test_cws_kernel.m
| | A	testsuite/matlab_and_octave/test_gaussian_kernel.m
| | A	testsuite/matlab_and_octave/test_kernels.m
| | A	testsuite/matlab_and_octave/test_linear_kernel.m
| | A	testsuite/matlab_and_octave/test_matlab.m
| | A	testsuite/matlab_and_octave/test_octave.m
| | A	testsuite/matlab_and_octave/test_poly_kernel.m
| | A	testsuite/matlab_and_octave/test_sigmoid_kernel.m
| | A	testsuite/matlab_and_octave/test_svm.m
| | A	testsuite/matlab_and_octave/test_wdchar_kernel.m
| | A	testsuite/matlab_and_octave/test_wds_kernel.m
| | A	testsuite/octave
| | A	testsuite/python-modular/classifier.py
| | A	testsuite/python-modular/clustering.py
| | A	testsuite/python-modular/distance.py
| | A	testsuite/python-modular/distribution.py
| | A	testsuite/python-modular/kernel.py
| | A	testsuite/python-modular/preproc.py
| | A	testsuite/python-modular/regression.py
| | A	testsuite/python-modular/test_all.sh
| | A	testsuite/python-modular/test_one.py
| | A	testsuite/python-modular/util.py
| | A	testsuite/python/m_print.py
| | A	testsuite/python/read_mfile.py
| | A	testsuite/python/run.sh
| | A	testsuite/python/test.py
| | A	testsuite/python/test_kernels.py
| | A	testsuite/python/test_python
| | A	testsuite/r/read_mfile.R
| | A	testsuite/r/run.sh
| | A	testsuite/r/test_R.R
| | A	testsuite/r/test_kernels.R
| |   
* | commit 5c0b49b1d5f10dbee6b0674b97d627599baf07c6
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 19:53:04 2008 +0000
| | 
| |     interface:
| |     - Compile fix for cmdline.
| | 
| | M	src/interface/CmdLineInterface.h
| |   
* | commit 02558be938c09be56146677f8f8e39749f07f45c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 28 19:20:13 2008 +0000
| | 
| |     revert accidental change - r-modular is crashy when we do proper garbage collection so better leak memory for now
| | 
| | M	src/base/SGObject.h
| |   
* | commit 291e0872aca728405c4378908584e815c51a5575
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 28 19:14:48 2008 +0000
| | 
| |     don't show progress by default
| | 
| | M	src/base/SGObject.h
| | M	src/lib/io.cpp
| |   
* | commit 8b4d8b1246249a5882277838e5f75243a8d84837
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 28 00:04:02 2008 +0000
| | 
| |     - All derived classes should now call their parent classes on construction.
| | 
| | M	src/classifier/KNN.cpp
| | M	src/classifier/KernelPerceptron.cpp
| | M	src/classifier/LDA.cpp
| | M	src/classifier/LPBoost.cpp
| | M	src/classifier/LPM.cpp
| | M	src/classifier/LinearClassifier.cpp
| | M	src/classifier/Perceptron.cpp
| | M	src/classifier/PluginEstimate.cpp
| | M	src/classifier/SparseLinearClassifier.cpp
| | M	src/classifier/SubGradientLPM.cpp
| | M	src/classifier/svm/CPLEXSVM.cpp
| | M	src/classifier/svm/CPLEXSVM.h
| | M	src/classifier/svm/GMNPSVM.cpp
| | M	src/classifier/svm/GNPPSVM.cpp
| | M	src/classifier/svm/GPBTSVM.cpp
| | M	src/classifier/svm/LibLinear.cpp
| | M	src/classifier/svm/LibSVM.cpp
| | M	src/classifier/svm/LibSVMMultiClass.cpp
| | M	src/classifier/svm/MPDSVM.cpp
| | M	src/classifier/svm/MultiClassSVM.cpp
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVMLin.cpp
| | M	src/classifier/svm/SVMOcas.cpp
| | M	src/classifier/svm/SVMSGD.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/classifier/svm/SVM_light.h
| | M	src/classifier/svm/SVM_linear.cpp
| | M	src/classifier/svm/SubGradientSVM.cpp
| | M	src/classifier/svm/Tron.cpp
| | M	src/classifier/svm/WDSVMOcas.cpp
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| | M	src/classifier/svm/gpdt.cpp
| | M	src/classifier/svm/qpbsvmlib.cpp
| | M	src/clustering/Hierarchical.cpp
| | M	src/clustering/KMeans.cpp
| | M	src/distance/CanberraWordDistance.cpp
| | M	src/distance/Distance.cpp
| | M	src/distance/DistanceMachine.cpp
| | M	src/distance/HammingWordDistance.cpp
| | M	src/distance/MinkowskiMetric.cpp
| | M	src/distributions/Distribution.cpp
| | M	src/distributions/histogram/Histogram.cpp
| | M	src/distributions/hmm/GHMM.cpp
| | M	src/distributions/hmm/LinearHMM.cpp
| | M	src/features/Alphabet.cpp
| | M	src/features/ByteFeatures.cpp
| | M	src/features/ByteFeatures.h
| | M	src/features/CharFeatures.cpp
| | M	src/features/CharFeatures.h
| | M	src/features/CombinedFeatures.cpp
| | M	src/features/FKFeatures.cpp
| | M	src/features/Features.cpp
| | M	src/features/Labels.cpp
| | M	src/features/MindyGramFeatures.h
| | M	src/features/RealFeatures.h
| | M	src/features/ShortFeatures.cpp
| | M	src/features/ShortFeatures.h
| | M	src/features/SimpleFeatures.h
| | M	src/features/SparseFeatures.h
| | M	src/features/StringFeatures.h
| | M	src/features/TOPFeatures.cpp
| | M	src/features/TOPFeatures.h
| | M	src/features/WordFeatures.cpp
| | M	src/features/WordFeatures.h
| | M	src/guilib/GUIClassifier.cpp
| | M	src/guilib/GUIDistance.cpp
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIMath.cpp
| | M	src/guilib/GUIPreProc.cpp
| | M	src/guilib/GUITime.cpp
| | M	src/interface/OctaveInterface.h
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/PythonInterface.h
| | M	src/interface/RInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/kernel/AUCKernel.cpp
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.h
| | M	src/kernel/ConstKernel.cpp
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/DiagKernel.cpp
| | M	src/kernel/DistanceKernel.cpp
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/KernelMachine.cpp
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearKernel.cpp
| | M	src/kernel/LinearStringKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PolyMatchWordKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseLinearKernel.cpp
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/WeightedCommWordStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/lib/Array.h
| | M	src/lib/Array2.h
| | M	src/lib/Array3.h
| | M	src/lib/Cache.h
| | M	src/lib/Cplex.cpp
| | M	src/lib/DynamicArray.h
| | M	src/lib/File.cpp
| | M	src/lib/Mathematics.cpp
| | M	src/lib/Signal.cpp
| | M	src/lib/SimpleFile.h
| | M	src/lib/Time.cpp
| | M	src/lib/Trie.h
| | M	src/preproc/LogPlusOne.cpp
| | M	src/preproc/NormOne.cpp
| | M	src/preproc/PreProc.cpp
| | M	src/preproc/SortUlongString.cpp
| | M	src/preproc/SortWord.cpp
| | M	src/preproc/SortWordString.cpp
| | M	src/preproc/StringPreProc.h
| | M	src/regression/KRR.cpp
| | M	src/regression/svr/LibSVR.cpp
| | M	src/regression/svr/SVR_light.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/Plif.cpp
| | M	src/structure/PlifArray.cpp
| |   
* | commit f625879fafc2cc90f92022b3bf63f5188cc38537
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 27 15:11:30 2008 +0000
| | 
| |     fix a bug in linadd/batch computation for WD* kernels when degree=1 + minor code cleanup
| | 
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/lib/Trie.h
| |   
* | commit 593b48c1b60ee455063c223e91c3fa230eff622b
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue May 27 00:25:09 2008 +0000
| | 
| |     examples:
| |     - Handle exceptions gracefully for each interface when there is no
| |       SVM/SVRLight available.
| | 
| | M	matlab_and_octave/examples/all_classifier.m
| | M	matlab_and_octave/examples/all_regression.m
| | M	octave-modular/examples/all_classifier.m
| | M	octave-modular/examples/all_regression.m
| | M	python-modular/examples/all_classifier.py
| | M	python-modular/examples/all_regression.py
| | M	python-modular/examples/graphical/multiple_smvs.py
| | M	python-modular/examples/graphical/svmlin.py
| | M	python/examples/all_classifier.py
| | M	python/examples/all_regression.py
| | M	python/examples/test_mkl.py
| | M	r-modular/examples/all_classifier.R
| | M	r-modular/examples/all_regression.R
| | M	r/examples/all_classifier.R
| | M	r/examples/all_regression.R
| |   
* | commit 39ae93188ca8353b2062c86cb24f4c12e68cc061
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon May 26 20:38:18 2008 +0000
| | 
| |     - Removed TODO, it is now to be found in trac.
| | 
| | D	src/TODO
| |   
* | commit bde6d7cad86a4a2e59fae70c884bc7958c79cd1d
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Sun May 25 20:32:26 2008 +0000
| | 
| |     library:
| |     - Modified SG_DONE to only display a message when progress bar is enabled.
| | 
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/lib/io.cpp
| | M	src/lib/io.h
| | M	src/preproc/PCACut.cpp
| | M	src/regression/svr/SVR_light.cpp
| |   
* | commit 2e604cdab1dd81213afdb39774a0e8a21bbc32e6
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 25 17:33:24 2008 +0000
| | 
| |     fix dysfunctional lapack bug (it was only working OK with atlas or when neither atlas or lapack were available)
| | 
| | M	src/lib/lapack.cpp
| | M	src/lib/lapack.h
| | M	src/lib/python_typemaps.i
| |   
* | commit be1ffe9e44a84d47a447f9f2cc5b6ea8b1105e58
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:45:51 2008 +0000
| | 
| |     rename numpy_* -> *
| | 
| | A	python-modular/examples/graphical/krr.py
| | A	python-modular/examples/graphical/krr_sinc.py
| | A	python-modular/examples/graphical/lda.py
| | D	python-modular/examples/graphical/numpy_krr.py
| | D	python-modular/examples/graphical/numpy_krr_sinc.py
| | D	python-modular/examples/graphical/numpy_lda.py
| | D	python-modular/examples/graphical/numpy_svm.py
| | D	python-modular/examples/graphical/numpy_svmlin.py
| | D	python-modular/examples/graphical/numpy_svr_sinc.py
| | A	python-modular/examples/graphical/svm.py
| | A	python-modular/examples/graphical/svmlin.py
| | A	python-modular/examples/graphical/svr_sinc.py
| |   
* | commit 949223dbe15fc7efc9cdf808b48cd1631ce2dee3
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:27:32 2008 +0000
| | 
| |     update TODO
| | 
| | M	src/TODO
| |   
* | commit d3a1ac1b349a5c954f9c99e2ed93e3eb8713acad
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 24 06:19:55 2008 +0000
| | 
| |     allow cachesize == 2 as lower limit
| | 
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| |   
* | commit 636566ebc14fe9ed77171ec9f10e8e6abd2c862e
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:57:47 2008 +0000
| | 
| |     library:
| |     - Introduced SG_DONE.
| | 
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/distance/Distance.cpp
| | M	src/distributions/hmm/HMM.cpp
| | M	src/features/FKFeatures.cpp
| | M	src/features/RealFileFeatures.cpp
| | M	src/features/TOPFeatures.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/lib/io.h
| | M	src/preproc/PCACut.cpp
| | M	src/regression/svr/SVR_light.cpp
| |   
* | commit 13551bd8d9c1cd1433e330cb5d46d134bd3b0b7c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:34:12 2008 +0000
| | 
| |     library:
| |     - Fixed issue of not terminating when loglevel is set high enough.
| |     - Improved efficiency of message printing.
| | 
| | M	src/TODO
| | M	src/lib/io.cpp
| | M	src/lib/io.h
| |   
* | commit d7d2167a605cabce3babefd0ab27dbeed3a6bc63
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 20:32:52 2008 +0000
| | 
| |     interface:
| |     - Extended static interface to support loglevels NOTICE, CRITICAL, ALERT and
| |       EMERGENCY. It is arguable if the last 3 are feasible, because Shogun is
| |       currently terminated if these situations occur.
| | 
| | M	src/interface/SGInterface.cpp
| |   
* | commit 3b5136cb8c48d0bf90f0e7ed22d99a827282703d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 08:37:04 2008 +0000
| | 
| |     compile fix when lapack is not available
| | 
| | M	src/guilib/GUIPreProc.cpp
| |   
* | commit c0cdf593ce93ff2314f0ab2ee9a2e036f75a1f8a
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 06:58:50 2008 +0000
| | 
| |      updated TODO
| | 
| | M	src/TODO
| |   
* | commit 3a4a3793d60dc0991f57f44cfb51b5147f925520
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 23 06:36:44 2008 +0000
| | 
| |     compile fix when LAPACK/ATLAS is not available
| | 
| | M	src/guilib/GUIClassifier.cpp
| |   
* | commit 8e0157f8baf777e670053072e75fc111acc28030
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Fri May 23 02:09:30 2008 +0000
| | 
| |     - Introduced new section ALMOST DONE.
| | 
| | M	src/TODO
| |   
* | commit d21686d0f21010eeea9b5c02c9241359d4c2ea27
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 22 20:49:30 2008 +0000
| | 
| |     interface:
| |     - More cleanup for guilib:
| |       + Made CGUIHMM::append_model available for SGInterface (to be used by
| |       CmdLineInterface)
| |       + Removed 'commands' N_COMMENT1 and N_COMMENT2, moving the defines into
| |       CmdLineInterface.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIHMM.h
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/CmdLineInterface.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| |   
* | commit ee4a560001d616b1cfdf05f41a6045104c2e5f43
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Thu May 22 19:13:44 2008 +0000
| | 
| |     interface:
| |     - Cleaned up some stuff in guilib, notably:
| |       + Removed KNN-specific stuff.
| |       + Removed command N_ALPHABET, N_SET_MAX_DIM.
| |       + Removed CGUIDistance::clean_distance.
| |       + Added commands baum_welch_viterbi_train_defined, del_last_kernel,
| |       del_last_features.
| |       + Moved implementation of entropy and relative_entropy into CGUIHMM.
| |     
| |     library:
| |     - Saved a function call in overloaded operator delete.
| | 
| | M	src/guilib/GUICommands.h
| | M	src/guilib/GUIDistance.cpp
| | M	src/guilib/GUIDistance.h
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIFeatures.h
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIHMM.h
| | D	src/guilib/GUIKNN.cpp
| | D	src/guilib/GUIKNN.h
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIKernel.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/lib/memory.cpp
| |   
* | commit 645b32a220dfcc8d84193cd2c9bf8eaad567d5be
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 05:57:45 2008 +0000
| | 
| |     updated todo
| | 
| | M	src/TODO
| |   
* | commit 9b9cab6de800a101560dfeac4ff49606b88a7749
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 05:01:42 2008 +0000
| | 
| |     updated TODO
| | 
| | M	src/TODO
| |   
* | commit 1ca535f531a8a75412fc667dca66b9a50c1f6d07
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Thu May 22 04:48:52 2008 +0000
| | 
| |     we no catch out of memory errors, so move remove from TODO and add to NEWS :)
| | 
| | M	src/NEWS
| | M	src/TODO
| |   
* | commit a279cb5cb72c025b4430d570c325a013dafc7c06
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 21 20:23:44 2008 +0000
| | 
| |     memory handling:
| |     - bad_alloc is now caught for modular interfaces.
| |     - Cosmetic fixes in overloaded new.
| | 
| | M	src/lib/ShogunException.i
| | M	src/lib/memory.cpp
| |   
* | commit 8233cacc7581e59f0bb285c5ef44db2eb4ecd095
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Wed May 21 10:34:33 2008 +0000
| | 
| |     memory handling exceptions now work for all interfaces
| | 
| | M	src/lib/memory.cpp
| | M	src/lib/memory.h
| |   
* | commit 74cf5319bcab5e94c07d859698bc8762ebe6a8c1
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Wed May 21 00:18:31 2008 +0000
| | 
| |     interface:
| |     - Improved exception handling for static interfaces.
| |     - Better info string in exception thrown by overloaded operator new.
| | 
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/RInterface.cpp
| | M	src/lib/memory.cpp
| |   
* | commit af405563fafc407b4bd77ce3432fa53dedc0aeca
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Tue May 20 23:06:47 2008 +0000
| | 
| |     - Big deletion of ASSERT where used unnecessarily in conjuntion with operator
| |       new.
| |     - Also added a couple of whitespace fixes, although this, together with
| |       coding-style fixes should be done for real some time later.
| | 
| | M	src/classifier/Classifier.cpp
| | M	src/classifier/KNN.cpp
| | M	src/classifier/LDA.cpp
| | M	src/classifier/LPBoost.cpp
| | M	src/classifier/LPM.cpp
| | M	src/classifier/LinearClassifier.cpp
| | M	src/classifier/Perceptron.cpp
| | M	src/classifier/PluginEstimate.cpp
| | M	src/classifier/PluginEstimate.h
| | M	src/classifier/SparseLinearClassifier.cpp
| | M	src/classifier/SubGradientLPM.cpp
| | M	src/classifier/svm/CPLEXSVM.cpp
| | M	src/classifier/svm/GMNPSVM.cpp
| | M	src/classifier/svm/GNPPSVM.cpp
| | M	src/classifier/svm/GPBTSVM.cpp
| | M	src/classifier/svm/LibLinear.cpp
| | M	src/classifier/svm/LibSVM.cpp
| | M	src/classifier/svm/LibSVMMultiClass.cpp
| | M	src/classifier/svm/LibSVMOneClass.cpp
| | M	src/classifier/svm/MPDSVM.h
| | M	src/classifier/svm/MultiClassSVM.cpp
| | M	src/classifier/svm/SVM.cpp
| | M	src/classifier/svm/SVMLin.cpp
| | M	src/classifier/svm/SVMOcas.cpp
| | M	src/classifier/svm/SVMSGD.cpp
| | M	src/classifier/svm/SVM_light.cpp
| | M	src/classifier/svm/SubGradientSVM.cpp
| | M	src/classifier/svm/WDSVMOcas.cpp
| | M	src/classifier/svm/WDSVMOcas.h
| | M	src/classifier/svm/gmnplib.cpp
| | M	src/classifier/svm/gnpplib.cpp
| | M	src/classifier/svm/qpbsvmlib.cpp
| | M	src/clustering/Hierarchical.cpp
| | M	src/clustering/KMeans.cpp
| | M	src/clustering/KMeans.h
| | M	src/distance/Distance.cpp
| | M	src/distance/Distance.h
| | M	src/distance/SimpleDistance.h
| | M	src/distance/SparseDistance.h
| | M	src/distance/SparseEuclidianDistance.cpp
| | M	src/distance/StringDistance.h
| | M	src/distributions/histogram/Histogram.cpp
| | M	src/distributions/hmm/HMM.cpp
| | M	src/distributions/hmm/LinearHMM.cpp
| | M	src/features/Alphabet.cpp
| | M	src/features/Alphabet.h
| | M	src/features/FKFeatures.cpp
| | M	src/features/Features.cpp
| | M	src/features/Labels.cpp
| | M	src/features/MindyGramFeatures.cpp
| | M	src/features/RealFeatures.cpp
| | M	src/features/RealFileFeatures.cpp
| | M	src/features/ShortFeatures.cpp
| | M	src/features/SimpleFeatures.h
| | M	src/features/SparseFeatures.h
| | M	src/features/StringFeatures.h
| | M	src/features/TOPFeatures.cpp
| | M	src/features/WordFeatures.cpp
| | M	src/guilib/GUIClassifier.cpp
| | M	src/guilib/GUIFeatures.cpp
| | M	src/guilib/GUIHMM.cpp
| | M	src/guilib/GUIKNN.cpp
| | M	src/guilib/GUIKernel.cpp
| | M	src/guilib/GUIPreProc.cpp
| | M	src/guilib/GUITime.cpp
| | M	src/interface/CmdLineInterface.cpp
| | M	src/interface/MatlabInterface.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/PythonInterface.cpp
| | M	src/interface/SGInterface.cpp
| | M	src/kernel/Chi2Kernel.cpp
| | M	src/kernel/CombinedKernel.cpp
| | M	src/kernel/CombinedKernel.h
| | M	src/kernel/CommUlongStringKernel.cpp
| | M	src/kernel/CommWordStringKernel.cpp
| | M	src/kernel/CustomKernel.cpp
| | M	src/kernel/CustomKernel.h
| | M	src/kernel/FixedDegreeStringKernel.cpp
| | M	src/kernel/GaussianKernel.cpp
| | M	src/kernel/GaussianShiftKernel.cpp
| | M	src/kernel/HistogramWordKernel.cpp
| | M	src/kernel/Kernel.cpp
| | M	src/kernel/Kernel.h
| | M	src/kernel/KernelMachine.cpp
| | M	src/kernel/LinearByteKernel.cpp
| | M	src/kernel/LinearWordKernel.cpp
| | M	src/kernel/LocalAlignmentStringKernel.cpp
| | M	src/kernel/LocalityImprovedStringKernel.cpp
| | M	src/kernel/MindyGramKernel.cpp
| | M	src/kernel/PolyKernel.cpp
| | M	src/kernel/PolyMatchStringKernel.cpp
| | M	src/kernel/PyramidChi2.cpp
| | M	src/kernel/SalzbergWordKernel.cpp
| | M	src/kernel/SigmoidKernel.cpp
| | M	src/kernel/SimpleKernel.h
| | M	src/kernel/SparseGaussianKernel.cpp
| | M	src/kernel/SparseKernel.h
| | M	src/kernel/SparsePolyKernel.cpp
| | M	src/kernel/StringKernel.h
| | M	src/kernel/WeightedCommWordStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.cpp
| | M	src/kernel/WeightedDegreePositionStringKernel.h
| | M	src/kernel/WeightedDegreeStringKernel.cpp
| | M	src/kernel/WordMatchKernel.cpp
| | M	src/lib/Array.h
| | M	src/lib/Cache.h
| | M	src/lib/Cplex.cpp
| | M	src/lib/File.cpp
| | M	src/lib/Mathematics.cpp
| | M	src/lib/Mathematics.h
| | M	src/lib/Trie.cpp
| | M	src/lib/lapack.cpp
| | M	src/preproc/LogPlusOne.cpp
| | M	src/preproc/NormDerivativeLem3.cpp
| | M	src/preproc/NormOne.cpp
| | M	src/preproc/PCACut.cpp
| | M	src/preproc/PruneVarSubMean.cpp
| | M	src/preproc/SortUlongString.cpp
| | M	src/preproc/SortWord.cpp
| | M	src/preproc/SortWordString.cpp
| | M	src/regression/KRR.cpp
| | M	src/regression/svr/LibSVR.cpp
| | M	src/regression/svr/SVR_light.cpp
| | M	src/structure/DynProg.cpp
| | M	src/structure/Plif.cpp
| | M	src/structure/PlifArray.cpp
| |   
* | commit 99f625c945063cac52d600eec25f1eed9a794f8d
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 10:15:23 2008 +0000
| | 
| |     rename new memory... and *sigh* use std new
| | 
| | M	src/base/SGObject.cpp
| | M	src/classifier/svm/SVM_libsvm.cpp
| | M	src/interface/OctaveInterface.cpp
| | M	src/interface/OctaveInterface.h
| | M	src/lib/common.h
| | A	src/lib/memory.cpp
| | A	src/lib/memory.h
| | D	src/lib/new.cpp
| | D	src/lib/new.h
| |   
* | commit 2adc2559c8916e43b263f9fea0e209154af22e73
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Tue May 20 06:20:57 2008 +0000
| | 
| |     custom new (seems to work here)
| | 
| | M	src/base/SGObject.cpp
| | A	src/lib/new.cpp
| | A	src/lib/new.h
| |   
* | commit 49bc5f1e23d3209786d0371d593f6afa15db0d3c
| | Author: Sebastian Henschel <shogun@kodeaffe.de>
| | Date:   Mon May 19 17:22:20 2008 +0000
| | 
| |     TODO:
| |     - Marked items to take charge of for next release.
| | 
| | M	src/TODO
| |   
* | commit f30892c45bea8082cd899284c5a0d8dc7c7eae59
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sun May 18 07:39:25 2008 +0000
| | 
| |     fix spelling mistake in cache and add some assertions to MPD
| | 
| | M	src/classifier/svm/MPDSVM.cpp
| | M	src/lib/Cache.h
| |   
* | commit 75471a4399a3f8e5dc2a998c07c10cb5e30098d9
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 09:22:44 2008 +0000
| | 
| |     update configure to also use 'native' as march/mcpu flag
| | 
| | M	src/configure
| |   
* | commit d2d08f4517d54a7da8ad5f08dd4662161744eb68
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 08:47:26 2008 +0000
| | 
| | M	src/.authors
| |   
* | commit 847a8859302e0b7b6af47c15dd2608c1265456f1
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Sat May 17 08:47:11 2008 +0000
| | 
| |     update list of authors
| | 
| | M	doc/pages/Authors.mainpage
| | D	doc/pages/authors
| |   
* | commit 0ff3d0ab2e8d8f161e34f3d21e52259162921564
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 20:21:28 2008 +0000
| | 
| |     more ideas
| | 
| | M	src/TODO
| |   
* | commit 542778651cfec636f81f6558a5ed0955ccb2280c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 19:23:45 2008 +0000
| | 
| |     this should fix yaroslavs latest and greatest memory leak :-)
| | 
| | M	src/classifier/svm/pr_loqo.cpp
| |   
* | commit 9337a1efd97fe2c6778da4f063f768d022170a2c
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 19:12:53 2008 +0000
| | 
| |     - add debug code for initing subkernels of combined kernel
| |     - add command to enable speedup of commwordstringkernel (useful for whole genome predictions)
| | 
| | M	src/guilib/GUICommands.h
| | M	src/interface/SGInterface.cpp
| | M	src/interface/SGInterface.h
| | M	src/kernel/CombinedKernel.cpp
| |   
* | commit 04ff9dcb3c2a02306e011160b15596b562cc3c64
| | Author: Soeren Sonnenburg <sonne@debian.org>
| | Date:   Fri May 16 16:57:49 2008 +0000
| | 
| |     fall back to the matlab prompt on error instead of ignoring errors (though they were printed)
| | 
| | M	src/interface/MatlabInterface.cpp
| |   
* | commit 0f96e2e8ff02c2a04ab16781ac7cafc4019cfb20
|/  Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
|   Date:   Fri May 16 15:14:44 2008 +0000
|   
|       BF: some SG_PRINT and printf statements into SG_INFO and SG_DEBUG
|   
|   M	src/distance/Distance.cpp
|   M	src/features/FKFeatures.cpp
|   M	src/features/TOPFeatures.cpp
|   M	src/kernel/Kernel.cpp
|   M	src/kernel/WeightedDegreeStringKernel.cpp
|   M	src/preproc/PCACut.cpp
|  
* commit 4c8c7ea1c9e2bf72199d63600bb6d3bf387ad2f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 16 08:26:44 2008 +0000
| 
|     add cheng to authors, fix footer and add a comment to remind me to run make ChangeLog before actually doing a release
| 
| M	Makefile
| M	doc/pages/shogun_footer.html
| M	src/.authors
| M	src/TODO
|  
* commit e31348a38f1d45299d1e8081430b84ca6c78b122
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 22:17:15 2008 +0000
| 
|     brain storming idea
| 
| M	src/TODO
|  
* commit 3f55657188ccf55d3e9269f27e3107d5d093a9ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 20:22:35 2008 +0000
| 
|     Preparing for new Release shogun_0.6.2
| 
| M	doc/Doxyfile
| M	r/Makefile
| M	r/sg/DESCRIPTION
|  
* commit 859a1d6a69462b2812edcb65eeee2d77f2801117
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 15 20:21:12 2008 +0000
| 
|     testsuite:
|     - Fixes in FixedDegreeString required to regenerate some test cases.
| 
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
|  
* commit 4e3ec6f1e7ef77fd6735e9225f8772cd686d8ad6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 15 20:18:38 2008 +0000
| 
|     features:
|     - Alphabet un/refing bug squished.
| 
| M	src/features/StringFeatures.h
|  
* commit c6280eac65a5e26643ef36e939833f190ba6a1b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:55:45 2008 +0000
| 
|     fix delete alphabet/missing SG_REF bug
| 
| M	src/features/StringFeatures.h
|  
* commit 5dc18549e46d3c455a4bc981b23d6cdd8b430afb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:40:35 2008 +0000
| 
|     assert that alphabet is not NULL
| 
| M	src/features/Alphabet.cpp
|  
* commit e50a2f04905633f23a3609e381770cf954160965
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:40:08 2008 +0000
| 
|     update news, fix directory name R -> r
| 
| M	r/Makefile
| M	src/NEWS
|  
* commit 01c6d71d77b8d9cccf572aaefd4a606573c4d34b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 19:19:05 2008 +0000
| 
|     transpose bug fix
| 
| M	src/lib/File.cpp
|  
* commit 045672a82d77de6ef4aa31b4ba380f1822df5cdc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 17:14:06 2008 +0000
| 
|     exit with code 1 instead of throwing exception when error occurs on cmdline if
| 
| A	cmdline/check_examples.sh
| M	cmdline/examples/libsvm.sg
| M	src/NEWS
| M	src/interface/CmdLineInterface.cpp
|  
* commit 85e2348f1eb556a873a44e4aa638a29417c7805f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:51:58 2008 +0000
| 
|     add (working!) libsvm example converted from octave
| 
| A	cmdline/examples/libsvm.sg
|  
* commit 14706f1fa0e7d2625bd46d7977f6c652fe5853fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:51:33 2008 +0000
| 
|     -fix yet another overflow bug in string features+cmdline if
|     -fix parsing of commands (with return arguments but no parameters) - occured when executing scripts only
|     -implement reading and writing of vectors
|     -rename test scripts to have .sg suffix
|     -add bigger test dataset
| 
| A	cmdline/examples/data/fm_test_real.dat
| A	cmdline/examples/data/fm_train_real.dat
| A	cmdline/examples/data/label_test.dat
| A	cmdline/examples/data/label_train.dat
| D	cmdline/examples/test.cmd
| A	cmdline/examples/test.sg
| M	src/features/StringFeatures.h
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
|  
* commit 01d1fa3c51ac8aa7a54e68befaa53d78441537bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 10:10:10 2008 +0000
| 
|     -fix bug for reading sparse features in cmdline if (1st dimension was always not read)
|     -use SG_ERROR if command is not known
|     -add some more examples / datasets:
|     
|     status:
|     	- things work from cmdline but lhs args not from file (why??)
|     	- string features: reading last line still broken (for strings not of same length)
| 
| M	cmdline/examples/data/fm_real.dat
| M	cmdline/examples/data/fm_stringchar_dna.dat
| A	cmdline/examples/data/fm_stringchar_dnamatrix.dat
| M	cmdline/examples/test.cmd
| M	src/interface/SGInterface.cpp
| M	src/lib/File.cpp
|  
* commit 39f9b1cb0657efdcf5e9a77ec009ddbd69be9def
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 15 06:34:35 2008 +0000
| 
|     fix writing of char features and sparse features
|     fix a bug in reading charstring features (forgotten overflow buffer *ugh*)
| 
| M	src/features/StringFeatures.h
| M	src/lib/File.cpp
|  
* commit c085ee8400b7928350e52fa1c43a1502800400fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 22:34:27 2008 +0000
| 
|     remove now (that the alphabet is a protected member variable) the obsoleted get lhs features (which was used to determine the alphabet only)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit f59c2ce9bb37cd13d979fb7669ae2b2e2f6cbd11
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 21:26:55 2008 +0000
| 
|     examples:
|     - Added a few pre-generated feature matrices to examples for command-line
|       interface.
| 
| A	cmdline/examples/data/fm_real.dat
| A	cmdline/examples/data/fm_real_sparse.dat
| A	cmdline/examples/data/fm_stringchar_dna.dat
|  
* commit c02680e3abb1903dacaea0f0df526b32da3e221e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 21:26:11 2008 +0000
| 
|     interface:
|     - Added support for writing STRING CHAR features and SPARSE REAL. Dunno if
|       it works, though. reading STRING CHAR is b0rked atm and not sure about
|       SPARSE REAL.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 41509d7a21fcbb27430bbb202bda2222fa39cd3f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 19:41:52 2008 +0000
| 
|     kernel:
|     - Got rid of two compiler warnings about unused variables.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 01c357d2b4e3eb2d20d2bf500f604930f3a1a755
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 19:38:15 2008 +0000
| 
|     interface:
|     - Added newline to error message in SGInterface.
|     - Removed the necessity of spaces before and after equal sign for lhs/rhs in
|       command-line interface.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 07ab6ddbc477ecbfedaa748b6cc988ca1cccca34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 19:18:31 2008 +0000
| 
|     Finally found the bug: get_alphabet() did a SG_REF for the modular interfaces
|     but not for the static ones. This function was heavily used when converting DNA
|     to 0,1,2,3 in the core loops of the string kernels, thus causing a massive
|     slowdown for them (factor 5-30).
|     
|     Also modfied the WD kernels to work with alphabets != DNA/RNA (but disable
|     linadd/batch comp. in this case + add a couple of assertions to trap misuse)
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 0cb28c8538cbcdb7c0dceb141f20da0876715825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 10:31:02 2008 +0000
| 
|     remove typedefs, use plain struct FOO only (otherwise older swig versions don't understand the %ignore FOO)
| 
| M	src/classifier/svm/SVM_light.h
|  
* commit 6a12c65d3634978a4a9f73b7be9ff9d41828c8a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 14 09:23:44 2008 +0000
| 
|     -also parse lhs
|     -simple ascii reading for cmdline interface should work for simple/sparse/string features now
|     -simple ascii writing for dense real features
| 
| M	cmdline/examples/test.cmd
| M	src/features/StringFeatures.h
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/kernel/Kernel.h
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 3469d7bccdea0cbce43481e76a2f5577321edf5f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 14 03:52:18 2008 +0000
| 
|     interface:
|     - Implemented CFile::read_real_valued_dense() for starters. There might be a
|       more elegent way, though.
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit 6db5e90d61ca0a62e713aa3c293691c54d42a656
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 13 20:55:39 2008 +0000
| 
|     drafty i/o
| 
| M	src/lib/File.cpp
| M	src/lib/File.h
|  
* commit f7326eb9d2289ddeb50c6d9a9a7dad118e88193c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 13 18:36:39 2008 +0000
| 
|     interface:
|     - Little compile warning fix.
| 
| M	src/interface/CmdLineInterface.cpp
|  
* commit d566dc40829c24b6091c3dbb4aadfed187fa13c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 13 12:51:08 2008 +0000
| 
|     add readline completion and filetype guessing (based on 1st 1024 bytes) if signature is not present
| 
| M	src/NEWS
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit eaffd890bda3fc124970e757062e155357520525
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 13 04:16:30 2008 +0000
| 
|     interface:
|     - Poked at reading features from files...
| 
| M	src/interface/CmdLineInterface.cpp
|  
* commit 96daa6b3556a0ad34704ed60141b6881d8b21a33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 18:53:36 2008 +0000
| 
|     - remove erraneous readline part from SGInterface
|     - delimit also on '\t\n'
|     - don't exit if shogun exception happens on interactive interface (merely display an error) and only quit on ctrl+D or quit/exit
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit ccc2b4a6089fd4d004b67cfe76d3595effae649a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 11:45:11 2008 +0000
| 
|     recover code from GUI/TextGUI to get interactive cmdline and tcp interface to work again
| 
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit aa33c31f2b9b6375d1b969baac474c0918b319a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 12 04:53:09 2008 +0000
| 
|     more documentation and compile fix for cmdline if
| 
| M	doc/Doxyfile
| M	src/interface/CmdLineInterface.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
|  
* commit 42dff850bba951a63caa8c6ba380c09ff434fb89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 10 08:39:08 2008 +0000
| 
|     add some documentation for these kernels
| 
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
|  
* commit c32c71a26051cde7a3128ea5beb431a0836c4b2a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 10 00:26:41 2008 +0000
| 
|     interface:
|     - Command line interface can read scalars now and is a bit more relaxed about
|       the command file's contents wrt comments and newlines.
|     - Added section cmdline and one testing command file in its subsection
|       examples.
| 
| A	cmdline/examples/test.cmd
| M	src/interface/CmdLineInterface.cpp
| M	src/interface/CmdLineInterface.h
| D	src/sg.m
|  
* commit ecbe6e2458f37b3a4c47c46b7e165ec4cc515b64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:56:41 2008 +0000
| 
|     library:
|     - Extended class CIO by method skip_blanks to skip spaces and tabs in strings.
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit b511d9a1d9cc74c1fb2a0573f92360c50ac80d76
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:31:06 2008 +0000
| 
|     interface:
|     - Improved implementation of command '!' (system) to make it suitable for
|       command line interface and increase flexibility for other interfaces - you
|       can now pass several arguments to the command.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 4c1a1a89211e9b2c770b1796e31e91d89aaf1a1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 23:00:37 2008 +0000
| 
|     interface:
|     - Fixed little bug in help string for command 'loglevel'.
| 
| M	src/interface/SGInterface.cpp
|  
* commit a1f7e299eca0626b5921c394e29b46b38ac80046
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 9 21:50:33 2008 +0000
| 
|     interface:
|     - Made command-line interface operational, it does not do anything at the
|       moment, though.
|     io:
|     - Added some ifdef WIN32 around CSignal::unset_handler() in io::message().
| 
| M	src/configure
| A	src/interface/CmdLineInterface.cpp
| A	src/interface/CmdLineInterface.h
| M	src/interface/SGInterface.cpp
| M	src/lib/io.cpp
|  
* commit 4e1fe6737e9248dda6f0822cfdce6505abc2d883
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 12:55:43 2008 +0000
| 
|     remove debug code
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 34c705fc85078d5c8667c2c8f78e931d8330de77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 12:48:49 2008 +0000
| 
|     init kernel caches when multiple kernels are in use for svm light
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit be127aeb82ab1376df0f9d2bf43684228e3a96b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 10:30:04 2008 +0000
| 
|     - create symlinks for octave and matlab and introduce make check-examples to
|     check examples for current interface.
|     - make spec/wd/lik kernel examples run non interactively
|     - don't even try to run examples on matlab (as it doesn't give reasonable return codes!)
|     - speed up modular R by precompiling R files (and loading the ones in the examples)
|     - fix distribution octave-modular example
|     
|     AFAICT all examples for all interface run through.
| 
| A	matlab
| M	matlab_and_octave/check_examples.sh
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/wd_kernel.m
| A	octave
| M	octave-modular/examples/all_distribution.m
| M	r-modular/examples/all_classifier.R
| M	r-modular/examples/all_clustering.R
| M	r-modular/examples/all_distance.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_kernels.R
| M	r-modular/examples/all_preproc.R
| M	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| M	src/Makefile
|  
* commit 959704f746cc7424fa0b0ee36249b994846749e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 9 09:14:04 2008 +0000
| 
|     add tests to also run examples
| 
| A	matlab_and_octave/check_examples.sh
| A	octave-modular/check_examples.sh
| A	python-modular/check_examples.sh
| M	python-modular/examples/numpy_commands.py
| A	python/check_examples.sh
| A	r-modular/check_examples.sh
| A	r/check_examples.sh
| M	src/Makefile
|  
* commit fabff1e72db8f2bdb76e38a31ccbced47181e530
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 8 20:27:39 2008 +0000
| 
|     fix crasher when precompute is true
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit f55c2337656b2487060d4b235588237c8fb12b40
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:54:38 2008 +0000
| 
|     interface/examples:
|     - Added commands train_clustering, new_clustering, get_clustering and modified
|       examples accordingly.
| 
| M	matlab_and_octave/examples/all_clustering.m
| M	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| M	matlab_and_octave/examples/graphical/cluster_kmeans.m
| M	python/examples/all_clustering.py
| M	r/examples/all_clustering.R
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
|  
* commit 65a1158b0731a0465ee9880aaf5fa9f54dee7f55
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:35:15 2008 +0000
| 
|     examples:
|     - Removed superflous example.
| 
| D	matlab_and_octave/examples/stringfeatures.m
|  
* commit 8f7b5d8f756a4b9ded051ed15e164126bfd02a92
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 19:33:34 2008 +0000
| 
|     examples:
|     - Replaced 'svm_train' by 'train_classifier' and 'svm_classify' by 'classify'.
|     - Replaced a few more commands related to regressions which were overlooked in
|       previous check-in.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/spec_interp.m
| M	matlab_and_octave/examples/graphical/svm_classification.m
| M	matlab_and_octave/examples/graphical/svm_multiclass.m
| M	matlab_and_octave/examples/graphical/svr_regression.m
| M	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| M	matlab_and_octave/examples/graphical/test_poim_wds.m
| M	matlab_and_octave/examples/graphical/test_regression.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/graphical/test_spec_interp.m
| M	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| M	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| M	matlab_and_octave/examples/graphical/wds_consensus.m
| M	matlab_and_octave/examples/graphical/wds_shift_interp.m
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_custom_kernel.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_ocas_normalization.m
| M	matlab_and_octave/examples/tests/test_one_class_svm.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_sliding_window.m
| M	matlab_and_octave/examples/tests/test_spec_consensus.m
| M	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| M	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wds_consensus.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	matlab_and_octave/examples/wd_kernel.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	python/examples/all_classifier.py
| M	python/examples/graphical/svm_classificaton.py
| M	python/examples/graphical/svr_regression.py
| M	python/examples/test_mkl.py
| M	r/examples/all_classifier.R
| M	r/examples/graphical/svm_classification.R
| M	r/examples/graphical/svr_regression.R
|  
* commit d0def506c526421d4058b952ed93662811960efd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 18:57:41 2008 +0000
| 
|     interface:
|     - Added new commands new_regression and train_regression (alias to
|       new_classifier/train_classifier) and adjusted examples.
|     - Completely enabled KRR in examples.
| 
| M	matlab_and_octave/examples/all_regression.m
| M	python/examples/all_regression.py
| M	r/examples/all_regression.R
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
|  
* commit b7872ebc80eee288542be63fdc2cb58627d0246f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 8 18:53:49 2008 +0000
| 
|     add some progress to libsvm
| 
| M	src/classifier/svm/SVM_libsvm.cpp
|  
* commit e584a7a8b9e475b9ee972db5625f8b9522431983
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 8 18:23:19 2008 +0000
| 
|     interface:
|     - Fixed KRR in static interface.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/interface/SGInterface.cpp
| M	src/regression/KRR.cpp
|  
* commit 5eb49d0ec9468ea812cf0f571658568cbcafa9b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 23:08:16 2008 +0000
| 
|     testsuite:
|     - Regenerated testdata.
| 
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| M	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| M	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| M	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_15_1.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
|  
* commit fa100a83f5871777a153f1965376264c97049180
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 23:07:36 2008 +0000
| 
|     testsuite:
|     - Seemingly found a work-around to problem with randomness testgenerator vs.
|       tester.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
|  
* commit 1fcea2ebb8e0ad9a5631d2d3364176c9994f6968
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed May 7 21:43:14 2008 +0000
| 
|     testsuite:
|     - Updated generator to reflect changes made within Shogun.
| 
| M	testsuite/generator/clustering.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
|  
* commit be7d03f994f241ce77e63bca1f5627d2265067b1
| Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
| Date:   Wed May 7 20:02:51 2008 +0000
| 
|     printf -> SG_S{WARNING,ERROR} withing svm/gpm.cpp
| 
| M	src/classifier/svm/gpm.cpp
|  
* commit b5e150797b4f68dfe0b38ad92e190dbbca90c3bc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 22:50:06 2008 +0000
| 
|     documentation:
|     - Possibly improved issue with CFeatures in swig-autodoc-generation.
| 
| M	src/.scrub_docstrings.py
|  
* commit 81a549be6454eac2677efb8a6b6bc7a82c85e213
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 21:38:27 2008 +0000
| 
|     examples:
|     - Converted examples for R interface.
| 
| M	r/examples/all_classifier.R
| M	r/examples/all_clustering.R
| M	r/examples/all_distance.R
| M	r/examples/all_distribution.R
| M	r/examples/all_kernels.R
| M	r/examples/all_preproc.R
| M	r/examples/all_regression.R
| M	r/examples/graphical/hmm.R
| M	r/examples/graphical/svm_classification.R
| M	r/examples/graphical/svr_regression.R
|  
* commit 87a4d92257c55156a15782a36164317f40079785
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 19:28:36 2008 +0000
| 
|     examples:
|     - Converted examples for Python interface.
| 
| M	python/examples/all_classifier.py
| M	python/examples/all_clustering.py
| M	python/examples/all_distance.py
| M	python/examples/all_distribution.py
| M	python/examples/all_kernels.py
| M	python/examples/all_preproc.py
| M	python/examples/all_regression.py
| M	python/examples/graphical/svm_classificaton.py
| M	python/examples/graphical/svr_regression.py
| M	python/examples/test_mkl.py
|  
* commit 65e0d0b4dce3a0401c1faa9cad987859d7d432e0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 19:28:08 2008 +0000
| 
|     interface:
|     - Fixed order of parameters in Poly kernel.
|     - Extended help string of train_classifier to include optional parameters.
| 
| M	src/interface/SGInterface.cpp
|  
* commit d69bc152baede3cbb567c3c93556ac586953b0b3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 18:15:59 2008 +0000
| 
|     interface:
|     - Found a few syntax errors in CPLEX-related examples when run through Matlab.
| 
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl.m
|  
* commit 727693327cc45e92d977f18c7269b8093691a83b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue May 6 18:14:53 2008 +0000
| 
|     interface:
|     - Improved bool handling in Matlab interface.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 086ffb1118653e4304bed0a4a0dbc6086b35f681
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 23:41:50 2008 +0000
| 
|     examples:
|     - Converted examples for Matlab and Octave to new format; moved old examples
|       into directory 'legacy'.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	matlab_and_octave/examples/all_clustering.m
| M	matlab_and_octave/examples/all_distance.m
| M	matlab_and_octave/examples/all_distribution.m
| M	matlab_and_octave/examples/all_kernels.m
| M	matlab_and_octave/examples/all_preproc.m
| M	matlab_and_octave/examples/all_regression.m
| M	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| M	matlab_and_octave/examples/graphical/cluster_kmeans.m
| M	matlab_and_octave/examples/graphical/entropy.m
| M	matlab_and_octave/examples/graphical/hmm.m
| M	matlab_and_octave/examples/graphical/lda_classification.m
| M	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| M	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| M	matlab_and_octave/examples/graphical/spec_interp.m
| M	matlab_and_octave/examples/graphical/svm_classification.m
| M	matlab_and_octave/examples/graphical/svm_multiclass.m
| M	matlab_and_octave/examples/graphical/svr_regression.m
| M	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| M	matlab_and_octave/examples/graphical/test_poim_wds.m
| M	matlab_and_octave/examples/graphical/test_regression.m
| M	matlab_and_octave/examples/graphical/test_regression_mkl.m
| M	matlab_and_octave/examples/graphical/test_spec_interp.m
| M	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| M	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| M	matlab_and_octave/examples/graphical/wds_consensus.m
| M	matlab_and_octave/examples/graphical/wds_shift_interp.m
| A	matlab_and_octave/examples/legacy/all_classifier.m
| A	matlab_and_octave/examples/legacy/all_clustering.m
| A	matlab_and_octave/examples/legacy/all_distance.m
| A	matlab_and_octave/examples/legacy/all_distribution.m
| A	matlab_and_octave/examples/legacy/all_kernels.m
| A	matlab_and_octave/examples/legacy/all_preproc.m
| A	matlab_and_octave/examples/legacy/all_regression.m
| A	matlab_and_octave/examples/legacy/graphical/cluster_hierarchical.m
| A	matlab_and_octave/examples/legacy/graphical/cluster_kmeans.m
| A	matlab_and_octave/examples/legacy/graphical/entropy.m
| A	matlab_and_octave/examples/legacy/graphical/hmm.m
| A	matlab_and_octave/examples/legacy/graphical/lda_classification.m
| A	matlab_and_octave/examples/legacy/graphical/local_alignment_kernel.m
| A	matlab_and_octave/examples/legacy/graphical/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/legacy/graphical/spec_interp.m
| A	matlab_and_octave/examples/legacy/graphical/svm_classification.m
| A	matlab_and_octave/examples/legacy/graphical/svm_multiclass.m
| A	matlab_and_octave/examples/legacy/graphical/svr_regression.m
| A	matlab_and_octave/examples/legacy/graphical/test_gnpp_svm.m
| A	matlab_and_octave/examples/legacy/graphical/test_poim_wds.m
| A	matlab_and_octave/examples/legacy/graphical/test_regression.m
| A	matlab_and_octave/examples/legacy/graphical/test_regression_mkl.m
| A	matlab_and_octave/examples/legacy/graphical/test_spec_interp.m
| A	matlab_and_octave/examples/legacy/graphical/test_svm_multiclass.m
| A	matlab_and_octave/examples/legacy/graphical/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/legacy/graphical/wds_consensus.m
| A	matlab_and_octave/examples/legacy/graphical/wds_shift_interp.m
| A	matlab_and_octave/examples/legacy/liblinear.m
| A	matlab_and_octave/examples/legacy/lik_kernel.m
| A	matlab_and_octave/examples/legacy/lpboost.m
| A	matlab_and_octave/examples/legacy/lpm.m
| A	matlab_and_octave/examples/legacy/markov_chain.m
| A	matlab_and_octave/examples/legacy/mkl_classify_christmas_star.m
| A	matlab_and_octave/examples/legacy/mkl_regression_3sine_waves.m
| A	matlab_and_octave/examples/legacy/mkl_regression_sine.m
| A	matlab_and_octave/examples/legacy/spec_kernel.m
| A	matlab_and_octave/examples/legacy/string_features.m
| A	matlab_and_octave/examples/legacy/stringfeatures.m
| A	matlab_and_octave/examples/legacy/svmocas.m
| A	matlab_and_octave/examples/legacy/svmsgd.m
| A	matlab_and_octave/examples/legacy/tests/test_classifier.m
| A	matlab_and_octave/examples/legacy/tests/test_combined.m
| A	matlab_and_octave/examples/legacy/tests/test_combined2.m
| A	matlab_and_octave/examples/legacy/tests/test_complex_scenario.m
| A	matlab_and_octave/examples/legacy/tests/test_custom_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_interface.m
| A	matlab_and_octave/examples/legacy/tests/test_kernel_optimization.m
| A	matlab_and_octave/examples/legacy/tests/test_knn.m
| A	matlab_and_octave/examples/legacy/tests/test_l2svm.m
| A	matlab_and_octave/examples/legacy/tests/test_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_linear_methods.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl_svr.m
| A	matlab_and_octave/examples/legacy/tests/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/legacy/tests/test_ocas_normalization.m
| A	matlab_and_octave/examples/legacy/tests/test_one_class_svm.m
| A	matlab_and_octave/examples/legacy/tests/test_regression_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_sliding_window.m
| A	matlab_and_octave/examples/legacy/tests/test_sparse.m
| A	matlab_and_octave/examples/legacy/tests/test_sparse_methods.m
| A	matlab_and_octave/examples/legacy/tests/test_spec_consensus.m
| A	matlab_and_octave/examples/legacy/tests/test_subgradsvm.m
| A	matlab_and_octave/examples/legacy/tests/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/legacy/tests/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/legacy/tests/test_wd_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_wd_linadd.m
| A	matlab_and_octave/examples/legacy/tests/test_wdocas.m
| A	matlab_and_octave/examples/legacy/tests/test_wds_consensus.m
| A	matlab_and_octave/examples/legacy/tests/test_wds_kernel.m
| A	matlab_and_octave/examples/legacy/tests/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/legacy/tests/test_weighted_spectrum.m
| A	matlab_and_octave/examples/legacy/wd_kernel.m
| A	matlab_and_octave/examples/legacy/wds_kernel.m
| A	matlab_and_octave/examples/legacy/weighted_spec.m
| M	matlab_and_octave/examples/liblinear.m
| M	matlab_and_octave/examples/lik_kernel.m
| M	matlab_and_octave/examples/lpboost.m
| M	matlab_and_octave/examples/lpm.m
| M	matlab_and_octave/examples/markov_chain.m
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
| M	matlab_and_octave/examples/spec_kernel.m
| M	matlab_and_octave/examples/string_features.m
| M	matlab_and_octave/examples/stringfeatures.m
| M	matlab_and_octave/examples/svmocas.m
| M	matlab_and_octave/examples/svmsgd.m
| M	matlab_and_octave/examples/tests/test_classifier.m
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_custom_kernel.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_knn.m
| M	matlab_and_octave/examples/tests/test_l2svm.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_linear_methods.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_ocas_normalization.m
| M	matlab_and_octave/examples/tests/test_one_class_svm.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_sliding_window.m
| M	matlab_and_octave/examples/tests/test_sparse.m
| M	matlab_and_octave/examples/tests/test_sparse_methods.m
| M	matlab_and_octave/examples/tests/test_spec_consensus.m
| M	matlab_and_octave/examples/tests/test_subgradsvm.m
| M	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| M	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wdocas.m
| M	matlab_and_octave/examples/tests/test_wds_consensus.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	matlab_and_octave/examples/wd_kernel.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	matlab_and_octave/examples/weighted_spec.m
|  
* commit a4058e4296c5f215f2339333c87a6b402b8269e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 23:04:11 2008 +0000
| 
|     interface:
|     - Clearer output when kernel is initialised with wrong target.
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 5656220399ebffcf917aa8784cd3e41fe631621e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 21:05:12 2008 +0000
| 
|     interface:
|     - Fixed recognition of WEIGHTEDDEGREEPOS2_NONORM.
| 
| M	src/interface/SGInterface.cpp
|  
* commit d0fe817f012e139f47b2d4b9090c215760aaf1c2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 5 19:22:34 2008 +0000
| 
|     allow setting of custom weights for W.C.W.S.K :-)
| 
| M	src/NEWS
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.i
|  
* commit d04e79431372e2b7832930b85367e02f13e6fcb1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 19:18:28 2008 +0000
| 
|     interface:
|     - Completed support for KRR. KRR seems broken, though.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f9290ae33aebc82dbe021092bef559152d8a5ed5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon May 5 17:53:27 2008 +0000
| 
|     interface:
|     - Usage of send_command will spit out a warning now.
|     - Help texts adjusted to not use strings as method arguments.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 5cbad97b7dc6bca981138705d8a3bf7ddbad9b84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 22:49:20 2008 +0000
| 
|     the compute_helper function in commwordstringkernel was not anymore declared
|     virtual. this broke weightedcommwordstringkernel for quite some releases :(
|     
|     extract the diagonal optimization into a separate function compute_diag, this
|     should not be turned on for the weightedcommwordstringkernel
| 
| M	src/base/SGObject.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit cfae7920e5a539c1cea6118b139aebbe84073ad8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 10:23:52 2008 +0000
| 
|     - finish porting r-modular examples (for all feature types...)
|     - remove executable bit from examples
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_clustering.m
| M	octave-modular/examples/all_distance.m
| M	octave-modular/examples/all_distribution.m
| M	octave-modular/examples/all_kernels.m
| M	octave-modular/examples/all_preproc.m
| M	octave-modular/examples/all_regression.m
| M	r-modular/examples/all_distance.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_kernels.R
| M	r-modular/examples/all_preproc.R
|  
* commit 230cd2cfa9b303bebbd20a81d305615f3ad228dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 06:21:56 2008 +0000
| 
|     make string examples work with r-modular
| 
| M	r-modular/examples/all_classifier.R
|  
* commit 0ce001582cabd26b6864d5b93fe6385b34dd96cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 05:49:56 2008 +0000
| 
|     also make the get_deriv* calls work
| 
| M	r-modular/examples/all_distribution.R
|  
* commit b645686cbc7b3e89b91ee491da0287e15f0d1884
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun May 4 05:34:35 2008 +0000
| 
|     string features work now - adding examples for distributions :)
| 
| M	r-modular/examples/all_distribution.R
|  
* commit 28b41ae4e63d1e7af16ff87d28ee56b0b45a68be
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Sat May 3 22:14:45 2008 +0000
| 
|     Removed irritating Done prints
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit cda6422e847273a3335e128587afad8aae7b7ff9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 3 22:09:32 2008 +0000
| 
|     interface:
|     - Made command 'clear' do something useful.
| 
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f7c8cdc76886f6a4a73a5d7815b8f582b5dfc336
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat May 3 01:24:04 2008 +0000
| 
|     interface:
|     - It is unnecessary now to supply the number of chars you want to have
|       matched in strmatch if you want to have an exact match.
|     - Some more little fixes.
| 
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d76f016d17a132ab40ac51c6b70ca7443812b4ef
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 23:50:22 2008 +0000
| 
|     interface:
|     - Improved error handling for vectors and handling of spaces in command
|       strings.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 009a88e6939838080fb531d0d0a31e517311bdb1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 21:38:39 2008 +0000
| 
|     interface:
|     - Fixed a bug in default value for SVM C2.
| 
| M	src/interface/SGInterface.cpp
|  
* commit ddfb5a92447038e80958fdb02a096b80969b2e4d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 20:11:21 2008 +0000
| 
|     interface:
|     - Made little changes on how WEIGHTEDDEGREEPOS2/3 are implemented.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit ef031ef510ad5b25bdd96d2d241d257cea7c91b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 2 18:51:21 2008 +0000
| 
|     better do explicit casts, mxChar is 16bit, CHAR only 8
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 5f7093368c2510578e1cc506899fbdf1a001fc1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 2 15:54:34 2008 +0000
| 
|     speed up loading shogun modules from R a lot
| 
| M	octave-modular/examples/all_distance.m
| M	r-modular/examples/libsvm.R
| M	src/Makefile
|  
* commit b4cf998aa190e0536c65646fd73ffc2f59c7e71a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri May 2 05:03:28 2008 +0000
| 
|     interface:
|     - Fixed a couple of issues, including WeightedDegreePositionString. There
|       seems be a problem with support vectors somewhere, though.
| 
| M	matlab_and_octave/examples/tests/test_combined.m
| M	matlab_and_octave/examples/tests/test_combined2.m
| M	matlab_and_octave/examples/tests/test_complex_scenario.m
| M	matlab_and_octave/examples/tests/test_kernel_optimization.m
| M	matlab_and_octave/examples/tests/test_linadd.m
| M	matlab_and_octave/examples/tests/test_mkl.m
| M	matlab_and_octave/examples/tests/test_mkl_svr.m
| M	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| M	matlab_and_octave/examples/tests/test_regression_linadd.m
| M	matlab_and_octave/examples/tests/test_wd_kernel.m
| M	matlab_and_octave/examples/tests/test_wd_linadd.m
| M	matlab_and_octave/examples/tests/test_wds_kernel.m
| M	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| M	matlab_and_octave/examples/wds_kernel.m
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit e06e03c63adab516dea0599c6cd536ad6382b39b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 20:55:53 2008 +0000
| 
|     interface:
|     - Obliterated gui/.
|     - The previous check-in should have meant that WeightedDegree* is b0rked.
| 
| D	src/gui/GUI.cpp
| D	src/gui/GUI.h
| D	src/gui/TextGUI.cpp
| D	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit a6d9db043ff0770a85a87e98a62e7fe6874e47bf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:42:47 2008 +0000
| 
|     interface:
|     - Implemented all changes necessary to support old and new interface.
|       WeightedDegree* (read: vectors in a string) is apparently, though.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 3e399e261e70255440edb8996793643f4ce3fe24
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:36:12 2008 +0000
| 
|     matlab_and_octave examples:
|     - Provide better training data and labels for Perceptron.
|     - Command 'new_knn' was removed, switched to 'new_classifier KNN'.
| 
| M	matlab_and_octave/examples/all_classifier.m
|  
* commit 52fa68e13c72733e3f05497e2676da37d5b89992
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:33:51 2008 +0000
| 
|     matlab_and_octave examples:
|     - Similar fixes like in previous check-in: clear_kernel and make a a real
|       matrix out of train data.
| 
| M	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| M	matlab_and_octave/examples/mkl_regression_sine.m
|  
* commit 780f6ab986575381ebcef8ab103e1eaf3978ac8a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu May 1 02:05:12 2008 +0000
| 
|     matlab_and_octave examples:
|     - Removed 's' from call to non-existing command 'clean_kernels'.
| 
| M	matlab_and_octave/examples/mkl_classify_christmas_star.m
|  
* commit 554cbf366effddb62a178e54ae6273564d5801f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 09:18:32 2008 +0000
| 
|     add examples for kernels (not byte/word/char based ones as R doesn't support 'byte,word' and there are still problems with R+swig and enums and strings)
| 
| M	r-modular/examples/all_classifier.R
| A	r-modular/examples/all_kernels.R
|  
* commit 86d87d9bda56afd3dd8db89f7d768fe5e1a37085
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:39:22 2008 +0000
| 
|     convert examples for distances
| 
| A	r-modular/examples/all_distance.R
|  
* commit 497e50a534e0a88f8684f4dd437a848c3c03174d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:21:27 2008 +0000
| 
|     add example for clustering
| 
| A	r-modular/examples/all_clustering.R
|  
* commit 43624bf096ba4ecd616ceef41487416c8c5f881a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 08:15:21 2008 +0000
| 
|     add examples for preprocs
| 
| A	r-modular/examples/all_preproc.R
|  
* commit 851b9550b2537953deede215409022cec0d075ba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 30 07:49:17 2008 +0000
| 
|     - really disable garbage collection in r-modular (crashes if on)
|     - implement r-typemaps for setting strings
|     - classifier and regression examples for R work now (except for string based/enum requiring functions)
| 
| M	README
| A	r-modular/examples/all_classifier.R
| M	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_regression.R
| M	r/examples/graphical/hmm.R
| M	src/base/SGObject.i
| M	src/lib/r.h
| M	src/lib/r_typemaps.i
|  
* commit fcb3e75c7ea49bd213108d5ddf83ceb8fe69f585
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 30 05:27:53 2008 +0000
| 
|     classifier:
|     - Fix: Perceptron::train even returned false when it had converged.
| 
| M	src/classifier/Perceptron.cpp
|  
* commit 3a3e2743f1701f5d7b6addfaa721f79adf2fca60
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 30 01:54:56 2008 +0000
| 
|     lib:
|     - Introduced EPreProcType.
| 
| M	src/lib/common.h
|  
* commit 57c576e3954a40ede57bded34053e2fd069d4506
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 28 21:27:42 2008 +0000
| 
|     interface:
|     - Interface now supports new and legacy way to handle features.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/interface/SGInterface.cpp
|  
* commit 8745d4a3154a1010dccae5d3607a580e12d8bbb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 27 19:09:18 2008 +0000
| 
|     ported regression examples to r-modular - Rswig seems to work now with my
|     recent fixes - the other examples are still missing though WIP
| 
| A	r-modular/examples/all_distribution.R
| M	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| M	r-modular/examples/libsvm.R
| M	src/NEWS
|  
* commit c5d157e3450aec0e35853b21ce722bcfd978628a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 25 23:05:52 2008 +0000
| 
|     interface
|     - Implemented command set/add_kernel in a legacy-tolerant way. all_* examples
|       in octave run through, so there are only spiteful bugs.
| 
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 6033cc92acb976b9eb707ba6df92484c1f21baff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 16:44:28 2008 +0000
| 
|     There was actually no bug in SWIG but in R 2.7 (and still is - long input lines
|     cause it to crash, solution posted to Rd mailinglist). Which means R+swig works
|     in principle. However are definitely a couple of (minor/easily fixable) bugs in
|     the R wrapper that need further fixes before shogun fully works:
|     
|     1) the dispatcher (called when an object is constructed) wrongly calls
|     	extends(argtypes[1], 'numeric')) which will never be true for a matrix (some
|     	magic is needed here). Workaround for now is to not use
|     	RealFeatures(my_matrix), but
|     	rf=RealFeatures()
|     	rf$copy_feature_matrix(rf, my_matrix)
|     2) arguments that take a double* will all be modified via as.numeric(arg) which
|     	converts matrices -> vectors. IMHO it does not make sense to do any conversion
|     	at all but for compatibility a workaround for now is to use
|     	%{  if (!is.numeric($input)) $input = as.numeric($input) %}
|     	in the scoercein typemap
|     3) the R2.7 swig mkCharEnc fix (patch submitted)
| 
| A	r-modular/examples/all_regression.R
| M	r-modular/examples/first_shot.R
| A	r-modular/examples/libsvm.R
| M	r/Makefile
| M	src/base/SGObject.h
| M	src/classifier/svm/SVM_light.i
| M	src/lib/Mathematics.i
| M	src/lib/Signal.i
| M	src/lib/Trie.i
| M	src/lib/io.i
| M	src/lib/r_typemaps.i
|  
* commit 2ef22c674cd7f178f2d2b5a6a056701fccbd4a7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 07:27:39 2008 +0000
| 
|     move r-modular to tld and fix R -> r in Makefile
| 
| M	Makefile
| M	README
| A	r-modular/examples/first_shot.R
| D	r/R-modular/examples/first_shot.R
|  
* commit 4167676cde9b1a96b9d9573a4f1102b4661db2c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 25 07:25:39 2008 +0000
| 
|     rename R-modular / R to r-modular / r (all lowercase )
| 
| D	R-modular/examples/first_shot.R
| D	R/Makefile
| D	R/README.txt
| D	R/examples/all_classifier.R
| D	R/examples/all_clustering.R
| D	R/examples/all_distance.R
| D	R/examples/all_distribution.R
| D	R/examples/all_kernels.R
| D	R/examples/all_preproc.R
| D	R/examples/all_regression.R
| D	R/examples/graphical/hmm.R
| D	R/examples/graphical/svm_classification.R
| D	R/examples/graphical/svr_regression.R
| D	R/sg/COPYING
| D	R/sg/DESCRIPTION
| D	R/sg/R/shogun.R
| D	R/sg/R/zzz.R
| D	R/sg/demo/00Index
| D	R/sg/demo/mkl_lin_sine_mix.R
| D	R/sg/demo/mkl_sine_regression.R
| D	R/sg/demo/string_kernel.R
| D	R/sg/demo/wd_mkl.R
| D	R/sg/demo/x-max_class.R
| D	R/sg/inst/doc/manual.pdf
| D	R/sg/inst/doc/sg.Rnw
| D	R/sg/tests/startup.R
| D	R/testcases/read_mfile.R
| D	R/testcases/run.sh
| D	R/testcases/test_R.R
| D	R/testcases/test_kernels.R
| A	r/Makefile
| A	r/R-modular/examples/first_shot.R
| A	r/README.txt
| A	r/examples/all_classifier.R
| A	r/examples/all_clustering.R
| A	r/examples/all_distance.R
| A	r/examples/all_distribution.R
| A	r/examples/all_kernels.R
| A	r/examples/all_preproc.R
| A	r/examples/all_regression.R
| A	r/examples/graphical/hmm.R
| A	r/examples/graphical/svm_classification.R
| A	r/examples/graphical/svr_regression.R
| A	r/sg/COPYING
| A	r/sg/DESCRIPTION
| A	r/sg/R/shogun.R
| A	r/sg/R/zzz.R
| A	r/sg/demo/00Index
| A	r/sg/demo/mkl_lin_sine_mix.R
| A	r/sg/demo/mkl_sine_regression.R
| A	r/sg/demo/string_kernel.R
| A	r/sg/demo/wd_mkl.R
| A	r/sg/demo/x-max_class.R
| A	r/sg/inst/doc/manual.pdf
| A	r/sg/inst/doc/sg.Rnw
| A	r/sg/tests/startup.R
| A	r/testcases/read_mfile.R
| A	r/testcases/run.sh
| A	r/testcases/test_R.R
| A	r/testcases/test_kernels.R
| M	src/Makefile
| M	src/configure
|  
* commit cbdf6c2e297824ad4730797a7d8747a08ab20358
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 24 20:31:42 2008 +0000
| 
|     interface:
|     - Fixed an erroneous check for boolean scalar in Octave interface.
| 
| M	src/interface/OctaveInterface.cpp
|  
* commit 59b882ada2f3530f0f4eed68e4d4277bf2f2d6f7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 24 10:12:15 2008 +0000
| 
|     - fix crasher in dynprog (double free)
|     - cosmetic code formatting in svm
| 
| M	src/classifier/svm/SVM.cpp
| M	src/structure/DynProg.cpp
|  
* commit c37de0282e3f8ef15deaa19d13aa8745e37544f6
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Mon Apr 21 07:54:22 2008 +0000
| 
|     Hack to make sure that static sg_io has same display progress settings as svm.io
| 
| M	src/classifier/svm/SVM.cpp
| M	src/lib/io.h
|  
* commit 72d6fa79b48a006f8b6e7e9b23ee8c24c6a43e22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 10:04:18 2008 +0000
| 
|     install octave files with executable bit set
| 
| M	src/Makefile
|  
* commit ba81013e7f8398679c3ad4c00e89aa540bb9679e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 08:53:50 2008 +0000
| 
|     fix PYTHONPATH on make test
| 
| M	src/Makefile
|  
* commit e05530fe7df8ecf0f413460072d51c874f60c44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 06:23:40 2008 +0000
| 
|     add some automagic website documentation updates
| 
| M	Makefile
|  
* commit 37407754ddeac48ea29e4442373341452b570840
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:43:58 2008 +0000
| 
|     Preparing for new Release shogun_0.6.1
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/Doxyfile
| M	src/ChangeLog
|  
* commit 20c4c45af55407f282c29244f3cf1faf9f3011ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:39:25 2008 +0000
| 
|     let make distclean also remove octave-core files, cplex.log and .swp files
| 
| M	src/Makefile
|  
* commit 9ecda4f5c5c223a7435634e1716e4de13fe61bed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 19 05:32:02 2008 +0000
| 
|     categorize help in topics
| 
| M	src/NEWS
| M	src/interface/SGInterface.cpp
|  
* commit 92503b2f4532240f15d8bd78e261e93abc5c3076
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 18:10:56 2008 +0000
| 
|     interface:
|     - Extended help command to list commands in groups.
| 
| M	src/interface/SGInterface.cpp
|  
* commit a0a2b05abe7b14b5970bb968a0c4444282aca513
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 17:42:45 2008 +0000
| 
|     interface:
|     - Renamed all 'action' to 'command', incl. relating names
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 7b200b38226eb36367a3c98f3fa4b73ebf0a8d5f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 17:37:10 2008 +0000
| 
|     interface:
|     - Added remaining commands to make send_command obsolete.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 086f0edf709ae290c3f4d82967e1beea8d9b0574
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 17:12:14 2008 +0000
| 
|     update news
| 
| M	src/NEWS
|  
* commit 0d6ee4b3ded52dac9c01599b672ba57beb8cd4a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:54:05 2008 +0000
| 
|     type : -> ;
| 
| M	src/kernel/Kernel.h
|  
* commit 143a9cf357f68ea61ddd232d6c09186e41922ab1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:34:31 2008 +0000
| 
|     resize cache fix, thanks Christian Widmer
| 
| M	src/kernel/Kernel.h
|  
* commit a82d2ffde33baa4266a7654d59e92edc590953d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 16:16:04 2008 +0000
| 
|     Disable director in all swig files. This has big impact on
|     
|     a) speed
|     b) wrapper code size
|     c) inheritance.
|     
|     Good news first, every virtual function should be *much faster* now, as the
|     call is not anymore rerouted via the director wrapper to python and then from
|     there to the correct c++ function. Furthermore the wrapper code size decreases
|     a lot, the inheritance chain is shorter and compile times are reduced.
|     
|     The sad news is that virtual functions that *were overloaded via python code*
|     will not be used from inside the C++ code (not sure if anyone expected this to
|     		work - so it might not actually be that bad).
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_regression.m
| M	src/classifier/Classifier.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
|  
* commit 2eef0c29ab490f7d9df19c426d18a337463bcaee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 09:11:55 2008 +0000
| 
|     further preps for the release
| 
| M	src/NEWS
|  
* commit 30bf1265df0a92e7937acbbd122ef36c7a766125
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 18 07:29:20 2008 +0000
| 
|     with Xavier Delacour recent swig fix all examples run through as long as only a
|     single thread is used
| 
| M	octave-modular/examples/all_classifier.m
| M	octave-modular/examples/all_regression.m
| M	octave-modular/examples/libsvm.m
|  
* commit 71a30a9eb2e9cc6c8cf7cb0dcb86f572cd7c47eb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Apr 18 00:28:21 2008 +0000
| 
|     interface:
|     - Added a few more commands to make send_command obsolete in the near future.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d136545517773cfc0b0d0ba8021ef388f06b6944
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 17 22:55:29 2008 +0000
| 
|     interface:
|     - Added a bunch of commands to make send_command obsolete in the near future.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b4edbfeb7af7d2119df6c8c214e476109a403390
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 17 10:24:35 2008 +0000
| 
|     - fix a memory leak in KRR
|     - add forgotten typemap in Hierarchical
|     - add semicolon on make install for octave-modular
|     - add the same examples we have for python-modular to octave-modular: there
|     seems to be still a bug leading to infinity recursions for virtual functions in
|     the octave swig wrapper ... to be debugged
| 
| A	octave-modular/examples/all_classifier.m
| A	octave-modular/examples/all_clustering.m
| A	octave-modular/examples/all_distance.m
| A	octave-modular/examples/all_distribution.m
| A	octave-modular/examples/all_kernels.m
| A	octave-modular/examples/all_preproc.m
| A	octave-modular/examples/all_regression.m
| M	octave-modular/examples/libsvm.m
| M	src/Makefile
| M	src/clustering/Hierarchical.i
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/regression/KRR.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit fa0b38a56ee80196434a31f3c5e1fced5f3f6a86
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 12:06:35 2008 +0000
| 
|     fix a couple of compile warnings on 64bit arch
| 
| M	src/features/SparseFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
|  
* commit 031dd56611d47f29b2887d282e7ed0da649df3aa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 11:43:41 2008 +0000
| 
|     - compile fix
|     - fix crasher due to united variable in wordfeatures
|     - adjust python examples/testsuite to match new syntax
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/util.py
| M	src/features/ShortRealFeatures.h
| M	src/features/WordFeatures.h
|  
* commit e5d518b7e0055b826d9660408a4da4fcc27e811e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 11:05:51 2008 +0000
| 
|     * get rid of most %pythoncode extensions, which brings the following
|      incompatible changes:
|     	- Byte/Char features have to be created like stringfeatures, i.e.
|     		bf=ByteFeatures(alphabet)
|     		bf.copy_feature_matrix(array(...))
|     * only the convenience function for SVM remains (for the python interface), in
|       case we later do some define magic we might do
|     	a) magic multi argument typemaps, e.g. ByteFeatures(alphabet, feat)
|         b) functions with multiple numpy arrays... e.g. SVM(svs, alphas, b)
|     		with CSVM(INT* svs, INT num_svs, DREAL* alphas, INT num_alpha, DREAL b)
| 
| M	src/classifier/svm/SVM.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.h
| M	src/features/IntFeatures.i
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.h
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit 17198c12a48e74f9ccb3cbe665c3531dffd49f9b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 10:30:46 2008 +0000
| 
|     - resolved conflict, for multiple same name (but with different type) functions
|     - we won't need the elstupido %pythoncode class derivation stuff :-)
| 
| M	src/features/Labels.i
| M	src/lib/octave_typemaps.i
| M	src/lib/python_typemaps.i
| M	src/lib/r_typemaps.i
|  
* commit d334c4fee6b920844cad8d85c536b3c1f06d657d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 16 05:39:02 2008 +0000
| 
|     for the weighted spectrum kernel reverse must be True
| 
| M	python-modular/examples/all_kernels.py
|  
* commit 339f4e10977cdafa08287bbd48b6516bcc382f88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 12:38:48 2008 +0000
| 
|     - wrap all typemaps in lib/swig_typemaps.i (that include python_typemaps.i etc...)
|     - only ever use include lib/r.h when including R files
|     - R does not need a prefix for .so files, e.g. Kernel.R and Kernel.so is the swig output
|     - add python swig support (including typemaps for i/o of vectors and matrices),
|     	while it should fully work it does not, guessing:
|     
|     	a) debian's R 2.7-prerelease is too new
|     	b) swig R wrapper support is far from mature
|     	c) subtleties of the R swig/interface or R even, e.g. the test works via R < ../R-modular/examples/first_shot.R
|     	but crashes when pasted in interactive mode. as long as the R swig
|     	maintainer does not respond this has 0 chance to improve in the future.
| 
| A	R-modular/examples/first_shot.R
| A	README
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/clustering/KMeans.i
| M	src/configure
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/interface/RInterface.cpp
| M	src/kernel/CustomKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.i
| D	src/lib/R.h
| M	src/lib/Signal.cpp
| M	src/lib/io.cpp
| M	src/lib/matlab.h
| M	src/lib/octave.h
| M	src/lib/python.h
| A	src/lib/r.h
| A	src/lib/r_typemaps.i
| A	src/lib/swig_typemaps.i
| M	src/structure/Structure.i
|  
* commit 1cf8f9bc2969c99320e23083499a091f53070499
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 09:29:01 2008 +0000
| 
|     - add make install for octave-modular
|     - fix typo in usage help
|     - update todo list
| 
| M	src/Makefile
| M	src/TODO
| M	src/interface/SGInterface.cpp
|  
* commit 695170ccf1524009e6e9f4ab0e228bd67165aa53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 07:54:11 2008 +0000
| 
|     fix another compile warning
| 
| M	src/lib/Mathematics.h
|  
* commit 86c4ef32fb9016082edaadf35dc6687880139b28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 15 07:36:33 2008 +0000
| 
|     - fix a large number of gcc4.3 compile warnings
|     - add missing documentation
|     - add copyright header to octave_typemaps.i
| 
| M	doc/Doxyfile
| M	doc/pages/Installation.mainpage
| M	doc/pages/Screenshots.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| M	src/features/Alphabet.cpp
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/PyramidChi2.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/octave_typemaps.i
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 157a9c4e0b5b0552f2b6409d8ccc800a62da5264
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 10:54:13 2008 +0000
| 
|     add an example to show how thinks work w/ octave-modular
| 
| A	octave-modular/examples/libsvm.m
|  
* commit 864c71f62c75d117ef6bcb7d67619007a4a41b4e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 10:11:32 2008 +0000
| 
|     force variable to be in the outer context for IN1/IN2 octave typemaps. they
|     might have been deallocated (as they were local variables) before.
| 
| M	src/lib/octave_typemaps.i
|  
* commit 13a8f758be58ef1557be8ec0c9083022b1e80f1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 07:10:47 2008 +0000
| 
|     - bugfix in R package building
|     - add a make update-webpage to simplify the release mechanism
| 
| M	Makefile
| M	src/ChangeLog
|  
* commit d82ac7aa4779b200cca55242a953bcb704d6eb53
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 14 05:25:46 2008 +0000
| 
|     - add forgotten includes for python_typemap and variable renaming
|     - use ref counting for octave interface too
|     - ignore all further constructors when creating Labels(lab), this seems to please typemaps (as in they are now applied)
| 
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/clustering/KMeans.i
| M	src/features/Labels.i
| M	src/kernel/Kernel.i
|  
* commit b6366a47c8e0a6deed82a2a7c517c6a9c4c296ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 21:24:57 2008 +0000
| 
|     increadibly, swig for octave is basically working for everything, vectors,
|     matrices and strings (in and out...)... thanks to the swig team and
|     especially Xavier Delacour for the help... needs swig from svn to work
| 
| M	src/NEWS
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/evaluation/Evaluation.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/IntFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.i
| A	src/lib/octave_typemaps.i
| M	src/lib/python.h
| M	src/lib/python_typemaps.i
| M	src/structure/Structure.i
|  
* commit 981c8ee51b65d1d47f3906f173bbff3a9b54d409
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 13 16:39:33 2008 +0000
| 
|     interface:
|     - Updated help command to give the user a hint how to invoke help for a single
|       command.
| 
| M	src/interface/SGInterface.cpp
|  
* commit 244ea12c9570dae8d434ebae47bd65f8db958c87
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 11:29:50 2008 +0000
| 
|     get rid of the R/sg/src directory in release archives
| 
| M	Makefile
|  
* commit c878d33cf9905428e6fdee3d4c136b09d706ef7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 13 10:04:06 2008 +0000
| 
|     fixed a few doxygen documentation warnings
| 
| M	src/clustering/KMeans.h
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.h
|  
* commit 151605f2ec5772ccb62a9bb1763d782eee22e399
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:41:31 2008 +0000
| 
|     add missing files to docu, fix **
| 
| A	doc/pages/Authors.mainpage
| A	doc/pages/FAQ.mainpage
| A	doc/pages/Interfaces.mainpage
| A	doc/pages/Methods.mainpage
| A	doc/pages/ModularInterfaces.mainpage
| A	doc/pages/Screenshots.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| A	doc/pages/authors
|  
* commit 7d599a74cd8c5a722c34f7f153674ccd7b125c69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:05:26 2008 +0000
| 
|     Preparing for new Release shogun_0.6.0
| 
| M	doc/Doxyfile
|  
* commit 9d2619a3d4ed17a428ceece12b7a82482146502f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:05:21 2008 +0000
| 
|     doxygen updates
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 88fba376e22b86fdaf6a3cd733b0aed450aa06d3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 23:01:21 2008 +0000
| 
|     - lots more of documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/License.mainpage
| M	doc/pages/StaticInterfaces.mainpage
| M	matlab_and_octave/examples/graphical/svm_classification.m
| A	src/COPYRIGHT
| M	src/LICENSE
| M	src/LICENSE.SVMlight
| M	src/NEWS
|  
* commit 7292209f65358368957892e3c96e44602541bf08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Apr 12 22:27:49 2008 +0000
| 
|     interface:
|     - Little bugfix to usage string of set_features and proper delete[] in a_help.
|     - Reshuffling of methods to have them grouped properly.
|     - Added many commands which merely call send_command for the time being.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d75c4db58c08bb84fc9afc727e01b898bc343f47
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Apr 12 20:08:52 2008 +0000
| 
|     interface:
|     - Removed superflous command test.
|     - Improved help function.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 9dce6075bb0d32fa4b84d23e8ff956c69a4c2c33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 18:20:32 2008 +0000
| 
|     updated docu
| 
| A	R/sg/inst/doc/sg.Rnw
| M	doc/Doxyfile
| M	doc/pages/StaticInterfaces.mainpage
|  
* commit cbcc481c9dd21cca9cb32b01830c5f740f4a4b07
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 14:11:12 2008 +0000
| 
|     - remove vignette and include documentation in doxygen
|     - get swig-octave to work for Kernels.
| 
| D	R/sg/inst/doc/sg.Rnw
| M	doc/pages/StaticInterfaces.mainpage
| M	src/kernel/Kernel.i
|  
* commit 288d6fd1b350b5775f48705f26c27e374c8532ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 11:26:49 2008 +0000
| 
|     add yaroslav to authors, minimal documentation
| 
| M	doc/Doxyfile
| M	doc/pages/Documentation.mainpage
| M	doc/pages/Installation.mainpage
| M	doc/pages/License.mainpage
| D	doc/pages/Makefile
| M	doc/pages/StaticInterfaces.mainpage
| M	doc/pages/Tutorial.mainpage
| M	doc/pages/shogun_footer.html
| M	src/.authors
|  
* commit a7887988624f10a48f3c351aac577a372a8c7c43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:41:40 2008 +0000
| 
|     - svn put tests into tests/ directory
|     - move/merge documenation form .txt files to doxygen
|     - update README and fix doc generation
| 
| M	doc/Doxyfile
| A	doc/README
| D	doc/README.deps
| A	doc/pages/Documentation.mainpage
| A	doc/pages/Installation.mainpage
| A	doc/pages/License.mainpage
| D	doc/pages/R.txt
| A	doc/pages/StaticInterfaces.mainpage
| A	doc/pages/Tutorial.mainpage
| D	doc/pages/cmdline.txt
| D	doc/pages/commands.txt
| D	doc/pages/faq.txt
| D	doc/pages/installation.txt
| D	doc/pages/interfaces.txt
| D	doc/pages/introduction.txt
| D	doc/pages/license.txt
| D	doc/pages/matlab.txt
| D	doc/pages/octave.txt
| D	doc/pages/overview.txt
| D	doc/pages/python.txt
| A	doc/pages/shogun_footer.html
| D	doc/shogun_footer.html
| D	matlab_and_octave/examples/test_classifier.m
| D	matlab_and_octave/examples/test_combined.m
| D	matlab_and_octave/examples/test_combined2.m
| D	matlab_and_octave/examples/test_complex_scenario.m
| D	matlab_and_octave/examples/test_custom_kernel.m
| D	matlab_and_octave/examples/test_interface.m
| D	matlab_and_octave/examples/test_kernel_optimization.m
| D	matlab_and_octave/examples/test_knn.m
| D	matlab_and_octave/examples/test_l2svm.m
| D	matlab_and_octave/examples/test_linadd.m
| D	matlab_and_octave/examples/test_linear_methods.m
| D	matlab_and_octave/examples/test_mkl.m
| D	matlab_and_octave/examples/test_mkl_svr.m
| D	matlab_and_octave/examples/test_mkl_svr_wrapper.m
| D	matlab_and_octave/examples/test_ocas_normalization.m
| D	matlab_and_octave/examples/test_one_class_svm.m
| D	matlab_and_octave/examples/test_regression_linadd.m
| D	matlab_and_octave/examples/test_sliding_window.m
| D	matlab_and_octave/examples/test_sparse.m
| D	matlab_and_octave/examples/test_sparse_methods.m
| D	matlab_and_octave/examples/test_spec_consensus.m
| D	matlab_and_octave/examples/test_subgradsvm.m
| D	matlab_and_octave/examples/test_svmlight_libsvm.m
| D	matlab_and_octave/examples/test_svrlight_libsvr.m
| D	matlab_and_octave/examples/test_wd_kernel.m
| D	matlab_and_octave/examples/test_wd_linadd.m
| D	matlab_and_octave/examples/test_wdocas.m
| D	matlab_and_octave/examples/test_wds_consensus.m
| D	matlab_and_octave/examples/test_wds_kernel.m
| D	matlab_and_octave/examples/test_wdshift_position_weights.m
| D	matlab_and_octave/examples/test_weighted_spectrum.m
| A	matlab_and_octave/examples/tests/test_classifier.m
| A	matlab_and_octave/examples/tests/test_combined.m
| A	matlab_and_octave/examples/tests/test_combined2.m
| A	matlab_and_octave/examples/tests/test_complex_scenario.m
| A	matlab_and_octave/examples/tests/test_custom_kernel.m
| A	matlab_and_octave/examples/tests/test_interface.m
| A	matlab_and_octave/examples/tests/test_kernel_optimization.m
| A	matlab_and_octave/examples/tests/test_knn.m
| A	matlab_and_octave/examples/tests/test_l2svm.m
| A	matlab_and_octave/examples/tests/test_linadd.m
| A	matlab_and_octave/examples/tests/test_linear_methods.m
| A	matlab_and_octave/examples/tests/test_mkl.m
| A	matlab_and_octave/examples/tests/test_mkl_svr.m
| A	matlab_and_octave/examples/tests/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/tests/test_ocas_normalization.m
| A	matlab_and_octave/examples/tests/test_one_class_svm.m
| A	matlab_and_octave/examples/tests/test_regression_linadd.m
| A	matlab_and_octave/examples/tests/test_sliding_window.m
| A	matlab_and_octave/examples/tests/test_sparse.m
| A	matlab_and_octave/examples/tests/test_sparse_methods.m
| A	matlab_and_octave/examples/tests/test_spec_consensus.m
| A	matlab_and_octave/examples/tests/test_subgradsvm.m
| A	matlab_and_octave/examples/tests/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/tests/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/tests/test_wd_kernel.m
| A	matlab_and_octave/examples/tests/test_wd_linadd.m
| A	matlab_and_octave/examples/tests/test_wdocas.m
| A	matlab_and_octave/examples/tests/test_wds_consensus.m
| A	matlab_and_octave/examples/tests/test_wds_kernel.m
| A	matlab_and_octave/examples/tests/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/tests/test_weighted_spectrum.m
| M	src/Makefile
| D	src/base/Documentation.mainpage
| M	src/classifier/svm/SVM.h
| M	src/kernel/KernelMachine.h
|  
* commit f00ca08ca174a036b24a9874b83689abfe628550
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:30:50 2008 +0000
| 
|     doc moving
| 
| A	doc/Doxyfile
| M	doc/Makefile
| M	doc/README.deps
| D	doc/doxygen/Doxyfile
| D	doc/doxygen/MatlabDemo.png
| D	doc/doxygen/OctaveDemo.png
| D	doc/doxygen/PythonDemo.png
| D	doc/doxygen/RDemo.png
| D	doc/doxygen/footer.dpp
| D	doc/doxygen/shogun_footer.html
| D	doc/doxygen/shogun_logo.png
| A	doc/footer.dpp
| A	doc/images/MatlabDemo.png
| A	doc/images/OctaveDemo.png
| A	doc/images/PythonDemo.png
| A	doc/images/RDemo.png
| A	doc/images/shogun_logo.png
| D	doc/manual/Makefile
| D	doc/manual/R.txt
| D	doc/manual/cmdline.txt
| D	doc/manual/commands.txt
| D	doc/manual/faq.txt
| D	doc/manual/installation.txt
| D	doc/manual/interfaces.txt
| D	doc/manual/introduction.txt
| D	doc/manual/license.txt
| D	doc/manual/matlab.txt
| D	doc/manual/octave.txt
| D	doc/manual/overview.txt
| D	doc/manual/python.txt
| A	doc/pages/Makefile
| A	doc/pages/R.txt
| A	doc/pages/cmdline.txt
| A	doc/pages/commands.txt
| A	doc/pages/faq.txt
| A	doc/pages/installation.txt
| A	doc/pages/interfaces.txt
| A	doc/pages/introduction.txt
| A	doc/pages/license.txt
| A	doc/pages/matlab.txt
| A	doc/pages/octave.txt
| A	doc/pages/overview.txt
| A	doc/pages/python.txt
| A	doc/shogun_footer.html
|  
* commit f25dc143d20667d2496965ac25cd3d58a8f6fe1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Apr 12 09:21:02 2008 +0000
| 
|     start moving documentation to doc/
| 
| M	doc/doxygen/Doxyfile
| D	doc/pseudocode/poim.txt
|  
* commit f4609196150e732bd828b44209e673c8a7ea125a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 19:05:46 2008 +0000
| 
|     rename plots -> graphical
| 
| A	R/examples/graphical/hmm.R
| A	R/examples/graphical/svm_classification.R
| A	R/examples/graphical/svr_regression.R
| D	R/examples/plots/hmm.R
| D	R/examples/plots/svm_classification.R
| D	R/examples/plots/svr_regression.R
| A	matlab_and_octave/examples/graphical/cluster_hierarchical.m
| A	matlab_and_octave/examples/graphical/cluster_kmeans.m
| A	matlab_and_octave/examples/graphical/entropy.m
| A	matlab_and_octave/examples/graphical/hmm.m
| A	matlab_and_octave/examples/graphical/lda_classification.m
| A	matlab_and_octave/examples/graphical/local_alignment_kernel.m
| A	matlab_and_octave/examples/graphical/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/graphical/spec_interp.m
| A	matlab_and_octave/examples/graphical/svm_classification.m
| A	matlab_and_octave/examples/graphical/svm_multiclass.m
| A	matlab_and_octave/examples/graphical/svr_regression.m
| A	matlab_and_octave/examples/graphical/test_gnpp_svm.m
| A	matlab_and_octave/examples/graphical/test_poim_wds.m
| A	matlab_and_octave/examples/graphical/test_regression.m
| A	matlab_and_octave/examples/graphical/test_regression_mkl.m
| A	matlab_and_octave/examples/graphical/test_spec_interp.m
| A	matlab_and_octave/examples/graphical/test_svm_multiclass.m
| A	matlab_and_octave/examples/graphical/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/graphical/wds_consensus.m
| A	matlab_and_octave/examples/graphical/wds_shift_interp.m
| D	matlab_and_octave/examples/plots/cluster_hierarchical.m
| D	matlab_and_octave/examples/plots/cluster_kmeans.m
| D	matlab_and_octave/examples/plots/entropy.m
| D	matlab_and_octave/examples/plots/hmm.m
| D	matlab_and_octave/examples/plots/lda_classification.m
| D	matlab_and_octave/examples/plots/local_alignment_kernel.m
| D	matlab_and_octave/examples/plots/mkl_pseudo_dna.m
| D	matlab_and_octave/examples/plots/spec_interp.m
| D	matlab_and_octave/examples/plots/svm_classification.m
| D	matlab_and_octave/examples/plots/svm_multiclass.m
| D	matlab_and_octave/examples/plots/svr_regression.m
| D	matlab_and_octave/examples/plots/test_gnpp_svm.m
| D	matlab_and_octave/examples/plots/test_poim_wds.m
| D	matlab_and_octave/examples/plots/test_regression.m
| D	matlab_and_octave/examples/plots/test_regression_mkl.m
| D	matlab_and_octave/examples/plots/test_spec_interp.m
| D	matlab_and_octave/examples/plots/test_svm_multiclass.m
| D	matlab_and_octave/examples/plots/test_wd_wds_parallel.m
| D	matlab_and_octave/examples/plots/wds_consensus.m
| D	matlab_and_octave/examples/plots/wds_shift_interp.m
| A	python-modular/examples/graphical/all_evaluation.py
| A	python-modular/examples/graphical/multiple_smvs.py
| A	python-modular/examples/graphical/numpy_krr.py
| A	python-modular/examples/graphical/numpy_krr_sinc.py
| A	python-modular/examples/graphical/numpy_lda.py
| A	python-modular/examples/graphical/numpy_svm.py
| A	python-modular/examples/graphical/numpy_svmlin.py
| A	python-modular/examples/graphical/numpy_svr_sinc.py
| A	python-modular/examples/graphical/util.py
| D	python-modular/examples/plots/all_evaluation.py
| D	python-modular/examples/plots/multiple_smvs.py
| D	python-modular/examples/plots/numpy_krr.py
| D	python-modular/examples/plots/numpy_krr_sinc.py
| D	python-modular/examples/plots/numpy_lda.py
| D	python-modular/examples/plots/numpy_svm.py
| D	python-modular/examples/plots/numpy_svmlin.py
| D	python-modular/examples/plots/numpy_svr_sinc.py
| D	python-modular/examples/plots/util.py
| A	python/examples/graphical/svm_classificaton.py
| A	python/examples/graphical/svr_regression.py
| D	python/examples/plots/svm_classificaton.py
| D	python/examples/plots/svr_regression.py
|  
* commit c1f5cc87a57dd1825f434aaa24f5b3783cd490be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 09:33:04 2008 +0000
| 
|     fix the hmm viterbi path: it returns a WORD not real-vector: using
|     set_word_vector is the fix. as R does not support WORD add some fuzzing (return ints for WORD, DREAL for shortreal etc...)
| 
| M	matlab_and_octave/examples/plots/hmm.m
| M	python-modular/testcases/test_all.sh
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 2c5a3753b1a0a05456d62ecbc03a4b262fdfd892
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 11 05:09:06 2008 +0000
| 
|     octave-modular compile support
| 
| M	src/.generate_link_dependencies.py
| M	src/.scrub_docstrings.py
| M	src/Makefile
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/classifier/KNN.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/configure
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/Signal.cpp
|  
* commit 35144439066b7508c60fdc11e1997e158e39866c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 12:26:30 2008 +0000
| 
|     interface:
|     - Possibly fixed HMM issue.
|     - Forgot to add R toy examples previously.
| 
| A	R/examples/all_classifier.R
| A	R/examples/all_clustering.R
| A	R/examples/all_distance.R
| A	R/examples/all_distribution.R
| A	R/examples/all_kernels.R
| A	R/examples/all_preproc.R
| A	R/examples/all_regression.R
| M	matlab_and_octave/examples/all_distribution.m
| M	python/examples/all_distribution.py
| M	src/interface/SGInterface.cpp
|  
* commit da0f9935307462150d1f045e977790f1c3d2cb1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 12:05:50 2008 +0000
| 
|     interface:
|     - Fixed a memory access issue, all interfaces with each all_* example file are
|       valgrind-clear. HMM segfault issue is pending.
| 
| M	matlab_and_octave/examples/all_classifier.m
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 686fa84b89922047346a8a3adc6ba9089de3126c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 10 10:20:45 2008 +0000
| 
|     HMM/interface:
|     - Mucked around with a bug in HMM, only did some cosmetic fixes. Maybe
|       CHMM::model_probability_comp must be changed? dunno how.
| 
| M	matlab_and_octave/examples/all_distribution.m
| M	src/distributions/hmm/HMM.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 128061798d71a63522d13f28039943872dad71cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 10 10:04:17 2008 +0000
| 
|     add jochens fixes to properly detect acml and intel mkl
| 
| M	src/configure
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit 8a95ca970b36db505205263e1e93941e11d790c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 10 09:51:19 2008 +0000
| 
|     -don't ever directly include <cblas.h> but use lib/lapack.h instead
|     -remove <cblas.h> from many files that just don't need it
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
| M	src/preproc/PCACut.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit b2c980ebd6aababcbe86b83b9eaa4a7a2d8a95aa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 9 17:10:55 2008 +0000
| 
|     interface:
|     - Added toy examples for R interface and moved plotting examples into plots/.
|     - Mostly cosmetic fixed to other interfaces.
| 
| D	R/examples/hmm.R
| A	R/examples/plots/hmm.R
| A	R/examples/plots/svm_classification.R
| A	R/examples/plots/svr_regression.R
| D	R/examples/svm_classification.R
| D	R/examples/svr_regression.R
| M	matlab_and_octave/examples/all_distance.m
| M	python/examples/all_distance.py
| M	python/examples/all_regression.py
| M	src/interface/RInterface.cpp
|  
* commit b2d404b51049e10d828df5ffb2b7cb3a4f5c225b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 9 07:57:34 2008 +0000
| 
|     convert tron to use cblas
| 
| M	src/classifier/svm/Tron.cpp
| M	src/configure
|  
* commit eade50ab4762595ee0d0a17626e5b42e1372d700
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 18:32:45 2008 +0000
| 
|     fix definition of dpotrf_
| 
| M	src/configure
|  
* commit 055a033864c532083a372ecde264ec7208a3212f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 18:18:15 2008 +0000
| 
|     link with cblas in case of atlas
| 
| M	src/configure
|  
* commit 627f00825943f29514717c6aee1d36602263026e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 17:52:47 2008 +0000
| 
|     Use --dis/enable-lapack again: the HAVE_LAPACK switch is on if blas and any
|     of ACML, MKL, ATLAS or vanilla LAPACK are found (each of which implement the
|     lapack standard). In configure detect if we have one of the many and as we use
|     clapack in case of atlas fall back to Jochen's wrappers if atlas is not available.
|     
|     Tested with lapack and atlas, still needs testing for MKL and ACML (which I don't have)
| 
| M	src/configure
|  
* commit 64a7b7a98badcbb630db93581cc87de6e50290bd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 14:48:01 2008 +0000
| 
|     interface:
|     - Added toy examples to matlab/octave interface.
|     - Moved plotting matlab/octave examples into subdirectory plots/.
| 
| A	matlab_and_octave/examples/all_classifier.m
| A	matlab_and_octave/examples/all_clustering.m
| A	matlab_and_octave/examples/all_distance.m
| A	matlab_and_octave/examples/all_distribution.m
| A	matlab_and_octave/examples/all_kernels.m
| A	matlab_and_octave/examples/all_preproc.m
| A	matlab_and_octave/examples/all_regression.m
| D	matlab_and_octave/examples/cluster_hierarchical.m
| D	matlab_and_octave/examples/cluster_kmeans.m
| D	matlab_and_octave/examples/entropy.m
| D	matlab_and_octave/examples/hmm.m
| D	matlab_and_octave/examples/lda_classification.m
| D	matlab_and_octave/examples/local_alignment_kernel.m
| D	matlab_and_octave/examples/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/plots/cluster_hierarchical.m
| A	matlab_and_octave/examples/plots/cluster_kmeans.m
| A	matlab_and_octave/examples/plots/entropy.m
| A	matlab_and_octave/examples/plots/hmm.m
| A	matlab_and_octave/examples/plots/lda_classification.m
| A	matlab_and_octave/examples/plots/local_alignment_kernel.m
| A	matlab_and_octave/examples/plots/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/plots/spec_interp.m
| A	matlab_and_octave/examples/plots/svm_classification.m
| A	matlab_and_octave/examples/plots/svm_multiclass.m
| A	matlab_and_octave/examples/plots/svr_regression.m
| A	matlab_and_octave/examples/plots/test_gnpp_svm.m
| A	matlab_and_octave/examples/plots/test_poim_wds.m
| A	matlab_and_octave/examples/plots/test_regression.m
| A	matlab_and_octave/examples/plots/test_regression_mkl.m
| A	matlab_and_octave/examples/plots/test_spec_interp.m
| A	matlab_and_octave/examples/plots/test_svm_multiclass.m
| A	matlab_and_octave/examples/plots/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/plots/wds_consensus.m
| A	matlab_and_octave/examples/plots/wds_shift_interp.m
| D	matlab_and_octave/examples/spec_interp.m
| D	matlab_and_octave/examples/svm_classification.m
| D	matlab_and_octave/examples/svm_multiclass.m
| D	matlab_and_octave/examples/svr_regression.m
| D	matlab_and_octave/examples/test_gnpp_svm.m
| D	matlab_and_octave/examples/test_poim_wds.m
| D	matlab_and_octave/examples/test_regression.m
| D	matlab_and_octave/examples/test_regression_mkl.m
| D	matlab_and_octave/examples/test_spec_interp.m
| D	matlab_and_octave/examples/test_svm_multiclass.m
| D	matlab_and_octave/examples/test_wd_wds_parallel.m
| D	matlab_and_octave/examples/wds_consensus.m
| D	matlab_and_octave/examples/wds_shift_interp.m
|  
* commit 870010e7a8cbc5af25c209225a34fbdb545e2abe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 14:43:09 2008 +0000
| 
|     interface:
|     - Mostly cosmetic fixes to toy examples.
|     - Made regressions work.
| 
| M	python/examples/all_classifier.py
| M	python/examples/all_distance.py
| M	python/examples/all_distribution.py
| M	python/examples/all_kernels.py
| M	python/examples/all_preproc.py
| M	python/examples/all_regression.py
|  
* commit a327275c8cbad91766277925a4d0e3736e70b977
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 13:16:23 2008 +0000
| 
|     update NEWS
| 
| M	src/NEWS
|  
* commit 650d270f631680abc6d82c084ce18f55dbc09f0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 13:02:59 2008 +0000
| 
|     - fix compile warning (NULL vs. 0) mismatch
|     - require octave version 3.0
| 
| M	src/classifier/PluginEstimate.cpp
| M	src/configure
|  
* commit 7fb8afdb6374737d58957fe0898fcd6343548146
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 12:54:48 2008 +0000
| 
|     compile fix for matlab 6.5 (logical does not exist there...)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/lib/matlab.h
|  
* commit 99d1a2b3f9c013923a9c099ae07180ff3b772404
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 12:23:29 2008 +0000
| 
|     fix single kernel SVM-light
| 
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a0aba0a006e193954efd2b89baa1b5e871175eb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 11:30:06 2008 +0000
| 
|     attempt to fix building w/ atlas
| 
| M	src/lib/Mathematics.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit f6ab471325d75ceb972caa114bf9482cafe0fa9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 8 11:00:56 2008 +0000
| 
|     Add ACML and MKL support based on the patches from Jochen Garcke - thanks!
| 
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
| M	src/regression/KRR.cpp
|  
* commit 677a73bd21a09298b1e5012a04243476521416a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 8 10:32:20 2008 +0000
| 
|     interface:
|     - Fix double free corruption in SGInterface::a_get_classifier.
|     - Fix python examples for clustering.
| 
| M	python/examples/all_clustering.py
| M	src/interface/SGInterface.cpp
|  
* commit e410915c83b23a2e367e74eb3dcfd7fd86b8955a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 7 21:48:09 2008 +0000
| 
|     add a get_w / set_w to linear kernel
| 
| M	src/classifier/LinearClassifier.i
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
|  
* commit c3c6e6f80835ae80023177dd6d821e2fcb9061af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 7 15:20:41 2008 +0000
| 
|     interface:
|     - Renamed graphical examples for python-modular to plots and moved one example
|       file into that directory.
| 
| D	python-modular/examples/all_evaluation.py
| D	python-modular/examples/matplotlib/multiple_smvs.py
| D	python-modular/examples/matplotlib/numpy_krr.py
| D	python-modular/examples/matplotlib/numpy_krr_sinc.py
| D	python-modular/examples/matplotlib/numpy_lda.py
| D	python-modular/examples/matplotlib/numpy_svm.py
| D	python-modular/examples/matplotlib/numpy_svmlin.py
| D	python-modular/examples/matplotlib/numpy_svr_sinc.py
| D	python-modular/examples/matplotlib/util.py
| A	python-modular/examples/plots/all_evaluation.py
| A	python-modular/examples/plots/multiple_smvs.py
| A	python-modular/examples/plots/numpy_krr.py
| A	python-modular/examples/plots/numpy_krr_sinc.py
| A	python-modular/examples/plots/numpy_lda.py
| A	python-modular/examples/plots/numpy_svm.py
| A	python-modular/examples/plots/numpy_svmlin.py
| A	python-modular/examples/plots/numpy_svr_sinc.py
| A	python-modular/examples/plots/util.py
|  
* commit c829ae8a69e634a8989bd6b4136106c8d852e85c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Apr 7 15:18:39 2008 +0000
| 
|     interface:
|     - Added examples for Python interface.
|     - Fixed typo in GUIDistance.
|     - Made error message in GUIKernel more useful.
|     - Fixed bug in SGInterface.
| 
| A	python/examples/all_classifier.py
| A	python/examples/all_clustering.py
| A	python/examples/all_distance.py
| A	python/examples/all_distribution.py
| A	python/examples/all_kernels.py
| A	python/examples/all_preproc.py
| A	python/examples/all_regression.py
| D	python/examples/hmm.py
| A	python/examples/plots/svm_classificaton.py
| A	python/examples/plots/svr_regression.py
| D	python/examples/svm_classificaton.py
| D	python/examples/svr_regression.py
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 6241697d9daeb3c74c7f923880911fa2c21410d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 6 11:29:52 2008 +0000
| 
|     interface:
|     - Implemented set_int/real/bool for all 4 interfaces.
| 
| M	R/examples/svm_classification.R
| M	matlab_and_octave/examples/svm_classification.m
| M	python/examples/svm_classificaton.py
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d4272c27c5db44dfddd6d95ab8b0bbab670536b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 11:05:01 2008 +0000
| 
|     - fix hmm example
|     - fix several naming conflicts (e.g. result is used by swig for return arguments)
|     - get modular R interface to at least compile
| 
| M	matlab_and_octave/examples/hmm.m
| M	src/.scrub_docstrings.py
| M	src/Makefile
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
| M	src/configure
| M	src/features/Features.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/DynamicArray.h
| M	src/sg.m
|  
* commit 86afc35c668c7443b2952e33e035a519cab18ddc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Apr 6 09:55:03 2008 +0000
| 
|     interface:
|     - Replaced set/get_*_matrix by set/get_*_vector where appropriate.
|     - Fixed octave-incompatible example.
| 
| M	matlab_and_octave/examples/hmm.m
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 501ba0976f8c19d13ecbd8d7b7cc73469f6d4e30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 07:56:07 2008 +0000
| 
|     - delete remainders of old interfaces and minor compile and cosmetic fixes
|     - update TODO
| 
| M	src/TODO
| M	src/gui/GUI.h
| D	src/gui/Python.h
| M	src/gui/TextGUI.h
| D	src/guilib/GUIMatlab.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/lib/R.h
| M	src/lib/Signal.cpp
| M	src/lib/io.cpp
|  
* commit 3c846da4d2cfa5aadc5b116a5dd9360e6648bac8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 6 07:06:18 2008 +0000
| 
|     - add signal handling for octave
|     - attempt to get signal handling for R/python to work - it may not - we should
|     use a different (cleaner) mechanism anyway: set a flag when ctrl-c occured, in
|     long loops check that flag every now and then and then return
|     - put extension includes in lib/{R,octave,python,matlab}.h
|     - remove old (and now obsolete) interface files
| 
| M	src/classifier/svm/SVM_light.cpp
| D	src/gui/Matlab.cpp
| D	src/gui/Octave.cpp
| D	src/gui/Python.cpp
| D	src/gui/R.cpp
| D	src/guilib/GUIMatlab.h
| D	src/guilib/GUIOctave.cpp
| D	src/guilib/GUIOctave.h
| D	src/guilib/GUIPython.cpp
| D	src/guilib/GUIPython.h
| D	src/guilib/GUIR.cpp
| D	src/guilib/GUIR.h
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/RInterface.cpp
| A	src/lib/R.h
| M	src/lib/Signal.cpp
| A	src/lib/octave.h
|  
* commit 1aa0237e0a5fc09ac27502d069a442e3a893e3bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 17:18:30 2008 +0000
| 
|     mostly fixed static python interface (set/get features etc)
|     fixed examples
| 
| A	python/examples/hmm.py
| M	python/examples/svm_classificaton.py
| M	python/examples/test_mkl.py
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 4db2d14b49ebec7e207dc9bee8ff439ac2437e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 13:36:01 2008 +0000
| 
|     rename matlab dir to matlab_and_octave to reflect that the examples will run in both languages
| 
| D	matlab/examples/cluster_hierarchical.m
| D	matlab/examples/cluster_kmeans.m
| D	matlab/examples/entropy.m
| D	matlab/examples/hmm.m
| D	matlab/examples/lda_classification.m
| D	matlab/examples/liblinear.m
| D	matlab/examples/lik_kernel.m
| D	matlab/examples/local_alignment_kernel.m
| D	matlab/examples/lpboost.m
| D	matlab/examples/lpm.m
| D	matlab/examples/markov_chain.m
| D	matlab/examples/mkl_classify_christmas_star.m
| D	matlab/examples/mkl_pseudo_dna.m
| D	matlab/examples/mkl_regression_3sine_waves.m
| D	matlab/examples/mkl_regression_sine.m
| D	matlab/examples/spec_interp.m
| D	matlab/examples/spec_kernel.m
| D	matlab/examples/string_features.m
| D	matlab/examples/stringfeatures.m
| D	matlab/examples/svm_classification.m
| D	matlab/examples/svm_multiclass.m
| D	matlab/examples/svmocas.m
| D	matlab/examples/svmsgd.m
| D	matlab/examples/svr_regression.m
| D	matlab/examples/test_classifier.m
| D	matlab/examples/test_combined.m
| D	matlab/examples/test_combined2.m
| D	matlab/examples/test_complex_scenario.m
| D	matlab/examples/test_custom_kernel.m
| D	matlab/examples/test_gnpp_svm.m
| D	matlab/examples/test_interface.m
| D	matlab/examples/test_kernel_optimization.m
| D	matlab/examples/test_knn.m
| D	matlab/examples/test_l2svm.m
| D	matlab/examples/test_linadd.m
| D	matlab/examples/test_linear_methods.m
| D	matlab/examples/test_mkl.m
| D	matlab/examples/test_mkl_svr.m
| D	matlab/examples/test_mkl_svr_wrapper.m
| D	matlab/examples/test_ocas_normalization.m
| D	matlab/examples/test_one_class_svm.m
| D	matlab/examples/test_poim_wds.m
| D	matlab/examples/test_regression.m
| D	matlab/examples/test_regression_linadd.m
| D	matlab/examples/test_regression_mkl.m
| D	matlab/examples/test_sliding_window.m
| D	matlab/examples/test_sparse.m
| D	matlab/examples/test_sparse_methods.m
| D	matlab/examples/test_spec_consensus.m
| D	matlab/examples/test_spec_interp.m
| D	matlab/examples/test_subgradsvm.m
| D	matlab/examples/test_svm_multiclass.m
| D	matlab/examples/test_svmlight_libsvm.m
| D	matlab/examples/test_svrlight_libsvr.m
| D	matlab/examples/test_wd_kernel.m
| D	matlab/examples/test_wd_linadd.m
| D	matlab/examples/test_wd_wds_parallel.m
| D	matlab/examples/test_wdocas.m
| D	matlab/examples/test_wds_consensus.m
| D	matlab/examples/test_wds_kernel.m
| D	matlab/examples/test_wdshift_position_weights.m
| D	matlab/examples/test_weighted_spectrum.m
| D	matlab/examples/tools/PCACut.m
| D	matlab/examples/tools/README
| D	matlab/examples/tools/calcroc.m
| D	matlab/examples/tools/calcrocscore.m
| D	matlab/examples/tools/graph_hmm.m
| D	matlab/examples/tools/graph_hmm2.m
| D	matlab/examples/tools/model_to_graph.m
| D	matlab/examples/tools/plotroc.m
| D	matlab/examples/tools/read_feature_matrix.m
| D	matlab/examples/tools/readroc.m
| D	matlab/examples/tools/save_as_ascii.m
| D	matlab/examples/tools/save_as_double.m
| D	matlab/examples/wd_kernel.m
| D	matlab/examples/wds_consensus.m
| D	matlab/examples/wds_kernel.m
| D	matlab/examples/wds_shift_interp.m
| D	matlab/examples/weighted_spec.m
| D	matlab/testcases/WeightedDegreeString.m
| D	matlab/testcases/run_matlab.sh
| D	matlab/testcases/run_octave.sh
| D	matlab/testcases/test_chi2_kernel.m
| D	matlab/testcases/test_cws_kernel.m
| D	matlab/testcases/test_gaussian_kernel.m
| D	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_linear_kernel.m
| D	matlab/testcases/test_matlab.m
| D	matlab/testcases/test_octave.m
| D	matlab/testcases/test_poly_kernel.m
| D	matlab/testcases/test_sigmoid_kernel.m
| D	matlab/testcases/test_svm.m
| D	matlab/testcases/test_wdchar_kernel.m
| D	matlab/testcases/test_wds_kernel.m
| A	matlab_and_octave/examples/cluster_hierarchical.m
| A	matlab_and_octave/examples/cluster_kmeans.m
| A	matlab_and_octave/examples/entropy.m
| A	matlab_and_octave/examples/hmm.m
| A	matlab_and_octave/examples/lda_classification.m
| A	matlab_and_octave/examples/liblinear.m
| A	matlab_and_octave/examples/lik_kernel.m
| A	matlab_and_octave/examples/local_alignment_kernel.m
| A	matlab_and_octave/examples/lpboost.m
| A	matlab_and_octave/examples/lpm.m
| A	matlab_and_octave/examples/markov_chain.m
| A	matlab_and_octave/examples/mkl_classify_christmas_star.m
| A	matlab_and_octave/examples/mkl_pseudo_dna.m
| A	matlab_and_octave/examples/mkl_regression_3sine_waves.m
| A	matlab_and_octave/examples/mkl_regression_sine.m
| A	matlab_and_octave/examples/spec_interp.m
| A	matlab_and_octave/examples/spec_kernel.m
| A	matlab_and_octave/examples/string_features.m
| A	matlab_and_octave/examples/stringfeatures.m
| A	matlab_and_octave/examples/svm_classification.m
| A	matlab_and_octave/examples/svm_multiclass.m
| A	matlab_and_octave/examples/svmocas.m
| A	matlab_and_octave/examples/svmsgd.m
| A	matlab_and_octave/examples/svr_regression.m
| A	matlab_and_octave/examples/test_classifier.m
| A	matlab_and_octave/examples/test_combined.m
| A	matlab_and_octave/examples/test_combined2.m
| A	matlab_and_octave/examples/test_complex_scenario.m
| A	matlab_and_octave/examples/test_custom_kernel.m
| A	matlab_and_octave/examples/test_gnpp_svm.m
| A	matlab_and_octave/examples/test_interface.m
| A	matlab_and_octave/examples/test_kernel_optimization.m
| A	matlab_and_octave/examples/test_knn.m
| A	matlab_and_octave/examples/test_l2svm.m
| A	matlab_and_octave/examples/test_linadd.m
| A	matlab_and_octave/examples/test_linear_methods.m
| A	matlab_and_octave/examples/test_mkl.m
| A	matlab_and_octave/examples/test_mkl_svr.m
| A	matlab_and_octave/examples/test_mkl_svr_wrapper.m
| A	matlab_and_octave/examples/test_ocas_normalization.m
| A	matlab_and_octave/examples/test_one_class_svm.m
| A	matlab_and_octave/examples/test_poim_wds.m
| A	matlab_and_octave/examples/test_regression.m
| A	matlab_and_octave/examples/test_regression_linadd.m
| A	matlab_and_octave/examples/test_regression_mkl.m
| A	matlab_and_octave/examples/test_sliding_window.m
| A	matlab_and_octave/examples/test_sparse.m
| A	matlab_and_octave/examples/test_sparse_methods.m
| A	matlab_and_octave/examples/test_spec_consensus.m
| A	matlab_and_octave/examples/test_spec_interp.m
| A	matlab_and_octave/examples/test_subgradsvm.m
| A	matlab_and_octave/examples/test_svm_multiclass.m
| A	matlab_and_octave/examples/test_svmlight_libsvm.m
| A	matlab_and_octave/examples/test_svrlight_libsvr.m
| A	matlab_and_octave/examples/test_wd_kernel.m
| A	matlab_and_octave/examples/test_wd_linadd.m
| A	matlab_and_octave/examples/test_wd_wds_parallel.m
| A	matlab_and_octave/examples/test_wdocas.m
| A	matlab_and_octave/examples/test_wds_consensus.m
| A	matlab_and_octave/examples/test_wds_kernel.m
| A	matlab_and_octave/examples/test_wdshift_position_weights.m
| A	matlab_and_octave/examples/test_weighted_spectrum.m
| A	matlab_and_octave/examples/tools/PCACut.m
| A	matlab_and_octave/examples/tools/README
| A	matlab_and_octave/examples/tools/calcroc.m
| A	matlab_and_octave/examples/tools/calcrocscore.m
| A	matlab_and_octave/examples/tools/graph_hmm.m
| A	matlab_and_octave/examples/tools/graph_hmm2.m
| A	matlab_and_octave/examples/tools/model_to_graph.m
| A	matlab_and_octave/examples/tools/plotroc.m
| A	matlab_and_octave/examples/tools/read_feature_matrix.m
| A	matlab_and_octave/examples/tools/readroc.m
| A	matlab_and_octave/examples/tools/save_as_ascii.m
| A	matlab_and_octave/examples/tools/save_as_double.m
| A	matlab_and_octave/examples/wd_kernel.m
| A	matlab_and_octave/examples/wds_consensus.m
| A	matlab_and_octave/examples/wds_kernel.m
| A	matlab_and_octave/examples/wds_shift_interp.m
| A	matlab_and_octave/examples/weighted_spec.m
| A	matlab_and_octave/testcases/WeightedDegreeString.m
| A	matlab_and_octave/testcases/run_matlab.sh
| A	matlab_and_octave/testcases/run_octave.sh
| A	matlab_and_octave/testcases/test_chi2_kernel.m
| A	matlab_and_octave/testcases/test_cws_kernel.m
| A	matlab_and_octave/testcases/test_gaussian_kernel.m
| A	matlab_and_octave/testcases/test_kernels.m
| A	matlab_and_octave/testcases/test_linear_kernel.m
| A	matlab_and_octave/testcases/test_matlab.m
| A	matlab_and_octave/testcases/test_octave.m
| A	matlab_and_octave/testcases/test_poly_kernel.m
| A	matlab_and_octave/testcases/test_sigmoid_kernel.m
| A	matlab_and_octave/testcases/test_svm.m
| A	matlab_and_octave/testcases/test_wdchar_kernel.m
| A	matlab_and_octave/testcases/test_wds_kernel.m
|  
* commit 11b695f9780919b0e0eb58b1c32d23af664ec208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 4 13:34:27 2008 +0000
| 
|     - compile fix for octave
|     - use set_real_vector for HMM in SGInterface
|     - R interface cleanups
|     - use a single directory for octave and matlab as octave 3.0 supports all
|     matlab types/functions now
| 
| M	R/examples/hmm.R
| A	matlab/examples/lik_kernel.m
| A	matlab/examples/markov_chain.m
| A	matlab/examples/spec_kernel.m
| A	matlab/examples/stringfeatures.m
| M	matlab/examples/svm_classification.m
| A	matlab/examples/wd_kernel.m
| A	matlab/examples/wds_kernel.m
| D	matlab/testcases/run.sh
| A	matlab/testcases/run_matlab.sh
| A	matlab/testcases/run_octave.sh
| A	matlab/testcases/test_octave.m
| A	matlab/testcases/test_wdchar_kernel.m
| D	octave/examples/hmm.m
| D	octave/examples/lik_kernel.m
| D	octave/examples/markov_chain.m
| D	octave/examples/spec_kernel.m
| D	octave/examples/stringfeatures.m
| D	octave/examples/svm_classification.m
| D	octave/examples/svr_regression.m
| D	octave/examples/wd_kernel.m
| D	octave/examples/wds_kernel.m
| D	octave/testcases/run.sh
| D	octave/testcases/test_chi2_kernel.m
| D	octave/testcases/test_gaussian_kernel.m
| D	octave/testcases/test_kernels.m
| D	octave/testcases/test_linear_kernel.m
| D	octave/testcases/test_octave.m
| D	octave/testcases/test_poly_kernel.m
| D	octave/testcases/test_sigmoid_kernel.m
| D	octave/testcases/test_wdchar_kernel.m
| M	src/configure
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 9de8b69d921f6a31804aadccc0f388d985296bd9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 3 15:56:08 2008 +0000
| 
|     interface:
|     - Added some safeguards to PythonInterface.
|     - Broke out set_real_matrix for debugging; it is still not working
|       properly.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 81d006489b4b39ee22f6520c6703d4f2ca27afee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 13:52:14 2008 +0000
| 
|     fix examples for new R interface. we still need to fix get/set vectors for all
|     interfaces
| 
| M	R/examples/hmm.R
| M	R/examples/svm_classification.R
| M	R/examples/svr_regression.R
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 0a492945e808a1e5de7d03aec5bb10d3eeeac336
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Apr 3 12:11:34 2008 +0000
| 
|     interface:
|     - Fixed compilation and implemented create_return_values() in PythonInterface.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
|  
* commit 635a259cd194944b8778953ff747eb4272431d67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 11:08:26 2008 +0000
| 
|     completed R interface - not many datatypes are supported in R :(
| 
| M	src/interface/RInterface.cpp
|  
* commit 1633e22ba1d3f28395a44c33dde2a10923a7a96c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 10:21:49 2008 +0000
| 
|     - argh, we need to link to -llapack too as some functions are not clapack
|     - remove submit_return_values, and modify create_return_values, to return true
|     if successfull. change interfaces accordingly
| 
| M	src/configure
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d53f2595e493393ca328cf471981a88cd8d2ed5f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 3 09:23:53 2008 +0000
| 
|     we actually require atlas for compilation, not lapack. (clapack_* functions are
|     required) thus always link with -llapack_atlas
| 
| M	src/configure
|  
* commit 6c0aad855b109dff5c85bfba3a1798a431a7e06f
| Author: Yaroslav Halchenko <yoh@psychology.rutgers.edu>
| Date:   Wed Apr 2 15:09:13 2008 +0000
| 
|     fix possible segfault in SparseFeatures.h (thanks to Andrey T)
| 
| M	src/features/SparseFeatures.h
|  
* commit dd754e8d453ba9fee9084040ca3fcbdd2fd8130e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 2 15:03:07 2008 +0000
| 
|     test swig version
| 
| M	src/configure
|  
* commit 2d5aa1ebb00345275acdac88f4cf4316502d235a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Apr 2 14:09:33 2008 +0000
| 
|     interface:
|     - Fixed initialisation of PythonInterface.
|     - Modified examples to use new interface.
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	python/examples/test_mkl.py
| M	src/interface/PythonInterface.cpp
|  
* commit 3c5d38d01050dffa2638b5c9693cc05372a76116
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 2 13:42:02 2008 +0000
| 
|     potentially fix a bug in make contiguous
| 
| M	src/lib/python_typemaps.i
|  
* commit a603215694abd11ba2b51d2182eb47cf3a74878b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Apr 1 14:34:08 2008 +0000
| 
|     interface:
|     - Implemented methods for PythonInterface - they compile but most likely won't work.
| 
| M	src/interface/PythonInterface.cpp
|  
* commit 222f7a29ce0f38de1cf28ddc1fe5127639da3726
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 1 10:45:36 2008 +0000
| 
|     get/set_features for R interface: note that the number of arguments check in
|     interface/SGInterface.cpp was disabled - we need an interface change here
| 
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 850988cc7990a13f8f3cba979953c2991b6dd437
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:33:21 2008 +0000
| 
|     interface:
|     - Fixed a copy&paste bug.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 20c4121e8aabc62c832e9e14009f51dbbc0827d4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:17:31 2008 +0000
| 
|     interface:
|     - Improved handling of cell arrays in get_argument_type in MatlabInterface.
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 3e41b38b5ed8d42492cf1b32454802ca79d2f47e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 17:02:43 2008 +0000
| 
|     interface:
|     - Implemented get_argument_type() in PythonInterface.
| 
| M	src/interface/PythonInterface.cpp
|  
* commit c4c3da542700c52f93a9980d20865b1bc693ddce
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 31 13:13:31 2008 +0000
| 
|     interface:
|     - Made Python interface compile again.
| 
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/SGInterface.h
|  
* commit a88b257f37b26d156f1957617ebecd19caa8a3a7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Mar 30 16:38:55 2008 +0000
| 
|     interface:
|     - Fixed an erroneous delete[] (and now unnecessary copying of data) while
|       checking octave interface on matlab examples.
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit c4f0149d6e1747cd8cf77b1bd59416d8ca0e45a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 29 19:59:16 2008 +0000
| 
|     get R interface to compile again
| 
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
|  
* commit 7b53b61bb652a340cc18a304f17bc337b59a1e90
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Mar 29 18:55:38 2008 +0000
| 
|     interface:
|     - Got rid of SINGLE_STRING
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 218d90fa93229ddec930c4ff2cf2a23075b44bc6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 21:17:49 2008 +0000
| 
|     free the matrix as long as num_vectors is still correct
| 
| M	src/features/SparseFeatures.h
|  
* commit 8118b13c103ee204b406896adfac59482c179eb3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 16:17:03 2008 +0000
| 
|     octave interface mostly works now (at least svm_classification, test_wd_kernel,
|     		svr_regression ...)
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit dda0c45ca60ea5d0e20889f3c8f1b9475ed44920
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 13:24:00 2008 +0000
| 
|     don't remove configure.log when --help is called
| 
| M	src/configure
|  
* commit 857beea97289e8a1abcfbad7f3b469ca1d1bc79b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 11:39:47 2008 +0000
| 
|     - fix another SG_REF / UNREF mismatch: the kernel get_lhs()/rhs() functions need
|     to increment reference counts when returning a feature object, use rhs/lhs
|     internally and otherwise make sure that SG_UNREF is called for each SG_REF
|     (same for CDistance)
|     - add an assertion for get_features to not crash if no feature object is available
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/interface/SGInterface.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/regression/KRR.cpp
|  
* commit 3455202a2aa644cf9a227a52847f5bf46a16aa36
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 10:23:19 2008 +0000
| 
|     adjust for changes in pluginestimate
| 
| M	src/guilib/GUIPluginEstimate.cpp
|  
* commit a3e42ee225818e54f651553c78f783352c1ecef1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 28 09:13:34 2008 +0000
| 
|     - fix several further memory leaks
|     - make (Simple)LocalityImproved kernel thread safe
|     - PluginEstimate is now derived from classifier (removed obsolete test
|     		function, make classifier framework compatible and adjust test
|     		suite/examples)
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/kernel.py
| M	src/classifier/LinearClassifier.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit d876fb173b2440cec3ac3f19246724112c88aeb4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 23:34:32 2008 +0000
| 
|     one further leak (forgotten to free block weights on object destruction)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit bd836294cefde53b35468dd7f713239eb6814d54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 23:25:07 2008 +0000
| 
|     fix several further memory leaks and a stupid double free
| 
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MultiClassSVM.i
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/features/Labels.cpp
| M	src/features/SparseFeatures.h
|  
* commit 2a8520ce85dda9e3dd2b6f2b44bda1c93e2bd534
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 19:26:13 2008 +0000
| 
|     get_labels() returns a new object so mark it with %newobject
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit 98875e6bc20f22eceaee50b28629ff346f3576a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 18:01:32 2008 +0000
| 
|     in all set_ routines, UNREF the old objects first before overwriting them, this should fix another set of memory leaks like:
|     
|     gk=GaussianKernel(f1,f2,sigma)
|     	..
|     gk.init(f3,f4)
|     	..
|     gk.init(f5,f6)
| 
| M	src/classifier/Classifier.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/distance/DistanceMachine.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.h
|  
* commit bb49e9aec40294ffe3efd1d2901f22dfbe72f3f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 17:30:12 2008 +0000
| 
|     this should fix another couple of leaks for linear/sparselinear classifiers and
|     distancemachines
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
|  
* commit d420458a839f99d3b967cdacb55613ca4ff9017c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 16:56:00 2008 +0000
| 
|     fix double free
| 
| M	src/classifier/svm/SVMSGD.cpp
|  
* commit 5576ec8992343a5caecc4faf48d57f2639c8e2ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 16:50:07 2008 +0000
| 
|     fix missing SG_REF/UNREFs on many places: whenever possible use the
|     set_features/set_labels/set_kernel functions as they will take care of
|     SG_REFfing things. UNREFfing is done in the baseclasses, like
|     DistanceMachine,KernelMachine,Classifier, Linear/SparseLinearClassifier
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/interface/OctaveInterface.cpp
|  
* commit 9a97feb659637487f4c36ab0be1286e9c3f4eaf4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 15:30:33 2008 +0000
| 
|     - link octave w/ -lcruft (for exception handling)
|     - get/set features at least for double matrices works
| 
| M	src/configure
| M	src/interface/MatlabInterface.cpp
| M	src/interface/OctaveInterface.cpp
|  
* commit 04dcb662b35183fa402a78e5ac5e204168a21c23
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 27 15:25:03 2008 +0000
| 
|     interface:
|     - Went through all matlab examples, except those requiring CPLEX and aborted
|       those taking longer than 5 minutes. Fixed some of the examples and fixed the
|       new interface in the process.
| 
| M	matlab/examples/cluster_hierarchical.m
| M	matlab/examples/cluster_kmeans.m
| M	matlab/examples/string_features.m
| M	matlab/examples/test_gnpp_svm.m
| A	matlab/examples/test_interface.m
| M	matlab/examples/test_ocas_normalization.m
| M	matlab/examples/test_sliding_window.m
| M	matlab/examples/test_spec_consensus.m
| M	matlab/examples/test_svm_multiclass.m
| M	matlab/examples/test_svmlight_libsvm.m
| M	matlab/examples/test_wdocas.m
| M	matlab/examples/test_wds_consensus.m
| M	matlab/examples/test_wdshift_position_weights.m
| M	matlab/examples/wds_consensus.m
| M	matlab/examples/wds_shift_interp.m
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b5cd46e4f4a383cc1e436641f1c3e563c5e4b1e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 13:41:42 2008 +0000
| 
|     get octave interface to at least compile again
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
|  
* commit eb423014f748cfc75189713fc2d37332dfd9e1ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 11:00:25 2008 +0000
| 
|     use kernel instead of get_kernel() for all classes derived from CKernelMachine
|     to fix the 'get_kernel()' memory leak
| 
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 57fa631a163208a1159618f005617e4cc219a515
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 10:31:32 2008 +0000
| 
|     based on yaroslavs patch fix the memoryleaks occuring on load and
|     set_(sparse)_feature_matrix
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/IntFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortRealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
|  
* commit c104a93ca28dde42234fda830c0f78565628678d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 27 10:07:14 2008 +0000
| 
|     attempt to fix the memory leaks for get_labels():
|     	now we don't use get_labels in the classes derived from CClassifier, but
|     	just the protected member variable 'labels' directly
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit f397392c9f18ad834bbc0c573cd33c0dfbff4712
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 17:28:39 2008 +0000
| 
|     interface:
|     - Fixes, fixes, fixes!
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit e3392170688fc97de348cf67ec991eb2fd5bbb38
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 16:31:27 2008 +0000
| 
|     use mxGetPr instead of mxGetData for sparse matrix
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 29a8392ccddb26227775715366e98deaa0623ea7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 16:23:07 2008 +0000
| 
|     interface:
|     - Getting closer...
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit ac99d48b05a784cdf11b6446dcdc98ea9ef6f90a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 16:16:43 2008 +0000
| 
|     use nnz for SET_SPARSe
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
|  
* commit 5b27e690f57e937275175c6b887dd0eddaefb450
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 16:04:36 2008 +0000
| 
|     interface:
|     - Even more fixes, still not quite working
|     lib/io:
|     - Added macro NOTIMPLEMENTED
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| M	src/lib/io.h
|  
* commit bf80477214207c54c45d0af570b860f39e495202
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:54:35 2008 +0000
| 
|     another attempt to fix stringf
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit dcd0200aeb3b839fe6e5a21209e08634b3a931bb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:29:43 2008 +0000
| 
|     bug fix in SET_STRINGLIST
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit 63d943ba5c30a78c672a4a0d1da28240977d4cc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:20:40 2008 +0000
| 
|     add get_featurs functions to string features
| 
| M	src/features/StringFeatures.h
|  
* commit af93fbf64d86ae2b7ffafd564dcb7e53f8252e3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 15:06:46 2008 +0000
| 
|     fix shortreal/int features
| 
| M	src/features/IntFeatures.cpp
| A	src/features/IntFeatures.i
| M	src/features/ShortRealFeatures.cpp
| M	src/features/ShortRealFeatures.h
| A	src/features/ShortRealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/common.h
|  
* commit e688f5ea4ee34320ab006932651850dd10155b1e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 14:52:03 2008 +0000
| 
|     interface:
|     - Some more tidbits
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 1c37e4dcb6e0cdc0a43bd0bd6e504dbde7c3c060
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 26 14:41:10 2008 +0000
| 
|     add short/int features
| 
| A	src/features/IntFeatures.cpp
| A	src/features/IntFeatures.h
| A	src/features/ShortRealFeatures.cpp
| A	src/features/ShortRealFeatures.h
| M	src/kernel/GaussianKernel.cpp
|  
* commit de230408fcd426860a66855cf8921c845c28cf18
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 26 11:26:26 2008 +0000
| 
|     interface:
|     - First stab at getting set_features to work.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit d26f12b7d81db6566405f3cf3961b0ca19a8c96d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 17:24:25 2008 +0000
| 
|     use macros for everthing in matlab interface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.h
|  
* commit 5bde3c623249389d78ca4f87ac38bc783713d1a1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Mar 25 17:19:42 2008 +0000
| 
|     interface:
|     - Removed interface helper classes
| 
| M	src/interface/SGInterface.h
| D	src/interface/SGInterfaceDataType.h
| D	src/interface/SGInterfaceMatrix.h
| D	src/interface/SGInterfaceStringList.h
| D	src/interface/SGInterfaceVector.h
|  
* commit 98703658cdd462242fd1f765ddd0412cc1cee5f8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Mar 25 17:15:45 2008 +0000
| 
|     interface:
|     - Switch from InterfaceVector/Matrix/StringList back to old (but improved)
|       functions get/set_<type>_vector/matrix/string_list
| 
| M	src/interface/SGInterface.cpp
|  
* commit 578a45a8c69214213a1de7d3c5788c008751bebf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 16:23:13 2008 +0000
| 
|     use macros for interface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.h
|  
* commit ccbbe801ebd2cc7c2b2e6b25dc05d8f45b42af3d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 25 07:44:26 2008 +0000
| 
|     fall back magic to -lutil and -ldl
| 
| M	src/configure
|  
* commit edb7a9b7419370b12f0f0df047caf781ff1d4f51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 17:25:15 2008 +0000
| 
|     add missing model=NULL
| 
| M	src/classifier/svm/LibSVMOneClass.cpp
|  
* commit cf87d19c246fb932c771da3eca4744d3d20e2d8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 17:06:36 2008 +0000
| 
|     fix leak also for libsvmone/multi class
| 
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMOneClass.cpp
|  
* commit 463b1ddce384bb9d5c0ab490fd2f21868cf45860
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 20 16:52:17 2008 +0000
| 
|     kernel:
|     - Added patch from 2706+raetsch: fixed a bug in clean_kernel for the WD kernel
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit a214847bd3b74db61e3a9756cea5269e2df1c449
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Mar 20 15:44:17 2008 +0000
| 
|     included Alexander binders bugfix.
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 13be502a976b6af7d27a76579384739c607d82ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 20 05:39:09 2008 +0000
| 
|     fix compilation if sqrtl is not available (fall back to sqrt)
| 
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 2a4254b9ac6b5d563dd77ae70962481ed28bc22a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 19 19:41:16 2008 +0000
| 
|     included Alexander Binders bugfix.
| 
| M	src/classifier/svm/MultiClassSVM.cpp
|  
* commit d16cd05c5e5622d80a7481088a91e67889b635af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 17 13:41:56 2008 +0000
| 
|     interface:
|     - Removed most const stuff, as it seemed too much hassle
|     - Converted interface methods to use new InterfaceVector/Matrix/StringList
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterfaceMatrix.h
| M	src/interface/SGInterfaceStringList.h
| M	src/interface/SGInterfaceVector.h
|  
* commit 564bbddcd66b352f2c3ccc8c7da4d4c15de5cc9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Mar 14 17:58:58 2008 +0000
| 
|     interface:
|     - Hopefully this approach sucks less in regard to code duplication, templates
|       and polymorphism.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
| A	src/interface/SGInterfaceDataType.h
| A	src/interface/SGInterfaceMatrix.h
| A	src/interface/SGInterfaceStringList.h
| A	src/interface/SGInterfaceVector.h
|  
* commit 3d75da5572db0cbc3bf880a0d07f405403491cf7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 10 17:42:20 2008 +0000
| 
|     fixed a minor issue in progress reporting.
| 
| M	src/lib/io.cpp
|  
* commit 69ef85f8e9f3528b86080297f0e0df54dfc105e8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 10 16:07:28 2008 +0000
| 
|     interface:
|     - Fixed a couple of compilation issues
| 
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.h
|  
* commit c2360024f5adc3e56b30a0eb3bc34877dcac2153
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 10 16:01:00 2008 +0000
| 
|     interface:
|     - A bit of cleanup, made sure that basic input/output still works
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit db0afa875868ad15ce404e023d9c27bcbf38bd39
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 10 09:09:47 2008 +0000
| 
|     clear the cancel_computation flag before starting a new computation.
|     Otherwise, they are all canceled.
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit e969c5f687cfd2a2f250ff230f6b0b397d2ab085
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Mar 7 17:49:16 2008 +0000
| 
|     features:
|     - Fixed typo in docstring
|     interface:
|     - Added remaining methods. set_features and the methods with zillions of
|       parameters need discussion and coding, though. And naturally nothing is
|       bound to work yet. :)
| 
| M	src/features/StringFeatures.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 3fa301aece1a83a136e91d2512536d38bb50b2f0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 6 17:00:59 2008 +0000
| 
|     interface:
|     - Even more methods
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 702797464333b59c31825560b22df494ac5a4bb9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Mar 6 12:57:08 2008 +0000
| 
|     interface:
|     - Added more methods (best path)
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 7802808a2803e900ccca670ed4766c38fd06ffaa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 19:03:06 2008 +0000
| 
|     interface:
|     - Added a few more methods
|     - Included previously forgotten implementation for F_WORD in C_STRING in
|       get_features
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 480baae00ad391671441365b331ec717ee5fc1d7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 18:26:01 2008 +0000
| 
|     interface:
|     - Scrapped template stuff, seems to be too hard at the moment
|     - Added get/set functions for SHORT/WORD sparse/dense vectors/matrices
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c87a40b7f2420e0f2408cd105b851f41b5c588e2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Mar 5 12:47:35 2008 +0000
| 
|     interface:
|     - Added some more functions and made some preparations for templating stuff
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c5bac79789be6ea6fbccd4cc87c86ef2cb6f9829
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 09:54:14 2008 +0000
| 
|     removed debug output
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 854b5c12774cd2decb6f616a9ad865c6b98b7266
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 09:53:16 2008 +0000
| 
|     implemented a speedup for the kernel normalization.
|     This helps when you have many, long sequences with a relatively low degree (<8).
| 
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit e7f801090ecc93e7fdc892c5042413fda01d50a8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Mar 5 07:28:04 2008 +0000
| 
|     added a function for allowing the direct use of kernel_optimization from python
| 
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit f8ef98d158af7f8f03f76b33acf22cd7265a477d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:53:12 2008 +0000
| 
|     removed debug output
| 
| M	src/features/StringFeatures.h
|  
* commit 87836b4a329df0822a40f9e7cf9993982a262012
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:42:41 2008 +0000
| 
|     *** empty log message ***
| 
| M	src/features/StringFeatures.h
|  
* commit 4bf3dc921a4772a80c3ecee89cffc2edd613067d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Mar 4 14:42:29 2008 +0000
| 
|     fixed a logical bug, which appears when having more than one
|     preprocessor.
| 
| M	src/features/StringFeatures.h
|  
* commit cbc71e6559c68c74cf6b6a0e0b8f6c35d1c4bd4e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 18:26:24 2008 +0000
| 
|     interfaces:
|     - Added methods to get/set char vectors/matrices as need by
|       CSGInterface::a_get_WD_consensus
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 2a22058bb3bd2f3f00435a9a9562a349366a8bf5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 17:52:45 2008 +0000
| 
|     kernel:
|     - Compile fix for WeightedDegreePositionString kernel
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit dcdb181f887924c87fda77171628a177570321cb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Mar 3 17:52:08 2008 +0000
| 
|     interface:
|     - Added some more interface methods.
| 
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit c24e1b2dc344941766b51eee94f34ae9e942fbd5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 18:19:51 2008 +0000
| 
|     One typemap still has a problem (get_POIM2).
| 
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 25cbc43d21e21722f1e7ba25d2fc63488318b4ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 17:57:03 2008 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1d3c39ef159dd0af50fe170c37b805b5311d48b9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Feb 29 17:56:17 2008 +0000
| 
|     initial version of a swiggable POIM interface.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 6098e304d0937b083610cee0778d86b5673ccb30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 16:57:23 2008 +0000
| 
|     draft: split up poim computation
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 556af955e76b5a54596a24d550ebec4710b90bb0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 16:28:23 2008 +0000
| 
|     add set cache size option
| 
| M	src/kernel/Kernel.h
|  
* commit 45413d90908c28f9c92684c2839fc876c6ab1952
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 29 16:17:58 2008 +0000
| 
|     interface:
|     - Added about 1/3 of interface methods in gui/Matlab.cpp to
|       interface/SGInterface.cpp
|     - Introduced a second counter for arguments (now: in and out)
|     - Made set functions to take a const as first argument
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 533899510fa03e0b573f1c88957a14b0a38cdb9f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 29 10:03:37 2008 +0000
| 
|     assume the python libraries are in the standard library paths (should fix a
|     compile failure on opensuse) - not clear if it breaks compilation on OSX etc
| 
| M	src/configure
|  
* commit fc3e003d67dcaf73301b465f2c6bdede3f827946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 28 20:27:30 2008 +0000
| 
|     this should fix a few more memoryleaks reported by Yaroslav including the one for svmlight (kernel cache not being cleaned up)
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/Labels.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
|  
* commit 43c11b2ad276e0ddcea56ba7a562a2402c4c1e92
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 28 14:18:46 2008 +0000
| 
|     interface:
|     - All get/set functions should now be implemented and working in MatlabInterface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 084d2e50b5dfa6e6c748baf4a67d0c2074713b50
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 27 17:25:16 2008 +0000
| 
|     interface:
|     - Implemented most set functions for Matlab (sparse not working correctly,
|       though)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/SGInterface.cpp
|  
* commit 2f25d5cf1a9c7653bee7ff05af21cf09c4d11e06
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 27 16:59:02 2008 +0000
| 
|     fix leak, by deleting history...
| 
| M	src/classifier/svm/GNPPSVM.cpp
|  
* commit df80234a9854e14465a19411f26558aadc726d06
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 27 16:04:50 2008 +0000
| 
|     interface:
|     - Replaced get_current_argument by get_arg_increment and implemented
|       set_arg_increment for the interfaces
|     - Added usage of jump list for accessing Shogun methods in a loop instead of
|       endless case switches.
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 1f9a38a79a08af76ef2169eca686a2e2d17415d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:24:41 2008 +0000
| 
|     fix ocas/sgd example
| 
| M	python-modular/examples/all_classifier.py
|  
* commit d310a832584ec9c7cba134d0fe6e804cd53e873f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:20:18 2008 +0000
| 
|     fix another delete / free mismatch and another leak (in libsvm)
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 921dd3c89e5e60dd1fca98f19a184bf6b16e055b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 23:14:45 2008 +0000
| 
|     as we own the features we should erase them whenever they are set, and of course also on exit
| 
| M	src/features/SimpleFeatures.h
| M	src/lib/python_typemaps.i
|  
* commit 7c6f290217c4f94ccd8ed37f1bef600bbfc1e2fb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 22:41:41 2008 +0000
| 
|     fix delete[] / free mismatch
| 
| M	src/features/SimpleFeatures.h
| M	src/lib/python_typemaps.i
|  
* commit 570328e86c917b840ec5054609975b1bd4bc3ff8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 21:36:19 2008 +0000
| 
|     fix compile error with python-modular interface
| 
| M	src/interface/MatlabInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit bd874d76203a81bc62d4df5b9f44f2dbe64a32f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 18:54:54 2008 +0000
| 
|     this should fix the kernel cache memeory leak with gpdtsvm
| 
| M	src/classifier/svm/GPBTSVM.cpp
|  
* commit 1ee21b6bcd28219df8b66acdd2dbb2f201ef3019
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 26 17:04:18 2008 +0000
| 
|     interface:
|     - Implemented a first set function in MatlabInterface and a test function for
|       it in SGInterface
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/PythonInterface.cpp
| M	src/interface/RInterface.cpp
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 77d17d8d10bff191ad84ca6459bd50111fffc75f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 26 14:50:20 2008 +0000
| 
|     interface:
|     - switched get functions to call by reference
|     - implemented get functions in MatlabInterface (dunno if it works, though)
| 
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| M	src/interface/OctaveInterface.cpp
| M	src/interface/OctaveInterface.h
| M	src/interface/PythonInterface.cpp
| M	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit b063e7c303a1fcbd9ade3e7c872065b0d4a07efc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 10:36:58 2008 +0000
| 
|     - Implement python interface
|     - Now always throw shogun exceptions on SG_ERROR. These exceptions are catched if
|     thrown by the global interface handle(), catch for octave and R, python for
|     now. We might want to do the same with matlab etc.
| 
| M	src/gui/Python.cpp
| M	src/interface/OctaveInterface.cpp
| A	src/interface/PythonInterface.cpp
| A	src/interface/PythonInterface.h
| M	src/interface/RInterface.cpp
| M	src/lib/io.cpp
|  
* commit 62422b6d38fd111c41cb0c9961d4c16986ca808a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 08:43:41 2008 +0000
| 
|     add basic R interface functionality (currently breaks everything except send_command), switch R interface to use .External method
|     
|     	to test, use:
|     
|     ./configure --interface=R
|     make
|     
|     R
|     
|     dyn.load('sg.so')
|     sg <- function(...) .External("sg", ...)
|     sg('send_command','help')
| 
| M	src/gui/R.cpp
| A	src/interface/RInterface.cpp
| A	src/interface/RInterface.h
| M	src/interface/SGInterface.cpp
|  
* commit 7d2ffa0e9d665c508204cb0d0c35b56dd1f4eb1a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 26 07:03:48 2008 +0000
| 
|     - remove get_int_from_string from all interfaces and do this directly in SGInterface (using get_string)
|     - increment arg_counter on retrieval of values in matlab interface
|     - add octave interface functions:
|     	NOTE THAT THIS FOR NOW BREAKS THE WHOLE OCTAVE INTERFACE
| 
| M	src/gui/Octave.cpp
| M	src/interface/MatlabInterface.cpp
| M	src/interface/MatlabInterface.h
| A	src/interface/OctaveInterface.cpp
| A	src/interface/OctaveInterface.h
| M	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit f913b2119c8ee1daa38c3327b6eaae9d4910bfea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 17:55:25 2008 +0000
| 
|     more interface functions to deal with int/float/ etc
| 
| M	src/interface/MatlabInterface.cpp
|  
* commit f1faec9b74c67865c4660ce5fca8f760018c5e61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 17:30:32 2008 +0000
| 
|     - generic interface extended
|     - minimal matlab interface based on generic interface, with fall back on old guiinterface
| 
| M	src/gui/Matlab.cpp
| A	src/interface/MatlabInterface.cpp
| A	src/interface/MatlabInterface.h
| A	src/interface/SGInterface.cpp
| M	src/interface/SGInterface.h
|  
* commit 23a9411f832b49c5ba90145e170048e4ccb33b67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 15:28:38 2008 +0000
| 
|     general interface
| 
| A	src/interface/SGInterface.h
|  
* commit 695bdad7213af12032eda00f29eac5bcc11b2eee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 25 15:26:54 2008 +0000
| 
|     allow to increase number of dimensions in sparse features
| 
| M	src/features/SparseFeatures.h
|  
* commit 6cb9dc0060d3ff61ea4f4f11b4aacbc2c21e1043
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 21 14:11:42 2008 +0000
| 
|     testsuite:
|     - Regenerated testdata to even ground for changes to testgenerator
| 
| M	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| M	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
|  
* commit f091d3e4d881b0eee3b44ac6371c85ca3916d1c3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Feb 21 00:56:42 2008 +0000
| 
|     evaluation:
|     - Fixed balanced error in PerformanceMeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
|  
* commit ad26e5fd5e197bacd5c3089d2743610026b91c47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 20 19:55:09 2008 +0000
| 
|     - fix stupid bug in sparse features & svmlight file loading
|     - fix memory leak in ocas
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/features/SparseFeatures.h
|  
* commit 4d7b92fdcd916e9bf39e264de740aa37b87334e9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 20 19:51:30 2008 +0000
| 
|     evaluation:
|     - PerformanceMeasures improved: no alignment to ROC/PRC of accuracy/F-measure,
|       2 dimensional arrays with sorted outputs + measure instead (see get_all_*);
|       code-efficient usage of compute_confusion_matrix; no exception handling hack in
|       constructor
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit d52802887dc3ef98f25071f4bcbf991e9878bb16
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 20 17:38:58 2008 +0000
| 
|     add example on how to read svm light format
|     fix crasher when writing and labels are None
| 
| A	python-modular/examples/read_svmlight_format.py
| M	src/features/SparseFeatures.h
|  
* commit fc87e5fc2d1a6bff828fa5b54a26dcbc27eaad2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:30:01 2008 +0000
| 
|     really fix building...
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.h
|  
* commit 5b5b381609cfc7e69a11f8797328cfec500f5727
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:17:12 2008 +0000
| 
|     compile & style fixes for dynprog & matlab
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.h
|  
* commit ff47ab85e5ae378cd90185574c5c620feda2099a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:08:42 2008 +0000
| 
|     reorder definition and add m prefix to member variable
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit c14f0257920cab75991ee76626d072e74ce1b9b3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 18:05:03 2008 +0000
| 
|     - remove svmlight tests when svmlight is disabled
|     - prepare for 0.5.1
|     - replace ShogunException by SG_ERROR
|     - include sebastian in AUTHORS
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/doxygen/Doxyfile
| M	src/AUTHORS
| M	src/Makefile
| M	src/NEWS
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
|  
* commit ac72e98b262a30d3eb2ffa1305eea20c6a41d50b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Feb 19 17:05:20 2008 +0000
| 
|     precompute content svm values; preliminary modifications; not functionalmake -j 5!
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit e3709072e6aeef38030382278882ca80da971816
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 19 16:43:36 2008 +0000
| 
|     - fix warning in pr_loqo
|     - make configure work with newer atlas/blas/lapack
|     - several performance measure fixes
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 0e0292e8ad0ab1d46f95fdb1e0f403ee112caf1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 18 19:18:01 2008 +0000
| 
|     add missing 1,1 for fp,tp roc matlab example
| 
| M	matlab/examples/tools/calcroc.m
|  
* commit 74c0cf12f483de580ab6350d4353fccb2e5c7f84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 19:01:54 2008 +0000
| 
|     evaluation:
|     - Updated swig-related documation
| 
| M	src/evaluation/Evaluation.i
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 5765deec3bed8cb891067df87dfbd7ac77c48a82
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 18:40:12 2008 +0000
| 
|     evaluation:
|     - Added get_error0() to PerformanceMeasures
|     - Added a few more explicit typecasts to DREAL for various calculations
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 95f7696842ea3b359d77c9c2b9e87521bd86321a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 15:43:35 2008 +0000
| 
|     documentation:
|     - Improved doxy2swig when handling documented exceptions
| 
| M	src/.doxy2swig.py
|  
* commit 9febffbedec06f8e999cf0d4a5a3ed7df4856a99
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Feb 18 14:24:19 2008 +0000
| 
|     evaluation:
|     - Various cleanups and docstring updates in PerformanceMeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit c2ed442c07c7eef17bf7fcc6e4cc64a5ccc616ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 17 18:38:10 2008 +0000
| 
|     fix documentation when writing features in svm light format..
| 
| M	src/features/SparseFeatures.h
|  
* commit 5878b7343dc2b2be2fa2632def12fc0841bfefe9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 17 18:33:59 2008 +0000
| 
|     implement efficient (and hacky) reading of svm light format (> twice as fast as
|     svmperf2.5) and fix minor warning in perfmeasures
| 
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/features/SparseFeatures.h
|  
* commit 0c443166a320a28ceaa5d001f0f9d897eece79a0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 16 12:14:13 2008 +0000
| 
|     evaluation:
|     - Added DET to PerformanceMeasures
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit e2a02d92fb75c897c3a8fa7f18a748fcd8d3cc0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 15 21:32:43 2008 +0000
| 
|     cleanups
| 
| M	src/kernel/PyramidChi2.cpp
| M	src/kernel/PyramidChi2.h
|  
* commit 54489250dbceb59c8878ac9b32c2b0ee54ce1f43
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 15 16:57:28 2008 +0000
| 
|     evaluation:
|     - Added CC, WRacc and balance to PerformanceMeasures
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit c464fe3448e65c31f01fc0aae69018ac2ec04827
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 15 13:38:35 2008 +0000
| 
|     evaluation:
|     - Added PRC + F-measure to PerformanceMeasures
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit d490a97084bfeb05e59ed13e0b330f0520e8b25f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 15 08:16:03 2008 +0000
| 
|     ignore error when trying to version Doxyfile
| 
| M	src/Makefile
|  
* commit 6d2ae4b4854abbed1ac409223980b2a53502dde4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 13 14:29:10 2008 +0000
| 
|     evaluation:
|     - Added auROC, aoROC and accuracy + error aligned to ROC to
|       PerformanceMeasures
|     - Updated example accordingly
| 
| M	python-modular/examples/all_evaluation.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 9eb6b6f23fdf54d46e006dcd8266735fff4237f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 13 13:22:41 2008 +0000
| 
|     add favicon to webpage
| 
| M	doc/doxygen/Doxyfile
|  
* commit 0b79e0e0b792d25cf9f76ac9d5fa8903afa51416
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Tue Feb 12 15:23:11 2008 +0000
| 
|     1)added EKernel_Type K_PYRAMIDCHI2 in common.h
|     2) added PyramidChi2.{h,cpp} as a pyramid kernel over Chi2 Kernels in a version which is adapted to shogun
| 
| A	src/kernel/PyramidChi2.cpp
| A	src/kernel/PyramidChi2.h
| A	src/kernel/PyramidChi2.i
| M	src/lib/common.h
|  
* commit 17852bacb98f2d4f6d6dd64dfc3ad15e0c454ce2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Feb 10 18:25:04 2008 +0000
| 
|     evaluation:
|     - Fixed example for ROC on SVMOcas
| 
| M	python-modular/examples/all_evaluation.py
|  
* commit e0333909a23110befe06972dd22b0c16d2efb4be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 8 21:31:52 2008 +0000
| 
|     enable building when doxygen is not installed
| 
| M	src/configure
|  
* commit a3cd66a247678e1bab82087cb96de5d87296bc9e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 8 13:00:39 2008 +0000
| 
|     evaluation:
|     - Added example for peformance measures ROC, including plotting. Does not work
|       nicely, though.
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/examples/all_classifier.py
| A	python-modular/examples/all_evaluation.py
| M	python-modular/examples/matplotlib/util.py
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
|  
* commit 3f8968b44c47d337021dd4b95d004840e75e3615
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 6 21:35:23 2008 +0000
| 
|     evaluation:
|     - PerformanceMeasures: first stab at ROC
| 
| M	doc/doxygen/Doxyfile
| M	src/evaluation/Evaluation.i
| M	src/evaluation/PerformanceMeasures.cpp
| M	src/evaluation/PerformanceMeasures.h
| M	src/evaluation/PerformanceMeasures.i
|  
* commit 63038280925f0ec86043a52c30cf628a5c14ac42
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Feb 6 17:13:52 2008 +0000
| 
|     lib/Mathematics:
|     - CMath::sign is properly templated now.
| 
| M	src/lib/Mathematics.h
|  
* commit 9e4af54443d21ea63a9b852598cfc2352c90ee50
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 5 19:57:25 2008 +0000
| 
|     fix the > 0 thanks yaroslav
| 
| M	src/classifier/svm/MultiClassSVM.h
|  
* commit f2ba423d59df792eb5d89510174a5471b69590c9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 19:15:48 2008 +0000
| 
|     documentation:
|     - Added 2 docstrings
|     lib/Mathematics:
|     - Fixed a compiler warning about 'comparison always true' when template type
|       is something unsigned.
| 
| M	src/classifier/svm/SVMSGD.h
| M	src/evaluation/PerformanceMeasures.h
| M	src/lib/Mathematics.h
|  
* commit 48429839b0ae7a956797e7b67fed0b247480ab4d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 17:58:54 2008 +0000
| 
|     documentation:
|     - Added an option --quiet to doxy2swig and applied the option to the Makefile
|       to quieten doxy2swig's output during compilation when everything is ok.
| 
| M	src/.doxy2swig.py
| M	src/Makefile
|  
* commit adf973044c11b0fdcfe9398fe1c16ab04a747f9a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 17:37:38 2008 +0000
| 
|     documentation:
|     - Added docstrings to items in lib/ which got somehow forgotten before the
|       release.
|     lib/Trie:
|     - Renamed one method mistakenly named set_weights_in_tree() to
|       get_weights_in_tree()
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/DynamicArray.h
| M	src/lib/Library.doxy
| M	src/lib/List.h
| M	src/lib/Mathematics.h
| M	src/lib/ShogunException.h
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/io.h
| M	src/lib/lapack.h
|  
* commit 548aca852ad3685cfa759d1d635b114a9dc9b42e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Feb 5 12:08:12 2008 +0000
| 
|     evaluation:
|     - Added new section 'evaluation' which includes a stub for its first member:
|       PerformanceMeasures
| 
| M	src/.generate_link_dependencies.py
| A	src/evaluation/Evaluation.doxy
| A	src/evaluation/Evaluation.i
| A	src/evaluation/PerformanceMeasures.cpp
| A	src/evaluation/PerformanceMeasures.h
| A	src/evaluation/PerformanceMeasures.i
|  
* commit 1df7fbe55e7f7e5fcb9066d71521f27bca772561
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 4 07:48:37 2008 +0000
| 
|     also allow for bias being disabled in ocas/sgd; add matlab test code, seems to
|     work, sgd and ocas deliver very similar objectives when run for many
|     iterations/low epsilon.
| 
| M	doc/doxygen/Doxyfile
| A	matlab/examples/svmsgd.m
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVMSGD.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 9f37297f3b6f76f9d042265b0ee488d6d03ff8e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 4 06:24:07 2008 +0000
| 
|     add tests and examples for SGD
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/testcases/classifier.py
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVMSGD.cpp
| M	src/classifier/svm/SVMSGD.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
| A	testsuite/data/classifier/SVMSGD_0017_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_023_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_15_1_1e-05_True.m
| A	testsuite/data/classifier/SVMSGD_30_16_00001_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_00001_True.m
| A	testsuite/data/classifier/SVMSGD_30_1_1e-05_True.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit e72b7fb01eda8ceb6f30bcd60fd84b8628cb4506
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 22:22:37 2008 +0000
| 
|     add leon
| 
| M	src/CONTRIBUTIONS
|  
* commit 5271b4a7a797b4dd5d3a73bb3903c4423a46c69d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 12:26:23 2008 +0000
| 
|     add SGD and extend mathmatics/sparse features with a number of helpers
| 
| A	src/classifier/svm/SVMSGD.cpp
| A	src/classifier/svm/SVMSGD.h
| A	src/classifier/svm/SVMSGD.i
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/features/SparseFeatures.h
| M	src/lib/Mathematics.h
|  
* commit 808d3ad383cf5e1dd67385a7218f892c01d49849
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 3 10:55:28 2008 +0000
| 
|     set PYTHONPATH and PYTHON on make tests, for this test_all.sh was modified to
|     execute $PYTHON
| 
| M	python-modular/testcases/test_all.sh
| M	src/Makefile
|  
* commit 9f2074579d77a31de793b91d3ee39e43c579f9f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:31:08 2008 +0000
| 
|     Preparing for new Release shogun_0.5.0
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	doc/doxygen/Doxyfile
| M	src/ChangeLog
|  
* commit 795c74c778bd8bf104837fe1f14a280adaee93f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:08:29 2008 +0000
| 
|     Apply patch from Yaroslav Halchenko to inherit show_progress
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 03d97d2abdf26ae146cc461209d7d8e7da51bc99
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 18:00:38 2008 +0000
| 
|     err, now that is black magic.
| 
| A	testsuite/data/kernel/Poly_4_6_0_8_3_FK_True_False_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_4_6_0_8_3_TOP_True_False_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_6_0_3_FK_False_True_01_1_CUBE_1_False.m
| D	testsuite/data/kernel/Poly_6_0_3_TOP_False_True_01_1_CUBE_1_False.m
|  
* commit 77406565981c8449cf10d98a45768a45c73139de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 17:54:36 2008 +0000
| 
|     four examples for HMM
| 
| M	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
|  
* commit dcef0d132f84b49d3be962e73ab87ad0d4fcfe4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 17:53:56 2008 +0000
| 
|     use different test files for TOP/FK
| 
| M	doc/doxygen/Doxyfile
| M	testsuite/data/kernel/AUC_15_Gaussian_10.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/kernel.py
|  
* commit 9a5eacc11b81cf9b074353edfd048f875d64cc1a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 16:12:46 2008 +0000
| 
|     testsuite:
|     - Testcases for unavailable regressions (like SVR Light) or classifiers (like
|       SVM Light) are not generated/tested anymore
| 
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/regression.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/regression.py
|  
* commit 988a9322a7cfd2acbbdb68458b1fda77a64c8439
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 15:43:52 2008 +0000
| 
|     fix crasher when feature ``matrix'' is not existent, copy HMM model parameters in CHMM(CHMM* h)
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/features/SimpleFeatures.h
|  
* commit 13c77caeb1cccc9f63cd2429f7e49773593dc226
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 15:05:55 2008 +0000
| 
|     examples:
|     - Added examples for HMM and TOP/FKFeatures on PolyKernel
|     testsuite:
|     - Cosmetic fixes
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/distribution.py
| A	testsuite/data/distribution/HMM_4_60_6_3_0_1e-10_False_CUBE_1.m
| D	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/distribution.py
|  
* commit 3dc4667cd16b493c73ec0ec384c0426da903aae9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 14:08:49 2008 +0000
| 
|     testsuite:
|     - Replaced kernel Linear by Poly which delivers better normalization and
|       lesser problems with precision of floats (to be addressed later)
| 
| M	python-modular/testcases/kernel.py
| D	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| D	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| A	testsuite/data/kernel/Poly_6_0_3_FK_False_True_01_1_CUBE_1_False.m
| A	testsuite/data/kernel/Poly_6_0_3_TOP_False_True_01_1_CUBE_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit 4bc25a6902a25cc6a618e1de031a161b203e2834
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 2 12:29:02 2008 +0000
| 
|     built shogun for all interfaces, fixed minor warning for octave
| 
| M	src/gui/Octave.cpp
|  
* commit a192b43b30bd5cf9da812897445706b9d608a3de
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Feb 2 11:05:38 2008 +0000
| 
|     testsuite:
|     - Made accuracy of SVRs dependent on epsilon (like SVM a few commits before)
| 
| M	doc/doxygen/Doxyfile
| M	python-modular/testcases/regression.py
| M	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| M	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| M	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| M	testsuite/generator/regression.py
|  
* commit 2a9a18fdb38a524df63b622d3c947633b35391c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:53:21 2008 +0000
| 
|     add prior line search to test case runner: there must be still a bug in this as
|     re-running the generator always produces the same output
| 
| M	python-modular/testcases/kernel.py
|  
* commit 1c7dedfdbc2af62a2eda9836e07c3aefc2833a68
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:49:14 2008 +0000
| 
|     for FK do prior estimation on training data and reuse prior for testing
| 
| M	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| M	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| M	testsuite/generator/kernel.py
|  
* commit d2befbce88d717057f1b10ef1b93c88bc33d43c5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:47:59 2008 +0000
| 
|     - INCREF HMM models when inserted into TOP/FK Features.
|     - limit linesearch for prior to 1e-6 ... 1-1e-6
|     - Fix warning in dynamic array
|     - random initialization of random number generator
| 
| M	src/features/FKFeatures.cpp
| M	src/features/TOPFeatures.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/Mathematics.h
|  
* commit 11357e228ca03e4f6651b1822c2a0d89c94e4081
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 21:00:17 2008 +0000
| 
|     fix tests for HMM (reduce accuracy to 1e-6)
| 
| M	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/config.py
|  
* commit a15d005daf8103563d8fbd7252e4434cea1a5210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 20:56:04 2008 +0000
| 
|     regenerating examples fixes clustering tests
| 
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
|  
* commit d80704a02e9f033d106a4bd5f829cbcd846672b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 20:42:20 2008 +0000
| 
|     hopefully fix HMM derivative enumeration and automagically fill in version number in Doxyfile
| 
| M	src/Makefile
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/lib/Mathematics.h
|  
* commit baf2d6d4bccea8b43a47a9e7621d99812ad48a8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 19:11:57 2008 +0000
| 
|     fix missing random number generator initialization for cube
| 
| M	testsuite/generator/dataop.py
|  
* commit caae941ff0904e57e1ccb46414426bd825ce76db
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 15:16:38 2008 +0000
| 
|     testsuite:
|     - Implementd constant seeding for Shogun's random number generator for all
|       testcases and test generation, hence quite an update on the data files
| 
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/test_one.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_0017_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_023_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_15_15_1.m
| A	testsuite/data/classifier/GPBTSVM_001_1e-05_Linear_30_15_1.m
| D	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/GPBTSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/GPBTSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| D	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| D	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVMOneClass_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| D	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| D	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/LibSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/LibSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/MPDSVM_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/MPDSVM_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| A	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_0001_00001_Linear_30_15_16.m
| D	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_001_00001_Linear_30_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_0017_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_023_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_15_15_1.m
| A	testsuite/data/classifier/SVMLight_001_1e-05_Linear_30_15_1.m
| D	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_0001_00001_Gaussian_30_16.m
| A	testsuite/data/classifier/SVMLight_15_001_00001_Gaussian_30_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_0017_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_023_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_15_1.m
| A	testsuite/data/classifier/SVMLight_15_001_1e-05_Gaussian_30_1.m
| D	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| D	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_42.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3_42.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| A	testsuite/data/kernel/AUC_15_Gaussian_10.m
| D	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_FK_1_False.m
| A	testsuite/data/kernel/Linear_10_6_01_0_CUBE_3_TOP_1_False.m
| D	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_FK_1_False.m
| D	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_TOP_1_False.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| M	testsuite/data/preproc/NormOne_Gaussian_12.m
| M	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| M	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| M	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| M	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| M	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_0017_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_023_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_023_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_15_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_15_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/LibSVR_30_16_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/LibSVR_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/LibSVR_30_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_16_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_1_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_001_00001_1_15.m
| D	testsuite/data/regression/LibSVR_30_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_0017_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_0017_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_023_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_023_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_15_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_15_Gaussian_001_1e-05_1_15.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_0001.m
| A	testsuite/data/regression/SVRLight_30_1_15_00001_Gaussian_001.m
| A	testsuite/data/regression/SVRLight_30_1_15_1e-05_Gaussian_001.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_0001_00001_1_15.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_001_00001_1_15.m
| D	testsuite/data/regression/SVRLight_30_Gaussian_001_1e-05_1_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 7d308b7db43d1278e21a0b99d31b3a15785d36a9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:33:18 2008 +0000
| 
|     distribution:
|     - Previous SG_UNREFing was too aggressive...
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit 773e6afc3346b3680ce9fa05500f790d693d279e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:15:05 2008 +0000
| 
|     distribution:
|     - Hopefully fixed some issues with refcounting
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit 4567a997f216d1ed7799d1bb9f822c17dd2fe7b4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 14:04:18 2008 +0000
| 
|     testsuite:
|     - Removed cruft from old testing system
|     - Renamed scripts to make their purpose more obvious
| 
| D	python-modular/testcases/run.sh
| D	python-modular/testcases/test.py
| A	python-modular/testcases/test_all.sh
| A	python-modular/testcases/test_one.py
| D	python-modular/testcases/test_references.py
|  
* commit eb866fe702912e0dcdfa942e8ee9f54502ba3612
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 13:55:37 2008 +0000
| 
|     testsuite:
|     - This might be the right intermediary infrastructure to integrate
|       TOP/FKFeatures. Tests still fail, though.
| 
| M	python-modular/testcases/kernel.py
| A	testsuite/data/kernel/Chi2_10_12.m
| D	testsuite/data/kernel/Chi2_10_Real_12.m
| D	testsuite/data/kernel/CommUlongString_2_60_0_False_DNA_StringUlong_3_False.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/CommWordString_2_60_0_False_DNA_StringWord_3_False.m
| A	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/Const_230.m
| D	testsuite/data/kernel/Const_230_Real.m
| A	testsuite/data/kernel/Diag_230.m
| D	testsuite/data/kernel/Diag_230_Real.m
| A	testsuite/data/kernel/Distance_CanberraMetric_17.m
| D	testsuite/data/kernel/Distance_CanberraMetric_Real_17.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA_StringChar.m
| A	testsuite/data/kernel/GaussianShift_1_2_13.m
| D	testsuite/data/kernel/GaussianShift_1_2_Real_13.m
| A	testsuite/data/kernel/Gaussian_13.m
| D	testsuite/data/kernel/Gaussian_Real_13.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE_Byte.m
| A	testsuite/data/kernel/LinearString_60_DNA.m
| D	testsuite/data/kernel/LinearString_60_DNA_StringChar.m
| A	testsuite/data/kernel/LinearWord.m
| D	testsuite/data/kernel/LinearWord_Word.m
| A	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_FK_1_False.m
| A	testsuite/data/kernel/Linear_10_6_1e-10_0_CUBE_3_TOP_1_False.m
| D	testsuite/data/kernel/Linear_10_FK.m
| D	testsuite/data/kernel/Linear_10_Real.m
| D	testsuite/data/kernel/Linear_10_TOP.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA_StringChar.m
| A	testsuite/data/kernel/PolyMatchWord_3_False.m
| D	testsuite/data/kernel/PolyMatchWord_3_False_Word.m
| A	testsuite/data/kernel/PolyMatchWord_3_True.m
| D	testsuite/data/kernel/PolyMatchWord_3_True_Word.m
| A	testsuite/data/kernel/Poly_False_3_False.m
| D	testsuite/data/kernel/Poly_False_3_False_Real.m
| A	testsuite/data/kernel/Poly_False_3_True.m
| D	testsuite/data/kernel/Poly_False_3_True_Real.m
| A	testsuite/data/kernel/Poly_True_3_False.m
| D	testsuite/data/kernel/Poly_True_3_False_Real.m
| A	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/Poly_True_3_True_Real.m
| A	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_07_10_05_Real.m
| A	testsuite/data/kernel/Sigmoid_13_10_11.m
| D	testsuite/data/kernel/Sigmoid_13_10_11_Real.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5_StringChar.m
| A	testsuite/data/kernel/SparseGaussian_13.m
| D	testsuite/data/kernel/SparseGaussian_SparseReal_13.m
| A	testsuite/data/kernel/SparseLinear_10.m
| D	testsuite/data/kernel/SparseLinear_10_SparseReal.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_SparseReal_True.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/WeightedCommWordString_2_60_0_False_DNA_StringWord_3_False.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA_StringChar.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_StringChar.m
| A	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/kernel/WordMatch_3_Word.m
| M	testsuite/generator/kernel.py
|  
* commit 9a72e60d064d37651e40792b18fa2397472e2c03
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Feb 1 11:50:36 2008 +0000
| 
|     testsuite:
|     - accuracy for SVMs now depends on epsilon. the way of doing this does not fit
|       neatly into the testsuite configuration system, though. needs to be
|       reworked.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| M	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| M	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| M	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| M	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| M	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/generator/classifier.py
|  
* commit 47933b905fa4b14b0b7d08afc9a4fbe0ce9cff40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:59:42 2008 +0000
| 
|     add assertions in FKFeatures too and minor docu fix for TOP Features
| 
| M	src/features/FKFeatures.cpp
| M	src/features/TOPFeatures.h
|  
* commit c06fcb4b9cc7a532bed1ecc08309f8d1319936f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:16:13 2008 +0000
| 
|     use some more fancy verbatim formatting
| 
| M	src/base/Documentation.mainpage
|  
* commit 6349f4446d2f82280ef4ed3613697198e71ab201
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 09:15:51 2008 +0000
| 
|     disable (confusing!) collaboration graphs
| 
| M	doc/doxygen/Doxyfile
|  
* commit 777b7de1fee356a7fcfd632122893f16e363621f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 08:49:02 2008 +0000
| 
|     update contributions, and add some user documentation
| 
| M	src/CONTRIBUTIONS
| A	src/base/Documentation.mainpage
|  
* commit 33cf300b388ecdc60f06d4399938c5244a0af31f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 08:48:37 2008 +0000
| 
|     include some images, don't generate a latex/pdf documentation anymore
| 
| M	doc/doxygen/Doxyfile
| A	doc/doxygen/MatlabDemo.png
| A	doc/doxygen/OctaveDemo.png
| A	doc/doxygen/PythonDemo.png
| A	doc/doxygen/RDemo.png
| A	doc/doxygen/shogun_logo.png
|  
* commit 84213e7b1642ea172ed825c12f1626cbff777c96
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 07:16:02 2008 +0000
| 
|     add a make doc target
| 
| M	src/Makefile
|  
* commit ac0a1d4e40e327599b26fdcac0fbea692d2c3915
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 1 07:15:46 2008 +0000
| 
|     doxygen documentation now does not inline the source code and ignores swig and
|     gui/guilib when generating docu. also add a shogun footer linking to HP
| 
| M	doc/doxygen/Doxyfile
| A	doc/doxygen/shogun_footer.html
|  
* commit f6b5122a9204f53d8a14dc008fa7dea8498155d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 20:07:04 2008 +0000
| 
|     argh, really fix warnings (and fix cleverly introduced build errors)
| 
| M	src/features/TOPFeatures.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SparsePolyKernel.cpp
|  
* commit e9ad063cd5e1bee793ca3db02207db7a1d8794d2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 31 19:54:28 2008 +0000
| 
|     testsuite:
|     - Added testcase generation for TOP/FKFeatures in kernel Linear. This reverts
|       the previous assumption that each kernel can only work on one specific
|       feature type and hence the testsuite has to be reworked in that regard.
| 
| M	python-modular/testcases/kernel.py
| M	src/features/TOPFeatures.h
| D	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Chi2_10_Real_12.m
| A	testsuite/data/kernel/CommUlongString_2_60_0_False_DNA_StringUlong_3_False.m
| D	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_2_60_0_False_DNA_StringWord_3_False.m
| D	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Const_230_Real.m
| D	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Diag_230_Real.m
| D	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/Distance_CanberraMetric_Real_17.m
| D	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA_StringChar.m
| D	testsuite/data/kernel/GaussianShift_1_2_13.m
| A	testsuite/data/kernel/GaussianShift_1_2_Real_13.m
| D	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/Gaussian_Real_13.m
| D	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE_Byte.m
| D	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearString_60_DNA_StringChar.m
| D	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/LinearWord_Word.m
| D	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/Linear_10_FK.m
| A	testsuite/data/kernel/Linear_10_Real.m
| A	testsuite/data/kernel/Linear_10_TOP.m
| D	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA_StringChar.m
| D	testsuite/data/kernel/PolyMatchWord_3_False.m
| A	testsuite/data/kernel/PolyMatchWord_3_False_Word.m
| D	testsuite/data/kernel/PolyMatchWord_3_True.m
| A	testsuite/data/kernel/PolyMatchWord_3_True_Word.m
| D	testsuite/data/kernel/Poly_False_3_False.m
| A	testsuite/data/kernel/Poly_False_3_False_Real.m
| D	testsuite/data/kernel/Poly_False_3_True.m
| A	testsuite/data/kernel/Poly_False_3_True_Real.m
| D	testsuite/data/kernel/Poly_True_3_False.m
| A	testsuite/data/kernel/Poly_True_3_False_Real.m
| D	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/Poly_True_3_True_Real.m
| D	testsuite/data/kernel/Sigmoid_07_10_05.m
| A	testsuite/data/kernel/Sigmoid_07_10_05_Real.m
| D	testsuite/data/kernel/Sigmoid_13_10_11.m
| A	testsuite/data/kernel/Sigmoid_13_10_11_Real.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5_StringChar.m
| D	testsuite/data/kernel/SparseGaussian_13.m
| A	testsuite/data/kernel/SparseGaussian_SparseReal_13.m
| D	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparseLinear_10_SparseReal.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_SparseReal_True.m
| D	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| A	testsuite/data/kernel/WeightedCommWordString_2_60_0_False_DNA_StringWord_3_False.m
| D	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA_StringChar.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_StringChar.m
| D	testsuite/data/kernel/WordMatch_3.m
| A	testsuite/data/kernel/WordMatch_3_Word.m
| M	testsuite/generator/kernel.py
|  
* commit aee1078bb54967256cfd19c474d4302cc80d81d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 19:06:24 2008 +0000
| 
|     fix many warnings and add assertions for TOP features
| 
| M	src/features/TOPFeatures.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 941609bc7685ef432e164ffc8d91e0f45af5b4d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 10:18:58 2008 +0000
| 
|     update NEWS, authors, liblinear to 1.22
| 
| M	src/.authors
| M	src/NEWS
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/features/TOPFeatures.h
|  
* commit 5e52b70ae24a0f0c1e2cb8ec8909e70db9acff22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 31 06:01:03 2008 +0000
| 
|     remove ;
| 
| M	src/kernel/SalzbergWordKernel.cpp
|  
* commit 1cd53cf91d415f78714e9c7464c225430abd5024
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 30 16:11:01 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in kernel/
| 
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.doxy
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.h
|  
* commit 5f6ca972115e60d342f78cdeb11349de8e9eeb6e
| Author: Alexander Binder <alexander.binder@tu-berlin.de>
| Date:   Wed Jan 30 15:58:22 2008 +0000
| 
|     in Chi2Kernel::compute() checking for d!=0 before dividing by d, note: the case d==0 is common for using this kernel with sparse histograms
| 
| M	src/kernel/Chi2Kernel.cpp
|  
* commit 7dcaaf7ba87b2d53fded0bda4f4a2705cf274b66
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 29 14:29:16 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in preproc/
| 
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.doxy
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
|  
* commit 8c067c49d9e87c81891e70971e33daf8dbbed4e4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 18:57:20 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in regression/
| 
| M	src/regression/KRR.h
| M	src/regression/Regression.doxy
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit e96016f31cb011642d652085246ea3323b4d7680
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 18:22:41 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in structure/
| 
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
| M	src/structure/Structure.doxy
|  
* commit a469955cf770e56896e4832262766998b4a349d1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 28 14:30:16 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in features/
| 
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.h
| M	src/features/Features.doxy
| M	src/features/Features.h
| M	src/features/Labels.h
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
|  
* commit 18c62f56bd960409c43d6b2ea54a64697ba59df3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 23:12:50 2008 +0000
| 
|     testsuite:
|     - call of test generator (./generate_testcases.py) now supports arguments to
|       run one or more modules (or none for all).
| 
| M	testsuite/generate_testdata.py
| M	testsuite/generator/__init__.py
|  
* commit 78cea2249774bb1960ffc4d8887c17118c39580c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 19:40:22 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in distribution/
| 
| M	src/distributions/Distribution.doxy
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.h
|  
* commit 80295961856ef72d9ab6800813a7c33c898d6ffa
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 13:20:08 2008 +0000
| 
|     documentation:
|     - Added docstrings to anything touched by doxygen in distance/
| 
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.h
| M	src/distance/Distance.doxy
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.h
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
|  
* commit b4c1c53bb481f365624ed3ae36a5402939f57fac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Jan 27 11:22:38 2008 +0000
| 
|     documentation:
|      Added docstrings to anything touched by doxygen in clustering/
| 
| M	src/clustering/Clustering.doxy
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
|  
* commit 4f695ded231177780689d55192f2b1ca3187cd25
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 25 19:43:11 2008 +0000
| 
|     documentation
|     - Fix for doxy2swig's handling of the tag parametername when it has got a
|       child tag
| 
| M	src/.doxy2swig.py
|  
* commit 2c5eac53b8e8509cd438fddafca70c1895ca3188
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 25 19:32:54 2008 +0000
| 
|     documentation
|     - Added docstrings to anything touched by doxygen in classifer/
| 
| M	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/ssl.h
|  
* commit ed9e6b81d0ae3b870b9596cfc752628ceaf96dbd
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 24 18:41:08 2008 +0000
| 
|     documentation:
|     - Added many docstrings to quieten doxygen, more to come.
| 
| M	src/classifier/svm/SVM.h
| M	src/distributions/hmm/HMM.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.h
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/structure/DynProg.h
|  
* commit 08cf3c3f05603a41b9c46b2991f13fe9bd84977d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 16:27:06 2008 +0000
| 
|     lib:
|     - Enabled proper handling of {en,dis}able_progress from within static
|       functions (hopefully)
| 
| M	src/lib/io.h
|  
* commit 4422d724fd34ba106a70ae41138e947753f04c9d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 23 15:38:43 2008 +0000
| 
|     fixed typo.
| 
| M	src/base/Version.h
|  
* commit e6393e18afbbb57af7f914189f0e312e0feacfbf
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 15:16:49 2008 +0000
| 
|     classifier:
|     - KNN now uses SG_PROGESS instead of SG_PRINT
| 
| M	src/classifier/KNN.cpp
|  
* commit 5f8503ceb1da72f63354aaff375faf961154d2c0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 23 12:06:22 2008 +0000
| 
|     The big license switch to GPL v3 and copyright switch to 2008
| 
| M	doc/manual/introduction.txt
| M	doc/manual/license.txt
| M	src/LICENSE
| M	src/NEWS
| M	src/README
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVMMultiClass.cpp
| M	src/classifier/svm/LibSVMMultiClass.h
| M	src/classifier/svm/LibSVMOneClass.cpp
| M	src/classifier/svm/LibSVMOneClass.h
| M	src/classifier/svm/MPDSVM.cpp
| M	src/classifier/svm/MPDSVM.h
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/configure
| M	src/distance/CanberraMetric.cpp
| M	src/distance/CanberraMetric.h
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/ChebyshewMetric.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/GeodesicMetric.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/JensenMetric.cpp
| M	src/distance/JensenMetric.h
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/ManhattanMetric.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/MinkowskiMetric.cpp
| M	src/distance/MinkowskiMetric.h
| M	src/distance/RealDistance.h
| M	src/distance/SimpleDistance.h
| M	src/distance/SparseDistance.h
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/regression/KRR.cpp
| M	src/regression/KRR.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit 670550ac86c3ad33f13a6ed3e018fa48bbb66964
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 11:50:57 2008 +0000
| 
|     fix inverted meaning
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 8e4fd5320a823087180c304fa89e29eae1eff2ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 11:45:50 2008 +0000
| 
|     disable -> show_progress
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit f87b814e5d36df0b6d18cb9103b48b5e295b449e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 23 07:31:42 2008 +0000
| 
|     option to disable progress and to get number of svms for multiclass svm
| 
| M	src/classifier/svm/MultiClassSVM.h
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 5ae77d3d517229098a111fb026877ecb70419f53
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 22 15:43:36 2008 +0000
| 
|     documentation:
|     - Include a script to scrub the autogenerated python documentation, i.e.
|       replacing DREAL by float, in the make process
| 
| A	src/.scrub_docstrings.py
| M	src/Makefile
|  
* commit 9c57ccb443057fdf8fed05a115bec603634b1cad
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 14:46:21 2008 +0000
| 
|     documentation:
|     - Use swig feature "autodoc" "0" to prevent occurrence of types in function
|       arguments
|     - Use swig feature "autodoc" "docstring" to have correct doc for typemapped
|       functions
| 
| M	src/classifier/Classifier.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/clustering/Clustering.i
| M	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/LinearHMM.i
| M	src/features/Alphabet.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/DynProg.i
|  
* commit 43b4a2e1e63ca284bf71ca3bc1c7edce7f3d968f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 11:42:54 2008 +0000
| 
|     documentation:
|     - Adjusted Makefile to use doxy2swig with option --no-function-definition
| 
| M	src/Makefile
|  
* commit cc0ab7422fb6d5958a57dfb3d7b574a5413f60d7
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 11:22:59 2008 +0000
| 
|     documentation:
|     - Bugfix for new option include_function_definition
| 
| M	src/.doxy2swig.py
|  
* commit 2a667605714f37c0e8159f00e6ff2127cff5c4b0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 21 10:00:44 2008 +0000
| 
|     documentation:
|     - Updated doxy2swig.py from
|       http://www.aero.iitb.ac.in/~prabhu/software/code/python/
| 
| M	src/.doxy2swig.py
|  
* commit 4d90cf6c86df4684c1820c85c32333e71e0df58d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 18 15:57:16 2008 +0000
| 
|     testsuite:
|     - First stab at TOPFeatures, not working yet.
| 
| M	testsuite/generator/kernel.py
|  
* commit 1954ceb556693311fbc60af69e8d6aefa0adfe08
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 17 15:12:33 2008 +0000
| 
|     distribution/HMM:
|     - Added some (commented) print statements for debugging
|     - Got rid of compiler warning due to call of parent class' constructor at the
|       wrong place
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
|  
* commit 0555c6f479ac561fe8e311ee22888d943cd989e8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 15 20:07:49 2008 +0000
| 
|     call constructor
| 
| M	src/distributions/hmm/HMM.cpp
|  
* commit b595cd9cae27ebd986ee8f7c063e7fa3b359eab4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 15 14:33:24 2008 +0000
| 
|     testsuite:
|     - Sorted namespace issues, python documentation should be clean now
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit 2262a0f011ab16b314be2d7a4bcb674644e2714e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 14 15:23:55 2008 +0000
| 
|     testsuite:
|     - Added docstrings to all functions
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/preproc.py
| M	testsuite/generator/regression.py
|  
* commit e560fc51031af616c8e09a4ba0faf1ace8787cfc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 13 00:51:09 2008 +0000
| 
|     changes for alt_splice mSplicer
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 9ddb1a5641d4dde921471e48cfe313a481b37575
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Jan 12 14:20:09 2008 +0000
| 
|     minor changes in argument processing
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 6b8abfacfd87bb431e327a03a3d83c20139c230e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 12 11:38:10 2008 +0000
| 
|     fix valgrind delete[] delete free mismatches triggered by python-modular testsuite
| 
| M	src/classifier/svm/SVM.h
| M	src/distance/Distance.cpp
| M	src/kernel/Kernel.cpp
|  
* commit a50ebd15a72ced4f4c2a876a8011f27a25dd0225
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 11 15:02:28 2008 +0000
| 
|     kernel:
|     - Converted tries of WeightedDegreeStringKernel to use dynamic memory
|       allocation
|     - WeighteddegreeStringKernel::set_max_mismatch() calls ::init() when
|       appropriate
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	testsuite/generator/__init__.py
|  
* commit 2e6b0c109a6624a4f3cdfc9b56a8233a3fd60044
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 11 12:44:54 2008 +0000
| 
|     distribution/testsuite:
|     - Some more tweaking of HMM, still unfinished
| 
| M	python-modular/testcases/distribution.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	src/distributions/hmm/HMM.cpp
| D	testsuite/data/distribution/HMM_1e-10_False_3_60_0_6_CUBE_1.m
| A	testsuite/data/distribution/HMM_60_6_3_0_4_1e-10_False_CUBE_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit 48bfb99d693642d55fc4a48ad44c0c666570e235
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 10 14:34:46 2008 +0000
| 
|     kernel:
|     - Fixed a little issue with memory created with new (now malloc) when being
|       free'd (from the outside)
| 
| M	src/kernel/Kernel.cpp
|  
* commit 446154f82d72770612481885dcb856f9399adb8e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Jan 10 14:18:01 2008 +0000
| 
|     kernel:
|     - Fixed memory/NaN issue with in test matrices in
|       {Salzberg,Histogram}WordKernel
| 
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
|  
* commit 4498eba4355ba1ce1d7968ecdd21c4f58f0a8d57
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 9 18:19:18 2008 +0000
| 
|     * fix crasher on clear sg :
|     
|     for some reason matlab newer shogun version reliably crashed on
|     <do things with sg> ; clear sg ; sg  ... fix the potentially stack overflow by
|     dynamically allocating memory for the random number generator.
|     
|     * fix warning in ocas
| 
| M	src/classifier/svm/libocas.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 197e5377f3a1aa40bc8e9f157c2bca98d16b096c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 9 14:52:49 2008 +0000
| 
|     classifier/kernel:
|     - Modified {Salzberg, Histogram}Word to use StringFeatures<WORD> and bugfixed
|       them a little, so that Shogun does not crash anymore.
|     - Constructor of PluginEstimate now uses default values for pseudos (as taken
|       from Distribution's constructor)
|     - Both kernels spit out nans and wierd test kernel matrices. Apparently, they
|       need more fixing
|     testsuite/examples:
|     - Integrated {Salzberg, Histogram}Word
| 
| M	python-modular/examples/all_kernels.py
| M	python-modular/testcases/kernel.py
| M	src/classifier/PluginEstimate.h
| M	src/features/StringFeatures.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| A	testsuite/data/kernel/HistogramWord_60_0_DNA_3_False.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/SalzbergWord_60_0_DNA_3_False.m
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit ab43a9c2d3c69f8962af3869524f07050a6b2b84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 8 14:35:24 2008 +0000
| 
|     distribution:
|     - Some more bits for a better HMM, unfortunately still incomplete due to yet
|       another road block (see mailing-list).
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
|  
* commit 9ff24a63df85d52b8314a8c711a4804dc508373d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 14:32:04 2008 +0000
| 
|     - fix crash in figuring out alphabet
|     - allow order 8 for wdocas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 3d9a3c17170c4bf8fb26ddadb856f9f2310575dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 13:28:54 2008 +0000
| 
|     fix compile error in python-modular interface
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 929a17449021b13b753e5fbc8df2b9f8cd8293a5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 8 08:53:18 2008 +0000
| 
|     update of libocas, fixes bug in linesearch
| 
| M	src/classifier/svm/libocas.cpp
|  
* commit 6c76ec5e91058d1fad5543320d0cbf9c5af177d0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Jan 7 10:17:46 2008 +0000
| 
|     testsuite:
|     - Some preparations for implementing {Salzberg,Histogram}WordKernel
| 
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit 84086aa08bdd5a4758ca75e4f7e5d9114b56e4d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 22:58:19 2008 +0000
| 
|     parallelize WDOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/libocas.cpp
|  
* commit a20597411f13c75a3338295d55a2071b6e783651
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 16:57:47 2008 +0000
| 
|     fix rarely occuring bug in libocas (vf)
| 
| M	src/classifier/svm/libocas.cpp
|  
* commit 583f9e7f28a2196997ee883dc77067a605eb9785
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 13:54:49 2008 +0000
| 
|     classifier:
|     - Silenced SubGradientSVM
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 97103922eb15f23b16fd159e9dea0a02fcd5fe9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 13:48:56 2008 +0000
| 
|     hopefully fix dependency building with gcc -MM -MT ...
| 
| M	src/Makefile
|  
* commit 864735d6064f2d3a3ccaee0efb9083e784219e1f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 13:36:42 2008 +0000
| 
|     distribution/examples:
|     - Modified Distribution::get_log_likelihood to be wrappable by swig
|     - Added this method to the examples for Distribution
| 
| M	python-modular/examples/all_distribution.py
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
|  
* commit e5c3aef987e1f9dbcf6946193146dada42799a95
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Jan 5 12:14:09 2008 +0000
| 
|     testsuite:
|     - Forgot to add SortUlongString preproc to UlongStringFeatures as default in
|       testcases which lead to errors in testing, because the generator actually
|       had added the preprocs
| 
| M	python-modular/testcases/util.py
|  
* commit 63141f1f6396f6d9b62428fd0827ec6685995862
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 5 10:29:28 2008 +0000
| 
|     * fix warning in linear hmm (cast num_symbols to int)
|     * fix loading of strings when lines are longer than 1MB
|     * add progress bar for linecounting and loading
| 
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/StringFeatures.h
|  
* commit dec7a0aedda906d4389529862dacec54044d32b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 4 23:40:52 2008 +0000
| 
|     add read_dna_file function to directly read in strings without having to transfer them from matlab or so
|     
|     example:
|     sg('set_features', 'TRAIN', 'dat.fa', 'DNABINFILE');
| 
| M	src/Makefile
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/common.h
|  
* commit 1f532a9a0c52467010e245c8355c0737a7b8f032
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 4 16:31:45 2008 +0000
| 
|     distribution:
|     - LinearHMM: Renamed hist to transition_probs
|     - Histogram: Moved get/set_histogram into .cpp
|     
|     classifier/testsuite/examples:
|     - Adjusted to changes above
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/classifier/PluginEstimate.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/LinearHMM.i
| M	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| M	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/distribution.py
|  
* commit 35ccae39c714cbefaabe640cc7cd09cba0a8bbec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Jan 4 12:23:40 2008 +0000
| 
|     testsuite:
|     - Jury-rigged random initialisation in clustering to produce constant values,
|       helped by yesterday's new init_random() in Mathematics
|     clustering:
|     - Fixed Hierarchical::get_merge_distance() and ::get_pairs() wrapped for swig
|       similarly to yesterday's fix of KMeans::get_radi() and ::get_centers()
| 
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	src/clustering/Hierarchical.h
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_42.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3_42.m
| M	testsuite/generator/clustering.py
|  
* commit a8a5105021b58ad8f88e234d9e516c9bf5bddd4a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 3 18:16:57 2008 +0000
| 
|     several fixes and enhancements caused by todays kodeaffe-questioning
| 
| M	matlab/examples/hmm.m
| M	src/clustering/KMeans.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/lib/Cache.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 7ada0ae93e9a4123d0275af7bf26f5d370bc5265
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 16:09:00 2008 +0000
| 
|     testsuite:
|     - featop.get_string_complex now adds preproc SortUlongString implicitely
|       where appropriate
| 
| M	python-modular/examples/all_kernels.py
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/preproc.py
|  
* commit 550039106488665266b8f8280f1904156f4cd807
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 15:56:49 2008 +0000
| 
|     testsuite:
|     - Added support for arguments in preproc instantiation
| 
| M	python-modular/testcases/preproc.py
| M	python-modular/testcases/util.py
| D	testsuite/data/preproc/PruneVarSubMean_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_False_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_True_12.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/preproc.py
|  
* commit 760b7ae529f546cab005cdbaf5dd195a735b10f1
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Jan 2 14:39:56 2008 +0000
| 
|     preproc:
|     - Obliterated {Real,Short,Word}PreProc
| 
| M	src/features/RealFileFeatures.cpp
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.i
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| D	src/preproc/RealPreProc.h
| D	src/preproc/RealPreProc.i
| D	src/preproc/ShortPreProc.cpp
| D	src/preproc/ShortPreProc.h
| D	src/preproc/ShortPreProc.i
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| D	src/preproc/WordPreProc.cpp
| D	src/preproc/WordPreProc.h
| D	src/preproc/WordPreProc.i
|  
* commit bc6da122bdcb233532cee55d5130a359a9c978b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Jan 1 12:24:05 2008 +0000
| 
|     testsuite/examples:
|     - Added preprocs
| 
| A	python-modular/examples/all_preproc.py
| A	python-modular/testcases/preproc.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| A	testsuite/data/preproc/LogPlusOne_Gaussian_12.m
| A	testsuite/data/preproc/NormOne_Gaussian_12.m
| A	testsuite/data/preproc/PruneVarSubMean_Gaussian_12.m
| A	testsuite/data/preproc/SortUlongString_2_CommUlongString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWordString_2_CommWordString_60_0_False_DNA_3_False.m
| A	testsuite/data/preproc/SortWord_LinearWord.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| A	testsuite/generator/preproc.py
|  
* commit 910bedeaccbde17363433cfb8280a531d5fd0876
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Dec 30 22:59:37 2007 +0000
| 
|     fix error in header file (gcc 4.3 reports this as error multiple parameters named 'posweights_lhs')
| 
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 73f9dfb1f494b18d191cfedeadc437a45a9dca45
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 29 13:38:03 2007 +0000
| 
|     kernel:
|     - Made a few little improvements in WeightedDegreeStringKernel wrt
|       set_max_mismatch()
| 
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 35b2263c061a8659a036f7162eb269b86dd81ef6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 27 16:09:34 2007 +0000
| 
|     distribution:
|     - kind of integrated HMM into testsuite; a few things unclear yet, hence no
|       updated examples.
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| A	testsuite/data/distribution/HMM_1e-10_False_3_60_0_6_CUBE_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
|  
* commit 37d84825f36b37895246cd6d94b2e912216055fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 22:39:03 2007 +0000
| 
|     bugfix
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 4ac9412cecd4d42cff59ec938730f7995eb002d4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 20:27:55 2007 +0000
| 
|     traverse data dimension wise, to reduce cache hits. speeds up output
|     computation by factor 3. however it requires data to be transposed(!!!)
|     
|     ...debugging
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 5994425aef3689e7767dfb43ca7583c2d1a3a9e2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 17:22:32 2007 +0000
| 
|     dyn alloc things
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/lib/Mathematics.h
|  
* commit 8831baf1f61555bf794c4922012f2d21eab9f376
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 22 05:29:26 2007 +0000
| 
|     adding code to figure out why computing output to wd ocas is slow (95% is spend
|     in computing output) - as expected the random access to w is the cause. we need
|     to use the batch computation idea to minimize cache misses. still this
|     implementation is 2 times faster than svm light w/ linadd
| 
| M	src/classifier/svm/WDSVMOcas.cpp
|  
* commit 102627db6c7ee4bb0792ed65d268cbb2e8564c61
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 21 15:03:48 2007 +0000
| 
|     kernel:
|     - Added some get/set functions to WeightedDegreeStringKernel to reestablish
|       functionality lost through changes in the constructors a few commits before
| 
| A	matlab/testcases/WeightedDegreeString.m
| M	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_wd_kernel.m
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	testsuite/generator/__init__.py
|  
* commit c405fbf15381620e964adfdda8a870892473b53e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 11:04:20 2007 +0000
| 
|     fix timing, minor tuning
| 
| M	matlab/examples/test_ocas_normalization.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
|  
* commit 7fd723804438ace1ffb145be607a2c1bf1eb8455
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 10:14:00 2007 +0000
| 
| M	matlab/examples/test_wdocas.m
|  
* commit 9cabefa427debce13afa4fd7fa1621245f40788f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 10:04:53 2007 +0000
| 
|     output timing statistics
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit b90dc7b6eb4c077e13fd19d14fbdcdb50ee92c9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 21 09:05:06 2007 +0000
| 
|     updated to new ocas
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
|  
* commit 70f777f38b7109937eff55fc4aa37ef8c3fdb88e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 23:33:28 2007 +0000
| 
|     seems to work now - the meaning of epsilon is really completely different so
|     don't expect a solution even close to svmlight...
| 
| A	matlab/examples/test_ocas_normalization.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 85f4a00cd83586992e4e568dc7b8f55c052fec42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 17:55:23 2007 +0000
| 
|     - fix parts of WD kernel (broken since ABI change)
|     - debugging WDSVMOcas
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit e2928e97da72cf648b528f668730e5a9d688cbe8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 20 16:02:57 2007 +0000
| 
|     guilib:
|     - Forgot to adapt PluginEstimate in guilib
| 
| M	src/guilib/GUIPluginEstimate.cpp
|  
* commit efc9f8bb9b6c3448c55449da4eec474a21231e21
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 20 15:59:12 2007 +0000
| 
|     distribution:
|     - Converted LinearHMM from WordFeatures to StringFeatures<WORD>
|     - Swapped arguments in Histogram::get_log_derivative to match the order in
|       LinearHMM and Distribution
|     - Renamed param_num to num_param in Distribution
|     classifier:
|     - Adapted PluginEstimate accordingly to changes in LinearHMM
|     testsuite/examples:
|     - Adapted accordingly to changes in LinearHMM/Histogram
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| D	testsuite/data/distribution/Histogram_False_60_-inf_0_148615665552_DNA_3.m
| A	testsuite/data/distribution/Histogram_False_60_0_DNA_3.m
| A	testsuite/data/distribution/LinearHMM_False_60_0_DNA_3.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
|  
* commit 757d64ae7159f5a2a2acc17850731082faa1fa91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 15:16:19 2007 +0000
| 
|     introduce WD kernel normalization const
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit 7e03e4b1296b0008f13a6afae7c4e80018c01fef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 20 14:08:36 2007 +0000
| 
|     finally a working WDOCAS
| 
| A	matlab/examples/test_wdocas.m
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/common.h
|  
* commit 8c7242015df3d08a6fda28b20ec13b0a2ed4d63e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 19 15:26:09 2007 +0000
| 
|     distribution:
|     - Extended Histogram to get/set histogram from outside
|     - Converted Histogram from WordFeatures to StringFeatures<WORD>
|     - Misc little fixed in Histogram
|     - Renamed get_log_likelihood_all_examples to get_log_likelihood in
|       Distribution
|     testsuite/examples:
|     - Changed test for Histogram accordingly
|     clustering:
|     - Fixed typo in doc-string of Clustering.i
| 
| M	python-modular/examples/all_distribution.py
| M	python-modular/testcases/distribution.py
| M	src/clustering/Clustering.i
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/Distribution.i
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/histogram/Histogram.i
| D	testsuite/data/distribution/Histogram.m
| A	testsuite/data/distribution/Histogram_False_60_-inf_0_148615665552_DNA_3.m
| M	testsuite/generator/config.py
| M	testsuite/generator/distribution.py
|  
* commit ea064c15b22ea7a81b0696d7dfa5ebf8c8c3723a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 19 12:21:02 2007 +0000
| 
|     wdocas needs bytefeatures, adjust interfaces
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit b349e00bb3e89a26dac04ab30b6e05a2f91bb2c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 19 11:48:07 2007 +0000
| 
|     tuned WDSVM based on OCAS
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
|  
* commit def75a93633d8cb32bd61608f4119387b71844f6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 16:55:22 2007 +0000
| 
|     kernel:
|     - Fix instantiation of WeightedDegreeString in guilib
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit 193a3aeb819e298fc099bc55aa134fb36d36e631
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 16:48:33 2007 +0000
| 
|     testsuite:
|     - Got rid of ugly params/data confusion (which changed most files due to items
|       swapping lines and stuff)
|     examples:
|     - New matplotlibdir recveived svn:ignores
| 
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/distribution.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_0017_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_023_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_15_1_1e-05_True.m
| D	testsuite/data/classifier/LibLinear_30_16_00001.m
| A	testsuite/data/classifier/LibLinear_30_16_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_00001_True.m
| D	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_30_1_1e-05_True.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_0017_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_023_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_15_1_1e-05_True.m
| D	testsuite/data/classifier/SVMLin_30_16_00001.m
| A	testsuite/data/classifier/SVMLin_30_16_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_00001_True.m
| D	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_30_1_1e-05_True.m
| A	testsuite/data/classifier/SVMOcas_0017_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_023_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_15_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| D	testsuite/data/classifier/SVMOcas_30_00001_1.m
| D	testsuite/data/classifier/SVMOcas_30_00001_16.m
| A	testsuite/data/classifier/SVMOcas_30_16_00001_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_00001_False.m
| A	testsuite/data/classifier/SVMOcas_30_1_1e-05_False.m
| D	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| D	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_16_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_00001_False.m
| D	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05_False.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| D	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| D	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| D	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/KRR_Gaussian_16_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1e-05_15.m
| A	testsuite/data/regression/KRR_Gaussian_1_1e-06_15.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_0017_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_023_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_15_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_16_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_0001_00001_1_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_001_00001_1_15.m
| A	testsuite/data/regression/LibSVR_30_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_0017_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_023_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_15_Gaussian_001_1e-05_1_15.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_0001_00001_1_15.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_001_00001_1_15.m
| A	testsuite/data/regression/SVRLight_30_Gaussian_001_1e-05_1_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit d8ade6309b57ecfd83691bfb5f6993361237c0af
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 18 12:11:05 2007 +0000
| 
|     testsuite/examples:
|     - Non kernel/distance-based classifiers now classify on test data (not train)
|     - Label creation has been put into module dataop
|     - Classifiers now operate on data organised in clouds (but shuffled)
|     - run.sh is a bit more verbose in case of ERROR
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/util.py
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_30_16_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_16.m
| M	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/regression.py
|  
* commit cdbd03836e0e12475c1b610317c1edf2d804009f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 17:27:33 2007 +0000
| 
|     examples:
|     - Moved examples using matplotlib into subdirectory
|     - Added button to quit
|     - Set window title for known toolkits (QT, GTK, TK)
| 
| A	python-modular/examples/matplotlib/multiple_smvs.py
| A	python-modular/examples/matplotlib/numpy_krr.py
| A	python-modular/examples/matplotlib/numpy_krr_sinc.py
| A	python-modular/examples/matplotlib/numpy_lda.py
| A	python-modular/examples/matplotlib/numpy_svm.py
| A	python-modular/examples/matplotlib/numpy_svmlin.py
| A	python-modular/examples/matplotlib/numpy_svr_sinc.py
| A	python-modular/examples/matplotlib/util.py
| D	python-modular/examples/multiple_svms_matplotlib.py
| D	python-modular/examples/numpy_krr_matplotlib.py
| D	python-modular/examples/numpy_krr_sinc.py
| D	python-modular/examples/numpy_lda_matplotlib.py
| D	python-modular/examples/numpy_svm_matplotlib.py
| D	python-modular/examples/numpy_svmlin_matplotlib.py
| D	python-modular/examples/numpy_svr_sinc.py
|  
* commit 245ef0318b0f2d527d0ceadf9ca5940ae1b9f080
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 16:35:34 2007 +0000
| 
|     testsuite/examples:
|     - More or less replaced rows by num_feats and cols/len_{train,test} by num_vec
|       which hopefully makes it easier to understand the differences in row/column
|       vector handling of shogun and python.
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/examples/all_distance.py
| M	python-modular/examples/all_distribution.py
| M	python-modular/examples/all_kernels.py
| M	python-modular/examples/all_regression.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/kernel.py
|  
* commit fc83c73f67d850b64fee91782ae13a762b931d7f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 11:56:53 2007 +0000
| 
|     testsuite:
|     - Included fixed Perceptron in testsuite
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/testcases/classifier.py
| A	testsuite/data/classifier/Perceptron_1_01_1000.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
|  
* commit af42f7d691b266df532216652669e150e08cb9fc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 17 11:35:38 2007 +0000
| 
|     clustering:
|     - Implemented overload functions for get_merge_distance and get_pairs in
|       Hierarchical, so it can be picked up bei swig.
|     testsuite:
|     - Modified testing for clustering entities accordingly.
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_clustering.py
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/test.py
| M	src/clustering/Hierarchical.h
| M	src/clustering/Hierarchical.i
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/generator/clustering.py
| M	testsuite/generator/dataop.py
|  
* commit a0aa680e7e46ed6b6051315a27f5df4fdc81444e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 16:50:34 2007 +0000
| 
|     kernel:
|     - Cleanup in constructors of WeightedDegreeStringKernel
|     testsuite/examples:
|     - Adjusted to aforementioned changes
| 
| M	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_kernels.py
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreeString_30_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| D	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| D	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
| M	testsuite/generator/kernel.py
|  
* commit 453ef849ffd91ce5165c75769842816c3d69fe84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 16:18:06 2007 +0000
| 
|     classifier:
|     - Renamed MPD.*, LibSVM_* to file names corresponding to their class name
|     - Adjusted a few accuracies for testing
| 
| M	src/classifier/Classifier.i
| A	src/classifier/svm/LibSVMMultiClass.cpp
| A	src/classifier/svm/LibSVMMultiClass.h
| A	src/classifier/svm/LibSVMMultiClass.i
| A	src/classifier/svm/LibSVMOneClass.cpp
| A	src/classifier/svm/LibSVMOneClass.h
| A	src/classifier/svm/LibSVMOneClass.i
| D	src/classifier/svm/LibSVM_multiclass.cpp
| D	src/classifier/svm/LibSVM_multiclass.h
| D	src/classifier/svm/LibSVM_multiclass.i
| D	src/classifier/svm/LibSVM_oneclass.cpp
| D	src/classifier/svm/LibSVM_oneclass.h
| D	src/classifier/svm/LibSVM_oneclass.i
| D	src/classifier/svm/MPD.cpp
| D	src/classifier/svm/MPD.h
| D	src/classifier/svm/MPD.i
| A	src/classifier/svm/MPDSVM.cpp
| A	src/classifier/svm/MPDSVM.h
| A	src/classifier/svm/MPDSVM.i
| M	src/classifier/svm/MultiClassSVM.i
| M	src/guilib/GUIClassifier.cpp
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/generator/config.py
|  
* commit 4632a40699b7a566454fdbd13bc06a14f25577e5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 15:40:46 2007 +0000
| 
|     distance:
|     - Added switch to disable sqrt in EuclidianDistance
|     - Added example for NormSquared accordingly
|     - Also added different lengths of feature vectors for some distances in
|       examples
| 
| M	python-modular/examples/all_distance.py
| M	src/distance/EuclidianDistance.cpp
| M	src/distance/EuclidianDistance.h
|  
* commit 940a3200533019fbeee9a47869a3e5a117e90e86
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 15:08:21 2007 +0000
| 
|     kernel/distance:
|     - Removed unnecessary variable ialen
| 
| M	src/distance/CanberraMetric.cpp
| M	src/distance/ChebyshewMetric.cpp
| M	src/distance/JensenMetric.cpp
| M	src/distance/ManhattanMetric.cpp
| M	src/distance/MinkowskiMetric.cpp
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/SigmoidKernel.cpp
|  
* commit b5485e18b488773f0994026728c8c87a9a596742
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 14:18:36 2007 +0000
| 
|     testsuite:
|     - Fixed a stupid error due to misunderstanding how imports work in Python
|       which lead to a segfaulting WeightedDegreeStringKernel (which misses a
|       trival check in a non-trivial way at the right place).
| 
| M	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| M	testsuite/data/classifier/LibLinear_30_16_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_00001.m
| M	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| M	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| M	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| M	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| M	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| M	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| M	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| M	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| M	testsuite/data/classifier/SVMLin_30_16_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_00001.m
| M	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| M	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_1.m
| M	testsuite/data/classifier/SVMOcas_30_00001_16.m
| M	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
| M	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| M	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit 6e3db00684b7f60694a84f897ca74421a2512aac
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:43:36 2007 +0000
| 
|     testsuite:
|     - Removed bias from regressions' filename.
| 
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0981348453653.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0872955309592.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0279247000531.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_-00175691471516.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_-00175691471516.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_-00174108665466.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_-00174108665466.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0981348845665.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0872954970759.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0279247449222.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_-00175689131529.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_-00174106346562.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_-00174106346562.m
| M	testsuite/generator/fileop.py
|  
* commit f136ffaf6d76547cd62f653a21111fb072baf099
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:41:28 2007 +0000
| 
|     testsuite:
|     - Hopefully found a way to keep the 'randomly' generated data more constant,
|       so that the generated testdata files do not change so much
| 
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| M	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| M	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| M	testsuite/data/kernel/Sigmoid_07_10_05.m
| M	testsuite/data/kernel/Sigmoid_13_10_11.m
| M	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| M	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| M	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| M	testsuite/data/kernel/WordMatch_3.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0981348453653.m
| D	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0982464339006.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0872955309592.m
| D	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0888053020484.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0279247000531.m
| D	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0325130341179.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_-00175691471516.m
| D	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_-00175691471516.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_-00174108665466.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_0101668800597.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_-00174108665466.m
| D	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_0101668800597.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0981348845665.m
| D	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0982464813435.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0872954970759.m
| D	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0888053358235.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0279247449222.m
| D	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0325130597187.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_-00175689131529.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_0102593610898.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_-00174106346562.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_0101669344133.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_-00174106346562.m
| D	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_0101669344133.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataop.py
|  
* commit f44ded14efd046c6f3f80afa11795491039c6d0c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 16 12:04:12 2007 +0000
| 
|     distance:
|     - Removed unnecessary assertion if vectors of lhs and rhs have same length
|     testsuite:
|     - Adapted DNA features to have different lengths in train and test
| 
| M	src/distance/HammingWordDistance.cpp
| M	testsuite/data/distance/CanberraMetric.m
| M	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| M	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
|  
* commit e6066e71e1a960f5f601f48da0af928fb32bcc92
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 21:19:38 2007 +0000
| 
|     start OCAS variant tuned to training low order WD kernel SVMs
| 
| M	src/classifier/svm/WDSVMOcas.cpp
| M	src/classifier/svm/WDSVMOcas.h
| M	src/classifier/svm/WDSVMOcas.i
| M	src/guilib/GUIClassifier.cpp
|  
* commit e30026b839f1b5b9a7c1d96a2e981d19bd3411b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 18:25:10 2007 +0000
| 
|     various fixes based on sebastians many questions
| 
| M	python-modular/examples/all_classifier.py
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/clustering/KMeans.i
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/GeodesicMetric.cpp
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Labels.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit c26c819f16515a5a5eab044233ee878706ae6946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 14:39:18 2007 +0000
| 
|     now the *final* nice correctly set props
| 
| M	Makefile
|  
* commit 3a71c9fff0d58bf63910801687464040efce9ab6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 14 14:17:06 2007 +0000
| 
|     ignore '*doxygen_xml' '*_wrap.h' '*_wrap.cxx' '*.so' '*_doxygen.i' '.depend' '.config' 'tags'
| 
| M	src/classifier/Classifier.h
| M	src/classifier/Classifier.i
| A	src/classifier/svm/WDSVMOcas.cpp
| A	src/classifier/svm/WDSVMOcas.h
| A	src/classifier/svm/WDSVMOcas.i
| M	src/lib/common.h
|  
* commit 62939478dfece09ced2be0f820ad2fa831d2bf84
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 11:02:45 2007 +0000
| 
|     python-modular:
|     - Added examples for all regressions
|     - Removed old regression example
| 
| A	python-modular/examples/all_regression.py
| D	python-modular/examples/krr.py
|  
* commit bed916794f3f7c2f72d229adffde252a408a08c0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 10:45:24 2007 +0000
| 
|     python-modular:
|     - Added examples for all distribution
| 
| A	python-modular/examples/all_distribution.py
|  
* commit dcdb16607736365d144b03d2dcc3f1fcefb0b3fb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 10:08:19 2007 +0000
| 
|     python-modular:
|     - Added examples for all distance
| 
| A	python-modular/examples/all_distance.py
|  
* commit a2fe7c0d8aa802eff69ecb38a7c77208fae1f46a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Dec 13 09:46:07 2007 +0000
| 
|     python-modular:
|     - Added examples for all clustering
| 
| M	python-modular/examples/all_classifier.py
| A	python-modular/examples/all_clustering.py
| M	python-modular/examples/all_kernels.py
|  
* commit 7321c1e94f1679553e45ae2ab57a5055de649afc
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 16:10:42 2007 +0000
| 
|     testsuite: Found terminator for SubGradientSVM and added the SVM.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| A	testsuite/data/classifier/SubGradientSVM_05_0017_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_023_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_15_1_1e-05.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_16_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_00001.m
| A	testsuite/data/classifier/SubGradientSVM_05_30_1_1e-05.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit bd5141307b543593a9ca29b2a4867a26aa1f2623
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 15:40:03 2007 +0000
| 
|     python-modular:
|     - Added examples for all classifiers
|     - Removed old classifier (and omitted kernel) examples
| 
| A	python-modular/examples/all_classifier.py
| M	python-modular/examples/all_kernels.py
| D	python-modular/examples/combined_features_svm.py
| D	python-modular/examples/lda.py
| D	python-modular/examples/multiple_svms.py
| D	python-modular/examples/numpy_svm.py
| D	python-modular/examples/spectrum_kernel.py
| D	python-modular/examples/svm_lin.py
| D	python-modular/examples/wd_kernel_svm.py
| D	python-modular/examples/wd_kernel_svm_linadd_batch.py
|  
* commit 561740e8172ebc7431de8cc7e314e46ce13bcb53
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 14:56:24 2007 +0000
| 
|     testsuite/LibSVMOneClass: Extended LibSVMOneClass' constructor and added the
|     SVM to testuite.
| 
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| M	testsuite/data/classifier/LDA_1_01.m
| A	testsuite/data/classifier/LibSVMOneClass_0017_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_023_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_15_1_Gaussian_001_1e-05_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_16_Gaussian_0001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_0001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_00001_15.m
| A	testsuite/data/classifier/LibSVMOneClass_30_1_Gaussian_001_1e-05_15.m
| M	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| M	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| M	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| M	testsuite/data/distribution/Histogram.m
| M	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| M	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| M	testsuite/generator/classifier.py
|  
* commit 9aa6a46b4aa6715a9c1d410d7a418ffce9970423
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 13:53:42 2007 +0000
| 
|     testsuite: Added missing classifier LDA.
| 
| M	python-modular/testcases/classifier.py
| M	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/LDA_1_01.m
| M	testsuite/generator/classifier.py
| M	testsuite/generator/config.py
|  
* commit c9df0c243c8d148233782ee7301b6f4daa4e9447
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 12 12:39:06 2007 +0000
| 
|     python-modular:
|     - Added examples for all kernels
|     - Removed old kernel examples
| 
| A	python-modular/examples/all_kernels.py
| D	python-modular/examples/custom_kernel.py
| D	python-modular/examples/rbf_kernel.py
| D	python-modular/examples/wd_kernel.py
| D	python-modular/examples/wds_kernel.py
| D	python-modular/examples/weighted_spectrum_kernel.py
|  
* commit 2f58b05c84a935cdf2e091eac073fca7abf4a6ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 12 09:23:41 2007 +0000
| 
|     fix warning in matlab interface
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit c072454edff7b3f3b9310e65c7f14a1408b6daec
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 16:44:29 2007 +0000
| 
|     testsuite: Ran through pychecker and pylint.
| 
| M	python-modular/testcases/classifier.py
| M	python-modular/testcases/clustering.py
| M	python-modular/testcases/distance.py
| M	python-modular/testcases/distribution.py
| M	python-modular/testcases/kernel.py
| M	python-modular/testcases/regression.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/dataop.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/featop.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit e6e5202a23ff9ca0b51a7b50740ef2cbdbb7f649
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 12:53:01 2007 +0000
| 
|     testsuite: Moved 'enum' with types into config.py.
| 
| M	testsuite/generator/classifier.py
| M	testsuite/generator/clustering.py
| M	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| M	testsuite/generator/regression.py
|  
* commit 11422e1c1c915c3c755db2a14cb8fc712238702f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Dec 11 12:07:46 2007 +0000
| 
|     testsuite: Merged various lists into one module and made some cosmetic
|     changes.
| 
| M	testsuite/generator/__init__.py
| M	testsuite/generator/classifier.py
| D	testsuite/generator/classifierlist.py
| M	testsuite/generator/clustering.py
| D	testsuite/generator/clusteringlist.py
| A	testsuite/generator/config.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/distribution.py
| D	testsuite/generator/distributionlist.py
| D	testsuite/generator/dlist.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| D	testsuite/generator/klist.py
| M	testsuite/generator/regression.py
| D	testsuite/generator/regressionlist.py
|  
* commit 35f7583723dcaa1ff227f2a9e77b3911f4994cf4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 17:24:23 2007 +0000
| 
|     Added support for regressions to testsuite.
|     Found a memory allocation bug in SVRLight when using multiple threads, but did
|     not find a way to fix it yet.
| 
| A	python-modular/testcases/regression.py
| M	python-modular/testcases/test.py
| A	testsuite/data/regression/KRR_16_Gaussian_1e-05_15.m
| A	testsuite/data/regression/KRR_1_Gaussian_1e-05_15.m
| A	testsuite/data/regression/KRR_1_Gaussian_1e-06_15.m
| A	testsuite/data/regression/LibSVR_0017_15_1_Gaussian_001_1e-05_-0982464339006.m
| A	testsuite/data/regression/LibSVR_023_15_1_Gaussian_001_1e-05_-0888053020484.m
| A	testsuite/data/regression/LibSVR_15_15_1_Gaussian_001_1e-05_-0325130341179.m
| A	testsuite/data/regression/LibSVR_30_15_16_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_0001_00001_0102593062421.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_00001_0101668800597.m
| A	testsuite/data/regression/LibSVR_30_15_1_Gaussian_001_1e-05_0101668800597.m
| A	testsuite/data/regression/SVRLight_0017_15_1_Gaussian_001_1e-05_-0982464813435.m
| A	testsuite/data/regression/SVRLight_023_15_1_Gaussian_001_1e-05_-0888053358235.m
| A	testsuite/data/regression/SVRLight_15_15_1_Gaussian_001_1e-05_-0325130597187.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_0001_00001_0102593610898.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_00001_0101669344133.m
| A	testsuite/data/regression/SVRLight_30_15_1_Gaussian_001_1e-05_0101669344133.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/fileop.py
| A	testsuite/generator/regression.py
| A	testsuite/generator/regressionlist.py
|  
* commit b96d1900505b6c59eda578129e2518b8b1fcc337
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 14:46:06 2007 +0000
| 
|     Some cleanups for clustering in testsuite.
| 
| M	python-modular/testcases/clustering.py
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3.m
| D	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_1.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3.m
| D	testsuite/data/clustering/KMeans_EuclidianDistance_3_1.m
| M	testsuite/generator/clustering.py
|  
* commit a32ff379f2039c2fbb391fdf8c0cc5eabed07d5a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 14:38:13 2007 +0000
| 
|     Added support for distributions in testsuite, but again, dunno yet how to test
|     properly.
|     Fixed erroneous delete statement in HMM's destructor.
| 
| A	python-modular/testcases/distribution.py
| M	python-modular/testcases/test.py
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/HMM.cpp
| A	testsuite/data/distribution/HMM_10_1_60_2_DNA.m
| A	testsuite/data/distribution/Histogram.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/distribution.py
| A	testsuite/generator/distributionlist.py
| M	testsuite/generator/fileop.py
|  
* commit bcc8523bedc6f3c03c041e0158cf39fa8732f894
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 10 12:53:11 2007 +0000
| 
|     Added support for clustering in testsuite. But since classify() returns NULL,
|     dunno yet what to test for.
| 
| A	python-modular/testcases/clustering.py
| M	python-modular/testcases/test.py
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| A	testsuite/data/clustering/Hierarchical_EuclidianDistance_3_1.m
| A	testsuite/data/clustering/KMeans_EuclidianDistance_3_1.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/clustering.py
| A	testsuite/generator/clusteringlist.py
| M	testsuite/generator/fileop.py
|  
* commit 0bfbb5c13205caa6aacd87342c7d3ee6417c0597
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 9 11:08:41 2007 +0000
| 
|     Fixed a few compile issues with CustomKernel.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
|  
* commit ae6309c33efde3cc053e8096f61344987670c331
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 8 14:24:31 2007 +0000
| 
|     Added testdata files for classifiers.
| 
| A	testsuite/data/classifier/GMNPSVM_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_16_0001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_0001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_00001_Gaussian.m
| A	testsuite/data/classifier/GMNPSVM_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/GPBTSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_15_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_16_Linear_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_0001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_00001.m
| A	testsuite/data/classifier/GPBTSVM_30_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/GPBTSVM_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/KNN_EuclidianDistance_1_3.m
| A	testsuite/data/classifier/LibLinear_0017_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_023_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_15_1_1e-05.m
| A	testsuite/data/classifier/LibLinear_30_16_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_00001.m
| A	testsuite/data/classifier/LibLinear_30_1_1e-05.m
| A	testsuite/data/classifier/LibSVMMultiClass_0017_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_023_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_15_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_16_0001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_0001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_00001_Gaussian.m
| A	testsuite/data/classifier/LibSVMMultiClass_30_15_1_001_1e-05_Gaussian.m
| A	testsuite/data/classifier/LibSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/LibSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/LibSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/MPDSVM_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/MPDSVM_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_0017_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_0017_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_023_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_023_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_15_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_30_15_16_Gaussian_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_16_Linear_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Gaussian_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_0001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_00001.m
| A	testsuite/data/classifier/SVMLight_30_15_1_Linear_001_1e-05.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_16_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_16_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_16_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_0001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_00001_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommUlongString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_0017_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_023_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_15_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_CommWordString_False_2_30_1_False_DNA_3.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_0017_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_023_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_15_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_0_WeightedDegreeString_30_1_3_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_0017_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_023_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_15_1_20_DNA.m
| A	testsuite/data/classifier/SVMLight_60_001_1e-05_WeightedDegreePositionString_30_1_20_DNA.m
| A	testsuite/data/classifier/SVMLin_0017_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_023_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_15_1_1e-05.m
| A	testsuite/data/classifier/SVMLin_30_16_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_00001.m
| A	testsuite/data/classifier/SVMLin_30_1_1e-05.m
| A	testsuite/data/classifier/SVMOcas_0017_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_023_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_15_1e-05_1.m
| A	testsuite/data/classifier/SVMOcas_30_00001_1.m
| A	testsuite/data/classifier/SVMOcas_30_00001_16.m
| A	testsuite/data/classifier/SVMOcas_30_1e-05_1.m
|  
* commit 8adc842cc2edaae33f9286fedcdafddd56116342
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Dec 8 14:23:40 2007 +0000
| 
|     What started out to be an addition of classifiers Perceptron and KNN to the
|     testsuite became a slightly bigger change. And since many testdata files have
|     changed, svm was renamed to classifier to have even more changed files.
| 
| A	python-modular/testcases/classifier.py
| M	python-modular/testcases/distance.py
| M	python-modular/testcases/kernel.py
| M	python-modular/testcases/run.sh
| D	python-modular/testcases/svm.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/util.py
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/CanberraWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distance/ChebyshewMetric.m
| M	testsuite/data/distance/EuclidianDistance.m
| M	testsuite/data/distance/GeodesicMetric.m
| M	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_True_DNA_3.m
| D	testsuite/data/distance/HammingWordDistance_60_0_True_False_DNA_3.m
| M	testsuite/data/distance/JensenMetric.m
| M	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanWordDistance_60_0_False_DNA_3.m
| D	testsuite/data/distance/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distance/MinkowskiMetric_13.m
| M	testsuite/data/distance/SparseEuclidianDistance.m
| M	testsuite/data/kernel/AUC_Gaussian_10_15.m
| M	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_3_10_60_LinearString_FixedDegreeString_10_True_3_DNA_DNA_60_PolyMatchString_60_10_DNA.m
| D	testsuite/data/kernel/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| M	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/Const_230.m
| M	testsuite/data/kernel/Custom_7.m
| M	testsuite/data/kernel/Diag_230.m
| M	testsuite/data/kernel/Distance_CanberraMetric_17.m
| M	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernel/GaussianShift_1_13_2.m
| A	testsuite/data/kernel/GaussianShift_1_2_13.m
| M	testsuite/data/kernel/Gaussian_13.m
| M	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| M	testsuite/data/kernel/LinearString_60_DNA.m
| M	testsuite/data/kernel/LinearWord.m
| M	testsuite/data/kernel/Linear_10.m
| M	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| M	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| M	testsuite/data/kernel/PolyMatchWord_3_False.m
| M	testsuite/data/kernel/PolyMatchWord_3_True.m
| M	testsuite/data/kernel/Poly_False_3_False.m
| M	testsuite/data/kernel/Poly_False_3_True.m
| M	testsuite/data/kernel/Poly_True_3_False.m
| M	testsuite/data/kernel/Poly_True_3_True.m
| D	testsuite/data/kernel/Sigmoid_05_07_10.m
| A	testsuite/data/kernel/Sigmoid_07_10_05.m
| D	testsuite/data/kernel/Sigmoid_11_13_10.m
| A	testsuite/data/kernel/Sigmoid_13_10_11.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_7_DNA_5.m
| D	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| M	testsuite/data/kernel/SparseGaussian_13.m
| M	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparsePoly_3_10_True_True.m
| D	testsuite/data/kernel/SparsePoly_3_True_True_10.m
| M	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| M	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_0_DNA_20.m
| D	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_0.m
| M	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/svm/GMNPSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_16_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/GPBTSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_00001_15_30_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_0017_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_023_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_15_30_001_Linear.m
| D	testsuite/data/svm/GPBTSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/LibLinear_16_00001_30.m
| D	testsuite/data/svm/LibLinear_1_00001_30.m
| D	testsuite/data/svm/LibLinear_1_1e-05_0017.m
| D	testsuite/data/svm/LibLinear_1_1e-05_023.m
| D	testsuite/data/svm/LibLinear_1_1e-05_15.m
| D	testsuite/data/svm/LibLinear_1_1e-05_30.m
| D	testsuite/data/svm/LibSVMMultiClass_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVMMultiClass_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/LibSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/MPDSVM_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_16_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/SVMLight_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_16_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_16_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_16_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_00001_15_30_0001_Linear.m
| D	testsuite/data/svm/SVMLight_1_00001_15_30_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_0017_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_023_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_0017_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_023_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_15_30_001_Linear.m
| D	testsuite/data/svm/SVMLight_1_1e-05_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_0001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_0017_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_023_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_00001_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommWordString_False_1e-05_3_False_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_0001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_0001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_023_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_15_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
| D	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_1e-05_20_DNA.m
| D	testsuite/data/svm/SVMLin_16_00001_30.m
| D	testsuite/data/svm/SVMLin_1_00001_30.m
| D	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| D	testsuite/data/svm/SVMLin_1_1e-05_023.m
| D	testsuite/data/svm/SVMLin_1_1e-05_15.m
| D	testsuite/data/svm/SVMLin_1_1e-05_30.m
| D	testsuite/data/svm/SVMOcas_16_00001_30.m
| D	testsuite/data/svm/SVMOcas_1_00001_30.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_0017.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_023.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_15.m
| D	testsuite/data/svm/SVMOcas_1_1e-05_30.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/classifier.py
| A	testsuite/generator/classifierlist.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/fileop.py
| M	testsuite/generator/kernel.py
| D	testsuite/generator/svm.py
| D	testsuite/generator/svmlist.py
|  
* commit 81aef037e9d423305b73b3f890567992a656cfa8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 7 11:53:48 2007 +0000
| 
|     Forgot to implement bias handling in test for Linear SVMs.
| 
| M	python-modular/testcases/svm.py
| M	testsuite/data/svm/LibLinear_16_00001_30.m
| M	testsuite/data/svm/LibLinear_1_00001_30.m
| M	testsuite/data/svm/LibLinear_1_1e-05_0017.m
| M	testsuite/data/svm/LibLinear_1_1e-05_023.m
| M	testsuite/data/svm/LibLinear_1_1e-05_15.m
| M	testsuite/data/svm/LibLinear_1_1e-05_30.m
| M	testsuite/data/svm/SVMLin_16_00001_30.m
| M	testsuite/data/svm/SVMLin_1_00001_30.m
| M	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| M	testsuite/data/svm/SVMLin_1_1e-05_023.m
| M	testsuite/data/svm/SVMLin_1_1e-05_15.m
| M	testsuite/data/svm/SVMLin_1_1e-05_30.m
| M	testsuite/generator/svmlist.py
|  
* commit 80d918e89659664447af9e0cf07cf8678bea9588
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Dec 7 11:40:35 2007 +0000
| 
|     - Added testing support for Linear SVMs SubGradientSVM (defunct), SVMOcas,
|       SVMLin, LibLinear.
|     - Dropped bias from test files' filenames which might result in fewer
|       filename fluctuation.
|     - Fixed a memory problem in LocalAlignmentStringKernel found through valgrind
|       when investigating another issue.
| 
| M	python-modular/testcases/svm.py
| M	python-modular/testcases/util.py
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| A	testsuite/data/svm/GMNPSVM_16_00001_30_15_0001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/GMNPSVM_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/GMNPSVM_1_0017_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GMNPSVM_1_023_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GMNPSVM_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_1e-05_0017_15_001_Gaussian.m
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| A	testsuite/data/svm/GPBTSVM_16_00001_15_30_0001_Linear.m
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| D	testsuite/data/svm/GPBTSVM_1_15_0017_0966278485944_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_023_0543767751007_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_15_-132658839231_001_Linear_1e-05.m
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| D	testsuite/data/svm/GPBTSVM_1_15_30_-508687201949_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-508687312495_0001_Linear_00001.m
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| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_0017_001_Linear.m
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| A	testsuite/data/svm/GPBTSVM_1_1e-05_15_15_001_Linear.m
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| D	testsuite/data/svm/GPBTSVM_1_20_023_60_DNA_0817688815924_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_15_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_0001_WeightedDegreePositionString_00001.m
| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_00001.m
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| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_0887334331162.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0887334331162.m
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| A	testsuite/data/svm/SVMLight_1_00001_30_15_0001_Gaussian.m
| A	testsuite/data/svm/SVMLight_1_00001_30_15_001_Gaussian.m
| D	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0930833803377_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_0017_0966278487501_001_Linear_1e-05.m
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| D	testsuite/data/svm/SVMLight_1_15_15_-13265884307_001_Linear_1e-05.m
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| A	testsuite/data/svm/SVMLight_1_1e-05_15_15_001_Gaussian.m
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| D	testsuite/data/svm/SVMLight_1_20_023_60_DNA_081768879782_001_WeightedDegreePositionString_1e-05.m
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| A	testsuite/data/svm/SVMLight_1_2_60_0_001_15_CommWordString_False_1e-05_3_False_DNA.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_30_CommUlongString_False_00001_3_False_DNA.m
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| A	testsuite/data/svm/SVMLight_1_60_001_0017_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_0017_WeightedDegreePositionString_1e-05_20_DNA.m
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| A	testsuite/data/svm/SVMLight_1_60_001_023_WeightedDegreePositionString_1e-05_20_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_15_0_WeightedDegreeString_1e-05_3_DNA.m
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| A	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_00001_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_0_WeightedDegreeString_1e-05_3_DNA.m
| A	testsuite/data/svm/SVMLight_1_60_001_30_WeightedDegreePositionString_00001_20_DNA.m
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| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843298911743.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767270065.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943158120528.m
| A	testsuite/data/svm/SVMLin_16_00001_30.m
| A	testsuite/data/svm/SVMLin_1_00001_30.m
| A	testsuite/data/svm/SVMLin_1_1e-05_0017.m
| A	testsuite/data/svm/SVMLin_1_1e-05_023.m
| A	testsuite/data/svm/SVMLin_1_1e-05_15.m
| A	testsuite/data/svm/SVMLin_1_1e-05_30.m
| A	testsuite/data/svm/SVMOcas_16_00001_30.m
| A	testsuite/data/svm/SVMOcas_1_00001_30.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_0017.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_023.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_15.m
| A	testsuite/data/svm/SVMOcas_1_1e-05_30.m
| M	testsuite/generator/fileop.py
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit dc5b83c3738fbac234cb559707f73f600e660ac0
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Dec 5 16:27:27 2007 +0000
| 
|     Added tests for LibSVM[Multi|One]class and GMNPSVM. Something seems to be
|     wrong, though.
|     Fixed serious error in tester for SVMs.
| 
| M	python-modular/testcases/svm.py
| M	src/classifier/svm/MultiClassSVM.cpp
| A	testsuite/data/svm/GMNPSVM_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_00001.m
| A	testsuite/data/svm/GMNPSVM_1_30_15_00_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_16_15_30_-0821989185185_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_16_15_30_-508687312495_0001_Linear_00001.m
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| D	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_0246910045785_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
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| A	testsuite/data/svm/GPBTSVM_1_15_15_-132658839231_001_Linear_1e-05.m
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| A	testsuite/data/svm/GPBTSVM_1_15_15_0548915753829_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-065157463662_001_Linear_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_15_30_-22505370471_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_1_15_30_-508687201949_001_Linear_1e-05.m
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| D	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_-0274893902444_001_WeightedDegreePositionString_00001.m
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| A	testsuite/data/svm/GPBTSVM_1_20_30_60_DNA_00773056062963_001_WeightedDegreePositionString_1e-05.m
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| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0979802682552.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0887334266458.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00935648601231.m
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| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_0998303655915.m
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| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_106026905221.m
| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0019598758374.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0303225609186.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0992443037178.m
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| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_0931498798307.m
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| D	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0651825725233.m
| A	testsuite/data/svm/GPBTSVM_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_-0303223251273.m
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| A	testsuite/data/svm/GPBTSVM_1_30_15_-00613100758013_001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-00613132524843_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_-0484590141478_0001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_0261977403774_001_Gaussian_00001.m
| D	testsuite/data/svm/GPBTSVM_1_30_15_105204219268_001_Gaussian_1e-05.m
| D	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_-0831897511827.m
| A	testsuite/data/svm/GPBTSVM_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00688774205661.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_00943187331216.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0987462969743.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417792297.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0827255626261.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843299538078.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767939962.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0256947138336.m
| D	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_-0257746371493.m
| A	testsuite/data/svm/GPBTSVM_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943162018287.m
| A	testsuite/data/svm/LibSVMMultiClass_16_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_15_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVMMultiClass_1_30_15_00_001_Gaussian_1e-05.m
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| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0985710347358.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_0988417746545.m
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| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_0843298911743.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0102767270065.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0519380955627.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_00943158120528.m
| D	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_048071442276.m
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit 40b36533f91ce270c0282a63155a459b7545cc71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 16:36:06 2007 +0000
| 
|     Added tests for SVM_light/GPBT with kernels Linear/WD/WDS/Comm*.
|     Modified initialisation of shifts in WDS a bit (and hopefully did not
|     break it).
| 
| M	python-modular/testcases/svm.py
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| A	testsuite/data/svm/GPBTSVM_16_15_30_-0821989185185_0001_Linear_00001.m
| A	testsuite/data/svm/GPBTSVM_16_20_30_60_DNA_0246910045785_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_0921516131876.m
| A	testsuite/data/svm/GPBTSVM_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_0692485803483.m
| D	testsuite/data/svm/GPBTSVM_16_30_15_-044654010505_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_16_30_15_143346292372_0001_Gaussian_00001.m
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| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0793381114824.m
| A	testsuite/data/svm/SVMLight_16_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-0171196497471.m
| A	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_30_15_-027044286291_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_60_0001_WeightedDegreeString_0_00001_3_30_DNA_00823202476202.m
| M	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0917290490851_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_0017_0987963299797_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_023_-0771020268837_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0560907134726_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0658655872718_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_30_-0473459347507_001_Linear_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_30_-521501361299_001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_15_30_228357034322_0001_Linear_00001.m
| A	testsuite/data/svm/SVMLight_1_20_0017_60_DNA_0986853631926_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_023_60_DNA_0878874694523_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_15_60_DNA_069369756601_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_-0251060935602_001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_00900911532605_001_WeightedDegreePositionString_1e-05.m
| A	testsuite/data/svm/SVMLight_1_20_30_60_DNA_0102176441694_0001_WeightedDegreePositionString_00001.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommUlongString_False_00001_3_False_30_DNA_-0820755510649.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_0001_CommWordString_False_00001_3_False_30_DNA_-00586362747545.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_00001_3_False_30_DNA_00781655170826.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_0017_DNA_-100004058358.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_023_DNA_101134267787.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_15_DNA_109076167274.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommUlongString_False_1e-05_3_False_30_DNA_0404282354121.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_00001_3_False_30_DNA_-0304776480432.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_0017_DNA_-0998450395842.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_023_DNA_-086437759149.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_15_DNA_-0278906532595.m
| A	testsuite/data/svm/SVMLight_1_2_60_0_001_CommWordString_False_1e-05_3_False_30_DNA_000696653044183.m
| D	testsuite/data/svm/SVMLight_1_30_15_-00717753971131_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_00397728902548_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_143346298875_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_60_0001_WeightedDegreeString_0_00001_3_30_DNA_0431048148373.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_00001_3_30_DNA_0107756130204.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_0017_DNA_-0985710347358.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_023_DNA_-0842079863084.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_15_DNA_0519380955627.m
| A	testsuite/data/svm/SVMLight_1_60_001_WeightedDegreeString_0_1e-05_3_30_DNA_048071442276.m
| M	testsuite/generator/svm.py
| M	testsuite/generator/svmlist.py
|  
* commit 472126d80850b5c8660c3d9f2fe68409629479da
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 14:20:33 2007 +0000
| 
|     Included swig interface for MPDSVM in build process and added second
|     constructor to class.
|     Added tests for SMVs GPBTSVM, LibSVM, MPDSVM. Some values for
|     biases/alphas/support vectors seem to be a bit or completely out of bounds;
|     needs a fix.
| 
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/svm.py
| M	src/classifier/Classifier.i
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/MPD.i
| A	testsuite/data/svm/GPBTSVM_16_30_15_-044654010505_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_0017_15_-0982940693452_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_023_15_-0878671861347_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_15_15_-0164682491082_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_-013216554388_0001_Gaussian_00001.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_017611158143_001_Gaussian_1e-05.m
| A	testsuite/data/svm/GPBTSVM_1_30_15_0261977403774_001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_16_30_15_-0169960109781_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_0017_15_0983148282468_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_023_15_0960911423541_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_15_15_00768127665445_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_0367000497093_001_Gaussian_1e-05.m
| A	testsuite/data/svm/LibSVM_1_30_15_0540534077721_0001_Gaussian_00001.m
| A	testsuite/data/svm/LibSVM_1_30_15_105203502136_001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_16_30_15_-0246062468411_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_0017_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_023_15_00_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_15_15_116103114629_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-00404290801427_001_Gaussian_1e-05.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0132174299938_0001_Gaussian_00001.m
| A	testsuite/data/svm/MPDSVM_1_30_15_-0484445849989_001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_16_30_15_-027044286291_0001_Gaussian_00001.m
| M	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0917290490851_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0560907134726_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_-00717753971131_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_00397728902548_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| D	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| D	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_143346298875_0001_Gaussian_00001.m
| M	testsuite/generator/svm.py
| A	testsuite/generator/svmlist.py
|  
* commit 03db5a42adfb13ab1995225b2d5eac4b817e71f3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Dec 3 12:08:28 2007 +0000
| 
|     testsuite:
|     	- Refactored SVM into its own module.
|     	- Got rid of silly plural 's' in file/dir/module names.
| 
| A	python-modular/testcases/distance.py
| D	python-modular/testcases/distances.py
| A	python-modular/testcases/kernel.py
| D	python-modular/testcases/kernels.py
| M	python-modular/testcases/run.sh
| A	python-modular/testcases/svm.py
| M	python-modular/testcases/test.py
| A	testsuite/data/distance/CanberraMetric.m
| A	testsuite/data/distance/CanberraWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distance/ChebyshewMetric.m
| A	testsuite/data/distance/EuclidianDistance.m
| A	testsuite/data/distance/GeodesicMetric.m
| A	testsuite/data/distance/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distance/HammingWordDistance_60_0_True_False_DNA_3.m
| A	testsuite/data/distance/JensenMetric.m
| A	testsuite/data/distance/ManhattanMetric.m
| A	testsuite/data/distance/ManhattanWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distance/MinkowskiMetric_13.m
| A	testsuite/data/distance/SparseEuclidianDistance.m
| D	testsuite/data/distances/CanberraMetric.m
| D	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| D	testsuite/data/distances/ChebyshewMetric.m
| D	testsuite/data/distances/EuclidianDistance.m
| D	testsuite/data/distances/GeodesicMetric.m
| D	testsuite/data/distances/HammingWordDistance_60_0_False_False_DNA_3.m
| D	testsuite/data/distances/HammingWordDistance_60_0_True_False_DNA_3.m
| D	testsuite/data/distances/JensenMetric.m
| D	testsuite/data/distances/ManhattanMetric.m
| D	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| D	testsuite/data/distances/MinkowskiMetric_13.m
| D	testsuite/data/distances/SparseEuclidianDistance.m
| A	testsuite/data/kernel/AUC_Gaussian_10_15.m
| A	testsuite/data/kernel/Chi2_10_12.m
| A	testsuite/data/kernel/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| A	testsuite/data/kernel/CommUlongString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/CommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/Const_230.m
| A	testsuite/data/kernel/Custom_7.m
| A	testsuite/data/kernel/Diag_230.m
| A	testsuite/data/kernel/Distance_CanberraMetric_17.m
| A	testsuite/data/kernel/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernel/GaussianShift_1_13_2.m
| A	testsuite/data/kernel/Gaussian_13.m
| A	testsuite/data/kernel/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernel/LinearString_60_DNA.m
| A	testsuite/data/kernel/LinearWord.m
| A	testsuite/data/kernel/Linear_10.m
| A	testsuite/data/kernel/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernel/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernel/PolyMatchWord_3_False.m
| A	testsuite/data/kernel/PolyMatchWord_3_True.m
| A	testsuite/data/kernel/Poly_False_3_False.m
| A	testsuite/data/kernel/Poly_False_3_True.m
| A	testsuite/data/kernel/Poly_True_3_False.m
| A	testsuite/data/kernel/Poly_True_3_True.m
| A	testsuite/data/kernel/Sigmoid_05_07_10.m
| A	testsuite/data/kernel/Sigmoid_11_13_10.m
| A	testsuite/data/kernel/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| A	testsuite/data/kernel/SparseGaussian_13.m
| A	testsuite/data/kernel/SparseLinear_10.m
| A	testsuite/data/kernel/SparsePoly_3_True_True_10.m
| A	testsuite/data/kernel/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| A	testsuite/data/kernel/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernel/WeightedDegreeString_60_20_DNA_0.m
| A	testsuite/data/kernel/WordMatch_3.m
| D	testsuite/data/kernels/AUC_Gaussian_10_15.m
| D	testsuite/data/kernels/Chi2_10_12.m
| D	testsuite/data/kernels/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| D	testsuite/data/kernels/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/Const_230.m
| D	testsuite/data/kernels/Custom_7.m
| D	testsuite/data/kernels/Diag_230.m
| D	testsuite/data/kernels/Distance_CanberraMetric_17.m
| D	testsuite/data/kernels/FixedDegreeString_60_3_DNA.m
| D	testsuite/data/kernels/GaussianShift_1_13_2.m
| D	testsuite/data/kernels/Gaussian_13.m
| D	testsuite/data/kernels/LinearByte_60_RAWBYTE.m
| D	testsuite/data/kernels/LinearString_60_DNA.m
| D	testsuite/data/kernels/LinearWord.m
| D	testsuite/data/kernels/Linear_10.m
| D	testsuite/data/kernels/LocalAlignmentString_60_DNA.m
| D	testsuite/data/kernels/PolyMatchString_60_3_False_DNA.m
| D	testsuite/data/kernels/PolyMatchString_60_3_True_DNA.m
| D	testsuite/data/kernels/PolyMatchWord_3_False.m
| D	testsuite/data/kernels/PolyMatchWord_3_True.m
| D	testsuite/data/kernels/Poly_False_3_False.m
| D	testsuite/data/kernels/Poly_False_3_True.m
| D	testsuite/data/kernels/Poly_True_3_False.m
| D	testsuite/data/kernels/Poly_True_3_True.m
| D	testsuite/data/kernels/Sigmoid_05_07_10.m
| D	testsuite/data/kernels/Sigmoid_11_13_10.m
| D	testsuite/data/kernels/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| D	testsuite/data/kernels/SparseGaussian_13.m
| D	testsuite/data/kernels/SparseLinear_10.m
| D	testsuite/data/kernels/SparsePoly_3_True_True_10.m
| D	testsuite/data/kernels/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/WeightedDegreePositionString_60_20_DNA.m
| D	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| D	testsuite/data/kernels/WordMatch_3.m
| D	testsuite/data/kernels/svm_Gaussian_16_30_0001_-00252730695658_15_00001.m
| D	testsuite/data/kernels/svm_Gaussian_1_0017_001_-0984442849736_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_023_001_0800284844791_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_15_001_0482488626012_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_0001_-0496371444648_15_00001.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_001_-000101252233711_15_1e-05.m
| D	testsuite/data/kernels/svm_Gaussian_1_30_001_0659730916612_15_00001.m
| A	testsuite/data/svm/SVMLight_16_30_15_-0151559609532_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_0017_15_0994887715902_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_023_15_0772013875341_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_15_15_0129979727806_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0374551614297_0001_Gaussian_00001.m
| A	testsuite/data/svm/SVMLight_1_30_15_0382293280572_001_Gaussian_1e-05.m
| A	testsuite/data/svm/SVMLight_1_30_15_0829762948051_001_Gaussian_00001.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/dataop.py
| D	testsuite/generator/dataops.py
| A	testsuite/generator/distance.py
| D	testsuite/generator/distances.py
| A	testsuite/generator/featop.py
| D	testsuite/generator/featops.py
| A	testsuite/generator/fileop.py
| D	testsuite/generator/fileops.py
| A	testsuite/generator/kernel.py
| D	testsuite/generator/kernels.py
| A	testsuite/generator/svm.py
|  
* commit 094ebf7136ce1aa43a6e99910a696d4da181a398
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 13:49:39 2007 +0000
| 
|     Added suffix 'Metric' to the metric distances, extended their constructors to
|     accept features and added tests for them.
| 
| D	src/distance/Canberra.cpp
| D	src/distance/Canberra.h
| D	src/distance/Canberra.i
| A	src/distance/CanberraMetric.cpp
| A	src/distance/CanberraMetric.h
| A	src/distance/CanberraMetric.i
| D	src/distance/Chebyshew.cpp
| D	src/distance/Chebyshew.h
| D	src/distance/Chebyshew.i
| A	src/distance/ChebyshewMetric.cpp
| A	src/distance/ChebyshewMetric.h
| A	src/distance/ChebyshewMetric.i
| M	src/distance/Distance.i
| D	src/distance/Geodesic.cpp
| D	src/distance/Geodesic.h
| D	src/distance/Geodesic.i
| A	src/distance/GeodesicMetric.cpp
| A	src/distance/GeodesicMetric.h
| A	src/distance/GeodesicMetric.i
| D	src/distance/Jensen.cpp
| D	src/distance/Jensen.h
| D	src/distance/Jensen.i
| A	src/distance/JensenMetric.cpp
| A	src/distance/JensenMetric.h
| A	src/distance/JensenMetric.i
| D	src/distance/Manhattan.cpp
| D	src/distance/Manhattan.h
| D	src/distance/Manhattan.i
| A	src/distance/ManhattanMetric.cpp
| A	src/distance/ManhattanMetric.h
| A	src/distance/ManhattanMetric.i
| D	src/distance/Minkowski.cpp
| D	src/distance/Minkowski.h
| D	src/distance/Minkowski.i
| A	src/distance/MinkowskiMetric.cpp
| A	src/distance/MinkowskiMetric.h
| A	src/distance/MinkowskiMetric.i
| M	src/guilib/GUIDistance.cpp
| A	testsuite/data/distances/CanberraMetric.m
| A	testsuite/data/distances/ChebyshewMetric.m
| A	testsuite/data/distances/GeodesicMetric.m
| A	testsuite/data/distances/JensenMetric.m
| A	testsuite/data/distances/ManhattanMetric.m
| A	testsuite/data/distances/MinkowskiMetric_13.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
|  
* commit f0bc5b99a4f810b5bcdb3411cc3e53f13cc09614
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 12:09:00 2007 +0000
| 
|     Generalised function to collect output parameters in testdata generator (which
|     is followed by a change in some data files due to reordered python dicts).
| 
| M	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distances/EuclidianDistance.m
| A	testsuite/data/distances/HammingWordDistance_60_0_False_False_DNA_3.m
| A	testsuite/data/distances/HammingWordDistance_60_0_True_False_DNA_3.m
| D	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_False_3.m
| D	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_True_3.m
| M	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/data/kernels/AUC_Gaussian_10_15.m
| D	testsuite/data/kernels/Combined_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| A	testsuite/data/kernels/Combined_60_3_LinearString_FixedDegreeString_True_10_DNA_DNA_60_PolyMatchString_60_10_10_3_DNA.m
| A	testsuite/data/kernels/CommUlongString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommUlongString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/CommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/CommWordString_False_60_0_2_False_DNA_3.m
| M	testsuite/data/kernels/Custom_7.m
| M	testsuite/data/kernels/LinearWord.m
| A	testsuite/data/kernels/SparsePoly_3_True_True_10.m
| D	testsuite/data/kernels/SparsePoly_True_True_3_10.m
| A	testsuite/data/kernels/WeightedCommWordString_60_0_False_2_False_DNA_3.m
| D	testsuite/data/kernels/WeightedCommWordString_False_60_0_2_False_DNA_3.m
| M	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
|  
* commit 41bd9f5830276a1d85de679c70946f665a02365f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Dec 2 11:32:14 2007 +0000
| 
|     Put square optimisation back into SparseGaussianKernel (and added to
|     SparseEuclidianDistance).
| 
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/distance/SparseEuclidianDistance.h
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/generator/dlist.py
|  
* commit c3129929b394eec3e4d41a556f502156b1b67170
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 17:53:46 2007 +0000
| 
|     Presumably fixed issue with NaN values in SparseEuclidianDistance.
|     Unfortunately, lost some speed in SparseGaussianKernel, but will be improved very
|     soon.
| 
| M	src/distance/SparseEuclidianDistance.cpp
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseGaussianKernel.cpp
| A	testsuite/data/distances/SparseEuclidianDistance.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/featops.py
|  
* commit a17e50776582d2b314caf36f7057bb334fcf40ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 15:43:21 2007 +0000
| 
|     Added (and adjusted) Canberra/Manhattan/HammingWordDistances to testsuite.
|     Fixed a little bug in cleaning data directories when generator is run.
| 
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| A	testsuite/data/distances/CanberraWordDistance_False_60_0_DNA_3.m
| A	testsuite/data/distances/EuclidianDistance.m
| A	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_False_3.m
| A	testsuite/data/distances/HammingWordDistance_False_60_0_DNA_True_3.m
| A	testsuite/data/distances/ManhattanWordDistance_False_60_0_DNA_3.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
| M	testsuite/generator/fileops.py
|  
* commit 895b80eda6708b619a9fe192e304a8f38a4ab60f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:41:01 2007 +0000
| 
|     Previous purge of Canberra/Hamming/ManhattanWordKernels was incomplete and
|     presumably broke build of other interfaces than python-modular.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit a844a19736773622075f632308f8190345a9a638
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:39:22 2007 +0000
| 
|     Previous check-in was done in wrong directory, so these had been missing.
| 
| D	testsuite/data/distances/NormSquaredDistance.m
| M	testsuite/generator/distances.py
| M	testsuite/generator/dlist.py
|  
* commit 5d0f89eb8851b197e14876a546c7a35989332c2f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 14:21:05 2007 +0000
| 
|     Renamed SquaredNorm to Euclidian (with compute() modified to return the
|     result's sqrt).
| 
| M	src/clustering/KMeans.cpp
| M	src/distance/Distance.i
| A	src/distance/EuclidianDistance.cpp
| A	src/distance/EuclidianDistance.h
| A	src/distance/EuclidianDistance.i
| D	src/distance/NormSquaredDistance.cpp
| D	src/distance/NormSquaredDistance.h
| D	src/distance/NormSquaredDistance.i
| A	src/distance/SparseEuclidianDistance.cpp
| A	src/distance/SparseEuclidianDistance.h
| A	src/distance/SparseEuclidianDistance.i
| D	src/distance/SparseNormSquaredDistance.cpp
| D	src/distance/SparseNormSquaredDistance.h
| D	src/distance/SparseNormSquaredDistance.i
| M	src/guilib/GUIDistance.cpp
| M	src/lib/common.h
|  
* commit abcedbe75d5de2657d5d2f2528640c49d4388b8b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:53:54 2007 +0000
| 
|     Oopsie, forgot to rename two function calls.
| 
| M	python-modular/testcases/kernels.py
|  
* commit 6f8c5c425f7174fbeba9ea1bed4a8533a62614e3
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:50:04 2007 +0000
| 
|     Big testdata update and little import fix in generator's kernels.py.
| 
| D	testsuite/data/AUCKernel_Gaussian_10_15.m
| D	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| D	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/ConstKernel_230.m
| D	testsuite/data/CustomKernel_7.m
| D	testsuite/data/DiagKernel_230.m
| D	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| D	testsuite/data/GaussianKernel_13.m
| D	testsuite/data/GaussianShiftKernel_1_13_2.m
| D	testsuite/data/HistogramWordKernel.m
| D	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| D	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearStringKernel_60_DNA.m
| D	testsuite/data/LinearWordKernel.m
| D	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| D	testsuite/data/PolyKernel_False_3_False.m
| D	testsuite/data/PolyKernel_False_3_True.m
| D	testsuite/data/PolyKernel_True_3_False.m
| D	testsuite/data/PolyKernel_True_3_True.m
| D	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| D	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| D	testsuite/data/PolyMatchWordKernel_3_False.m
| D	testsuite/data/PolyMatchWordKernel_3_True.m
| D	testsuite/data/SigmoidKernel_05_07_10.m
| D	testsuite/data/SigmoidKernel_11_13_10.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| D	testsuite/data/SparseGaussianKernel_13.m
| D	testsuite/data/SparseLinearKernel_10.m
| D	testsuite/data/SparsePolyKernel_True_True_3_10.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| D	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| D	testsuite/data/WordMatchKernel_3.m
| M	testsuite/data/distances/NormSquaredDistance.m
| A	testsuite/data/kernels/AUC_Gaussian_10_15.m
| A	testsuite/data/kernels/Chi2_10_12.m
| A	testsuite/data/kernels/Combined_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| A	testsuite/data/kernels/CommUlongString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/CommWordString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/Const_230.m
| A	testsuite/data/kernels/Custom_7.m
| A	testsuite/data/kernels/Diag_230.m
| M	testsuite/data/kernels/Distance_CanberraMetric_17.m
| A	testsuite/data/kernels/FixedDegreeString_60_3_DNA.m
| A	testsuite/data/kernels/GaussianShift_1_13_2.m
| A	testsuite/data/kernels/Gaussian_13.m
| A	testsuite/data/kernels/LinearByte_60_RAWBYTE.m
| A	testsuite/data/kernels/LinearString_60_DNA.m
| A	testsuite/data/kernels/LinearWord.m
| A	testsuite/data/kernels/Linear_10.m
| A	testsuite/data/kernels/LocalAlignmentString_60_DNA.m
| A	testsuite/data/kernels/PolyMatchString_60_3_False_DNA.m
| A	testsuite/data/kernels/PolyMatchString_60_3_True_DNA.m
| A	testsuite/data/kernels/PolyMatchWord_3_False.m
| A	testsuite/data/kernels/PolyMatchWord_3_True.m
| A	testsuite/data/kernels/Poly_False_3_False.m
| A	testsuite/data/kernels/Poly_False_3_True.m
| A	testsuite/data/kernels/Poly_True_3_False.m
| A	testsuite/data/kernels/Poly_True_3_True.m
| A	testsuite/data/kernels/Sigmoid_05_07_10.m
| A	testsuite/data/kernels/Sigmoid_11_13_10.m
| A	testsuite/data/kernels/SimpleLocalityImprovedString_5_60_DNA_7_5.m
| A	testsuite/data/kernels/SparseGaussian_13.m
| A	testsuite/data/kernels/SparseLinear_10.m
| A	testsuite/data/kernels/SparsePoly_True_True_3_10.m
| A	testsuite/data/kernels/WeightedCommWordString_False_60_0_2_False_DNA_3.m
| A	testsuite/data/kernels/WeightedDegreePositionString_60_20_DNA.m
| A	testsuite/data/kernels/WeightedDegreeString_60_20_DNA_0.m
| A	testsuite/data/kernels/WordMatch_3.m
| A	testsuite/data/kernels/svm_Gaussian_16_30_0001_-00252730695658_15_00001.m
| A	testsuite/data/kernels/svm_Gaussian_1_0017_001_-0984442849736_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_023_001_0800284844791_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_15_001_0482488626012_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_0001_-0496371444648_15_00001.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_001_-000101252233711_15_1e-05.m
| A	testsuite/data/kernels/svm_Gaussian_1_30_001_0659730916612_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-009996189242_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0987832464475_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_-0860104989336_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0654533112253_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_00990309065949_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-0547489361074_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0738526615821_15_1e-05.m
| M	testsuite/generator/kernels.py
|  
* commit d35497da26bdca0fa96dc481effdb228804ba8a4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 30 11:44:39 2007 +0000
| 
|     Established infrastructure to test Distances (including an update to
|     NormSquaredDistance).
| 
| A	python-modular/testcases/distances.py
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/test.py
| A	python-modular/testcases/util.py
| M	src/distance/Distance.cpp
| M	src/distance/Distance.i
| M	src/distance/NormSquaredDistance.cpp
| M	src/distance/NormSquaredDistance.h
| A	testsuite/data/distances/NormSquaredDistance.m
| A	testsuite/data/kernels/Distance_CanberraMetric_17.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/distances.py
| A	testsuite/generator/dlist.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
|  
* commit fc57df52608e327b55033424a7297743871da04d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 29 20:25:36 2007 +0000
| 
|     Purged kernels Manhattan/Canberra/HammingWord.
| 
| D	src/kernel/CanberraWordKernel.cpp
| D	src/kernel/CanberraWordKernel.h
| D	src/kernel/CanberraWordKernel.i
| D	src/kernel/HammingWordKernel.cpp
| D	src/kernel/HammingWordKernel.h
| D	src/kernel/HammingWordKernel.i
| M	src/kernel/Kernel.i
| D	src/kernel/ManhattanWordKernel.cpp
| D	src/kernel/ManhattanWordKernel.h
| D	src/kernel/ManhattanWordKernel.i
| D	testsuite/data/CanberraWordKernel_17.m
| D	testsuite/data/CanberraWordKernel_False_60_0_17_DNA_3.m
| D	testsuite/data/DistanceKernel_CanberraMetric_15.m
| D	testsuite/data/DistanceKernel_CanberraWordDistance_17.m
| D	testsuite/data/DistanceKernel_HammingWordDistance_13.m
| D	testsuite/data/DistanceKernel_ManhattanWordDistance_15.m
| D	testsuite/data/HammingWordKernel_False_13.m
| D	testsuite/data/HammingWordKernel_False_60_False_0_13_DNA_3.m
| D	testsuite/data/ManhattanWordKernel_15.m
| D	testsuite/data/ManhattanWordKernel_False_60_0_15_DNA_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 0cf52abe65c163b0fd681cfd393ac54ba192dc81
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 29 20:07:32 2007 +0000
| 
|     Converted Manhattan/Hamming/CanberraWordKernel/Distance to String<WORD>.
|     As can be seen in the output generated by the testsuite, the aforementioned
|     kernels and distances yield the same results, so the kernels will be removed
|     with the next commit.
| 
| M	src/distance/CanberraWordDistance.cpp
| M	src/distance/CanberraWordDistance.h
| M	src/distance/CanberraWordDistance.i
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/HammingWordDistance.cpp
| M	src/distance/HammingWordDistance.h
| M	src/distance/HammingWordDistance.i
| M	src/distance/ManhattanWordDistance.cpp
| M	src/distance/ManhattanWordDistance.h
| M	src/distance/ManhattanWordDistance.i
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/ManhattanWordKernel.cpp
| M	src/kernel/ManhattanWordKernel.h
| A	testsuite/data/CanberraWordKernel_False_60_0_17_DNA_3.m
| A	testsuite/data/DistanceKernel_CanberraWordDistance_17.m
| A	testsuite/data/DistanceKernel_HammingWordDistance_13.m
| A	testsuite/data/DistanceKernel_ManhattanWordDistance_15.m
| A	testsuite/data/HammingWordKernel_False_60_False_0_13_DNA_3.m
| A	testsuite/data/ManhattanWordKernel_False_60_0_15_DNA_3.m
| M	testsuite/generator/__init__.py
| D	testsuite/generator/distance.py
| A	testsuite/generator/distances.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 22b43e775df9fa46a7b1813abf58e4941287309a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 27 19:40:18 2007 +0000
| 
|     - some cleanups while showing sebastian the code
|     - some more docu for SVM.h
| 
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.cpp
| M	src/classifier/svm/SVM.h
| M	src/clustering/Clustering.i
| M	src/distance/DistanceMachine.i
| M	src/distributions/histogram/Histogram.cpp
|  
* commit 4ca73b528d6318d47817e9a5effe0f77ef8d7747
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 27 08:53:30 2007 +0000
| 
|     Forgot to update testdata after changes in data format in version 2477.
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| M	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| M	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/data/DiagKernel_230.m
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/HistogramWordKernel.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_60_DNA.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| M	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| M	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| M	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| M	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-009996189242_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-0712411277882_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0987832464475_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0994840232717_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_-0860104989336_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_0738193374723_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0166814836078_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0654533112253_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_00990309065949_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_0515844230415_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-0547489361074_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-0604902457905_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0131283057203_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0738526615821_15_1e-05.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit e692b2ebc98bd55539aad5d44558303f15370ea8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 27 08:35:16 2007 +0000
| 
|     Put computation of DistanceKernel in testcase generator back into kernels.py
|     which was seperated due to a misunderstanding of how Distances are to be
|     tested.
| 
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/distance.py
| M	testsuite/generator/kernels.py
|  
* commit 492a767bf2b443a3820f8ac7b9b3821f5287ddc5
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 20:10:15 2007 +0000
| 
|     Fixed some upper-/lowercase inconsistencies in testsuite.
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 246d7d753127081e3b958e0f7e90f01c81e6140b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 18:27:26 2007 +0000
| 
|     First (wrong) attempt at testing HistogramWord (and SalzbergWord).
| 
| A	testsuite/data/HistogramWordKernel.m
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 7e9ae44b3624d74c0b5ff3c861ada8fedf50ca25
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 26 14:36:47 2007 +0000
| 
|     Added README to define what build dependencies are necessary to generate
|     the documentation
| 
| A	doc/README.deps
|  
* commit 1e947ad873c72805cf22256b461786cc26b14036
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 26 13:05:47 2007 +0000
| 
|     let doxygen only scan .h files, ignore *_wrap.h files, speeds things up tremendously
| 
| M	src/classifier/Classifier.doxy
| M	src/clustering/Clustering.doxy
| M	src/distance/Distance.doxy
| M	src/distributions/Distribution.doxy
| M	src/features/Features.doxy
| M	src/kernel/Kernel.doxy
| M	src/lib/Library.doxy
| M	src/preproc/PreProc.doxy
| M	src/regression/Regression.doxy
| M	src/structure/Structure.doxy
|  
* commit af91987824efa29c16f1d9a130be08c07214cd12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 26 12:50:25 2007 +0000
| 
|     add void deps to clustering/CLustering_doxygen.i
| 
| M	src/.generate_link_dependencies.py
|  
* commit 8e3ef5e3b269eaf888bb6fd7d5ae8a78c327fcaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 21:21:20 2007 +0000
| 
|     clustering should include clustering stuff not classifiers... argh
|     cleanup Makefile
| 
| M	src/Makefile
| M	src/clustering/Clustering.i
|  
* commit 20b0cda151d579e9c89940b264c846d9c136d690
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 20:14:49 2007 +0000
| 
|     allow to disable doxygen python-modular doc generation
| 
| M	src/Makefile
| M	src/configure
|  
* commit 197dbdf56c49d4360dbc5bab8244c6774f6cbb9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 20:07:15 2007 +0000
| 
|     adjust make clean
| 
| M	src/Makefile
|  
* commit 5342814f83eafa652c7daf5cf958704fa321f4e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 19:59:02 2007 +0000
| 
|     USE -> HAVE
| 
| M	src/classifier/Classifier.i
| M	src/clustering/Clustering.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/features/Features.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/Structure.i
|  
* commit f38945c583985c9e06dec24cba510e661110caf6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 19:57:51 2007 +0000
| 
|     add build logic for shogun w/ doxyfile
| 
| M	src/.doxy2swig.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| A	src/classifier/Classifier.doxy
| M	src/classifier/Classifier.i
| A	src/clustering/Clustering.doxy
| M	src/clustering/Clustering.i
| M	src/configure
| A	src/distance/Distance.doxy
| M	src/distance/Distance.i
| A	src/distributions/Distribution.doxy
| M	src/distributions/Distribution.i
| A	src/features/Features.doxy
| M	src/features/Features.i
| A	src/kernel/Kernel.doxy
| M	src/kernel/Kernel.i
| A	src/lib/Library.doxy
| M	src/lib/Library.i
| A	src/preproc/PreProc.doxy
| M	src/preproc/PreProc.i
| A	src/regression/Regression.doxy
| M	src/regression/Regression.i
| A	src/structure/Structure.doxy
| M	src/structure/Structure.i
|  
* commit 18a84bd4615a05c155ecb21862668756016e0734
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 15:27:48 2007 +0000
| 
|     argh, fix typo
| 
| M	src/configure
|  
* commit 435db81cb2e95db5b339835b2f9ccd8514e30468
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 25 11:44:27 2007 +0000
| 
|     Fixed tests for CustomKernel.
| 
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit f597a5dbacfdd10c0378ad3ac36d3bf6cc99ab89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 10:34:47 2007 +0000
| 
|     OK, the roadmap to 0.5.0 is clear, we aim for a complete test suite for
|     python-modular and doxygen online help in python (from cmdline), doxygen
|     documentation and examples
|     
|     - first steps to autodetect makefile/build depency integreation for doxygen
| 
| A	src/.doxy2swig.py
| M	src/Makefile
| M	src/NEWS
| M	src/configure
|  
* commit 544e9b4a3142f0e3ea48969b9152268f6ceb458e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 25 08:55:26 2007 +0000
| 
|     fixes for custom kernel, potentially needs adjustments in other interfaces
| 
| M	python-modular/testcases/kernels.py
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
| M	src/lib/Mathematics.h
| M	testsuite/data/CustomKernel_7.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/generator/kernels.py
|  
* commit 55c90b15799dea3d7a92d3df972c750ac1e7f36e
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Nov 24 13:55:34 2007 +0000
| 
|     Added testing for Custom kernel, while bugfixing and cleaning it. The testdata
|     looks weird, though, and has to be investigated further.
| 
| M	python-modular/testcases/kernels.py
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| A	testsuite/data/CombinedKernel_3_FixedDegreeString_10_DNA_DNA_DNA_60_LinearString_3_True_60_PolyMatchString_60_10_10.m
| M	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/ConstKernel_230.m
| A	testsuite/data/CustomKernel_7.m
| M	testsuite/data/DiagKernel_230.m
| M	testsuite/data/DistanceKernel_CanberraMetric_15.m
| M	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_60_DNA.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| M	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| M	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| M	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| M	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-0712411277882_15_00001.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_0137701197402_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0992246586824_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0994840232717_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_-0976073792555_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_0738193374723_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0166814836078_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_0572167113586_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_-016890375816_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_0515844230415_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-0604902457905_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0131283057203_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0292947069007_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0679912384665_15_1e-05.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/dataops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit e9ed77295f5360cc7fcf07497fc83bc8fc38ef62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 24 05:03:11 2007 +0000
| 
|     fix a compile warning
| 
| M	src/features/StringFeatures.h
|  
* commit 3649f7d33cabe6c9b026a1a35e9bc1b4518a0120
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 21:02:50 2007 +0000
| 
|     Added CommUlongStringKernel for testing.
| 
| M	python-modular/testcases/kernels.py
| M	src/features/StringFeatures.i
| A	testsuite/data/CommUlongStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/featops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 22b6e263a212fe8ab3158729dfcdf534b50700da
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 12:58:48 2007 +0000
| 
|     Added a first testcase for Distance kernel with one Distance and broke
|     out some stuff into more modules in the test generator.
|     (unsorted Python dicts are annoying in file names, hence the long list of
|     changed data files)
| 
| M	python-modular/testcases/kernels.py
| M	src/distance/Canberra.i
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| D	testsuite/data/CombinedKernel_10_DNA_60_3_0_3_LinearString_FixedDegreeString_False_10_10_True_3_PolyMatchString.m
| M	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| A	testsuite/data/CommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/CommWordStringKernel_False_60_2_0_3_False_DNA.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/DiagKernel_230.m
| A	testsuite/data/DistanceKernel_CanberraMetric_15.m
| D	testsuite/data/FixedDegreeStringKernel_3_DNA_60.m
| A	testsuite/data/FixedDegreeStringKernel_60_3_DNA.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearStringKernel_60_DNA.m
| D	testsuite/data/LinearStringKernel_DNA_60.m
| M	testsuite/data/LinearWordKernel.m
| A	testsuite/data/LocalAlignmentStringKernel_60_DNA.m
| D	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| M	testsuite/data/ManhattanWordKernel_15.m
| M	testsuite/data/PolyKernel_False_3_False.m
| M	testsuite/data/PolyKernel_False_3_True.m
| M	testsuite/data/PolyKernel_True_3_False.m
| M	testsuite/data/PolyKernel_True_3_True.m
| D	testsuite/data/PolyMatchStringKernel_3_False_DNA_60.m
| D	testsuite/data/PolyMatchStringKernel_3_True_DNA_60.m
| A	testsuite/data/PolyMatchStringKernel_60_3_False_DNA.m
| A	testsuite/data/PolyMatchStringKernel_60_3_True_DNA.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_07_10.m
| M	testsuite/data/SigmoidKernel_11_13_10.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_60_DNA_7_5.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_DNA_7_5_60.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| M	testsuite/data/SparsePolyKernel_True_True_3_10.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_0_2_False_DNA_3.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_2_0_3_False_DNA.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_DNA_60.m
| A	testsuite/data/WeightedDegreePositionStringKernel_60_20_DNA.m
| D	testsuite/data/WeightedDegreeStringKernel_20_DNA_0_60.m
| A	testsuite/data/WeightedDegreeStringKernel_60_20_DNA_0.m
| M	testsuite/data/WordMatchKernel_3.m
| D	testsuite/data/svm_GaussianKernel_16_30_0001_-0304929420736_15_00001.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_0137701197402_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_0017_001_-0990040918622_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0992246586824_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_-0976073792555_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_023_001_0921399762702_15_1e-05.m
| D	testsuite/data/svm_GaussianKernel_1_15_001_-0535664969494_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_0572167113586_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_-016890375816_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_0001_0190791921506_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_-073886063353_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0292947069007_15_00001.m
| D	testsuite/data/svm_GaussianKernel_1_30_001_0386970626218_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0679912384665_15_1e-05.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/dataops.py
| A	testsuite/generator/distance.py
| A	testsuite/generator/featops.py
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit cab4c7deacedf4ed61f291f9b2c7a03d7e4d36e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 11:25:57 2007 +0000
| 
|     Preparing for new Release shogun_0.4.4
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 25266f09e652660df66fcf90e3ada4ce5b79f88d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 11:22:40 2007 +0000
| 
|     add Christoph Lampert to authors
| 
| M	src/.authors
|  
* commit c687546673caed00690577a1f2e9f13b8d726677
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 10:47:15 2007 +0000
| 
|     fix dates
| 
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/clustering/KMeans.h
|  
* commit cf0e04c08fbaf172fb1d5280252c5cbdd525ff84
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 10:46:50 2007 +0000
| 
|     fill in copyright information
| 
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
|  
* commit 34158739e8585da77e489dddab53f1fbd45a2dba
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 09:35:21 2007 +0000
| 
|     More Manhatten->Manhattan changes.
| 
| M	src/guilib/GUIDistance.cpp
| M	testsuite/data/CanberraWordKernel_17.m
| A	testsuite/data/CombinedKernel_10_DNA_PolyMatchString_60_0_3_LinearString_FixedDegreeString_False_10_3_10_3_True.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearWordKernel.m
| A	testsuite/data/ManhattanWordKernel_15.m
| D	testsuite/data/ManhattenWordKernel_15.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/WordMatchKernel_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 7dc0746629e55997108187c0984e40441da03b60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 09:28:28 2007 +0000
| 
|     include should not be needed
| 
| M	src/kernel/ManhattanWordKernel.i
|  
* commit 2c711818146a9f6e93a9cad508dbb9798f03a2f9
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Fri Nov 23 09:25:07 2007 +0000
| 
|     Added/changed debug stuff which seemed helpful in finding fix mentioned in
|     previous check-in.
| 
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/features/Features.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 72b5e02dd57c597617e31fe3b4ee953c78800e16
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 23 08:43:06 2007 +0000
| 
|     don't call delete but SG_UNREF for swig interface in list, should fix double free w/ combined kernel
| 
| M	src/lib/List.h
|  
* commit 7b8dc881f3a506bcc2fa3b67bfbab6eada8481fe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 21 20:36:43 2007 +0000
| 
|     While unsuccesfully finding a way to handle typemaps and templates properly in
|     features/StringFeatures.i, found and fixed a segfault in
|     features/StringFeatures.h:get_string.
| 
| M	src/features/StringFeatures.h
|  
* commit 4a28333b2d6c02522d0063cb02193aa154bf6ff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 21 15:52:05 2007 +0000
| 
|     fix building of python interface update NEWS for new release
| 
| M	src/NEWS
| M	src/guilib/GUIPython.cpp
|  
* commit 99fb530953c02b518480044d39dc1cdf40699a60
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 17:39:19 2007 +0000
| 
|     Added capability for testing epsilon and tube epsilon in SVMs.
| 
| M	python-modular/testcases/kernels.py
| D	testsuite/data/svm_GaussianKernel_0017_16_-0986053229288_15.m
| D	testsuite/data/svm_GaussianKernel_0017_1_-0983232003456_15.m
| D	testsuite/data/svm_GaussianKernel_023_1_-085865028282_15.m
| D	testsuite/data/svm_GaussianKernel_15_1_0538093680275_15.m
| A	testsuite/data/svm_GaussianKernel_16_30_0001_-0304929420736_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_0017_001_-0990040918622_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_023_001_0921399762702_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_15_001_-0535664969494_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_0001_0190791921506_15_00001.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_-073886063353_15_1e-05.m
| A	testsuite/data/svm_GaussianKernel_1_30_001_0386970626218_15_00001.m
| D	testsuite/data/svm_GaussianKernel_30_1_-0426399161444_15.m
| M	testsuite/generator/kernels.py
|  
* commit 20af286d0daca7de12c0b96545b1fee16d92d00a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 17:05:53 2007 +0000
| 
|     Added ASSERTs to prevent AUC kernel from segfaulting when subkernel is not
|     properly initialised; also added similar ASSERTs to kernel/Kernel.h:kernel().
| 
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/Kernel.h
|  
* commit 85fec1a88833a9a8abdf568d9514a775c6601402
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 20 16:01:48 2007 +0000
| 
|     fix memory leak in libsvm wrapper as reported by alexander binder
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit 18876d78efe9fdb4f7fa511009a251cdac21fbbe
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 15:04:36 2007 +0000
| 
|     Fixed problem with NaNs in AUC kernel's output (which also influences the
|     other Word kernels).
| 
| M	python-modular/testcases/kernels.py
| M	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/WordMatchKernel_3.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 4cf7458f70270944b8d59d88d9bd04f24ff6e680
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 20 11:04:21 2007 +0000
| 
|     LinearByte now uses alphabet RAWBYTE in testsuite.
| 
| A	testsuite/data/LinearByteKernel_60_RAWBYTE.m
| D	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/generator/kernels.py
|  
* commit 5275d65c896fff1abb10fb731d816b8777150f0d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 19 22:24:05 2007 +0000
| 
|     - don't forget to SG_UNREF kernels in CombinedKernel on deletion
|     - add sparse distance
|     - add debug code to analyse double free in combined kernel
| 
| M	src/distance/Distance.i
| M	src/distance/RealDistance.i
| A	src/distance/SparseDistance.i
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	testsuite/generator/kernels.py
|  
* commit 4b3ee2b96667368a1931f0405c7aeebd4a8952fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 19 15:34:08 2007 +0000
| 
|     manhattEn -> manhattAn
|     move align function from realfeatures to mathematics
| 
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| A	src/kernel/ManhattanWordKernel.cpp
| A	src/kernel/ManhattanWordKernel.h
| A	src/kernel/ManhattanWordKernel.i
| D	src/kernel/ManhattenWordKernel.cpp
| D	src/kernel/ManhattenWordKernel.h
| D	src/kernel/ManhattenWordKernel.i
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 28ceebe4479769c24166c0569b9903a1f78d631a
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 18 17:12:32 2007 +0000
| 
|     Added AUC kernel. way too many NaNs, though...
| 
| M	python-modular/testcases/kernels.py
| A	testsuite/data/AUCKernel_Gaussian_10_15.m
| M	testsuite/generator/kernels.py
| M	testsuite/generator/klist.py
|  
* commit 9bb912e57862597c9db70551c9ce9c806a0111db
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 12:00:44 2007 +0000
| 
|     reenabled a feature that was disabled for optimization (but its still fast).
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit f038735628b3e5e93435e40aa07064c988597627
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 01:13:21 2007 +0000
| 
|     fix uninitialized memory reads.
| 
| M	src/structure/DynProg.cpp
|  
* commit 9bacf89a357dbeedca34e573b71e9550feb955e0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 18 01:05:01 2007 +0000
| 
|     two fixes of some previous optimizations... :-|
| 
| M	src/structure/DynProg.cpp
|  
* commit eed25f6ae9bbf6e5b19734982fefae164d8e5698
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Nov 17 00:28:24 2007 +0000
| 
|     Speedups for the Viterbi-algorithm.
|     Runs now about twice as fast and still gives the same results for nbest=1.
|     Untestet for nbest>1.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 879e9472b369cda9db2f56e0b54eb9c690734d32
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 15 21:28:15 2007 +0000
| 
|     testing...
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 697de5f82aa00bc69c2ddf97b9b38075d41edb18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 15 13:14:22 2007 +0000
| 
|     argh! this is the whydidntanyonenoticethisearlier-bug which must have been around for almost a year...
|     
|     ASSERT was undefined in matlab interface... so THERE WAS NO ERROR CHECKING
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit 7cd8923c490b198432660de3df9ba3eba3d5aa2f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 14 21:07:26 2007 +0000
| 
|     Added code for handling CombinedKernel (and presumably other kernels
|     using subkernels).
|     the little bugger does not behave nicely, though: currently, there is an
|     error like this: *** glibc detected *** python: corrupted double-linked
|     list: 0x082a9b58 on test, but not on generation of the test data (which
|     actually should be the same). also, when using kernels of different
|     feature classes, like String and Simple, it throws a Shogun exception.
|     will have to investigate further.
| 
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	testsuite/data/CanberraWordKernel_17.m
| M	testsuite/data/Chi2Kernel_10_12.m
| A	testsuite/data/CombinedKernel_10_DNA_60_3_0_3_LinearString_FixedDegreeString_False_10_10_True_3_PolyMatchString.m
| D	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/CommWordStringKernel_False_60_2_0_3_False_DNA.m
| M	testsuite/data/ConstKernel_230.m
| M	testsuite/data/DiagKernel_230.m
| A	testsuite/data/FixedDegreeStringKernel_3_DNA_60.m
| D	testsuite/data/FixedDegreeStringKernel_DNA_3_60.m
| M	testsuite/data/GaussianKernel_13.m
| M	testsuite/data/GaussianShiftKernel_1_13_2.m
| D	testsuite/data/HammingWordKernel_13_False.m
| A	testsuite/data/HammingWordKernel_False_13.m
| M	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/LinearStringKernel_DNA_60.m
| M	testsuite/data/LinearWordKernel.m
| M	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| M	testsuite/data/ManhattenWordKernel_15.m
| D	testsuite/data/PolyKernel_3_False_False.m
| D	testsuite/data/PolyKernel_3_False_True.m
| D	testsuite/data/PolyKernel_3_True_False.m
| D	testsuite/data/PolyKernel_3_True_True.m
| A	testsuite/data/PolyKernel_False_3_False.m
| A	testsuite/data/PolyKernel_False_3_True.m
| A	testsuite/data/PolyKernel_True_3_False.m
| A	testsuite/data/PolyKernel_True_3_True.m
| A	testsuite/data/PolyMatchStringKernel_3_False_DNA_60.m
| A	testsuite/data/PolyMatchStringKernel_3_True_DNA_60.m
| D	testsuite/data/PolyMatchStringKernel_DNA_3_60_False.m
| D	testsuite/data/PolyMatchStringKernel_DNA_3_60_True.m
| M	testsuite/data/PolyMatchWordKernel_3_False.m
| M	testsuite/data/PolyMatchWordKernel_3_True.m
| A	testsuite/data/SigmoidKernel_05_07_10.m
| D	testsuite/data/SigmoidKernel_05_10_07.m
| D	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/SigmoidKernel_11_13_10.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_DNA_7_5_60.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_DNA_5_5_7_60.m
| M	testsuite/data/SparseGaussianKernel_13.m
| M	testsuite/data/SparseLinearKernel_10.m
| D	testsuite/data/SparsePolyKernel_3_10_True_True.m
| A	testsuite/data/SparsePolyKernel_True_True_3_10.m
| D	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_2_0_3_False_DNA.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_DNA_60.m
| D	testsuite/data/WeightedDegreePositionStringKernel_DNA_20_60.m
| A	testsuite/data/WeightedDegreeStringKernel_20_DNA_0_60.m
| D	testsuite/data/WeightedDegreeStringKernel_DNA_0_20_60.m
| M	testsuite/data/WordMatchKernel_3.m
| D	testsuite/data/svm_GaussianKernel_0017_15_16_-0996620794062.m
| D	testsuite/data/svm_GaussianKernel_0017_15_1_-0987072649055.m
| A	testsuite/data/svm_GaussianKernel_0017_16_-0986053229288_15.m
| A	testsuite/data/svm_GaussianKernel_0017_1_-0983232003456_15.m
| D	testsuite/data/svm_GaussianKernel_023_15_1_-0888718286876.m
| A	testsuite/data/svm_GaussianKernel_023_1_-085865028282_15.m
| D	testsuite/data/svm_GaussianKernel_15_15_1_00600785466709.m
| A	testsuite/data/svm_GaussianKernel_15_1_0538093680275_15.m
| D	testsuite/data/svm_GaussianKernel_30_15_1_-034632271332.m
| A	testsuite/data/svm_GaussianKernel_30_1_-0426399161444_15.m
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| A	testsuite/generator/klist.py
| D	testsuite/klist.py
|  
* commit d6b3a97197aeb04c6c7279c0c05dc48f57080559
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 14 18:36:48 2007 +0000
| 
|     now destroy tree then recreate an empty one
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
|  
* commit 63cf5978d84129136df16055c5a320f596442b7a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 14 15:30:03 2007 +0000
| 
|     really destroy the tree after doing a full batch computation run, this should
|     especially help the wd* kernels when many of them are chained via the combined
|     kernel to reduce memory usage
| 
| M	src/classifier/svm/SVMOcas.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit ad62f1af5b55fba76f9274b10f6f5c92592b56b4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 13 20:23:02 2007 +0000
| 
|     revert
| 
| M	src/structure/DynProg.cpp
|  
* commit 33cd15849b6a33ca2130d902f0e61b2fd4edbff1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 13 20:20:21 2007 +0000
| 
|     fixed typo
| 
| M	src/kernel/CombinedKernel.cpp
| M	src/structure/DynProg.cpp
|  
* commit a4bf25b5b34d30c206b1fd4fd86df59c453bbc18
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 13 20:16:14 2007 +0000
| 
|     fix serious bug in output computation which could occur only when a kernel
|     supporting batch computation was used in conjunction with a kernel neither
|     capable of batch computation and linadd AND the number of threads was > 1
|     
|     note that this may have lead to wrong svm - models on TRAINING if svm lightwas
|     used and could also lead to random corruptions when computing output via
|     classify
| 
| M	src/kernel/CombinedKernel.cpp
|  
* commit a2ccaec2808f3e32a43d79308e701e45df7e88c4
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 13 15:38:46 2007 +0000
| 
|     Added support for multiple threads for testing SVMs.
| 
| M	python-modular/testcases/kernels.py
| D	testsuite/data/svm_GaussianKernel_0017_15_-0987072649055.m
| A	testsuite/data/svm_GaussianKernel_0017_15_16_-0996620794062.m
| A	testsuite/data/svm_GaussianKernel_0017_15_1_-0987072649055.m
| D	testsuite/data/svm_GaussianKernel_023_15_-0954281331585.m
| A	testsuite/data/svm_GaussianKernel_023_15_1_-0888718286876.m
| A	testsuite/data/svm_GaussianKernel_15_15_1_00600785466709.m
| A	testsuite/data/svm_GaussianKernel_30_15_1_-034632271332.m
| M	testsuite/generator/kernels.py
|  
* commit 3a1e7173a4ed0e5b466e2271ac1740fa82ae68c9
| Author: Christoph Lampert <chl@ist.ac.at>
| Date:   Tue Nov 13 10:23:30 2007 +0000
| 
|     fixed naming and type differences between get_svm and set_svm
| 
| M	src/guilib/GUIPython.cpp
|  
* commit 57e199db5471ab3364639e987ff341e0d6997252
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 12 17:51:46 2007 +0000
| 
|     Primarily added constructor with Features to each kernel.
|     Testing system has been vastly expanded by this, adding new kernels and
|     their features.
|     Also cleaned up kernels' .h files and a bit .cpp files.
| 
| M	python-modular/examples/combined_features_svm.py
| M	python-modular/examples/wd_kernel.py
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wd_kernel_svm_linadd_batch.py
| M	python-modular/examples/wds_kernel.py
| M	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| M	src/features/StringFeatures.i
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianShiftKernel.cpp
| M	src/kernel/GaussianShiftKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.i
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| A	testsuite/data/CanberraWordKernel_17.m
| D	testsuite/data/Chi2Kernel_10.m
| A	testsuite/data/Chi2Kernel_10_12.m
| M	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| A	testsuite/data/ConstKernel_230.m
| A	testsuite/data/DiagKernel_230.m
| A	testsuite/data/FixedDegreeStringKernel_DNA_3_60.m
| M	testsuite/data/GaussianKernel_13.m
| A	testsuite/data/GaussianShiftKernel_1_13_2.m
| A	testsuite/data/HammingWordKernel_13_False.m
| A	testsuite/data/LinearByteKernel_DNA_60.m
| M	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearStringKernel_DNA_60.m
| A	testsuite/data/LinearWordKernel.m
| A	testsuite/data/LocalAlignmentStringKernel_DNA_60.m
| A	testsuite/data/ManhattenWordKernel_15.m
| A	testsuite/data/PolyKernel_3_False_False.m
| A	testsuite/data/PolyKernel_3_False_True.m
| A	testsuite/data/PolyKernel_3_True_False.m
| M	testsuite/data/PolyKernel_3_True_True.m
| A	testsuite/data/PolyMatchStringKernel_DNA_3_60_False.m
| A	testsuite/data/PolyMatchStringKernel_DNA_3_60_True.m
| A	testsuite/data/PolyMatchWordKernel_3_False.m
| A	testsuite/data/PolyMatchWordKernel_3_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_DNA_5_5_7_60.m
| A	testsuite/data/SparseGaussianKernel_13.m
| A	testsuite/data/SparseLinearKernel_10.m
| A	testsuite/data/SparsePolyKernel_3_10_True_True.m
| M	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_60_0_1_DNA_True.m
| A	testsuite/data/WeightedDegreePositionStringKernel_DNA_20_60.m
| D	testsuite/data/WeightedDegreeStringKernel_20_60_0_1_DNA_-1_False_True.m
| A	testsuite/data/WeightedDegreeStringKernel_DNA_0_20_60.m
| A	testsuite/data/WordMatchKernel_3.m
| A	testsuite/data/svm_GaussianKernel_0017_15_-0987072649055.m
| D	testsuite/data/svm_GaussianKernel_0017_15_-0990040918622.m
| A	testsuite/data/svm_GaussianKernel_023_15_-0954281331585.m
| M	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| M	testsuite/klist.py
|  
* commit be8108bfd1dc697d40865ff7dd08412f41fcc20f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 12 10:30:39 2007 +0000
| 
|     more %ld -> %p pointer printing fixes
| 
| M	src/features/Features.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.cpp
|  
* commit fc90b350d2f507cdcc9308b04a2cd580087f895c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 12 09:53:16 2007 +0000
| 
|     use %p to print pointers
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit bb044fc8404bb7f8af83dd42b86ccbc4a82158d0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 11 00:45:48 2007 +0000
| 
|     fix
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit a69241f33aa49b35d06871bcf150539a27cfa08f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 11 00:37:30 2007 +0000
| 
|     Implemented matlab interface for GaussianShift kernel.
|     (untested)
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit e1616a435fac2079f0c44055ae008333e858196b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 9 10:47:49 2007 +0000
| 
|     fix Chi2 kernel / 2class label test bug reported by Christoph Lampert
| 
| M	src/features/Labels.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
|  
* commit 809cbec31d8c8391fbb8ce9953e2f26388a63029
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 9 09:27:37 2007 +0000
| 
|     - make all svms check that they indeed get a +1/-1 labeling bug reported by Sebastian Hensche - thanks!
|     - update kernel name printing / fix duplicate id, reported by Christoph Lampert
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit ca42feac838f415bd2b8df91bcd553902d4dbc71
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 8 21:16:25 2007 +0000
| 
|     Reorganised testgenerator/test: now even less code to add for new
|     kernels (modifications due to new features pending, though).
| 
| A	python-modular/testcases/kernels.py
| M	python-modular/testcases/test.py
| D	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| D	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| A	testsuite/data/CommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/FixedDegreeStringKernel_DNA_10_60_3.m
| D	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/GaussianKernel_13.m
| A	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearKernel_10_10.m
| D	testsuite/data/LinearStringKernel_DNA_10_10_60_True.m
| D	testsuite/data/LocalAlignmentStringKernel_DNA_10_60.m
| D	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| D	testsuite/data/PolyKernel_10_False_3_False.m
| D	testsuite/data/PolyKernel_10_False_3_True.m
| D	testsuite/data/PolyKernel_10_True_3_False.m
| D	testsuite/data/PolyKernel_10_True_3_True.m
| A	testsuite/data/PolyKernel_3_True_True.m
| D	testsuite/data/PolyMatchStringKernel_3_DNA_10_60_True_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| D	testsuite/data/SimpleLocalityImprovedStringKernel_5_5_7_DNA_10_60.m
| D	testsuite/data/WeightedCommWordStringKernel_0_False_DNA_10_3_2_False.m
| A	testsuite/data/WeightedCommWordStringKernel_False_60_0_DNA_3_2_False.m
| D	testsuite/data/WeightedDegreePositionStringKernel_20_10_60_0_True_DNA_1.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_60_0_1_DNA_True.m
| A	testsuite/data/WeightedDegreeStringKernel_20_60_0_1_DNA_-1_False_True.m
| D	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| A	testsuite/data/svm_GaussianKernel_0017_15_-0990040918622.m
| D	testsuite/data/svm_GaussianKernel_10_10_15.m
| D	testsuite/data/svm_GaussianKernel_10_1_15.m
| M	testsuite/generator/__init__.py
| A	testsuite/generator/fileops.py
| M	testsuite/generator/kernels.py
| A	testsuite/klist.py
|  
* commit 71f96a085a96c832a9c1f84f2f6287595f2025dc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 7 15:09:51 2007 +0000
| 
|     make test py ex.
| 
| M	python-modular/testcases/test.py
|  
* commit f48fa0a63308490a1061ebb6b7e00154257262ea
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:32:56 2007 +0000
| 
|     Preliminarily added some testing for SparsePoly and SparseGaussian.
| 
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit c48f16099af8dac3ff49ba07c026e5a5665f927b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:26:51 2007 +0000
| 
|     Added testing for SimpleLocalityImprovedStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/SimpleLocalityImprovedStringKernel_5_5_7_DNA_10_60.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 6bd5a6842dae4dd869d318c777d585490409419f
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:12:09 2007 +0000
| 
|     Added testing for PolyMatchStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/PolyMatchStringKernel_3_DNA_10_60_True_True.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 6bf5725f14c05d2b6e555fbdeee37f641d1de156
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Wed Nov 7 09:02:39 2007 +0000
| 
|     Added testing for LocalAlignmentStringKernel.
|     Preliminarily added some testing for LinearWord.
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| A	testsuite/data/FixedDegreeStringKernel_DNA_10_60_3.m
| A	testsuite/data/LinearStringKernel_DNA_10_10_60_True.m
| A	testsuite/data/LocalAlignmentStringKernel_DNA_10_60.m
| A	testsuite/data/LocalityImprovedStringKernel_51_5_7_DNA_10_60.m
| A	testsuite/data/WeightedCommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 1d752afaad339e72183b55fc6668ac7aaa9e60d6
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:53:21 2007 +0000
| 
|     Added testing for LinearStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 0add4e3cb29d79820b481213e0ea12067816bdfb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:45:00 2007 +0000
| 
|     Added testing for WeightedCommWordStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 76fd12f3299ca807e4510cc6695df97b0fba8a91
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 20:29:23 2007 +0000
| 
|     Added testing for FixedDegreeStringKernel.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit a07c145860ac37f7cc0b59dcdb5a47988e185b2b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 17:47:21 2007 +0000
| 
|     Added function to clean output dir before it is filled with fresh
|     testdata files.
| 
| M	testsuite/generator/__init__.py
|  
* commit 156650040ec04a96aed1056ded3a40d25476040d
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 17:33:11 2007 +0000
| 
|     Unsuccesfully tried to establish tests for LocalityImprovedString and
|     SparseLinear kernels.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 299c9a99b940ddc017d5cee4364c642e3cda8e64
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 15:55:34 2007 +0000
| 
|     Changed calling of C++ constructors
| 
| M	python-modular/testcases/test_kernels.py
| D	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| A	testsuite/data/WeightedDegreePositionStringKernel_20_10_60_0_True_DNA_1.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 62c8f0ebc57d5fde5803e3ca5b2c74bca6b73a7b
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Nov 6 09:46:41 2007 +0000
| 
|     Implemented a multiplier to generate different labels for svm kernels.
| 
| M	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| M	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| A	testsuite/data/svm_GaussianKernel_10_10_15.m
| D	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/data/svm_GaussianKernel_10_1_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 00560f5e26a1f1f4209ab8831434812a33c95d90
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 5 17:19:38 2007 +0000
| 
|     Enlargened testing of svm_GaussianKernel and slightly optimised writing
|     of testdata.
| 
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| M	testsuite/data/GaussianKernel_10_13.m
| M	testsuite/data/LinearKernel_10_10.m
| M	testsuite/data/PolyKernel_10_False_3_False.m
| M	testsuite/data/PolyKernel_10_False_3_True.m
| M	testsuite/data/PolyKernel_10_True_3_False.m
| M	testsuite/data/PolyKernel_10_True_3_True.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| M	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit ab243b194edf7a5c7b32b3f5c25573d4013245b8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Mon Nov 5 14:07:45 2007 +0000
| 
|     Aligned parameters used in testsuite with C++-API.
| 
| M	python-modular/testcases/test_kernels.py
| A	testsuite/data/CommWordStringKernel_0_False_DNA_10_3_2_False.m
| D	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| D	testsuite/data/LinearKernel_10.m
| A	testsuite/data/LinearKernel_10_10.m
| A	testsuite/data/PolyKernel_10_False_3_False.m
| A	testsuite/data/PolyKernel_10_False_3_True.m
| A	testsuite/data/PolyKernel_10_True_3_False.m
| A	testsuite/data/PolyKernel_10_True_3_True.m
| D	testsuite/data/PolyKernel_False_10_False_3.m
| D	testsuite/data/PolyKernel_False_10_True_3.m
| D	testsuite/data/PolyKernel_True_10_False_3.m
| D	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/WeightedDegreePositionStringKernel_0_True_20_DNA_10_60_1.m
| D	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	testsuite/data/WeightedDegreeStringKernel_20_DNA_10_60_True_0_-1_1_False.m
| D	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit 12d5b7d0fa644bc601cd7efa16f7c25262dacb96
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 20:11:49 2007 +0000
| 
|     Tried to implement tests for LocalityImproved, HammingWord, ManhattanWord and
|     realised that a) interface to Shogun incomplete, b) testsuite needed
|     some more spanking
| 
| M	python-modular/testcases/test.py
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit aaae03d51c6cdc334843b0fdab8c1f693283fc7c
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 16:36:28 2007 +0000
| 
|     optimised 'functionname' away, reduced 'kernelname' to 'name' (wonder if
|     that will comply with matlab and others)
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/data/GaussianKernel_10_13.m
| M	testsuite/data/LinearKernel_10.m
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
| M	testsuite/generator/kernels.py
|  
* commit bb35280826c11784473b99de3163252d058c9bcb
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sun Nov 4 15:52:03 2007 +0000
| 
|     rewrote test code for python-modular.
|     ATTENTION: previous upgrade of shogun seems to have an influence on the
|     PolyKernel. different data is generated and tests fail where inhom is
|     false: !(e-2<e-6).
| 
| D	python-modular/testcases/read_mfile.py
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| M	testsuite/generator/__init__.py
|  
* commit ae8e157b5e457da79ef511adb4436d09670270b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 3 21:34:32 2007 +0000
| 
|     argh, fix C C++ mixup on make depend / fixes python-modular build
| 
| M	src/Makefile
|  
* commit ac72d23978513a72a81ec669c41edfe2c9ecc441
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 3 06:40:15 2007 +0000
| 
|     Use gcc -MM now to generate dependencies (and fall back to makedepend if gcc
|     is not available). This has the big advantage that we generate dependencies
|     only for non-system header files and that gcc knows all the preprocessor
|     macros and we don't need makedepend anymore :)
|     
|     Finally enable batch computation/linadd in kernelmachines by default
| 
| M	src/Makefile
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
| M	src/kernel/KernelMachine.cpp
|  
* commit 851de7e89c196ac11d78511970c41cfe6c6cfdb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 2 08:29:49 2007 +0000
| 
|     - check for existance of log2 in a more principled way + add fall back
|     - add support for Interix based on patches provided by S V N Vishwanathan
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/configure
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 4a995e934f4cd57af29e80cdbb7caf299bcd97f2
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Thu Nov 1 17:16:12 2007 +0000
| 
|     testdata generator revisited.
| 
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| M	testsuite/data/Chi2Kernel_10.m
| M	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| M	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/LinearKernel_10.m
| D	testsuite/data/LinearKernel_True.m
| M	testsuite/data/PolyKernel_False_10_False_3.m
| M	testsuite/data/PolyKernel_False_10_True_3.m
| M	testsuite/data/PolyKernel_True_10_False_3.m
| M	testsuite/data/PolyKernel_True_10_True_3.m
| M	testsuite/data/SigmoidKernel_05_10_07.m
| M	testsuite/data/SigmoidKernel_11_10_13.m
| M	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| M	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/generate_testdata.py
| A	testsuite/generator/__init__.py
| D	testsuite/generator/generate_testcases.py
| A	testsuite/generator/kernels.py
| D	testsuite/generator/m_print.py
|  
* commit ef95312d52217b1c3c3f9ec1801ab32534877279
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 20:33:50 2007 +0000
| 
|     as it turned out, failed testing of a CommonWordString kernel with
|     matlab was _NOT_ due to an error in guilib/ or features/, the error was
|     in the matlab code which tried to convert the training features twice,
|     instead of using the test features. *sigh*
| 
| M	matlab/testcases/test_cws_kernel.m
| M	src/features/Alphabet.h
|  
* commit 069b4bb7bc34efd56503b85d8dcd8340296a1408
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 17:39:29 2007 +0000
| 
|     winged something in matlab that succeeds test for WeightedDegreePositionString
| 
| M	matlab/testcases/test_wds_kernel.m
|  
* commit 1c55f5ae4a3aaf195c8a2c638c59da68013f84d8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 11:18:06 2007 +0000
| 
|     blob of things in the regression tests; sort of first getting in touch
|     with it and finding bugs.
|     mainly moved generator and generated mfiles into testsuite/ and
|     added/implemented some tests for matlab. some tests still do not run
|     through, though.
| 
| M	matlab/testcases/run.sh
| A	matlab/testcases/test_cws_kernel.m
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_linear_kernel.m
| M	matlab/testcases/test_matlab.m
| M	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_svm.m
| A	matlab/testcases/test_wd_kernel.m
| D	matlab/testcases/test_wdchar_kernel.m
| A	matlab/testcases/test_wds_kernel.m
| D	python-modular/test_case_generator/generate_testcases.py
| D	python-modular/test_case_generator/m_print.py
| D	python-modular/testcases/mfiles/Chi2Kernel_10.m
| D	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
| D	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| D	python-modular/testcases/mfiles/LinearKernel_False.m
| D	python-modular/testcases/mfiles/LinearKernel_True.m
| D	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| D	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| D	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| D	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| D	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| D	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| D	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
| D	python-modular/testcases/mfiles/svm_GaussianKernel_10_15.m
| M	python-modular/testcases/run.sh
| M	python-modular/testcases/test_kernels.py
| M	src/features/Alphabet.h
| A	testsuite/data/Chi2Kernel_10.m
| A	testsuite/data/CommWordStringKernel_DNA_False_3_0.m
| A	testsuite/data/GaussianKernel_10_13.m
| A	testsuite/data/LinearKernel_True.m
| A	testsuite/data/PolyKernel_False_10_False_3.m
| A	testsuite/data/PolyKernel_False_10_True_3.m
| A	testsuite/data/PolyKernel_True_10_False_3.m
| A	testsuite/data/PolyKernel_True_10_True_3.m
| A	testsuite/data/SigmoidKernel_05_10_07.m
| A	testsuite/data/SigmoidKernel_11_10_13.m
| A	testsuite/data/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	testsuite/data/WeightedDegreeStringKernel_DNA_60_20.m
| A	testsuite/data/svm_GaussianKernel_10_15.m
| A	testsuite/generator/generate_testcases.py
| A	testsuite/generator/m_print.py
|  
* commit 62017fa090019c31e0d6ca1b209b037175a816a8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Tue Oct 30 11:14:56 2007 +0000
| 
|     added display_vector for long long int
| 
| M	src/lib/Mathematics.cpp
|  
* commit 230be12b06e50519d60be42ad912c6193afc240e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 29 17:04:46 2007 +0000
| 
|     megabytes -> INT
| 
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/DistanceKernel.h
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
|  
* commit e6ca5a2a651b16f6026d65025dfa9dde58aae4c6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 29 15:10:35 2007 +0000
| 
|     make size the last argument with default=10
| 
| M	src/configure
| M	src/kernel/Kernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
|  
* commit 2ae7a3f4b6d3e343f0eac7f2cffb3aac49d8b5c8
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 27 09:52:17 2007 +0000
| 
|     needed to add include of GCC header files on Debian (pre)lenny amd64 to make it compile
| 
| M	src/configure
|  
* commit 14c3fe2893d4ada5eab6f477d075a7433708d554
| Author: Sebastian Henschel <shogun@kodeaffe.de>
| Date:   Sat Oct 27 08:29:20 2007 +0000
| 
|     little bugfix: extra includes should be appended by '-I', not '-L'
| 
| M	src/configure
|  
* commit 27746b003f77c2c098cfe8ab0123cc7abc9b412a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 26 04:46:04 2007 +0000
| 
|     avoid a couple of (useless) memory init's / copies
| 
| M	src/classifier/svm/SVMOcas.cpp
|  
* commit 46c3d8bd75fe9e3482a2727cface4ffd60e1e3e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 19:46:42 2007 +0000
| 
|     finally - ocas works
| 
| M	matlab/examples/liblinear.m
| M	matlab/examples/svmocas.m
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/libocas.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUICommands.h
|  
* commit 96176eac24be81e877447d45d1032512e1850ef1
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Thu Oct 25 18:46:22 2007 +0000
| 
|     addgin debug code
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/libocas.cpp
|  
* commit 6ad9706eb634fadfb0ec4e3156ecb6f17463e02f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 16:44:00 2007 +0000
| 
|     matlab testcases call test_matlab
| 
| M	matlab/examples/svmocas.m
| M	matlab/testcases/run.sh
| M	matlab/testcases/test_kernels.m
| A	matlab/testcases/test_matlab.m
| D	matlab/testcases/test_octave.m
|  
* commit c68b328b937709501f092bbed7c38b2d0efebd1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 25 15:02:20 2007 +0000
| 
|     add mr. kodeaffe to list of authors + minor code edits we spotted while talking about the source
| 
| M	src/.authors
| M	src/base/SGObject.h
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/lib/Mathematics.h
| M	src/preproc/NormOne.cpp
|  
* commit f8de5779c97472e8798ba04afc9d6c1f695ebf28
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 24 21:39:12 2007 +0000
| 
|     one bug less...
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
|  
* commit fd6e4871e0e9522cb668d20a878da68268a78c8d
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Wed Oct 24 17:56:10 2007 +0000
| 
|     fixed some of the bugs
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/features/SparseFeatures.h
|  
* commit bdb709f53a9280151772a824e43c1b3825b37f7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 24 17:20:14 2007 +0000
| 
|     debugging ocas
| 
| A	matlab/examples/svmocas.m
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| M	src/classifier/svm/libocas.cpp
| M	src/classifier/svm/libocas.h
| M	src/classifier/svm/libocas_common.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/features/SparseFeatures.h
| M	src/lib/io.h
|  
* commit 84fd84724375196a7babd31c9bc00439ec23c2cb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 24 16:50:55 2007 +0000
| 
| M	src/lib/common.h
|  
* commit ce532418dd3ea795779983086effd8ee71d34ad0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 24 16:30:23 2007 +0000
| 
|     some timing routines and speedups for DynProg.
| 
| M	src/lib/common.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit fa0001bcd464de50e8631fd1b23085551b953825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 23 19:13:51 2007 +0000
| 
|     start integration of libocas
|     (avoiding code duplication/resyncs between ocas/shogun)
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/classifier/svm/SVMOcas.h
| A	src/classifier/svm/libocas.cpp
| A	src/classifier/svm/libocas.h
| A	src/classifier/svm/libocas_common.h
| M	src/classifier/svm/qpssvmlib.cpp
| M	src/classifier/svm/qpssvmlib.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 92703fd50ca577a9cf0f3acc7988184e372028e4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 23 16:02:07 2007 +0000
| 
|     fix example as reported by jens auer
| 
| M	python-modular/examples/stringfeatures.py
|  
* commit 770099be2f45f498afe482dcd6a61596c941e3a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 22 20:53:35 2007 +0000
| 
|     compile fix:
|     	static classes cannot access dynamic class members,
|     	thus make number of threads an argument to paraaaallel qsort
| 
| M	src/classifier/svm/SVMOcas.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 194171524357b1e35f2311c04b1238a058ac488b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 22 17:23:44 2007 +0000
| 
|     added the GaussianShiftKernel. Could not test it.
|     Hope it works.
| 
| A	src/kernel/GaussianShiftKernel.cpp
| A	src/kernel/GaussianShiftKernel.h
| A	src/kernel/GaussianShiftKernel.i
| M	src/kernel/Kernel.i
|  
* commit 55d0200bbc0764ad8892883abad5d185cf2a64ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 21 19:43:07 2007 +0000
| 
|     dysfunctional inital merge-try of SVMOcas
| 
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/SVMOcas.cpp
| A	src/classifier/svm/SVMOcas.h
| A	src/classifier/svm/SVMOcas.i
| D	src/classifier/svm/SVMPerf.cpp
| D	src/classifier/svm/SVMPerf.h
| D	src/classifier/svm/SVMPerf.i
| A	src/classifier/svm/qpssvmlib.cpp
| A	src/classifier/svm/qpssvmlib.h
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit da72e35a9fb962a54b3bb99f2dfc93cf8531f875
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Oct 18 14:13:00 2007 +0000
| 
|     added support for faster gram addition
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/kernel/MindyGramKernel.cpp
|  
* commit b99168dac94aa737b315de4044d02e02c26436b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 18 05:11:36 2007 +0000
| 
|     updated test used to detect recent memleak
| 
| M	python-modular/examples/check_commwordkernel_memleak.py
|  
* commit c990393b179a0f970fd1ecab900c07fa3846cdca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 18 03:39:51 2007 +0000
| 
|     fix a major memory leak (occured for all functions returning arrays to python)
|     	we still need some interface polishing here, i.e.
|     
|     	1. the array is malloc'd in the python typemaps
|     	2. the C++ functions fill in content
|     
|     	or
|     
|     	1. the C++ functions just return pointers to objects
|     	2. in the python typemaps the array is malloc'd and content is copied from
|     	the C++ functions
| 
| M	src/lib/python_typemaps.i
|  
* commit b67725ed7973e5b9ae1203c8f883cf5553077c24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 17 17:10:45 2007 +0000
| 
|     forgotten makefile
| 
| A	libshogun/examples/Makefile
|  
* commit e6fb239d9c751976c46c6399ef46bb614f43e6f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 17 17:10:27 2007 +0000
| 
|     add example for shogun's new library interface - libshogun
| 
| A	libshogun/examples/rbf_svm.cpp
| M	src/Makefile
| M	src/configure
|  
* commit 6a175f93fe2c9555904db5c667f088a957a34a85
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 14 14:03:47 2007 +0000
| 
|     add memleak test script
| 
| A	python-modular/examples/check_commwordkernel_memleak.py
|  
* commit fd92e196b0f90c6f7265bfa0e339b38f1ef59f09
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 14 08:13:10 2007 +0000
| 
|     - fix a memory leak in python modular interface (occurring with any kernel)
|     - remove some debug code
| 
| M	src/features/Features.cpp
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 520064f051d2fa4fb93b9cf661f5b81e1692f2bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 10 17:47:26 2007 +0000
| 
|     Preparing for new Release shogun_0.4.3
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
|  
* commit 20c522823e80014b52e572bd358eefa8f83d25cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 10 17:46:51 2007 +0000
| 
|     prepare for release 0.4.3
| 
| M	src/NEWS
|  
* commit 4ec12ed18b09764c49f012cc8b1bf12024eb31ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 9 14:07:48 2007 +0000
| 
|     add insertion sort
| 
| M	src/lib/Mathematics.h
|  
* commit bcbc51a83e18820abd0ff9065a48b6f3d4700746
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 13:49:36 2007 +0000
| 
|     tests for first classifier encluded
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
| A	python-modular/testcases/mfiles/svm_GaussianKernel_10_15.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 1c90c84508229e586390095c12cf8ff182ebf5aa
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 12:52:47 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
|  
* commit 7fd2c8f4be98c02b1c7fea20a2518e71f5cdb1c1
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 10:34:46 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
|  
* commit 10049d5988f0fa6118b59421c51e20589326598b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Oct 4 10:03:29 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
|  
* commit b7a27efa7fc95413b2b1fe89419f1bbd3bab8f4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 4 06:38:11 2007 +0000
| 
|     code cleanup in obtaining w - no function change
| 
| M	src/lib/Trie.cpp
|  
* commit fd23d6f1ed347a5c848421ad38d8ac0831ef238a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 3 09:54:54 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
|  
* commit e06ddd4d3fd43b9075e36d644c2e78797dc157b0
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Oct 3 09:20:30 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| A	python-modular/testcases/mfiles/WeightedDegreeStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 7e60ed596098690c85236b320b8ec570fb9b3044
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 16:15:06 2007 +0000
| 
| A	python-modular/testcases/mfiles/CommWordStringKernel_DNA_False_3_0.m
|  
* commit ab9455da13f688870cb707c9f296bde9eff14ff8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 16:14:19 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
|  
* commit eda64d7cdd2392a698030ae9e78ea0bfc33ebc43
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 15:53:41 2007 +0000
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| M	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit df0a267d52be019713a224f61ea752e59716e5eb
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue Oct 2 15:27:30 2007 +0000
| 
|     test for CommWordStringKernel added
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
|  
* commit d4a5dda3217ea7aafb8e7da2d6e7a0fe31e1d686
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 28 16:14:20 2007 +0000
| 
|     fix warnings
| 
| M	src/features/Alphabet.cpp
|  
* commit 07fcb82712a6b6ba8d242b4a178995ea76a7d322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 28 16:00:57 2007 +0000
| 
|     * allow building with custom cc settings and add option to disable cpu detection
|     * adjust R build system
|     * fix weighted commword kernel (normalization was wrong due to change in
|     		commword kernel) and add support for sliding window init
| 
| M	R/Makefile
| D	R/Makefile.sed
| A	python-modular/examples/spectrum_kernel.py
| A	python-modular/examples/weighted_spectrum_kernel.py
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 27b33bd0d669d7b6039a2b0071973a02b33e728a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 25 19:57:30 2007 +0000
| 
|     - this should fix a boundary bug in poim computation
|     - compile fix when cplex is available
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/lib/Trie.cpp
|  
* commit 2c549df9dd0c26bb5f2810d3f68156f07239a7cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 22:12:16 2007 +0000
| 
|     for future releases allow creating packages from releases
| 
| M	Makefile
|  
* commit 9b17eb4192a4102b584002831a3af7a758ec40f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 20:16:27 2007 +0000
| 
|     add version string on release
| 
| M	Makefile
|  
* commit a0b3721c0c89314bbe3bbc6ad644309cdc6b9b26
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:28:16 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
| M	R/Makefile
|  
* commit 2642d59d576424e6545e3a4c89d9f13d8c7e94f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:15:51 2007 +0000
| 
|     keep top level makefile, to allow later package building
| 
| M	Makefile
|  
* commit 56f44c2db52fdf2a59229fe73a64992912b86a9c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:10:15 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
|  
* commit 0526c141b4b0b81c519ce6dc689135b81f4292db
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:04:36 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	Makefile
|  
* commit 43b8eefcbe0c0ca732266fd11caf25ee54f90fc6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 19:02:41 2007 +0000
| 
|     compile fixes for R/python-modular/python
| 
| M	Makefile
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/Kernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/io.cpp
|  
* commit 5618e785a9d0da5796ed111828204c64ac14a47c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:28:07 2007 +0000
| 
|     fix final step in release creation
| 
| M	Makefile
|  
* commit 6f4c0e855bf7e8a341638681ca3eac52a47ac365
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:26:46 2007 +0000
| 
|     Preparing for new Release shogun_0.4.2
| 
| M	src/ChangeLog
|  
* commit 60994d387f4ab3b37f85b99e82a9f6e44ff4ef2c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 19 18:25:47 2007 +0000
| 
|     - make svn-tag-release now does a whole release (just make sure src/NEWS is updated)
|     - minor clustering fixes
| 
| M	Makefile
| M	R/sg/DESCRIPTION
| M	matlab/examples/cluster_hierarchical.m
| M	src/NEWS
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/KMeans.cpp
| M	src/lib/common.h
|  
* commit 135012fe2a8280d020869a5db4255da5ff881749
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Sep 13 16:37:20 2007 +0000
| 
|     hierarchical clustering works now
| 
| M	matlab/examples/cluster_hierarchical.m
| M	src/classifier/KNN.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/distance/Chebyshew.cpp
| M	src/distance/Distance.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUICommands.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
|  
* commit ef77211969ae1cc002377f3b7aafeef2e9041900
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 12 15:36:18 2007 +0000
| 
|     still debugging hierarchical clustering
| 
| M	matlab/examples/cluster_hierarchical.m
| M	src/clustering/Hierarchical.cpp
| M	src/clustering/Hierarchical.h
| M	src/distance/NormSquaredDistance.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 44e5ad0e20b9d5ccc62254381f692f8b08ab2227
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 12 10:22:21 2007 +0000
| 
|     add aggregative single linkage hierarchical clustering (to be debugged)
| 
| A	matlab/examples/cluster_hierarchical.m
| M	src/clustering/Clustering.i
| A	src/clustering/Hierarchical.cpp
| A	src/clustering/Hierarchical.h
| A	src/clustering/Hierarchical.i
| M	src/clustering/KMeans.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 114758fd8475d8d996a3758e1a3ccbc11ae7d0eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 10:31:17 2007 +0000
| 
|     fix clustering and random number generation for INT/DREAL
| 
| M	matlab/examples/cluster_kmeans.m
| M	src/classifier/KNN.h
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/distributions/hmm/HMM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit f1b91f46200a73eb9caf79bc0a5e9b264fa2ec4e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 08:06:39 2007 +0000
| 
|     add get_classifier support for KMeans and radius estimate fixes
| 
| M	matlab/examples/cluster_kmeans.m
| M	src/NEWS
| M	src/clustering/KMeans.cpp
| M	src/clustering/KMeans.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit 7b276bd0ff990687650047194ab00f0aacd44567
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 06:48:53 2007 +0000
| 
|     add kmeans matlab exmaple
| 
| A	matlab/examples/cluster_kmeans.m
|  
* commit 14d3ff8c55b9c4f0b6f08c12f3c91720f535421e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Sep 11 06:28:08 2007 +0000
| 
|     add clustering methods support
| 
| M	src/classifier/KNN.h
| A	src/clustering/Clustering.i
| A	src/clustering/KMeans.cpp
| A	src/clustering/KMeans.h
| A	src/clustering/KMeans.i
| M	src/distance/Distance.i
| A	src/distance/NormSquaredDistance.cpp
| A	src/distance/NormSquaredDistance.h
| A	src/distance/NormSquaredDistance.i
| A	src/distance/SparseDistance.h
| A	src/distance/SparseNormSquaredDistance.cpp
| A	src/distance/SparseNormSquaredDistance.h
| A	src/distance/SparseNormSquaredDistance.i
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SparseNormSquaredKernel.cpp
| D	src/kernel/SparseNormSquaredKernel.h
| D	src/kernel/SparseNormSquaredKernel.i
| M	src/lib/common.h
|  
* commit 0e32f64d0b5970e2a7f0b4799901da6bbaa7a3ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 21:57:53 2007 +0000
| 
|     convert Trie to template and add DNATrie, POIMTrie as examples; this is to not require the WDS kernel to use 24 extra bytes per node
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 99a6139c94f73d3626522f9e091cd3f6316932ae
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 15:33:22 2007 +0000
| 
|     use INT idx in Trie
|     fix compile warnings (gcc4.2 warns about const char*)
| 
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/gui/Python.cpp
| M	src/guilib/GUIPython.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit eb576524c00ae7b4b68c79bfba43360f78d4995a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 5 14:35:21 2007 +0000
| 
|     POIMs work...!
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 6d6aa3b710a8895136b27c33a6d68cc8e15a5de8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 3 19:05:30 2007 +0000
| 
|     fix compilation with --disable-lapack
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit f4b75094775e4832e494d88dde6373073cdb4f89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Sep 1 17:52:52 2007 +0000
| 
|     merge changes from 0.4.1 branch
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| A	matlab/examples/test_l2svm.m
| A	matlab/examples/test_svm_multiclass.m
|  
* commit b3315317879eac912f731a794e47d3414757c932
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 21:02:39 2007 +0000
| 
|     release 0.4.1
| 
| M	src/ChangeLog
|  
* commit 67747348fab30958532b99c05081dfe3dc54efb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 21:00:54 2007 +0000
| 
|     cleanups, prepare for release 0.4.1
| 
| M	src/CONTRIBUTIONS
| M	src/NEWS
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/GaussianKernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/lib/Trie.h
|  
* commit 54854a711206ecba1cb9488fc106b88d91adce65
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 13:31:06 2007 +0000
| 
|     subgradlpm interface file
| 
| A	src/classifier/SubGradientLPM.i
|  
* commit 2eea9e5117e29dcdbe17ab430486e5e754308828
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 31 13:29:36 2007 +0000
| 
|     add missing interface files
| 
| A	src/classifier/LPBoost.i
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/LibLinear.i
| A	src/classifier/svm/MPD.i
| A	src/kernel/CanberraWordKernel.i
| A	src/kernel/HammingWordKernel.i
| A	src/kernel/ManhattenWordKernel.i
|  
* commit 9d94009472ab21df2c53cc17494332f8230fe65b
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 30 16:29:55 2007 +0000
| 
|     POIMS: Enabled to output partial scores, to aid debugging.
| 
| M	matlab/examples/test_poim_wds.m
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 57c7241cb2b572f08652846cfb04131eecf8df42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 29 16:29:54 2007 +0000
| 
|     add support for POIMs and custom distributions
| 
| M	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 05ea118e0358a1bc465f107649ffedba161b439d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 29 14:57:05 2007 +0000
| 
|     move all the commands into a common header file GUICommands.h
| 
| M	src/distributions/histogram/Histogram.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| A	src/guilib/GUICommands.h
|  
* commit 0789225477daf71a1a3bc4254b197f08df153d3c
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 29 14:28:47 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 9b7abca4b5e932d2823f8fde81be9a5fc496cddc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 28 14:27:35 2007 +0000
| 
|     get poim
| 
| M	matlab/examples/test_poim_wds.m
| M	matlab/examples/test_spec_interp.m
|  
* commit 1727c3be49f134575023f84229d722eb10bdddef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 28 14:24:49 2007 +0000
| 
|     get normal support
| 
| M	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 598c6d6ef328b34f84481455900d2394e425feb5
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 28 13:33:49 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit 4ac383947866556acac3e7f4782dea499e289f51
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 28 12:44:00 2007 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit dadce6730e590ef9c9ffddd9511c1fbe05bf5f39
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 14:22:09 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 89d3cb93a9f59a67449277eef0d71662418088f5
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 14:18:38 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit 7497dacd8c2f4d8a56c3ad0fe2f2c212299989b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 24 09:50:10 2007 +0000
| 
|     add POS2_NONORM kernel
| 
| M	matlab/examples/test_poim_wds.m
| M	src/guilib/GUIKernel.cpp
|  
* commit ddb4cd1ff9ae20e9d8bb82fbaf89bdec358230bb
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 24 09:35:48 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit a09935de089b28204b74fba9b3a9bc514bf273c7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 24 05:37:10 2007 +0000
| 
|     avoid copying and directly use SparseFeatures<DREAL> in liblinear
| 
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
|  
* commit b5d6247143cc9f5c034d4bb144344e72661943aa
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:55:00 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit 42c57ff97cd376c832745be8d0ffbe3b2bfc698d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:49:41 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
|  
* commit eaaa82461a79ef18a3e417157e8f8e53b22bd6fd
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Aug 23 17:45:53 2007 +0000
| 
| M	matlab/examples/test_poim_wds.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 0c75ccda6918fec477c2d92265bf1ca7e59e25a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 23 14:32:47 2007 +0000
| 
|     finally fix SVMLin+liblinear
| 
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/Tron.cpp
|  
* commit e0945a1ca9f35526cb980d6adc382f53ae136cec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 23 07:38:55 2007 +0000
| 
|     build whole tree...
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 054624c3048e653fe69f145d47741b1d903200f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 20:41:02 2007 +0000
| 
|     test whether kernel is inited on train()
| 
| M	src/regression/KRR.cpp
|  
* commit 307d8679a010490a1674660a8f0617784650191f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 19:39:14 2007 +0000
| 
|     add compute_poim_wd test script/matlab interface access function
| 
| A	matlab/examples/test_poim_wds.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.h
|  
* commit fa48ae4c621a088eec5421290427cad0f564e452
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 18:54:16 2007 +0000
| 
|     add a combined features example
| 
| A	python-modular/examples/combined_features_svm.py
|  
* commit 02185c1d9fff4bb15a9d8c915d42a5345b831201
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 22 17:29:07 2007 +0000
| 
| M	src/lib/Trie.cpp
|  
* commit cc71728e870ac37f07e63c3320d4e17630c092a2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Wed Aug 22 17:04:50 2007 +0000
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit b6b85722623acb17f732b84e826b9d7aae6a760a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 22 16:48:55 2007 +0000
| 
|     - add python-modular support for the custom kernel
|     - lots of fixes for SVMLin / Liblinear
| 
| A	python-modular/examples/custom_kernel.py
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/Tron.cpp
| M	src/classifier/svm/Tron.h
| M	src/classifier/svm/ssl.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/CustomKernel.i
|  
* commit 8294137cfa2dfdcde13cd3d23adf74be8d6f81cd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 21 18:06:38 2007 +0000
| 
|     fix typo in configure
|     add option to disable bias in svmlin bias
| 
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
|  
* commit 12c5463c21c42ed566151e909ffa32092de3b06d
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Aug 21 17:31:17 2007 +0000
| 
| D	src/kernel/WeightedDegreePositionStringKernel.POIM.cpp
| D	src/lib/Trie.POIM.cpp
| D	src/lib/Trie.POIM.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit dbb885e701ecb1322aaf1c4b2784dd89c0f4395b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 21 12:24:17 2007 +0000
| 
|     fix the python examples/python io
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	python/examples/test_mkl.py
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/io.cpp
|  
* commit d71f8902a51a092214e3c89fa3f766715b970c70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 20 13:59:42 2007 +0000
| 
|     add liblinear L2 / LR support including example. currently data is internally
|     copied, more intrusive changes to liblinear are required to fix this:
|     
|     ( liblinear uses 1-based indices and terminates sparse vectors with -1,
|       additionally a 'bias feature' may need to be added )
| 
| A	matlab/examples/liblinear.m
| M	src/classifier/svm/LibLinear.cpp
| M	src/classifier/svm/LibLinear.h
| M	src/classifier/svm/SVM_linear.cpp
| M	src/classifier/svm/SVM_linear.h
| M	src/classifier/svm/Tron.cpp
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 467e537856ef8f030ad99cb48d45aeacecf9f655
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 17:03:29 2007 +0000
| 
|     add support for sliding window 'skip' option, which skips the first
|     n characters of the generated string (same thing as when using convert
|     		to do higher oder conversions)
|     
|     e.g. if you use:
|     sg('send_command', sprintf('convert TEST STRING CHAR STRING WORD %i %i', order, order-1));
|     
|     then for a window len of 50 the order-1 chars should be skipped:
|     sg('send_command', sprintf('slide_window TEST 50 1 %d', order-1));
|     
|     sg('from_position_list','TEST', 50, 0:(total_test_len-len-order+1), order-1);
| 
| M	matlab/examples/test_sliding_window.m
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 12ea9bf653e30f0704b80c925e9b2bb20affa2a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 16:20:21 2007 +0000
| 
|     add a sliding window test
| 
| A	matlab/examples/test_sliding_window.m
|  
* commit 5fac3fd2c49dee2c3fd3b2196265a8d06d643def
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 16:17:42 2007 +0000
| 
|     - add matlab support for get features of type string/word
|     - make POIMs work with weighted spec kernel
|     - fix further issues with sliding window/spec (works for order=1 now)
| 
| M	matlab/examples/spec_interp.m
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 61d7769ab6020443e65fd9cd30edf1b8ccf737f2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Aug 17 11:58:40 2007 +0000
| 
| A	src/kernel/WeightedDegreePositionStringKernel.POIM.cpp
| A	src/lib/Trie.POIM.cpp
| A	src/lib/Trie.POIM.h
|  
* commit c1c227dfc1cb4abb857a04310e40a36fb9b618a8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 17 11:00:58 2007 +0000
| 
|     add radix sort and make it the new default for spec* kernels, furthermore
|     add checks for spec kernel compute (whether all preprocs attached to features
|     		are actually applied). then also sort the the features when doing init
|     (potentially resolving the problem with sliding window/spec kernel)
| 
| M	matlab/examples/spec_interp.m
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWordString.cpp
|  
* commit 26d324491669910a77a52f1cfb5e431e655247f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 18:05:01 2007 +0000
| 
|     remove debug code
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 0f82a58024e87a6c5edc6cea54774ec4c95eec7b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 17:54:40 2007 +0000
| 
|     create two explamples for spec-poims: one for testing/one for a real use case;
|     compute obj for lpboost
| 
| M	matlab/examples/lpboost.m
| M	matlab/examples/spec_interp.m
| A	matlab/examples/test_spec_interp.m
|  
* commit f4a5b0aec86c5bff7d0ed1f12a963ebc2de8af88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 16 17:32:47 2007 +0000
| 
|     POIM for spec bugfixes
| 
| M	matlab/examples/spec_interp.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit a6425c1f356831f95c73e52202fdf0d354c91071
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 16 09:27:18 2007 +0000
| 
|     removed several minor but fatal bugs in Mindy distance to kernel mapping. In essence either use RBF conversion or check that the distance is a negative CPD kernel.
| 
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit d5e7d35b4826a284c900a6a1ece1c689ba5061f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 15:18:53 2007 +0000
| 
|     new trie fields
| 
| M	src/lib/Trie.h
|  
* commit bc2d19d17d5babfbeeef9b676b27aedc84e84cc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 14:19:38 2007 +0000
| 
|     rename A0 -> A_zero , B0 -> B_zero as there seems to be some
|     naming collision with numpy
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 8f0195d8ee59f9d839798d701e8ffec1e591fad9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 15 13:39:51 2007 +0000
| 
|     fix R svm example/enhance matlab veriant
|     debugging spec poims
| 
| M	R/examples/svm_classification.R
| M	matlab/examples/spec_interp.m
| M	matlab/examples/svm_classification.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit c003d2a90bf95fb64c795d393413dea9e7d0fdd3
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Mon Aug 13 08:46:16 2007 +0000
| 
|     added support for latest Mindy library
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.h
|  
* commit 14ddd23c3f3d74001be2d295f79c3e8bce881cef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 8 08:55:14 2007 +0000
| 
|     removed debug code/make toy example more convincing
| 
| M	matlab/examples/spec_interp.m
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 287f0d04d95be60c4956de3d73d5e43ec388a422
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 20:49:43 2007 +0000
| 
|     add example
| 
| A	matlab/examples/spec_interp.m
|  
* commit 486b4547ebcb519dfb4c17da2c0d41b8cf41c329
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 20:49:22 2007 +0000
| 
|     spectrum poim seems to work...
| 
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 8d7092884c921e30cb02cdb7fd45e1e59316bbc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 14:08:37 2007 +0000
| 
|     - protein alphabet is now (as all the others) only UPPERCASE
|     - add example for LA kernel
| 
| A	matlab/examples/local_alignment_kernel.m
| M	src/features/Alphabet.cpp
| M	src/kernel/LocalAlignmentStringKernel.cpp
| M	src/kernel/LocalAlignmentStringKernel.h
|  
* commit f77636de13ebd33c96e927aef2db9173da26a497
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 13:35:19 2007 +0000
| 
|     add support for JP's local alignment kernel
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.i
| A	src/kernel/LocalAlignmentStringKernel.cpp
| A	src/kernel/LocalAlignmentStringKernel.h
| A	src/kernel/LocalAlignmentStringKernel.i
| M	src/lib/common.h
|  
* commit 804fd3cbd2acd0590ea9286bf0c343c00ef356f1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 7 08:16:35 2007 +0000
| 
|     add function to compute POIM from spectrum kernel
| 
| M	src/classifier/svm/Tron.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Mathematics.h
|  
* commit 5be8d19467275e2c23a210b9a2b7af7477f71071
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Aug 6 06:39:40 2007 +0000
| 
|     add Xiang-Rui Wang and Chih-Jen Lin's
|     liblinear (for LS-logistic regression / L2 svm)
| 
| M	src/CONTRIBUTIONS
| A	src/classifier/svm/LibLinear.cpp
| A	src/classifier/svm/LibLinear.h
| A	src/classifier/svm/SVM_linear.cpp
| A	src/classifier/svm/SVM_linear.h
| A	src/classifier/svm/Tron.cpp
| A	src/classifier/svm/Tron.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 62188f55e9cd9e0cff93643818b1fb371fd097bc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 3 06:44:28 2007 +0000
| 
|     add support for BYTE/WORD/ULONG based stringfeatures for sliding
|     window/position list
| 
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit a690b91c9dd94aabac4ef91d6c33c7c411fd70f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 2 20:52:58 2007 +0000
| 
|     seems to work
| 
| M	matlab/examples/string_features.m
|  
* commit d2c34b0d8e115aa4918bd6b400abb124226ff0bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 2 20:45:42 2007 +0000
| 
|     potentially fix the erraneous delete[] happening after calling from_window_list
| 
| M	src/features/StringFeatures.h
|  
* commit 8907e2145158db459cfe504f22bc6c4950991da4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jul 31 16:34:16 2007 +0000
| 
|     fix compilation with --disable-svm-light
| 
| M	src/kernel/Kernel.h
|  
* commit ca4d62296bd5c3349152ccd27aea9d8c30dd8a1d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 16:52:38 2007 +0000
| 
|     cplex 10 compat fixes as suggested by Gorden Jemwa
| 
| M	src/configure
| M	src/lib/Cplex.h
|  
* commit 6eb60e02e97358fbcabd8c9e8c4ccda549f5c8b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 14:13:38 2007 +0000
| 
|     merge changes from 0.4.0
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	src/Makefile
|  
* commit 25dd2edc5cd6b4e9f132482bcd08ee78798cf6b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 13:02:20 2007 +0000
| 
|     release 0.4.0
| 
| M	src/ChangeLog
| M	src/Makefile
|  
* commit b01b53e4ddd46fc29391bf9fb775569261018356
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 12:36:07 2007 +0000
| 
|     update changelog
| 
| M	src/ChangeLog
|  
* commit c9a7e361046256882d5f74da55d2367abefedaaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 12:31:14 2007 +0000
| 
|     marking 4.0
| 
| M	Makefile
|  
* commit 00c417640d14a06625ba182a25ba9284d0f2fd48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:55:39 2007 +0000
| 
|     set default gcc first
| 
| M	src/configure
|  
* commit 22dee16e2419a715cee938393024c0f7e2e47aea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:49:38 2007 +0000
| 
|     add four MKL examples
| 
| M	matlab/examples/lpboost.m
| M	matlab/examples/lpm.m
| A	matlab/examples/mkl_classify_christmas_star.m
| A	matlab/examples/mkl_pseudo_dna.m
| A	matlab/examples/mkl_regression_3sine_waves.m
| A	matlab/examples/mkl_regression_sine.m
|  
* commit d25a2bc5b14296bd29d85e24df97b59ff316201d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:15:04 2007 +0000
| 
|     forgotten break in pthread detection
| 
| M	src/configure
|  
* commit 3a67c6d192d4f2fc23ceebe198cab224c48acdbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 30 10:12:23 2007 +0000
| 
|     some cygwin/solaris configure fixes
|     
|     (though it still won't compile using solaris' compiler as it does not support
|      dynamic argument macros)
| 
| M	src/configure
|  
* commit c9757ff0e61d60f6edf8710ecaf1581a2d13ae78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 29 11:57:20 2007 +0000
| 
|     remove undefined suppress from configure
| 
| M	src/configure
|  
* commit 61c3df995fb287f3b0d33a0ddbb783693f59cd6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 29 10:49:28 2007 +0000
| 
|     fix the remaining python-modular interface examples
| 
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wd_kernel_svm_linadd_batch.py
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVM_light.cpp
|  
* commit a1f1a89340b9f5531ea8be41f926dae38dc119e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 22:43:38 2007 +0000
| 
|     many python-modular fixes - todo: wd kernels
| 
| M	python-modular/examples/multiple_svms_matplotlib.py
| M	python-modular/examples/numpy_krr_sinc.py
| M	python-modular/examples/numpy_svr_sinc.py
| D	python-modular/examples/spec_kernel.py
| M	python-modular/examples/wd_kernel_svm.py
| M	python-modular/examples/wds_kernel.py
|  
* commit 49638a8d0cbebfd3cec4de19a001e40a56315cd3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 20:12:41 2007 +0000
| 
| M	matlab/examples/test_complex_scenario.m
|  
* commit a48d0af28fc825fae2ea6378fb44692c47f46e98
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 20:12:28 2007 +0000
| 
|     fix get_svm for octave
| 
| M	matlab/examples/test_complex_scenario.m
| M	src/guilib/GUIOctave.cpp
|  
* commit 41c1f609d7e4288d7a3e8dbe5ccc81735805530f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 19:11:56 2007 +0000
| 
|     * argh, fix bug in spec kernels: normalize functions needs lhs on add_to_normal
|     and rhs on compute optimized
| 
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit 1400a610773505b8e6c411e6ff4a0d0a7b416a6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 28 17:20:49 2007 +0000
| 
|     fix oneclass svm bug
| 
| M	src/classifier/Classifier.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit 0f00c0c8ccd86250b7f287fd96b1217cc50223ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 22:39:34 2007 +0000
| 
|     * fix many of the script errors for matlab/octave,
|     	currently crashing: test_one_class_svm.m test_complex_scenario.m
| 
| M	octave/examples/hmm.m
| M	octave/examples/markov_chain.m
| M	octave/examples/wds_kernel.m
| M	src/classifier/KNN.h
| M	src/classifier/Perceptron.h
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GMNPSVM.h
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM_multiclass.h
| M	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/SVMPerf.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/lib/Trie.cpp
| M	src/lib/common.h
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.h
|  
* commit 7e49a887c0616e6a9f25051ef20f60c396083f13
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 18:14:51 2007 +0000
| 
|     * fix compilation error in old python interfacew
|     * fix warning in new python interface
| 
| M	src/guilib/GUIPython.cpp
| M	src/kernel/Kernel.i
|  
* commit 95b3ad040bc2a59e2b65a0dca59a33245a30c466
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jul 27 17:07:42 2007 +0000
| 
|     * update NEWS
|     * fix remaining CharKernel occurances
| 
| M	src/NEWS
| M	src/kernel/FixedDegreeStringKernel.i
| M	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 3fd465e7c9aa25cac57638aebe23a49d1169e2dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 26 17:56:40 2007 +0000
| 
|     fix test script
| 
| M	matlab/examples/test_weighted_spectrum.m
|  
* commit c5deabaa3d11a158576e4fbed73ee221fccde0c9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 23 15:30:23 2007 +0000
| 
|     + add linadd functionality + svm test case/example
| 
| A	matlab/examples/test_weighted_spectrum.m
| A	matlab/examples/weighted_spec.m
| M	src/features/StringFeatures.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 86cc4784b762ee34a62d4bfa5b593afbc6b35569
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jul 22 13:19:10 2007 +0000
| 
|     an example on how to use the weighted spectrum kernel
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.h
| M	src/kernel/WeightedCommWordStringKernel.cpp
|  
* commit 459afad46f040a8fd96e791feb22b2d3520384fd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 21 12:08:22 2007 +0000
| 
|     - update octave example
|     - approaching the WDCWS kernel :-)
| 
| M	octave/examples/spec_kernel.m
| M	python-modular/examples/wd_kernel.py
| M	src/kernel/WeightedCommWordStringKernel.cpp
| M	src/kernel/WeightedCommWordStringKernel.h
|  
* commit 02654d041df2e2ecb5557345bdf904a1f2f3131d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 21 10:59:21 2007 +0000
| 
|     - remove Spectrum Kernel / suffix arrays due to licensing conflict (MPL vs. GPL)
|     - remove CommWord kernel
|     - add WeightedCommWordString Kernel
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| D	src/kernel/CommWordKernel.cpp
| D	src/kernel/CommWordKernel.h
| D	src/kernel/CommWordKernel.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SpectrumKernel.cpp
| D	src/kernel/SpectrumKernel.h
| D	src/kernel/SpectrumKernel.i
| A	src/kernel/WeightedCommWordStringKernel.cpp
| A	src/kernel/WeightedCommWordStringKernel.h
| A	src/kernel/WeightedCommWordStringKernel.i
| M	src/lib/common.h
| D	src/lib/suffixarray/BWT.cpp
| D	src/lib/suffixarray/BWT.h
| D	src/lib/suffixarray/BoundedRangeWeight.cpp
| D	src/lib/suffixarray/BoundedRangeWeight.h
| D	src/lib/suffixarray/ChildTable.cpp
| D	src/lib/suffixarray/ChildTable.h
| D	src/lib/suffixarray/ConstantWeight.cpp
| D	src/lib/suffixarray/ConstantWeight.h
| D	src/lib/suffixarray/DataType.h
| D	src/lib/suffixarray/ESA.cpp
| D	src/lib/suffixarray/ESA.h
| D	src/lib/suffixarray/ErrorCode.h
| D	src/lib/suffixarray/ExpDecayWeight.cpp
| D	src/lib/suffixarray/ExpDecayWeight.h
| D	src/lib/suffixarray/I_LCPFactory.h
| D	src/lib/suffixarray/I_SAFactory.h
| D	src/lib/suffixarray/I_WeightFactory.h
| D	src/lib/suffixarray/InductionSort.cpp
| D	src/lib/suffixarray/InductionSort.h
| D	src/lib/suffixarray/IntroSort.h
| D	src/lib/suffixarray/KSpectrumWeight.cpp
| D	src/lib/suffixarray/KSpectrumWeight.h
| D	src/lib/suffixarray/LCP.cpp
| D	src/lib/suffixarray/LCP.h
| D	src/lib/suffixarray/MSufSort.cpp
| D	src/lib/suffixarray/MSufSort.h
| D	src/lib/suffixarray/SConstruct
| D	src/lib/suffixarray/Stack.h
| D	src/lib/suffixarray/W_kasai_lcp.cpp
| D	src/lib/suffixarray/W_kasai_lcp.h
| D	src/lib/suffixarray/W_msufsort.cpp
| D	src/lib/suffixarray/W_msufsort.h
| M	src/preproc/SortWordString.cpp
|  
* commit b792a51463e82b6ad9fd978beb3ed2f0f258b6e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jul 12 09:44:01 2007 +0000
| 
|     fix warning in base/SGObject
| 
| M	src/base/SGObject.h
|  
* commit 3c6efd954f69b2abda76410a17650211dca8f3ca
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jul 11 14:50:58 2007 +0000
| 
|     fixed minor compilation problem
| 
| M	src/lib/Mathematics.cpp
|  
* commit b3cdb4cf510470c4db7d203df4de6991a3942b34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jul 9 09:29:38 2007 +0000
| 
|     code cleanup for sparse/linear kernels
| 
| M	src/configure
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
|  
* commit 3c8b7270fae27840b09ac5746c3a791c1c9b51fb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jul 8 13:44:42 2007 +0000
| 
|     added a missing case switch.
| 
| M	src/kernel/Kernel.cpp
|  
* commit 362a9421c2e7a7db6a989dc6d30b6ec12e284826
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 18 12:45:38 2007 +0000
| 
|     fix syntax error in configure
| 
| M	src/configure
|  
* commit 13a67e856a27db276f5a60e14b8c28b60d8e74e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 18 09:22:41 2007 +0000
| 
|     split asserts and don't fail if string is already a sling window
|     string and shorter than window len
| 
| M	src/features/StringFeatures.h
|  
* commit 7fe91b9b2d7129390cd6fc62884b5ae84bed3256
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jun 16 17:40:21 2007 +0000
| 
|     gcc-4.2 warning fixes
| 
| M	doc/doxygen/Doxyfile
| M	src/NEWS
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 4c7697456426c4df5f7c5febb6c28ef3421bbdf9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 07:52:16 2007 +0000
| 
|     implement time limit also for subgradientsvm/lpm
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 6e64f26512653a948b4d7c4617ba02e9dd95e679
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 07:28:08 2007 +0000
| 
|     allow setting training time limit for LPM/LPBoost
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 8ad7cba4f9c0cdad48f89c5ff0a66b05e5533208
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 06:04:09 2007 +0000
| 
|     use abs(alpha*norm(w)^2) ... note that with floats abs may be negative
|     for values very close to zero
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit caeea7eced95defc1e1ab250c416869631ede1b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 05:09:26 2007 +0000
| 
|     remove <1e-6
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 4e120cc1ecb23f9aaf4011eb99872c985bdf760b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 7 05:01:22 2007 +0000
| 
|     argh, need to use abs(alpha) in convergence crit. of course
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 64f26aaed18a88190ad82ce91a1494d701013273
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 16:25:37 2007 +0000
| 
|     use speedups from subgradientsvm
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/guilib/GUIClassifier.cpp
|  
* commit e301c079addd9030854c0ac67ed44f1330c7d42e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 13:13:10 2007 +0000
| 
|     don't allocate columns on stack (fixes lpboost crash)
| 
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
|  
* commit 2922b5f13dce92008dba756744eae796f60bd767
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 09:02:23 2007 +0000
| 
|     uncomment debug code
| 
| M	src/lib/Cplex.cpp
|  
* commit 6bf39b3dafc35df6267afe6069dd86b8b2a0ba3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 6 07:36:55 2007 +0000
| 
|     use cplex result directly
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
|  
* commit 072648650fefb852deb0d168b6bb044aba3de28d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 21:04:50 2007 +0000
| 
|     still not 100% the same
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/lib/Cplex.cpp
|  
* commit d3ecacec488fdee871930114e101bafa1f5e920e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 18:49:48 2007 +0000
| 
|     add further ASSERTS
| 
| M	src/lib/Cplex.cpp
|  
* commit 89e240117d9e4611447d5d9dfb270fbf76f23bef
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 17:32:42 2007 +0000
| 
|     subgradLPM works now on 2d toy data
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
|  
* commit 7debdc164ef73c10e681193f7d8f832dff111128
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 15:15:52 2007 +0000
| 
|     finding minimum subgradient seems to work now... now for the line search
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 6bb77e5c49856d50d9c05a9a9d66f4f8226ea5ac
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 13:26:20 2007 +0000
| 
| M	src/classifier/SubGradientLPM.cpp
|  
* commit 1d46c2f36d67a00a7d20984cbcb9294eb56517a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 5 13:04:21 2007 +0000
| 
|     debuggin...
| 
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit b0c5fd593772a1f1caee5b077fe86fb9672354cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 16:50:12 2007 +0000
| 
|     still not even close
| 
| M	src/classifier/SubGradientLPM.cpp
| M	src/classifier/SubGradientLPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 277a26e4884c4503f78e487b75cf4124646ceb9d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 14:42:14 2007 +0000
| 
|     - fix lpboost now for the subgradientlpm
| 
| M	matlab/examples/lpboost.m
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit c11ec2cd1c88b803e0c0942a45a6e6fce6e0f079
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 09:13:50 2007 +0000
| 
|     add stubs for SubGradientLPM
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/LPBoost.cpp
| A	src/classifier/SubGradientLPM.cpp
| A	src/classifier/SubGradientLPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/common.h
|  
* commit 5d789976a221d6f156028d41cfa905eedd3cdef0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 4 05:45:56 2007 +0000
| 
|     lpboost still not working correctly...
| 
| M	src/classifier/LPBoost.cpp
| M	src/lib/Cplex.cpp
|  
* commit 791fd56a574c60504fa4b54f9236565516292cce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 21:12:12 2007 +0000
| 
|     add lpboost code, I've yet to understand how to obtain the result...
| 
| A	matlab/examples/lpboost.m
| M	matlab/examples/lpm.m
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 3031d103d8f0d741e3d340f075f27aa0302c1d90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 16:54:13 2007 +0000
| 
|     LPM works now, now for LPBoos
| 
| A	matlab/examples/lpm.m
| M	src/classifier/LPM.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 561dc2bf71a3966e8165c7c77813d3de810d1d0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 14:34:08 2007 +0000
| 
|     + get_transpose() in sparse features
|     + wrap LPM
| 
| M	src/classifier/LPBoost.cpp
| M	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit c4ce833703e553155db085ab421f171c83a3166d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 3 09:42:36 2007 +0000
| 
|     +stubs for LPM/LPBoost, doing LPM now
| 
| A	src/classifier/LPBoost.cpp
| A	src/classifier/LPBoost.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/common.h
|  
* commit 8255e669d993962203861493587be4b9690c60ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 14:15:33 2007 +0000
| 
|     still playing with convergence criterion
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
| M	src/lib/Mathematics.h
|  
* commit 99ce50f042d37ae46ba0bf9e58cb96f675d12702
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 06:39:39 2007 +0000
| 
|     add svm_use_bias option, and support in svm_light/subgradient svm
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
|  
* commit 380d7abdef256842c5e78becf2f769e61bffe9cc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 31 05:51:58 2007 +0000
| 
|     option to disable bias
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
|  
* commit cdf7fde98a292be1d9eda448d005c64197bcdf51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 30 11:47:25 2007 +0000
| 
|     playing with convergence criterion
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 333913220e6c2df1476e0a27ca12ec743484777c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 29 19:17:50 2007 +0000
| 
|     - fix early convergence of subgradient svm
|     - fix double free in wd kernel
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/kernel/WeightedDegreeStringKernel.cpp
|  
* commit 03f6146c761c7eaf84c5efec270f65fd76454bcc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 28 17:34:00 2007 +0000
| 
|     forgot to check in matlab build fix:
|     
|     #if !defined(MX_API_VER) || MX_API_VER<0x07040000
|     
|     then define mwSize to be INT etc...
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/matlab.h
|  
* commit 2fab2e054e90d15a4b4360941295690306ea1e59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 20:03:22 2007 +0000
| 
|     -correct copyright
|     -add ctrl+c etc support to GPBTSVM
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
|  
* commit c4cf8ea05033b1ac02eb2d6ba69d257800cf9580
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 14:06:47 2007 +0000
| 
|     make sparse matrices work with matlab 7.4
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/matlab.h
|  
* commit ef9f21d04b9bdd28042dbc5d8b3e25d050287e4b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 10:43:02 2007 +0000
| 
|     - fix & test get/set features for sparse vectors
|     - cleanup get/set features for dense vec's (lets hope no bugs)
|     - subgradsvm: check for overlap between qp's
| 
| M	matlab/examples/test_sparse.m
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Mathematics.cpp
|  
* commit 944a125514454e2c00270ad3a0ca1c3abbd53ef0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 08:01:36 2007 +0000
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 730d1472825195f1fe20dbfce19fb16a9822afaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 25 06:21:00 2007 +0000
| 
|     add sparse matrix matalb i/o support
| 
| A	matlab/examples/test_sparse.m
| M	src/guilib/GUIMatlab.cpp
|  
* commit ece0b306171dc23fb32bd821ea4a4a6b45952a7d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 22:07:16 2007 +0000
| 
|     add gradient descent
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
|  
* commit 8ab3d070349675a05e0664a964cbd924758aedfd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 20:05:31 2007 +0000
| 
|     compute only 1/2 of the Q matrix
| 
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 5565b4e2374ddff9afd9ecc9e7ec299fdd4fe111
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:51:11 2007 +0000
| 
|     use gauss seidel by default
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Mathematics.h
|  
* commit 3a831ab354b7a7805342e7751a641c0a36b4da55
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:11:17 2007 +0000
| 
|     implement greedy gauss seidel
| 
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
|  
* commit 780e258dce2a1070f6f64dee2f2c9f262a164deb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 17:06:31 2007 +0000
| 
|     - let cplex timeout after 0.5 seconds
|     - option to set max qpsize in subgradientsvm
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/Cplex.cpp
|  
* commit 415d095c52f263ed07c7ba6943c15bbf05ef81f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 24 04:57:13 2007 +0000
| 
|     update gpbt svm to version nov 2006 (released in january 2007)
| 
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
|  
* commit 865da19a632eaf228a9c5da6586f34fea4e2e71e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 18:05:57 2007 +0000
| 
|     - update subgradient svm example
|     - fix objective comput. for subgradient svm
|     - introduce limit to qpsize. if we cannot solve the problem with
|     500 vectors at bound we choose a random but valid subgradient
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 95db0ac430456eea20e3a8316967d2498081d6dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 13:20:55 2007 +0000
| 
|     - assign seperate types for sparselinear and sparsegaussian kernel
|     - support get_kernel_optimization for sparse linear kernel
|     
|     huh ?? gpbtsvm seems quite a bit faster than svmlight !!
| 
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/lib/common.h
|  
* commit da2cffbe6898f41da334e2501675f72759e36e12
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 10:19:57 2007 +0000
| 
|     linadd fix #1
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
|  
* commit e9d256a909f68209bc1ebebc4fb896539ca03af1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 10:03:04 2007 +0000
| 
|     * enable linadd for GPDT svm
| 
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
|  
* commit 2655cbea0dc7aa1f7e73a05fc7a1c2cdff47abb2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 23 08:40:23 2007 +0000
| 
|     make qpsize configurable
| 
| M	src/classifier/svm/SubGradientSVM.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit ab61a6adc7fd213e5293fe3d270ec0a04a4e1459
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 18:46:09 2007 +0000
| 
|     remove debug output & cleanups
| 
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 3677a1151be3ed1e3f943d3f52ef044eeb4648e5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 18:11:13 2007 +0000
| 
|     playing with covertype...
| 
| M	matlab/examples/test_subgradsvm.m
|  
* commit a20515d75f1418a57dddaea8aa316f4f27556994
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 16:10:53 2007 +0000
| 
|     muten subgrad svm
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 47eaf95d09262117eae6412840e15a554e35ab42
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 11:06:46 2007 +0000
| 
|     ...debugging...
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 818eecdf1ea36a3fb3c021df29a1109f1740df1e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 09:15:07 2007 +0000
| 
|     potential cplex fix
| 
| M	src/lib/Cplex.cpp
|  
* commit f9d27570b1ab780542dd967cb1ed31c21789974b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 08:58:25 2007 +0000
| 
|     debugging...
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 0b6aa7622aa31bf223438f16a81af50c60e7fd0a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 22 06:45:01 2007 +0000
| 
|     cplex dense_to_cplex_sparse fix
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/lib/Cplex.cpp
|  
* commit 59906b3bb78cf7b41d7fa7b89b007fb6cbe3b488
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 20:26:56 2007 +0000
| 
|     - add lp and qp wrappers for cplex
|     - add cplex as a method in qpbsvmlib
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
|  
* commit 17af76764a34f5c4658371cac4b78717873b30d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 11:00:59 2007 +0000
| 
|     fix cplex autodetection
| 
| M	src/configure
|  
* commit 906cdae53559f4ef7618c0a61add44a52b98ee88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon May 21 10:01:07 2007 +0000
| 
|     fix uninitialised variables
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
|  
* commit 217178ae0312702f318415686e9ac5155ca027df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat May 19 07:12:11 2007 +0000
| 
|     * fix copyright in grad proj techn. svm
|     * add pr_loqo to qpbsvmlib
| 
| M	matlab/examples/test_subgradsvm.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/structure/Plif.cpp
|  
* commit 171b87dfe1529546c7d59a81f7f4cc9a10451ede
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 18 13:18:19 2007 +0000
| 
|     * fix matlab7.4 warnings (INT casts...)
|     * change argument order of vec1_plus_scalar_times_vec2
|     * turn pr_loqo warnings into debug messages
|     * add generic [bias,weights]=sg('get_classifier') call
|     * autoadjust epsilon for subgradient svm
| 
| A	matlab/examples/test_subgradsvm.m
| M	src/classifier/LinearClassifier.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/Mathematics.h
|  
* commit 85dfa6834265d63be5f728e7052ae9c89b2aa247
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 20:20:41 2007 +0000
| 
|     synonymize SVMLIGHT with LIGHT for compatibility
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 3409aaa62eb1fcc42f2048d89b46de5b38a8e00e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 10:33:33 2007 +0000
| 
|     fix get_matrix stuff
| 
| M	R/testcases/read_mfile.R
| M	R/testcases/run.sh
| M	R/testcases/test_kernels.R
| M	src/guilib/GUIR.cpp
|  
* commit f84e9d3c34cc0be4b71033b947b0ba3330872719
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Tue May 15 09:27:32 2007 +0000
| 
| M	R/testcases/test_kernels.R
|  
* commit 52ae72b560273171cce73ec22bf4fd2f5d44899a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 15 09:16:11 2007 +0000
| 
|     R test update
| 
| M	R/testcases/run.sh
| M	R/testcases/test_kernels.R
| M	matlab/examples/test_sparse_methods.m
| M	src/Makefile
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit f8a7ea2b043b29c38103d7d40221e9e87b783c1b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Mon May 14 14:00:33 2007 +0000
| 
| M	R/testcases/test_kernels.R
|  
* commit be08ca64590cc6f4e3d99e6cf333332d74af1146
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 17:38:27 2007 +0000
| 
|     classifier interface build fixes for R/Octave
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit 94ebad0c11abcb0250bd9b4cd714aef85aafabe0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 15:50:30 2007 +0000
| 
|     add problematic example
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/svm/SubGradientSVM.cpp
|  
* commit 83c1bc6eb45b796511f0acbe9954d40601019010
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri May 11 15:03:06 2007 +0000
| 
|     -remove guisvm
|     -convert everything to work with guiclassifier
|     -fix subgradientsvm
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/LDA.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/features/SparseFeatures.h
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| D	src/guilib/GUISVM.cpp
| D	src/guilib/GUISVM.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/lib/Mathematics.h
|  
* commit bb1b47910366cfd90780e51db1371c157b3bb9cc
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Fri May 11 12:37:16 2007 +0000
| 
| M	R/testcases/read_mfile.R
| M	R/testcases/test_kernels.R
|  
* commit 2f6e17383333d9c3c85b9924398b527601fa07da
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 20:54:05 2007 +0000
| 
|     - fix valgrind errors
|     - add classifier interface to octave
| 
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
|  
* commit 8e6333e029c62b9b669b7490e458245ba5d5ec78
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 16:00:50 2007 +0000
| 
|     ...debugging
| 
| A	matlab/examples/test_linear_methods.m
| M	matlab/examples/test_sparse_methods.m
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/features/SparseFeatures.h
| M	src/guilib/GUIClassifier.cpp
|  
* commit dbcc10a2d3d7045137ec6e5cb346353fb9fa3d48
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:57:15 2007 +0000
| 
| D	R/testcases/test_chi2_kernel.m
| D	R/testcases/test_gaussian_kernel.m
| D	R/testcases/test_kernels.m
| D	R/testcases/test_linear_kernel.m
| D	R/testcases/test_octave.m
| D	R/testcases/test_poly_kernel.m
| D	R/testcases/test_sigmoid_kernel.m
| D	R/testcases/test_wdchar_kernel.m
|  
* commit 645dc7512fa954d099954050ffbf139d7beb0ed6
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:50:00 2007 +0000
| 
| A	R/testcases/test_kernels.R
|  
* commit a225bd2291a7cfa4651b49c9c544c414fd1c6749
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:49:10 2007 +0000
| 
| A	R/testcases/read_mfile.R
|  
* commit 6e6276709ad4bd79a8f5823f26605184becb7d3e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:48:50 2007 +0000
| 
| A	R/testcases/test_R.R
|  
* commit 73f5f37ed7fc6af15a39f66b733a5eaccae5133e
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu May 10 14:27:47 2007 +0000
| 
|     framework OK, tests not yet implemented
| 
| A	R/testcases/run.sh
| A	R/testcases/test_chi2_kernel.m
| A	R/testcases/test_gaussian_kernel.m
| A	R/testcases/test_kernels.m
| A	R/testcases/test_linear_kernel.m
| A	R/testcases/test_octave.m
| A	R/testcases/test_poly_kernel.m
| A	R/testcases/test_sigmoid_kernel.m
| A	R/testcases/test_wdchar_kernel.m
|  
* commit d19f86c140649508c44b4c63866e5e9e1c78cff9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 13:00:29 2007 +0000
| 
|     remove unused variable
| 
| M	src/guilib/GUIClassifier.cpp
|  
* commit 0c03469aba79a7b8c4677eb44a171d7dc70a4cb5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 12:58:50 2007 +0000
| 
|     fix a LDA bias sign bug
| 
| A	matlab/examples/lda_classification.m
| M	matlab/examples/wds_consensus.m
| M	src/classifier/LDA.cpp
| M	src/guilib/GUIClassifier.cpp
|  
* commit 9a9d4b968969c79b34769add4864da22b3121f30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu May 10 12:23:55 2007 +0000
| 
|     generic sg('new_classifier FOO') / sg('classify')
|     functionality for lots of FOO
| 
| A	matlab/examples/test_sparse_methods.m
| M	src/classifier/LDA.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/classifier/svm/qpbsvmlib.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/lib/Mathematics.h
| M	src/lib/common.h
|  
* commit 162f65fc662a714a5f1ff3918031c0eadb3a2199
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 9 14:02:16 2007 +0000
| 
|     make gbpsvmlib/gmnplib use CMath::max/min/abs
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/qpbsvmlib.cpp
| M	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Mathematics.h
|  
* commit da017db2b91e720bce56708606580dd7285e7b54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed May 9 07:18:17 2007 +0000
| 
|     add vojtechs QP solver
| 
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| A	src/classifier/svm/qpbsvmlib.cpp
| A	src/classifier/svm/qpbsvmlib.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 1bb7427f67ecc55acc3a572d7c4513a184f1780b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue May 8 21:30:19 2007 +0000
| 
|     add helper functions for sparse feature vectors:
|     
|     to compute dot products:
|      sparse x sparse
|      sparse x dense
|     to add sparse vectors to dense ones
|     
|     and let the sparse linear/poly kernel make use of them
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVMPerf.cpp
| M	src/classifier/svm/SubGradientSVM.cpp
| M	src/classifier/svm/SubGradientSVM.h
| M	src/features/SparseFeatures.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparsePolyKernel.cpp
| M	src/lib/Mathematics.h
|  
* commit 1e9e92d7d57d8d638d9d96084234ab7bac078147
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:41 2007 +0000
| 
| M	matlab/examples/test_wdshift_position_weights.m
|  
* commit bf90ba0e7f526cc589fb31c31981ec20641541c5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:21 2007 +0000
| 
|     Implemented extensions in order to allow position weights per example.
|     Unsolved issues:
|     * normalization -> switch it off
|     * linadd & batch_computation -> switch it off
|     
|     An example script is given in matlab/examples/test_wdshift_position_weights.m.
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit e9cbd5dff0ee09581cbe1b69a06b3d8e2f8b3265
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon May 7 17:43:09 2007 +0000
| 
|     Implemented extensions in order to allow position weights per example.
|     Unsolved issues:
|     * normalization -> switch it off
|     * linadd & batch_computation -> switch it off
|     
|     An example script is given in matlab/examples/test_wdshift_position_weights.m.
| 
| A	matlab/examples/test_wdshift_position_weights.m
|  
* commit aa88ca14eb3aed9946a1b67ca3ef9cdbbc2c448e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 13:54:10 2007 +0000
| 
|     this infact is a scenario running on 4 threads, with lots of kernels and
|     chained preprocessors.  some kernels support linadd, some batch computation
|     (linadd/batch is all emulated for kernels that don't support it). so if this
|     works we have a good indication that lots of other stuff will
| 
| A	matlab/examples/test_complex_scenario.m
| D	matlab/examples/test_wdshift_kernel.m
|  
* commit 03b8dc3e7c8ed9fbb8a93d42cd9561976d9b0493
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 13:50:45 2007 +0000
| 
|     - fix threading bugs in WDS kernel (it was never working correctly with > 1
|     		thread), due to position_mask and max_shift vec being member variables.
|     
|     solution: make max_shift_vec a local variable and remove (the anyway unused)
|     	position_mask completely
| 
| A	matlab/examples/test_wds_kernel.m
| M	matlab/examples/test_wdshift_kernel.m
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 050f0408ebb9d04411866aa682fa6ee1150aae40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 07:51:13 2007 +0000
| 
|     print normalization_cons
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 22c7fd3a41375682fe1e89948196d5c98c487d01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 30 07:41:33 2007 +0000
| 
|     forgot adding lin contributions for last thread
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
|  
* commit e3cdc9ed4117fb7b67d3c311da9720ae4a7e03a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 18:59:18 2007 +0000
| 
|     Fixed a stupid (variable name collision, t was used for time and threads in 2
|     		nested loops) SVM light training bug which occurred only with
|     
|     	threads>=2,
|     	linadd=0,
|     	batch_computation=0
|     	svm -> reactivate_inactive examples
|     
|     (got triggered by the test_wd_wds_parallel.m example). Judging from (previous)
|     comments in the code it looks like Gunnar has seen this at some point but
|     forgot to tell me...
| 
| M	matlab/examples/test_wd_wds_parallel.m
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 842600acfddbf69d30487911f1a59987bdbc8000
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 17:07:10 2007 +0000
| 
|     * remove obsolete/nonworking examples
|     * adjust examples to work with new stringfeatures
|     * fix one class svm crasher
| 
| M	matlab/examples/entropy.m
| D	matlab/examples/svmlight_hang_test.m
| M	matlab/examples/test_combined.m
| M	matlab/examples/test_combined2.m
| M	matlab/examples/test_custom_kernel.m
| D	matlab/examples/test_hmm.m
| D	matlab/examples/test_hmm_matlab.m
| M	matlab/examples/test_kernel_optimization.m
| D	matlab/examples/test_matlab_interface.m
| M	matlab/examples/test_one_class_svm.m
| D	matlab/examples/test_rbf_kernel.m
| M	matlab/examples/test_regression_linadd.m
| D	matlab/examples/test_svm.m
| M	matlab/examples/test_wd_linadd.m
| M	matlab/examples/test_wdshift_kernel.m
| D	matlab/examples/test_wdshiftphyl_kernel.m
| M	matlab/testcases/test_wdchar_kernel.m
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/guilib/GUIFeatures.cpp
|  
* commit ac309f569feb2c6e250f69f7ca584de366191bc0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 29 12:37:41 2007 +0000
| 
|     * remove PHYL kernel completely
|     * remove nonsense normalisation in WD*kernels (sqrtdiag lhs/rhs etc),
|     	the wd/wds kernel really need merging
|     * fix test_wdshift_kernel script
|     * add stubs for vojtechs subgradient svm and svmperf
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.i
| A	src/classifier/svm/SVMPerf.cpp
| A	src/classifier/svm/SVMPerf.h
| A	src/classifier/svm/SVMPerf.i
| A	src/classifier/svm/SubGradientSVM.cpp
| A	src/classifier/svm/SubGradientSVM.h
| A	src/classifier/svm/SubGradientSVM.i
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreeStringKernel.cpp
| M	src/kernel/WeightedDegreeStringKernel.h
| M	src/lib/common.h
|  
* commit a7637d3bfccd661493e907b417ac72440fe2ee6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 10:10:17 2007 +0000
| 
|     fix the 2-class case by introducing sign=model->label[0]
| 
| M	src/classifier/svm/LibSVM.cpp
|  
* commit e13d0fdb731ece63d5a98b6e26682991509399b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 09:50:49 2007 +0000
| 
|     * multiclass libsvm fix for label permutations:
|     	libsvm internally relabels all examples and stores that label in model->label.
|     	thus the svm pair (i,j) translates to (model->label[i], model->label[j]), so
|     	the solution is to compute the svm index for the
|     	(model->label[i], model->label[j]) pair
|     * note that if (model->label[i] > model->label[j]), signs have to be flipped, which
|     also occured to us in the 2-class case, as libsvm internally uses +1 for the first
|     occuring class and -1 for the other (which is why have to flip signs if the
|     		first label<0) for 2-class problems too.
|     * apapart from that it delivers very similar results to vojtech's L2-multiclass b-svm
| 
| M	src/classifier/svm/LibSVM_multiclass.cpp
|  
* commit dc0a3562bfbf69e0c598c10866f147d5d5395af9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Apr 25 08:32:01 2007 +0000
| 
|     * add LibSVM multiclass support + test script
|     * currently labelings maybe shuffled similiar to what we had with 2-class libsvm
|     * reshuffle python classifiers/regressors, add the other missing svms to the python interface
|     * apply dos2unix on gmnp svm
| 
| M	matlab/examples/svm_multiclass.m
| M	src/classifier/Classifier.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.i
| M	src/classifier/svm/GNPPSVM.i
| A	src/classifier/svm/GPBTSVM.i
| M	src/classifier/svm/LibSVM.i
| A	src/classifier/svm/LibSVM_multiclass.cpp
| A	src/classifier/svm/LibSVM_multiclass.h
| A	src/classifier/svm/LibSVM_multiclass.i
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| A	src/classifier/svm/LibSVM_oneclass.i
| M	src/classifier/svm/MultiClassSVM.cpp
| M	src/classifier/svm/MultiClassSVM.h
| A	src/classifier/svm/MultiClassSVM.i
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVMLin.i
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.i
| M	src/classifier/svm/gmnplib.cpp
| M	src/distance/DistanceMachine.i
| M	src/guilib/GUISVM.cpp
| M	src/kernel/KernelMachine.i
| M	src/lib/common.h
| M	src/regression/Regression.i
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.i
| M	src/regression/svr/SVR_light.i
|  
* commit 23bb5d30eadd63fa6c59ce08f06f108acd103bc8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 23 13:48:05 2007 +0000
| 
|     * add shrinking method of libsvm 2.84
|     * implement end test 'finding the most likely sequence'
|       for spectrum kernel
|     * add sg('get_SPEC_consensus') command + matlab example,
|     * fix svm_lin/svm .py scripts (axis tight/dynamically adjust interval)
| 
| A	matlab/examples/test_spec_consensus.m
| M	python-modular/examples/numpy_svm_matplotlib.py
| M	python-modular/examples/numpy_svmlin_matplotlib.py
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
|  
* commit d36f21036b874d526e41ad715cd5a77563b31af5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 12:57:21 2007 +0000
| 
|     add consensus test script & example
| 
| A	matlab/examples/test_wds_consensus.m
| M	matlab/examples/wds_consensus.m
|  
* commit edb911566533251ff77db1a3f77e80d06f8adc9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 12:42:47 2007 +0000
| 
|     fix crashes when calling obtain_by_sliding_window
|     or obtain_from_position_list - TWICE
| 
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit a6268084802aef1a481e95f1de9eacc7e7f8e590
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Apr 20 08:55:37 2007 +0000
| 
|     get_WD_consensus is finally working correctly.
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 1648019b3850a30a728836ae8115c05078a6c599
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Apr 17 19:18:59 2007 +0000
| 
|     b0rken: backtracking needs to go over full tree (max. all 4^d strings)
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit 19a305624685b7a81d92f29ac0b3bdd1ebdbea63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 18:47:27 2007 +0000
| 
|     consensus debug example
| 
| M	matlab/examples/wds_consensus.m
|  
* commit a8933a345d3270b1f6587f22dd49a2eebf51fe19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 18:46:47 2007 +0000
| 
|     display matrix column major + further consensus work
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 28d5ecc36e4123a9afbb943fee40e8b130ec4057
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 16 10:38:49 2007 +0000
| 
|     +fix string/char features, kernels before based on charfeatures should work
|     again in matlab
|     +add code + example for consensus computation for WDS kernel
| 
| A	matlab/examples/wds_consensus.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit db3de68fb29adafdd8b72c76e4e0f5a1cc304fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 15 17:02:02 2007 +0000
| 
| M	matlab/examples/string_features.m
|  
* commit 459795057f87b8400f11d42479e22c2be6a40385
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Apr 15 16:58:47 2007 +0000
| 
|     -fix from_position_list for TEST data (strlen(TEST) == 4 !!!)
|     -start impl. of consensus
|     -whitespace cleanups
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 72becea7dab272542e944aab5b83404e8c680ff5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 12 13:53:04 2007 +0000
| 
|     -add multiclass svm wrapper
|     -add L2-b-svm multiclass matlab example
|     -vojtechs multiclass svm is now working
| 
| A	matlab/examples/svm_multiclass.m
| M	src/classifier/svm/GMNPSVM.cpp
| M	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/MultiClassSVM.cpp
| A	src/classifier/svm/MultiClassSVM.h
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/gmnplib.cpp
| M	src/classifier/svm/gmnplib.h
| M	src/guilib/GUIPython.cpp
|  
* commit 7f19df189128eb39985651a7faf8f0297ea72e23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Apr 5 09:26:32 2007 +0000
| 
|     + add vojtech's multiclass bsvm
| 
| A	src/classifier/svm/GMNPSVM.cpp
| A	src/classifier/svm/GMNPSVM.h
| A	src/classifier/svm/GMNPSVM.i
| A	src/classifier/svm/gmnplib.cpp
| A	src/classifier/svm/gmnplib.h
| M	src/classifier/svm/gnpplib.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/guilib/GUISVM.cpp
| M	src/lib/common.h
|  
* commit 1ba061d4463d213bef7c31c7d94ecadb579ffff4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 14:34:55 2007 +0000
| 
|     wds-kernel encluded
| 
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python-modular/testcases/mfiles/WeightedDegreeCharKernel_True_DNA_20_True_3.m
| A	python-modular/testcases/mfiles/WeightedDegreePositionStringKernel_DNA_60_20.m
| M	python-modular/testcases/test_kernels.py
|  
* commit 292ebe788e312e5b9567ffe72fe8dd3325da138a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 12:54:55 2007 +0000
| 
| M	src/guilib/GUIPython.cpp
|  
* commit d91e86ad339cc460962ccafca372c6465476f119
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 08:28:59 2007 +0000
| 
|     solved transpose-problem of old python interface
| 
| M	src/guilib/GUIPython.cpp
|  
* commit c8021ee978e60bd6d72236bf31cdc27c71ad8848
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Apr 4 07:48:38 2007 +0000
| 
|     Enable tests for Python interface
| 
| A	python/testcases/m_print.py
| A	python/testcases/read_mfile.py
| A	python/testcases/run.sh
| A	python/testcases/test.py
| A	python/testcases/test_kernels.py
| A	python/testcases/test_python
|  
* commit e01dc3facfac4a2f53788de202f25fb43d5ce403
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Apr 2 12:08:22 2007 +0000
| 
|     R/python/octave interface compile fixes + trivial warning in LIK
| 
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit bef2e1ecf8ae85e331bb673b2f353cc98d4ef363
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:45 2007 +0000
| 
|     CSimpleLocalityImprovedStringKernel: simplify init()
|     
|     This trivial patch gets rid of an identation by immediately returning
|     false in case result==false.
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
|  
* commit 7cdac91e9120c12b8e0d96272cef26ff6a895036
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:44 2007 +0000
| 
|     CSimpleLocalityImprovedStringKernel: change type of size parameter from LONG to INT
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit 8d9d1390e9826ccd122d62d1fb152e72a2a4aa9f
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:44 2007 +0000
| 
|     SimpleLocalityImprovedStringKernel: trivial whitespace cleanups
| 
| M	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| M	src/kernel/SimpleLocalityImprovedStringKernel.h
|  
* commit fd3ddda21d7ac580c3a6f87b2c90547047f459b3
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:43 2007 +0000
| 
|     SimpleLocalityImprovedCharKernel -> SimpleLocalityImprovedStringKernel conversion
|     
|     This gets rid of the last remaining char kernel.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| D	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| D	src/kernel/SimpleLocalityImprovedCharKernel.h
| D	src/kernel/SimpleLocalityImprovedCharKernel.i
| A	src/kernel/SimpleLocalityImprovedStringKernel.cpp
| A	src/kernel/SimpleLocalityImprovedStringKernel.h
| A	src/kernel/SimpleLocalityImprovedStringKernel.i
|  
* commit 87f7bd059d62ad03bc03402103489e20a4c07408
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:43 2007 +0000
| 
|     make the matlab interface work again
|     
|     In the beginning was the plan, and then the specification;
|     And the plan was without form, and the specification was void.
|     
|     [...]
|     
|     And the President looked upon the product, and saw that it was very good.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit a824911a585f7b3973f007b96087f269d1249fb8
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:42 2007 +0000
| 
|     remove WeightedDegreeCharKernel and WeightedDegreePositionCharKernel
|     
|     These have been replaced by the corresponding string kernel.
| 
| M	src/kernel/Kernel.i
| D	src/kernel/WeightedDegreeCharKernel.cpp
| D	src/kernel/WeightedDegreeCharKernel.h
| D	src/kernel/WeightedDegreeCharKernel.i
| D	src/kernel/WeightedDegreePositionCharKernel.cpp
| D	src/kernel/WeightedDegreePositionCharKernel.h
| D	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 5a5772b3fcb352e9a07f335e72d3bddd7d30ebca
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: simplify compute_optimized()
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit 3c1b42c2517af2ca99b85e76044817a37d988064
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: Use clear_normal() to initialize the normal vector.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit b39b3b3da11b624c28d185c7a1f28f9d87746d98
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:41 2007 +0000
| 
|     LinearStringKernel: Kill result variable
|     
|     Also, add a comment to don't open code the dot product but to use
|     the corresponding function from Mathematics.h once this works with
|     templates.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit b02d66f1f6852ba2b64e7b7a7522b7d110eb7282
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:38 2007 +0000
| 
|     LinearStringKernel: Simplify clear_normal()
|     
|     Just use memset() to zero-out the array.
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit 6f8a2ff9ba0017276351026e9ae48884b133b931
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:38 2007 +0000
| 
|     LinearStringKernel: Kill pointless cast
| 
| M	src/kernel/LinearStringKernel.cpp
|  
* commit d1c05eaa2a0f474c5a103cd5e2fbf6c13482c996
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     CLinearStringKernel: Change type of size parameter from LONG to INT
| 
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
|  
* commit e532d93679629b9eb0d3f14afbd390517b2369a5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     LinearStringKernel: Trivial whitespace cleanups
| 
| M	src/kernel/LinearStringKernel.cpp
| M	src/kernel/LinearStringKernel.h
|  
* commit f6160a9515708a5cddb50c7b68646a8ec44bf4d3
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:37 2007 +0000
| 
|     rename LinearCharKernel to LinearStringKernel
|     
|     and make it compile again.
| 
| M	src/kernel/Kernel.i
| D	src/kernel/LinearCharKernel.cpp
| D	src/kernel/LinearCharKernel.h
| D	src/kernel/LinearCharKernel.i
| A	src/kernel/LinearStringKernel.cpp
| A	src/kernel/LinearStringKernel.h
| A	src/kernel/LinearStringKernel.i
|  
* commit 36dad3c0d0215e755dabe797ccdc26e9343d779d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:36 2007 +0000
| 
|     Remove WeightedDegreeCharKernelPolyA and WeightedDegreePositionPhylCharKernel
|     
|     They are unused according to Soeren, so changing them to become a
|     String kernel is a waste of time.
|     
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.cpp
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.h
|     deleted:    trunk/src/kernel/WeightedDegreeCharKernelPolyA.i
|     deleted:    trunk/src/kernel/WeightedDegreePositionPhylCharKernel.cpp
|     deleted:    trunk/src/kernel/WeightedDegreePositionPhylCharKernel.h
| 
| D	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| D	src/kernel/WeightedDegreeCharKernelPolyA.h
| D	src/kernel/WeightedDegreeCharKernelPolyA.i
| D	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| D	src/kernel/WeightedDegreePositionPhylCharKernel.h
|  
* commit 2ce107af9684def025b25986e2ac336b0b243152
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel.i: Fix missing char->string replacement
| 
| M	src/kernel/PolyMatchStringKernel.i
|  
* commit 82f4f00c89bf33091a0f925a2a0d56ff79aeb2eb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel: Simplify compute()
|     
|     Also, change the "size" parameter of the contructor from LONG to INT
| 
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
|  
* commit b614ce43c3c68a770a4d6dc304c6f3ef00fcd058
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:35 2007 +0000
| 
|     PolyMatchStringKernel: use init_sqrt_diag()
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit 974e0be0637e06992f7f27e2cd2df6dfc2598402
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:34 2007 +0000
| 
|     PolyMatchStringKernel: Kill pointless initializations with 1
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit f5539d9459b54eb6ae65a3fb9bf47d6186fad961
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:34 2007 +0000
| 
|     move init_sqrt_diag() from CFixedDegreeStringKernel to CKernel
|     
|     It is needed for other kernels as well, so this will aid in
|     removing duplicated code.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
|  
* commit a83b4d4c72b26b0689cd0707e8b7c2d0f3f9e70d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:33 2007 +0000
| 
|     char -> string conversion for kernel/Kernel.i
| 
| M	src/kernel/Kernel.i
|  
* commit f25b4af34e5b4c923563fa56657420a01cd4e6ea
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:33 2007 +0000
| 
|     PolyMatchStringKernel: more trivial whitespace cleanups
| 
| M	src/kernel/PolyMatchStringKernel.cpp
|  
* commit 6e76a9cde837e0895ee60a18a87be54ef9d050e5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:32 2007 +0000
| 
|     PolyMatchStringKernel: Trivial whitespace cleanup
| 
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
|  
* commit ebfd7bd87ec344f27a0a9e8d04820b494bcd4d55
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:32 2007 +0000
| 
|     PolyMatchStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/PolyMatchStringKernel.cpp
| M	src/kernel/PolyMatchStringKernel.h
| M	src/kernel/PolyMatchStringKernel.i
|  
* commit faa1815fbd74df887e19363b098e4d87b8979d6e
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:31 2007 +0000
| 
|     rename PolyMatchCharKernel to PolyMatchStringKernel
|     
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.cpp -> trunk/src/kernel/PolyMatchStringKernel.cpp
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.h -> trunk/src/kernel/PolyMatchStringKernel.h
|     renamed:    trunk/src/kernel/PolyMatchCharKernel.i -> trunk/src/kernel/PolyMatchStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/PolyMatchCharKernel.cpp
| D	src/kernel/PolyMatchCharKernel.h
| D	src/kernel/PolyMatchCharKernel.i
| A	src/kernel/PolyMatchStringKernel.cpp
| A	src/kernel/PolyMatchStringKernel.h
| A	src/kernel/PolyMatchStringKernel.i
|  
* commit d33e9333fa0b4f19be4329f0ccf5b5623f5e0880
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:30 2007 +0000
| 
|     FixedDegreeStringKernel: Introduce init_sqrt_diag()
|     
|     This private method computes the vector containing the square root
|     of the diagonal elements of the kernel. This computation is needed
|     twice in the current code, so it makes sense to move that code into
|     its own helper function.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
|  
* commit b1f62cf8be7bff37c9ea2de85e1c97c74ce5277f
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:30 2007 +0000
| 
|     FixedDegreeStringKernel: Kill pointless initialization
|     
|     The entries of sqrtdiag_lhs and sqrtdiag_rhs are all set to one, only
|     to reset them to their proper value a few lines later (without using
|     them in between of course). So kill that pointless initialization.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 33ec791d0990c90498cf65ca84d23c9c6c7d62c5
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:29 2007 +0000
| 
|     FixedDegreeStringKernel: Fix ASSERT() placement
|     
|     It's pointless to check for memory allocation failure _after_ using
|     the return value of new.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 4a1a197a62cf4545c6031abe689246b2b79d9798
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:29 2007 +0000
| 
|     FixedDegreeStringKernel: Kill pointless NULL assignment
|     
|     A new value is assigned to sqrtdiag_lhs one line below.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 65d235087531380dfaf7a9660f1ba4c4770d58bb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Use DREAL instead of double
|     
|     We're returning DREAL, so this makes more sense.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 5dd8c560a4a1c4e833c756dcc675f07c700ba61a
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Simplify compute()
|     
|     Only the product of the squareroots of lhs and rhs
|     is used, so compute it in one go.
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
|  
* commit 61ea88346b16ba17ba45a67fe1e68fdbf1f474d6
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:28 2007 +0000
| 
|     FixedDegreeStringKernel: Trivial whitespace fixes
| 
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
|  
* commit b1283113b3cde7586e5173a4dc1e89eef2f385bf
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:27 2007 +0000
| 
|     FixedDegreeStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.cpp
| M	src/kernel/FixedDegreeStringKernel.h
| M	src/kernel/FixedDegreeStringKernel.i
|  
* commit 58386a2039d05d7fcd5a89b4151c9b811db4c5ad
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:27 2007 +0000
| 
|     Rename FixedDegreeCharKernel to FixedDegreeStringKernel
|     
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.cpp -> trunk/src/kernel/FixedDegreeStringKernel.cpp
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.h -> trunk/src/kernel/FixedDegreeStringKernel.h
|     renamed:    trunk/src/kernel/FixedDegreeCharKernel.i -> trunk/src/kernel/FixedDegreeStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/FixedDegreeCharKernel.cpp
| D	src/kernel/FixedDegreeCharKernel.h
| D	src/kernel/FixedDegreeCharKernel.i
| A	src/kernel/FixedDegreeStringKernel.cpp
| A	src/kernel/FixedDegreeStringKernel.h
| A	src/kernel/FixedDegreeStringKernel.i
|  
* commit 865ac6603ee728aa50b2c88ba0c6e4b59db00f7e
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:26 2007 +0000
| 
|     LocalityImprovedStringKernel: Kill another instance of open coded pow()
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 13556f7b1ecf7d80c35c199c5ebe77ab698fe94b
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: Final whitespace cleanups
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 4e090e534000eedee09217e5d937c46bf4f31c5d
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: Don't open code the pow() function.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit b260ee45ab20b1f79bcda0e4e46932be60b4eb5b
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:25 2007 +0000
| 
|     LocalityImprovedStringKernel: More trivial whitespace cleanups
|     
|     Replace spaces by tabs and add additional spaces according to Coding style.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit b2f8409904fc7f4b257ba2422257ae82dc164f6c
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:24 2007 +0000
| 
|     LocalityImprovedStringKernel: Simplify for loop
|     
|     One line of code is obviously equivalent to the six lines we've had before.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 3cda91f53966a61c0c07008afc7a4df83eb672b1
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:24 2007 +0000
| 
|     LocalityImprovedStringKernel: Trivial whitespace cleanup
|     
|     Only replace leading spaces by tabs.
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 810251c5447f3c8a7f3ef903d09ac41520af8a34
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:23 2007 +0000
| 
|     LocalityImprovedStringKernel: minor cleanup in init()
| 
| M	src/kernel/LocalityImprovedStringKernel.cpp
|  
* commit 99d104e0b46acff55437deae2753a692ba2cc1d4
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:23 2007 +0000
| 
|     LocalityImprovedStringKernel: replace char features by string features
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.cpp
| M	src/kernel/LocalityImprovedStringKernel.h
| M	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 8b595103594775a4ea4b92e1d8ffe922d948d59c
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Mon Apr 2 08:27:21 2007 +0000
| 
|     rename LocalityImprovedCharKernel to LocalityImprovedStringKernel
|     
|     The change to GUIKernel.cpp was neccessary to make it compile again.
|     
|     modified:   trunk/src/guilib/GUIKernel.cpp
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.cpp -> trunk/src/kernel/LocalityImprovedStringKernel.cpp
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.h -> trunk/src/kernel/LocalityImprovedStringKernel.h
|     renamed:    trunk/src/kernel/LocalityImprovedCharKernel.i -> trunk/src/kernel/LocalityImprovedStringKernel.i
| 
| M	src/guilib/GUIKernel.cpp
| D	src/kernel/LocalityImprovedCharKernel.cpp
| D	src/kernel/LocalityImprovedCharKernel.h
| D	src/kernel/LocalityImprovedCharKernel.i
| A	src/kernel/LocalityImprovedStringKernel.cpp
| A	src/kernel/LocalityImprovedStringKernel.h
| A	src/kernel/LocalityImprovedStringKernel.i
|  
* commit 00eaf6e97e35eea2314f20c1c9394cd6fc7ffdc7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 31 12:59:37 2007 +0000
| 
|     readd the undefined suppress to the configure options
|     whether the rest works only time will tell :-)
| 
| M	src/configure
|  
* commit cfc9c19e11366b8bcb282df0680056d31465c592
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Mar 25 17:52:24 2007 +0000
| 
|     fixed some problems on intel macs... soeren, please check it.
|     G
| 
| M	src/Makefile
|  
* commit 47bd88eb03f2f72c2b6c9847de1dc04dfeecb71b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Mar 22 06:36:52 2007 +0000
| 
|     fixed some configure issues on imacs. seems to work.
| 
| M	src/configure
|  
* commit f154c4e4126cac0e959ecb584a444ef9f3d1c7af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 13:20:24 2007 +0000
| 
|     test script
| 
| M	matlab/examples/string_features.m
|  
* commit 3b4ef34d8f29221ec471f328f3b642ece880c0fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 13:20:12 2007 +0000
| 
|     WD kernel string support
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit b8c46439ff97f2ef4f26d117c29873f69f971098
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Wed Mar 14 11:54:27 2007 +0000
| 
|     Trie.h: Simplify check_treemem()
|     
|     and reduce line length and white space usage according
|     to the shogun coding style.
| 
| M	src/lib/Trie.h
|  
* commit 97f49106921fe2c375507468dfd9081fac233556
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Wed Mar 14 11:54:27 2007 +0000
| 
|     Trie.h: Trivial whitespace cleanups
| 
| M	src/lib/Trie.h
|  
* commit 9fcd1f7d2934cdaf9aa01bdfc73a2828bec5b0ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:50:06 2007 +0000
| 
|     matlab example on how to use sliding window
| 
| A	matlab/examples/string_features.m
|  
* commit 8dd92a40a3aeae5b294e89fff0103f63550523e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:37:50 2007 +0000
| 
|     matlab interface compile fix
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
|  
* commit 8798bec92bea89684891967dba4c18a995658d2d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:25:27 2007 +0000
| 
|     octave example for sliding window
| 
| A	octave/examples/stringfeatures.m
|  
* commit 445581378feb96d9a8abe39f6b1f681ee6b1c5d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 14 09:20:19 2007 +0000
| 
|     obtain by sliding window / by position list
| 
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/gui/Matlab.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreeStringKernel.cpp
| A	src/kernel/WeightedDegreeStringKernel.h
| A	src/kernel/WeightedDegreeStringKernel.i
| M	src/lib/common.h
|  
* commit 48fb6ab111497ce5cd937793b38bc96a56cd3fad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 13 09:25:50 2007 +0000
| 
|     by default use linadd
| 
| M	src/guilib/GUISVM.cpp
|  
* commit 8cf98ffc4bc4ca9516470af31736a1bcd94e4115
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 19:21:50 2007 +0000
| 
|     also add missing init to wds -string kernel
| 
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
|  
* commit 1ad3815880b4ce94cef4d4cb997ce22baf698ae4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 16:50:57 2007 +0000
| 
|     fix WDS (missing NULL init of shifts)
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit c5463478c27f4a890257874363e2d7121daf5578
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 11:46:13 2007 +0000
| 
|     snapshot for non DEBIAN
| 
| M	Makefile
|  
* commit cdd53dddd6d38954dba20fe8b52999795bca5ff7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Mar 12 11:42:59 2007 +0000
| 
|     * merge changes from 0.3.2
|     * add sliding window stringfeatures example
|     * allow features to be None for WDS kernel
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python-modular/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit f757ed31cbb1a26d471a0b8255b223a983505396
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 11 09:31:42 2007 +0000
| 
|     svm lin example
| 
| A	python-modular/examples/numpy_svmlin_matplotlib.py
|  
* commit 6097743c494a2260325b59ace5421b118f9b294b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 16:49:32 2007 +0000
| 
|     filter swig array Overloaded warnings
| 
| M	src/lib/Array.i
| M	src/lib/Array2.i
| M	src/lib/Array3.i
|  
* commit ae0240454b0f682e39b499ea2ec5c0396ff4ec0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 14:55:42 2007 +0000
| 
|     add locality improved kernel example
| 
| A	octave/examples/lik_kernel.m
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
|  
* commit a8eee00ec06c42f7deb89f287bd817b252b04564
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 09:17:56 2007 +0000
| 
|     * allow the alphabet type in the Stringfeatures constructor
|     * add support for wds CHAR kernel / update example
|     
|     important issue valid for all kernels:
|     	in init(lhs, rhs), the first call should be SuperClass::init(lhs,rhs);
|     	as this will check for NULL ptr, valid feature class & type
|     
|     this was broken for the WD* kernels and lead to hard to track erros.
| 
| M	python-modular/examples/wds_kernel.py
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.i
| M	src/features/StringFeatures.h
| M	src/kernel/DistanceKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
|  
* commit 2c80bbe633c1826b7ac013395ff76fd0820d5512
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 9 08:00:41 2007 +0000
| 
|     wds STRING kernel now works from inside of python.
|     
|     although it means code duplication, I will merge changes to the wds CHAR kernel
| 
| M	python-modular/examples/wds_kernel.py
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 59012984dd0fbe07709a5d7ab99cfface0df8ea6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 16:05:22 2007 +0000
| 
|     introduce lib/matlab.h which encapsulates
|     the compatibilty define (as we already have
|     		for python)
|     
|     note that the plif & best_path_trans functions
|     spit out quite some warnings...breakage to be expected
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/io.cpp
| A	src/lib/matlab.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 4a5a70bce5c85cbbebe897c220e51de04e4725cf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 15:55:19 2007 +0000
| 
|     matlab 7.4 compile/compatibility fix
| 
| M	src/guilib/GUIMatlab.h
|  
* commit 3d4a599d711596f81c4e8f06953bae7de0faf814
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 8 15:08:40 2007 +0000
| 
|     include markov chain example and add missing features/kernels to
|     the python interface (though I really only wanted to interface
|     		the WDS kernel ...)
| 
| A	octave/examples/markov_chain.m
| M	src/Makefile
| M	src/base/SGObject.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/FKFeatures.i
| M	src/features/Features.i
| M	src/features/RealFileFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.h
| M	src/features/TOPFeatures.i
| M	src/features/WordFeatures.cpp
| M	src/kernel/CommWordKernel.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.i
| M	src/kernel/DistanceKernel.i
| M	src/kernel/FixedDegreeCharKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearCharKernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearWordKernel.i
| M	src/kernel/LocalityImprovedCharKernel.i
| M	src/kernel/PolyKernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SalzbergWordKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.i
| M	src/kernel/SparseNormSquaredKernel.i
| M	src/kernel/SparsePolyKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.i
| M	src/kernel/WordMatchKernel.i
| M	src/lib/io.i
|  
* commit e31b5a292fb5f5318b723dc7d54adf921e846907
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 7 22:04:36 2007 +0000
| 
|     remove debug output
| 
| M	src/kernel/GaussianKernel.cpp
|  
* commit 65fc203bb238cc641d79f0ff5aa328d12d038e10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Mar 7 18:19:02 2007 +0000
| 
|     * update to 0.3.2
|     * start wds kernel python interf.
| 
| M	python-modular/examples/wds_kernel.py
| M	src/ChangeLog
| M	src/TODO
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.i
|  
* commit 88e698e6e036dd51fd6e90ad66e1b6986485d725
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Mar 7 09:38:29 2007 +0000
| 
|     generalize for char values
| 
| M	python-modular/test_case_generator/generate_testcases.py
| M	python-modular/test_case_generator/m_print.py
|  
* commit a0ab2ae6fddcad88755ed2b12b0b035fd8ec76ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 6 15:26:12 2007 +0000
| 
|     merge changes back to trunk
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/base/Version.h
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/Octave.cpp
|  
* commit 54a857afa4036d50759c1c7bef58a6465071d5df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Mar 6 15:00:26 2007 +0000
| 
|     release shogun 0.3.2 fixing a number of bugs in the examples
|     and several valgrind hits in octave/hmm adding support for
|     numpy boolean -> for msplicer v0.2
| 
| M	src/NEWS
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/structure/DynProg.i
|  
* commit ce375764eaf16eeb2ee1fbcec616241041999419
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Mar 5 08:32:31 2007 +0000
| 
|     fixed version string.
|     G
| 
| M	src/base/Version.h
|  
* commit 751712caed9923e36065c866a382548a63488521
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Mar 4 21:05:02 2007 +0000
| 
|     * much more detailed error outputs when types/dims don't match
|     * workaround a numpy issue when long == int (long and int are different
|     		types inside of numpy, but both are 32bit on 32bit machines)
|     	if they are 32bit and same size then treat long as int
| 
| M	src/lib/python_typemaps.i
|  
* commit bc418e061e37fc6ddb0a6d79b70335048898b5ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 3 17:53:25 2007 +0000
| 
|     make obj->ref() / obj->unref() a macro
|     	SG_REF(obj)
|     	SG_UNREF(obj)
|     which is empty for the static interfaces
| 
| M	src/README.developer
| M	src/base/SGObject.h
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/features/CombinedFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
|  
* commit b94bcb02728a6c83771d91d29c8413ee10af6b32
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Mar 3 09:53:58 2007 +0000
| 
|     as we now unref() objects on destruction we have to
|     make sure no one else killed the object before we unref() it
|     this however may happen in all the static guis (matlab,...) so
|     all interfaces except the python-modular one are broken if commands
|     like clean_features/clean_kernels are called in wrong order
|     
|     this fixes just enough to make the test_wd_kernel script run
| 
| M	src/base/SGObject.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 02964714b49d09f031410a16881c0b684a1e43eb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Mar 2 19:44:20 2007 +0000
| 
|     this adds support for string featuers in python as follows:
|     
|     >>> from shogun.Features import *
|     >>> x=StringCharFeatures(Alphabet(DNA))
|     >>> x.set_string_features(['blafoo','hallo','dummdidumm'])
|     >>> x.select_feature_vector(1)
|     >>> x.get_str()
|     array(['h', 'a', 'l', 'l', 'o'],
|     			  dtype='|S1')
|     
|     there is a certain overhaul in the WD* kernels necessary -
|     as the shift kernel is not yet really supported (and we are losing
|     		control if we go on duplicating the code like this...)
| 
| M	matlab/examples/test_wd_kernel.m
| M	python-modular/examples/stringfeatures.py
| A	python-modular/examples/wds_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/python_typemaps.i
|  
* commit f8ce89344ae54889d707556ae9cf68510f35e597
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Mar 2 11:13:01 2007 +0000
| 
|     cleaned up a bit. still works.
| 
| M	src/structure/DynProg.cpp
|  
* commit dfeff851f0452cd2a97b796e7a9e96517e19696a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Mar 2 11:05:04 2007 +0000
| 
|     Mainly debug changes... cleanup soon.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit f1157d3f2911f2109f8a9d24c3de5efe4bb1f3b7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 10:38:43 2007 +0000
| 
|     get rid of unused function definitions causing compile
|     problems
| 
| M	src/ChangeLog
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionStringKernel.cpp
| M	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/python_typemaps.i
|  
* commit 5adae808764ba0a1736721386a8420950c28fd03
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 09:34:27 2007 +0000
| 
|     add missing files and include WDS kernel in Kernel.i
| 
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| A	src/kernel/WeightedDegreePositionStringKernel.i
| A	src/lib/python.h
|  
* commit 8acdc70b61349c39dba472db126a36ca82a6d161
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Mar 1 09:32:27 2007 +0000
| 
|     * this adds a obtain_by_sliding_window function to StringFeatures
|     * for that to work we need the WD kernel to work on string features
|     which is what WeightedDegreePositionStringKernel introduces. as this is
|     yet another code duplication we should get rid of (or creat a generic
|     		WD kernel object every WD kernel derives from).
|     * numpy.i is renamed to python_typemaps.i (as we need lists of
|     		strings to be mapped to string features - not exactly a numeric
|     		problem)
| 
| M	src/ChangeLog
| M	src/classifier/LinearClassifier.i
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVM.i
| M	src/distance/Distance.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.i
| M	src/guilib/GUIPython.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| A	src/kernel/WeightedDegreePositionStringKernel.cpp
| A	src/kernel/WeightedDegreePositionStringKernel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| D	src/lib/numpy.i
| A	src/lib/python_typemaps.i
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/Structure.i
|  
* commit 98c24755931d33f8d92c413a5e5de0e7be1c4adf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 23:43:07 2007 +0000
| 
|     replace $self -> self as this seems to be troublesome on
|     older swig versions
| 
| M	src/features/StringFeatures.i
|  
* commit 31baed4a1163d2c0aefba6eaf51bc6eca514d62e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Feb 27 23:31:41 2007 +0000
| 
|     fixed another wrong free...
| 
| M	src/lib/Array.h
|  
* commit 3f7ece4989180611f8ab78cf550db85a4e3882fa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 23:26:47 2007 +0000
| 
|     workaround some broken swig oddities (which were working using
|     swig 1.3.2x): swig does not apply typemaps to templated classes
|     anymore... use %extend and define wrapper functions to call
|     the real functions...
| 
| M	python-modular/examples/stringfeatures.py
| M	src/ChangeLog
| M	src/features/Features.i
| M	src/features/ShortFeatures.h
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/features/WordFeatures.h
| M	src/features/WordFeatures.i
|  
* commit b541b5d22899511d2194f840f647ef7a08c7c226
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Feb 27 22:00:44 2007 +0000
| 
| M	src/lib/numpy.i
| M	src/structure/DynProg.i
|  
* commit 47f513f4c2cc552e744a6e086dd506b46bf2c516
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 27 20:52:07 2007 +0000
| 
|     * this fixes the many pointer related warnings
|     * also fixes configure for atlas/lapack
| 
| M	src/ChangeLog
| M	src/base/SGObject.h
| M	src/configure
|  
* commit 747f9223f793c2761d2f8f6d1b223b00c9fd2a24
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 26 16:21:57 2007 +0000
| 
| A	python-modular/testcases/test_references.py
|  
* commit f1c0d934cd353f65b74928dbb267d9d3734ead7e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 26 09:47:26 2007 +0000
| 
|     * introduced reference counted objects for automagic swig object deallocation
|     * fixed a crasher bug in Array destructor
|     * updated developer readme
|     * added python signal handling: ctrl+c now raises a keyboard exception if not
|     in a big loop. in big loops it asks whether to immediately stop/prematurely stop
|     * fix crasher bugs (array out of bounds read/write) in translate_from_single_order
|     
|     using the reference counts from above we may now think of taking references
|     to numpy objects instead of copying them :-)
| 
| M	src/README.developer
| M	src/base/Parallel.cpp
| M	src/base/Parallel.h
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/Classifier.i
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/distance/Distance.cpp
| M	src/distributions/Distribution.cpp
| M	src/features/Alphabet.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/Features.cpp
| M	src/features/Labels.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUITime.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Trie.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/preproc/PreProc.cpp
| M	src/structure/DynProg.cpp
|  
* commit e0097b56c03bc598de64a4e475277fd469f645ed
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Fri Feb 23 10:12:17 2007 +0000
| 
|     io.cpp: trivial whitespace cleanup
| 
| M	src/lib/io.cpp
|  
* commit b6a84e843079e5817e7e2c55dcd529b5bff743cb
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Thu Feb 22 18:18:10 2007 +0000
| 
|     add myself to authors
| 
| M	src/.authors
|  
* commit f1cb6757d5fa20ab25434889defd26b5f717cf72
| Author: Andre Noll <Andre.Noll@tuebingen.mpg.de>
| Date:   Thu Feb 22 18:17:43 2007 +0000
| 
|     further Array.h cleanups
|     
|     - remove unneccessary template
|     - simplify resize_array()
|     - reduce line width
|     - get rid of some duplicate SG_PRINT()s
|     - add myself to authors
| 
| M	src/lib/Array.h
|  
* commit 720ff7c1284bbfe945032276a2cc479d3bd5c053
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 17:45:35 2007 +0000
| 
|     * added jonas to authors
|     * added andre's array cleanup patches - now it is readable again!!
|     
|     	- The whole file was indented by one tab. Why?
|     	- This patch replaces the #ifdef ARRAY_STATISTICS mess we've had before
|     	by a set of macros which expand to nothing if ARRAY_STATISTICS is
|     	not defined.
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/lib/Array.h
|  
* commit 57ab6be31e6d009fd08e7b31fb91b0eff3d4fbda
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 17:03:33 2007 +0000
| 
|     svn cp matlab testcases to octave
| 
| A	octave/testcases/run.sh
| A	octave/testcases/test_chi2_kernel.m
| A	octave/testcases/test_gaussian_kernel.m
| A	octave/testcases/test_kernels.m
| A	octave/testcases/test_linear_kernel.m
| A	octave/testcases/test_octave.m
| A	octave/testcases/test_poly_kernel.m
| A	octave/testcases/test_sigmoid_kernel.m
| A	octave/testcases/test_wdchar_kernel.m
|  
* commit 44eef9b2be70b935d3cff6a02492fe00e0db3592
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 16:39:49 2007 +0000
| 
|     +impl. bias in svmlin
| 
| M	python-modular/examples/svm_lin.py
| M	src/ChangeLog
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
|  
* commit 4344f6492fdbf0f0728a6813ddd7399ea997ac45
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 16:21:31 2007 +0000
| 
|     fixed bug
| 
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_wdchar_kernel.m
|  
* commit 6be21f01384541995f1a87ddd45ae7fd40edaea8
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 16:15:23 2007 +0000
| 
|     add wdcharkernel
| 
| M	matlab/testcases/test_kernels.m
| M	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_wdchar_kernel.m
|  
* commit bc35b8209b1a835893da37845e6f270e408ab42f
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 15:17:52 2007 +0000
| 
|     add test for char kernels
| 
| D	python-modular/testcases/m_print.py
| M	python-modular/testcases/mfiles/Chi2Kernel_10.m
| M	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| M	python-modular/testcases/mfiles/LinearKernel_False.m
| M	python-modular/testcases/mfiles/LinearKernel_True.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python-modular/testcases/mfiles/WeightedDegreeCharKernel_True_DNA_20_True_3.m
| A	python-modular/testcases/read_mfile.py
| A	python-modular/testcases/run.sh
| M	python-modular/testcases/test.py
| M	python-modular/testcases/test_kernels.py
| D	python-modular/testcases/test_python
|  
* commit f8eb3db29073a98de648aa1cea944fbe45ce5106
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 22 10:11:59 2007 +0000
| 
|     make SVMLin work in practice (works only w/o bias sofa)
| 
| M	src/classifier/SparseLinearClassifier.cpp
| M	src/classifier/SparseLinearClassifier.h
| M	src/classifier/SparseLinearClassifier.i
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
|  
* commit 1b3bb6504ba3145bd4d3fa0905d68b1bd5dca25a
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:46:07 2007 +0000
| 
|     add octave test script
| 
| A	matlab/testcases/run.sh
| A	matlab/testcases/test_octave.m
|  
* commit cf9d7e5a886d01a6e47b408b34678bcbdc011999
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:44:55 2007 +0000
| 
|     add octave test script
| 
| M	matlab/testcases/test_kernels.m
| D	matlab/testcases/test_matlab.m
|  
* commit 1449cc58d35baf3c276311d48064034b623c4d0b
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Thu Feb 22 09:37:06 2007 +0000
| 
|     * removed CharPolyKernel
|     * add make test
| 
| M	src/Makefile
| M	src/guilib/GUIKernel.cpp
|  
* commit 460c6e2940baa0c71b16f7d97d0dcfdcdf4055d3
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 14:09:07 2007 +0000
| 
|     print before exec#ing test
| 
| M	python-modular/testcases/test_python
|  
* commit 4af263daa001b58dae4a9ba8224dfd09314c66e4
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:49:13 2007 +0000
| 
|     move generator to python-modular
| 
| A	python-modular/test_case_generator/generate_testcases.py
| A	python-modular/test_case_generator/m_print.py
| D	python/test_case_generator/generate_testcases.py
| D	python/test_case_generator/m_print.py
|  
* commit 4a11d90614031ac0158b8da2517c92b1b4b13a3d
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:47:45 2007 +0000
| 
|     move testcases to python-modular directory
| 
| A	python-modular/testcases/m_print.py
| A	python-modular/testcases/mfiles/Chi2Kernel_10.m
| A	python-modular/testcases/mfiles/GaussianKernel_10_13.m
| A	python-modular/testcases/mfiles/LinearKernel_False.m
| A	python-modular/testcases/mfiles/LinearKernel_True.m
| A	python-modular/testcases/mfiles/PolyKernel_False_10_False_3.m
| A	python-modular/testcases/mfiles/PolyKernel_False_10_True_3.m
| A	python-modular/testcases/mfiles/PolyKernel_True_10_False_3.m
| A	python-modular/testcases/mfiles/PolyKernel_True_10_True_3.m
| A	python-modular/testcases/mfiles/SigmoidKernel_05_10_07.m
| A	python-modular/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python-modular/testcases/test.py
| A	python-modular/testcases/test_kernels.py
| A	python-modular/testcases/test_python
| A	python/test_case_generator/m_print.py
| D	python/testcases/m_print.py
| D	python/testcases/mfiles/Chi2Kernel_10.m
| D	python/testcases/mfiles/GaussianKernel_10_13.m
| D	python/testcases/mfiles/LinearKernel_False.m
| D	python/testcases/mfiles/LinearKernel_True.m
| D	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| D	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| D	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| D	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| D	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| D	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	python/testcases/test.py
| D	python/testcases/test_kernels.py
| D	python/testcases/test_python
|  
* commit e6333dd4e28b2ca1ba2514aa1ad2df5a77c16c22
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 13:45:11 2007 +0000
| 
|     removed unused CharPolyKernel
|     updated test scripts
| 
| M	python/test_case_generator/generate_testcases.py
| M	python/testcases/mfiles/Chi2Kernel_10.m
| M	python/testcases/mfiles/GaussianKernel_10_13.m
| M	python/testcases/mfiles/LinearKernel_False.m
| M	python/testcases/mfiles/LinearKernel_True.m
| M	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| M	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| M	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| M	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| M	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| M	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| D	src/kernel/CharPolyKernel.cpp
| D	src/kernel/CharPolyKernel.h
| D	src/kernel/CharPolyKernel.i
|  
* commit 14fca607317287dcd2d2721c4054312e71ff7dae
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:58:01 2007 +0000
| 
| M	matlab/testcases/test_poly_kernel.m
|  
* commit 862b646c742a09b63ef104545a8f9647dfc33403
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:53:46 2007 +0000
| 
|     Test module for matlab interface. Testscript: test_matlab.m
| 
| A	matlab/testcases/test_chi2_kernel.m
| A	matlab/testcases/test_gaussian_kernel.m
| A	matlab/testcases/test_kernels.m
| A	matlab/testcases/test_linear_kernel.m
| A	matlab/testcases/test_matlab.m
| A	matlab/testcases/test_poly_kernel.m
| A	matlab/testcases/test_sigmoid_kernel.m
|  
* commit adc91326be38333a3e95c829582de59f4a3d8bc7
| Author: Jonas Behr <Jonas.Behr@tuebingen.mpg.de>
| Date:   Wed Feb 21 12:49:49 2007 +0000
| 
|     Testcase generator and test module for python swig interface. Testscript: test_python
| 
| A	python/test_case_generator/generate_testcases.py
| A	python/testcases/m_print.py
| A	python/testcases/mfiles/Chi2Kernel_10.m
| A	python/testcases/mfiles/GaussianKernel_10_13.m
| A	python/testcases/mfiles/LinearKernel_False.m
| A	python/testcases/mfiles/LinearKernel_True.m
| A	python/testcases/mfiles/PolyKernel_False_10_False_3.m
| A	python/testcases/mfiles/PolyKernel_False_10_True_3.m
| A	python/testcases/mfiles/PolyKernel_True_10_False_3.m
| A	python/testcases/mfiles/PolyKernel_True_10_True_3.m
| A	python/testcases/mfiles/SigmoidKernel_05_10_07.m
| A	python/testcases/mfiles/SigmoidKernel_11_10_13.m
| A	python/testcases/test.py
| A	python/testcases/test_kernels.py
| A	python/testcases/test_python
|  
* commit 8e8dfad3ff407b1ff6e59be0319deee38c70a331
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 21 10:54:15 2007 +0000
| 
|     * further cleanup patches from andre (Mathematics.h):
|     	- The code fails badly in case size==1.
|     	-Also, clean up the placement of spaces of that function according
|     	 to README.developers.
|     	 The code was broken for n<=0: For n==0 it would print only
|     	 "name=[", and it would segfault for n<0. Fix that up as well.
|     	 We're compiling with -O, so gcc will unroll the last iteration of
|     	 the loop, i.e. the new code should not be slower than the old code.
|     	- Kill four pointless loops and don't segfault for rows<=0 or cols<=0.
|     * remove broken KerthiPrimalSVM
|     * implement CSparseLinearClassifier
|     * derive CSVMLin from CSparseLinearClassifier
|     * add example on how to use SVMLin from python
|     * update AUTHORS, CONTRIBUTIONS
|     * make all the cache sizes in all the feature objects Constructors
|     	INT (as they are in MB anyway)
|     
|     Yes. We now have Sindhwani/Keerthis primal svm in shogun.
| 
| A	python-modular/examples/svm_lin.py
| M	src/CONTRIBUTIONS
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| A	src/classifier/SparseLinearClassifier.cpp
| A	src/classifier/SparseLinearClassifier.h
| A	src/classifier/SparseLinearClassifier.i
| D	src/classifier/svm/KerthiPrimalSVM.cpp
| D	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/classifier/svm/ssl.cpp
| M	src/classifier/svm/ssl.h
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.i
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.h
| M	src/lib/Mathematics.h
|  
* commit f5438ed28cdbb2cf458334befcda732ec2abe17e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 17:19:25 2007 +0000
| 
|     3.1 merging
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	src/configure
|  
* commit ce0639c056fcae420811962836e5a96add6a80d9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:54:51 2007 +0000
| 
|     releasing
| 
| M	src/ChangeLog
|  
* commit 555e91a208a19a9545774e688ac428585b16f8c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:48:55 2007 +0000
| 
|     build fix on osx
| 
| M	src/base/Parallel.h
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
|  
* commit 137f31df8d011da1b39817dd07246cb6c03f7a69
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 16:14:34 2007 +0000
| 
|     * number of processors autodetection for LINUX/DARWIN
|     removed that part from configure
| 
| M	src/ChangeLog
| M	src/base/Parallel.h
| M	src/configure
|  
* commit 92ef6f5f893793bb05b6e9ac509585eac31488cb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 15:49:14 2007 +0000
| 
|     bugfix release 0.3.1
| 
| M	src/NEWS
| M	src/configure
|  
* commit a511b837d4196ef2d184878a4ff9f216d5c5f536
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Tue Feb 20 10:36:46 2007 +0000
| 
| A	doc/pseudocode/poim.txt
|  
* commit 5f1c581cbc24bd74464e2c3981b26f8e055eaa10
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 00:47:34 2007 +0000
| 
|     define a binary search helper function as suggested by andre
| 
| M	src/ChangeLog
| M	src/lib/Mathematics.h
|  
* commit e7e42c2e850d58ffafdbacfcd5eedbf7710e0d0f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 20 00:21:58 2007 +0000
| 
|     (more of andre's cleanups)
|     
|     More or less a trivial cleanup that reduces lines of code quite a bit
|     while improving readability.
|     
|     The only nontrivial change is the skip of the register keyword for
|     the diff variable. Nowadays, register should not be used anymore as
|     it does more harm than good. We're using -O anyway.
| 
| M	src/lib/Mathematics.h
|  
* commit 0f664a9c9209f957b7c2b6799f5e45f0a6e595bd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 19 23:19:25 2007 +0000
| 
|     * fix configure check for sysconf _SC_NPROCESSORS_ONLN (should work now on macs)
|     * use cxx_check to test for powl()
|     * use random() in randperm()
| 
| M	src/base/Parallel.h
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 4392084a3bf7013e665377ed56804c5e4252e210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 19 09:46:11 2007 +0000
| 
|     * applied andre's cleanup patches
|     * some more SVMLin fixes
| 
| M	src/ChangeLog
| M	src/classifier/svm/SVMLin.cpp
| M	src/classifier/svm/SVMLin.h
| M	src/lib/Mathematics.h
|  
* commit 6cf5fd37f18321a35d2d36d056e7c0f56a6a75d2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 18 07:52:35 2007 +0000
| 
|     rework configure to put -D$OS also into DEFINES
| 
| M	src/configure
| M	src/lib/io.h
|  
* commit 0d01e7d57ced76b328eac7cb515dd22eca14ec90
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 17 22:16:29 2007 +0000
| 
|     * update install instructions ( --enable-<interface> -> --interface=<interface> )
|     * select functions seems to require a non const dirent* on DARWIN
| 
| M	src/ChangeLog
| M	src/INSTALL
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit be353a37fa800804cf8e37c88432cf89a16bb4a2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Feb 17 19:52:42 2007 +0000
| 
|     had to fix a few thinks to get it to compile on intel macs.
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit b2e548bb9613cba9bad93906c2c4e337410d8c99
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 16 16:13:23 2007 +0000
| 
|     make con/destructor public
| 
| M	src/distributions/hmm/GHMM.h
|  
* commit 7a051499ed777f030db7fca3d62da63297e252b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 15 17:17:23 2007 +0000
| 
|     minimize includes
| 
| M	python-modular/examples/wd_kernel.py
|  
* commit 84e2a716344004e162871e6e0ebdea1669143a77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 19:09:30 2007 +0000
| 
|     merge 0.3.0 changes back to trunk
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	R/sg/inst/doc/sg.Rnw
|  
* commit cf38a22c2c5ace53d98243d635fac7bf4a53fdaa
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Wed Feb 14 19:04:03 2007 +0000
| 
|     Don't count empty lines.
| 
| M	src/Makefile
|  
* commit 46d3598b9ea38a9dabccd14977f292c5ceebe8ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 17:15:43 2007 +0000
| 
|     * Release 0.3.0
|     * update developer README
| 
| M	src/README.developer
|  
* commit 4cfcc2aac1e4dbb25a2cf496ce3efd680202b025
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 17:11:52 2007 +0000
| 
|     this will be version 0.3.0, add io set_target_to_stderr/stdout functions
| 
| M	src/ChangeLog
| M	src/NEWS
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 33a5fcc55a51af5e0522f707b2d05e50812cac77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 11:14:51 2007 +0000
| 
|     NPP ->GNPP
| 
| M	matlab/examples/svm_classification.m
|  
* commit 39f1b4dd5aec1460e5df16467b971951164a985e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Wed Feb 14 10:40:51 2007 +0000
| 
|     Copyright info updated, fixed stopping condition bug.
| 
| M	matlab/examples/svm_classification.m
| M	matlab/examples/test_gnpp_svm.m
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/gnpplib.cpp
| M	src/classifier/svm/gnpplib.h
|  
* commit 0886349171f4af4b3ecb2acd54d242e8260a7704
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Feb 14 06:16:37 2007 +0000
| 
|     remove debug code, prepare for new release 0.3.1
| 
| M	src/ChangeLog
| M	src/NEWS
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 4bd92bf13a1090f6274ce3688c00206d34a9c9d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:28:05 2007 +0000
| 
|     add vojtech to authors / finish relabeling to GNPP SVM
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/guilib/GUISVM.cpp
|  
* commit e43f1ca7845ce762ffb6289c930d1c58baa55873
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:03:11 2007 +0000
| 
|     rename to gnpp
| 
| A	matlab/examples/test_gnpp_svm.m
| D	matlab/examples/test_npp_svm.m
|  
* commit 85e2c8c9c64e1cc5946784fafe39fedd6cc9c412
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 17:02:57 2007 +0000
| 
| A	matlab/examples/test_npp_svm.m
|  
* commit 9067e3601df866c799c69bbc06c6974116edf1d8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 16:57:23 2007 +0000
| 
|     + fixed some (?) npp svm bugs
| 
| M	src/ChangeLog
| M	src/classifier/svm/GNPPSVM.cpp
| M	src/classifier/svm/gnpplib.cpp
| M	src/kernel/Kernel.cpp
|  
* commit 03efdddf54138e1e030ba349d06141a31740391a
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Feb 13 15:46:24 2007 +0000
| 
|     swig interface
| 
| A	src/classifier/svm/GNPPSVM.i
|  
* commit cad22a45f14d27cb72de71683f8b3fdf5921e36e
| Author: Vojtech Franc <xfrancv@cmp.felk.cvut.cz>
| Date:   Tue Feb 13 15:45:59 2007 +0000
| 
|     added GNPP (Generalized Nearest Point Problem) SVM
| 
| A	src/classifier/svm/GNPPSVM.cpp
| A	src/classifier/svm/GNPPSVM.h
| M	src/classifier/svm/SVM.i
| A	src/classifier/svm/gnpplib.cpp
| A	src/classifier/svm/gnpplib.h
| M	src/guilib/GUISVM.cpp
| M	src/lib/common.h
|  
* commit 6921ec6509ee25df7151c58967053c20af3385de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 11:28:13 2007 +0000
| 
|     updated sections about macros
| 
| M	src/README.developer
|  
* commit f24eaf4cf80d6d0143a4658f3d0259e4a6f80a61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 10:46:23 2007 +0000
| 
| M	src/README.developer
|  
* commit 08f387d7be98caeb62df0119494833d58eaf9ffc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 10:45:53 2007 +0000
| 
|     + update coding conventions (limit #ifdef usage)
| 
| M	src/README.developer
|  
* commit b12ac51d16976497eb5a203e60d59b11e5334f59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Feb 13 09:28:37 2007 +0000
| 
|     updated authors and coding conventions
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/INSTALL
| M	src/README.developer
| M	src/classifier/svm/SVM.cpp
| M	src/features/CombinedFeatures.cpp
|  
* commit 3701bbc0bd218e59b41c91f4a121c44dab82467c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 18:20:41 2007 +0000
| 
|     works.
|     cleanup.
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit 2fe281aaef2a34355f804a39a30290d01f8a007d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:37:42 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 164f153402858c92715f92cfe3a528c7ed841433
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:33:21 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit dd1034928dc9ab5f5ecb7a4539864e569237f270
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:15:30 2007 +0000
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit ef8076a3214f1be3de28a4b33e373625bd44d2ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 17:08:35 2007 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 6d45785c00ca3b6e77ea8fb865371e3dd2c16c71
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 16:50:53 2007 +0000
| 
|     more debug output...
|     
|     PS: need this many checkins since I'm comparing matlab and python to give same results and need two svn checkouts in sync.
| 
| M	src/structure/Plif.cpp
|  
* commit cdc9a2dfb3fe70627e6e644e89c46e4d619f75a3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 12:07:23 2007 +0000
| 
|     * add combined kernel / combined features to python interf.
| 
| M	src/ChangeLog
| M	src/features/CombinedFeatures.i
| M	src/features/Features.i
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CombinedKernel.i
| M	src/kernel/Kernel.i
|  
* commit d95a7ab3e1a89b27f20102250714a6c10e2da6c3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:41:17 2007 +0000
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit f62ac829e9802997142b0ee8073cb98a68b499ba
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:37:17 2007 +0000
| 
|     some more fixes...
| 
| M	src/structure/Plif.cpp
| M	src/structure/PlifArray.cpp
|  
* commit b32c7db97dfb14a4f480636c6df9553589bb9f1a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:35:30 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/Plif.cpp
|  
* commit a069fa2abdf0f1b8131938bcae72ce307b2fbb26
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:20:08 2007 +0000
| 
|     more debug stuff ... (sorry for the spam).
| 
| M	src/structure/PlifArray.cpp
|  
* commit c9bc407a1b77b25a45714b5da4785fd46d95a7b5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:10:22 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/PlifArray.cpp
|  
* commit f56f90a2b96658547bfaba61802c2d92f1b4854d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Feb 12 11:04:47 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit ee4eca8f4572b458065b8aff8dd9e5e07e3d5057
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 10:05:25 2007 +0000
| 
|     * more examples cleanup
| 
| D	python-modular/examples/test_wdk.py
| A	python-modular/examples/wd_kernel.py
| D	python-modular/examples/wd_kernel2.py
| D	python-modular/examples/wd_kernel_debug.py
| A	python-modular/examples/wd_kernel_svm_linadd_batch.py
|  
* commit c9c0c94dae9d23fac2791c006025ae7458daec77
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Feb 12 10:02:41 2007 +0000
| 
|     * put python-modular examples in separate directory
|     * fix get_hist()
| 
| A	python-modular/examples/krr.py
| A	python-modular/examples/lda.py
| A	python-modular/examples/multiple_svms.py
| A	python-modular/examples/multiple_svms_matplotlib.py
| A	python-modular/examples/numpy_commands.py
| A	python-modular/examples/numpy_krr_matplotlib.py
| A	python-modular/examples/numpy_krr_sinc.py
| A	python-modular/examples/numpy_lda_matplotlib.py
| A	python-modular/examples/numpy_svm.py
| A	python-modular/examples/numpy_svm_matplotlib.py
| A	python-modular/examples/numpy_svr_sinc.py
| A	python-modular/examples/rbf_kernel.py
| A	python-modular/examples/spec_kernel.py
| A	python-modular/examples/stringfeatures.py
| A	python-modular/examples/test_wdk.py
| A	python-modular/examples/wd_kernel2.py
| A	python-modular/examples/wd_kernel_debug.py
| A	python-modular/examples/wd_kernel_svm.py
| D	python/examples/krr.py
| D	python/examples/lda.py
| D	python/examples/multiple_svms.py
| D	python/examples/multiple_svms_matplotlib.py
| D	python/examples/numpy_commands.py
| D	python/examples/numpy_krr_matplotlib.py
| D	python/examples/numpy_krr_sinc.py
| D	python/examples/numpy_lda_matplotlib.py
| D	python/examples/numpy_svm.py
| D	python/examples/numpy_svm_matplotlib.py
| D	python/examples/numpy_svr_sinc.py
| D	python/examples/rbf_kernel.py
| D	python/examples/spec_kernel.py
| D	python/examples/stringfeatures.py
| M	python/examples/test_mkl.py
| D	python/examples/test_wdk.py
| D	python/examples/testsuite.py
| D	python/examples/ut.py
| D	python/examples/wd_kernel.py
| D	python/examples/wd_kernel2.py
| D	python/examples/wd_kernel_debug.py
| M	src/features/Alphabet.i
|  
* commit e0980f2639c4c6e8d4ec55a4631d18fff188212b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 18:58:58 2007 +0000
| 
|     minor debug changes.
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 6dd7d26d4aef9e06d7a884ad2d01aa81406a66b9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 11 17:58:37 2007 +0000
| 
|     * add a configure test for powl(), as the ifdef construct in
|     lib/Mathmatics.h was flawed (damn!). now HAVE_POWL is set if
|     powl() exists
| 
| M	src/ChangeLog
| M	src/configure
| M	src/lib/Mathematics.h
|  
* commit 5482323d6b7f15bfcc05f66d33ece5d535d9c069
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Feb 11 16:43:34 2007 +0000
| 
|     * add powl function again (actually only the ifdef needed removal)
| 
| M	src/lib/Mathematics.h
|  
* commit ec2cb2f7ebaf7935bf5566efd583e8922b9f982b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:55:31 2007 +0000
| 
|     finally... the pow problem is gone.
|     G
| 
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
|  
* commit dc2e11d6ff77b04def3e6c3956bfd5fb21201c5b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:50:04 2007 +0000
| 
|     more problems with the pow function
| 
| M	src/lib/Mathematics.h
|  
* commit 96a5760c9c0a265cc76e1c87d0d93be264d51a81
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:47:03 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/Mathematics.h
|  
* commit ddb05fa98f114a605e59af0dc20c2349f5a1bcbd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Feb 11 14:27:15 2007 +0000
| 
|     somebody did not complete code here ...
|     G
| 
| M	src/lib/Mathematics.h
|  
* commit b6f55a479d088a499729f8509cb7d9ce875cff8a
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Sat Feb 10 20:06:29 2007 +0000
| 
|     added support for similarity coefficients (which boils down to some strange normalization of the histogram intersection kernel. this is unpublished, btw.)
| 
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit a0a04badc0134638ec3d0aaee78c18ef748270b0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Feb 10 06:34:59 2007 +0000
| 
|     + fall back to double precision pow if powl is not available
| 
| M	src/ChangeLog
| M	src/lib/Mathematics.h
|  
* commit 75c09ef7b2e28fa2d0f1d1afba81ac027124952a
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 17:22:29 2007 +0000
| 
|     improved mindy features and kernel
|     cur_time fix in time class
|     support for max_train_time in svm light
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/lib/Time.h
|  
* commit ba46de2b47dc49b4966c82564ef88561da995704
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 11:56:48 2007 +0000
| 
|     fixed incorrect matlab interface to changed Mindy functions
| 
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
|  
* commit adc69fcbaa12d0901ac544d28ad8b9bcd184ef60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 9 11:32:22 2007 +0000
| 
|     * make empty files (strings) a fatal error
| 
| M	src/features/StringFeatures.h
|  
* commit 55bb809ba24847e6cda3438a3e6c9110deaf6e6b
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 10:34:02 2007 +0000
| 
|     removed annoying goto statement
| 
| M	src/kernel/MindyGramKernel.cpp
|  
* commit 4be39b77fbef0e59d129f85aaf6d99c1aa5fb208
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Feb 9 10:32:31 2007 +0000
| 
|     more mindy changes
| 
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit ad98c89cb3c99ac5015c3443cc88e3ab0dae9043
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Feb 9 10:29:31 2007 +0000
| 
|     fix for spectrum kernel (yet another init problem)
| 
| M	src/ChangeLog
| M	src/features/MindyGramFeatures.i
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/MindyGramKernel.i
|  
* commit 4d72140a075b08531f2d4893a8a7ecb0e8ac7c19
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 8 19:59:06 2007 +0000
| 
|     * add typemapped get_hist() function
| 
| M	src/ChangeLog
| M	src/features/Alphabet.h
| M	src/features/Alphabet.i
|  
* commit 85ef7ee88b11c849a64f0601bac96f7e3e669dd4
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Feb 8 15:27:54 2007 +0000
| 
|     untested patches for matlab gui
| 
| M	src/guilib/GUIFeatures.h
|  
* commit 8c657f18d894ff6ac3d9a8ecb2cfe4e7a8a50607
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Feb 8 15:23:23 2007 +0000
| 
|     fixed bugs in mindy and improved swig support
| 
| M	src/configure
| M	src/features/Features.i
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/MindyGramFeatures.i
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/MindyGramKernel.i
|  
* commit e88908000efd79c778b2ed2c8059c2572ce7e3b8
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Wed Feb 7 18:49:58 2007 +0000
| 
|     * don't use grep to count lines
| 
| M	src/Makefile
|  
* commit 11b32f0f7ef83aa85aa181055b8042919a66e783
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Mon Feb 5 13:00:12 2007 +0000
| 
|     NULL may not be defined.
| 
| M	src/configure
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit 6eb0b185284b3267372d79737774c7ce29a55763
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Feb 1 14:12:37 2007 +0000
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 5f2593c6ee00abadc782dc784af6e7f1567101d1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Feb 1 13:39:15 2007 +0000
| 
|     * updated make linecount ... hmmhh 83556 lines
| 
| M	src/Makefile
| M	src/TODO
| M	src/configure
|  
* commit 0206c7ed1b8e241d22efe264b598dd7d6c70ef8e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 09:56:30 2007 +0000
| 
|     * rename  best_path_set_seq to best_path_set_seq3d
|     
|     GU -> please NOTE!
| 
| M	src/ChangeLog
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 741931ecc9b8f7721ee250dfe404cdf694e49cca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 08:02:24 2007 +0000
| 
|     * the forgotten file...
| 
| A	src/lib/ShogunException.i
|  
* commit 786b92000323d024a4fdf1ec2c57dfe7c94b6349
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 07:58:18 2007 +0000
| 
|     * also call base constructors here
| 
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/regression/KRR.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 649b214bdd2b1290355db4c8dbcca39c314a1187
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 31 07:45:09 2007 +0000
| 
|     * updated wd examples
|     * fix init for wd kernel
|     * call KernelMachine Constructor in SVM constructor
| 
| M	python/examples/test_wdk.py
| M	python/examples/wd_kernel.py
| M	python/examples/wd_kernel2.py
| M	python/examples/wd_kernel_debug.py
| M	src/ChangeLog
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 3421b96af552d6a2b890a507ee74b690ee881980
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 29 14:33:50 2007 +0000
| 
|     * swig exception handling
|     * LDA examples
|     * updated krr/svm examples
| 
| A	python/examples/lda.py
| M	python/examples/numpy_krr_matplotlib.py
| A	python/examples/numpy_lda_matplotlib.py
| M	python/examples/numpy_svm_matplotlib.py
| M	src/.generate_link_dependencies.py
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| M	src/distance/Distance.i
| M	src/distributions/Distribution.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/lib/ShogunException.cpp
| M	src/lib/ShogunException.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/io.i
| M	src/preproc/PreProc.i
| M	src/regression/Regression.i
| M	src/structure/Structure.i
|  
* commit 0bbd78640359b6130b02ce2a10a74d52a7d62a0e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 14:20:05 2007 +0000
| 
|     added DistanceKernel creation to create_kernel method
| 
| M	src/guilib/GUIKernel.cpp
|  
* commit e0c4f9161f2b462b691a1b11aefd9bcc27f80cfc
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 14:03:36 2007 +0000
| 
|     added CanberraWordDistance
| 
| M	src/guilib/GUIDistance.cpp
|  
* commit b1589dadc668e141246bf37495ef894233c84e5e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Mon Jan 29 13:39:44 2007 +0000
| 
|     change init (init call for CKernel) and delete (Distance=NULL)
| 
| M	src/kernel/DistanceKernel.cpp
|  
* commit 7ac392e98f0d540545479cab36c201218c3d2e70
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 29 09:31:21 2007 +0000
| 
|     * finally a working pinv and LDA :-)
|     * overload classify() for linear / kernel methods
|     * compile fixes for suffixarray/Spec kernel
|     * trying to get exceptions working
| 
| M	src/ChangeLog
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/configure
| M	src/features/StringFeatures.i
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/SpectrumKernel.cpp
| M	src/lib/Array2.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/io.i
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ESA.h
| M	src/lib/suffixarray/ErrorCode.h
|  
* commit cdcf196db1bf8172d0725087d749b806cec0b823
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 28 17:50:20 2007 +0000
| 
|     changed dimensionality of seq_matrix in best_path_trans.
|     It is three dimensional now and the third dimension has to match with the second dimension of state_signals.
|     untestet
|     
|     @Soeren, when you use it, just drop the second column of state_signals (with all zeros in it).
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 2749893f1be5f6a3631e5566b9d87ee5feea88be
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 15:34:59 2007 +0000
| 
|     * quieten status printouts for modular python interface
| 
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit 2b494fa26f5802d79bd6ee3ead9370291e8232f8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 13:58:58 2007 +0000
| 
|     compile fix for distance stuff
| 
| M	src/ChangeLog
| M	src/distance/RealDistance.h
| M	src/distance/StringDistance.h
|  
* commit 5f73bb09d7513bb6c5f92bed3998c48c77603f0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 26 13:55:04 2007 +0000
| 
|     * move CMath math declaration into base/SGObject.cpp
|     * move version printout into CMath ...
| 
| M	src/ChangeLog
| M	src/base/SGObject.cpp
| M	src/distance/CanberraWordDistance.cpp
| M	src/gui/TextGUI.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
|  
* commit fda7d43a65662b2f15bfe24bb8438ca245d16c9e
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:49:24 2007 +0000
| 
|     change some lines; add new distance interfaces
| 
| M	src/distance/Distance.i
| M	src/distance/SimpleDistance.i
|  
* commit 457ba421e530fa793801f24ef82d0b7f7f699fe6
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:48:28 2007 +0000
| 
|     swig interface files
| 
| A	src/distance/CanberraWordDistance.i
| A	src/distance/HammingWordDistance.i
| A	src/distance/ManhattanWordDistance.i
|  
* commit a9e3ae51d2d1269d5235347b05e316e637cc4203
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:27:58 2007 +0000
| 
|     swig interface: DistanceKernel
| 
| A	src/kernel/DistanceKernel.i
|  
* commit ee33b95baee9bce6f69857851b1888b7a311d8cd
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:25:06 2007 +0000
| 
|     new kernel; uses distance objects
| 
| A	src/kernel/DistanceKernel.cpp
| A	src/kernel/DistanceKernel.h
|  
* commit 8f59cc994b38937d2b60ead7c74c770986a041d4
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:20:37 2007 +0000
| 
|     distance adjustment
|      Diese und die folgenden Zeilen werden ignoriert --
|     
|     M    GUIDistance.cpp
| 
| M	src/guilib/GUIDistance.cpp
|  
* commit 31c412982908032238ac19f81e32839fe4f9511d
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:18:35 2007 +0000
| 
|     renewed
| 
| M	src/distance/StringDistance.h
|  
* commit 03f6c64ba75c7fcdaa3ab5cd929982e508b78882
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:17:52 2007 +0000
| 
|     new distances
| 
| A	src/distance/CanberraWordDistance.cpp
| A	src/distance/CanberraWordDistance.h
| A	src/distance/HammingWordDistance.cpp
| A	src/distance/HammingWordDistance.h
| A	src/distance/ManhattanWordDistance.cpp
| A	src/distance/ManhattanWordDistance.h
|  
* commit 2700cb263eb4d2e5007a57c4657757c2ac7c5d0c
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 14:15:40 2007 +0000
| 
|      renewed distance
| 
| M	src/distance/Canberra.cpp
| M	src/distance/Canberra.h
| M	src/distance/Chebyshew.cpp
| M	src/distance/Chebyshew.h
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distance/Geodesic.cpp
| M	src/distance/Geodesic.h
| M	src/distance/Jensen.cpp
| M	src/distance/Jensen.h
| M	src/distance/Manhattan.cpp
| M	src/distance/Manhattan.h
| M	src/distance/Minkowski.cpp
| M	src/distance/Minkowski.h
| M	src/distance/SimpleDistance.h
|  
* commit f1342d6ee451ddef8e5c28d95aad59b93128ecbd
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Thu Jan 25 13:57:28 2007 +0000
| 
|     added K_DISTANCE and D_CANBERRA
| 
| M	src/lib/common.h
|  
* commit 5c057d65178b9a5b96c86c3d38feab7bc359e7b4
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jan 25 13:41:12 2007 +0000
| 
|     + added 'const' in overloaded operator=
| 
| M	src/lib/Array.h
| M	src/lib/Array3.h
|  
* commit 78a5cc5cc1cf8fd2ef82f8115e63a144710fda21
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 25 12:48:12 2007 +0000
| 
|     * quieten svn2cl error (if svn2cl does not exist)
| 
| M	src/Makefile
|  
* commit a3d5e9fe8e63e0ae54afe7bf40566d8b1871b3f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 25 11:37:35 2007 +0000
| 
|     * remove some debug output
|     * array display functions use name now
| 
| M	src/ChangeLog
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/structure/DynProg.cpp
|  
* commit 10132c685ae920a703860db07a3042d4c7f81efb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 24 18:45:11 2007 +0000
| 
|     preparation for changes ... should work as before...
|     G
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 31dd5d249c1bb5ee5bb2ab689d5e9ac791810c09
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 24 11:00:18 2007 +0000
| 
|     -updates for the debian package
|     	* compile fix for don't use svmlight
|     	* updated project URL
| 
| M	Makefile
| M	R/Makefile
| M	R/Makefile.sed
| M	src/README
| M	src/regression/Regression.i
|  
* commit 30d1362194311fa03717f3f59e5b8c4923614218
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 23 16:40:31 2007 +0000
| 
|     + add c.gehl to authors
|     + create a global cio variable for static interfaces that points
|      to the static io variable in CSGObject to get a global loglevel option;
|      for modular interfaces this is tweakably per class (except for static
|     		 functions/ C-files where a global sg_io variable is used)
| 
| M	src/.authors
| M	src/ChangeLog
| M	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/gui/GUI.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 2fe8a32681fa8d3647b08b5a7d6c3d4599885db0
| Author: Christian Gehl <christian.gehl@trifense.de>
| Date:   Tue Jan 23 15:15:47 2007 +0000
| 
|     new distance types
| 
| M	src/lib/common.h
|  
* commit 312ad04fabdcf312136e0ce3536ffe71713587e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jan 23 12:18:17 2007 +0000
| 
|     +get_loglevel()
| 
| M	src/ChangeLog
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/preproc/SortUlongString.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 5b2f875486b82e4e822a19b5829105cf318bfd7f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 22 14:13:34 2007 +0000
| 
|     scores & losses should be return arguments...
|     
|     G
| 
| M	src/structure/DynProg.h
|  
* commit fb05a0bd7b046df865112e616389135b5c8d7cbe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 13:51:33 2007 +0000
| 
|     - don't regroup changelog
| 
| M	src/ChangeLog
| M	src/Makefile
|  
* commit 87fbfab2ba1e69b733642f3e7fb34bf7a3f8fa51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 10:05:39 2007 +0000
| 
|     + matlab build fix
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 05918ece834c080974225525721d0cbb48effaf3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:50:01 2007 +0000
| 
|     - forgotten wd kernel example
| 
| A	python/examples/wd_kernel_debug.py
|  
* commit e02afe1e1b85baf40b82c3ccd588d422f9076467
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:46:02 2007 +0000
| 
|     + updated python examples
| 
| M	python/examples/krr.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_krr_matplotlib.py
| M	python/examples/numpy_krr_sinc.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| A	python/examples/numpy_svr_sinc.py
| M	python/examples/rbf_kernel.py
| M	python/examples/wd_kernel.py
|  
* commit eb24cab2fe465cb2d387b0392cd73d70c43c71ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 22 09:45:19 2007 +0000
| 
|     - configure now uses ./configure --interface=INTERFACE
|     	where INTERFACE is one of cmdline, python-modular, python, R,
|     	R-modular octave or matlab
|     - moved Kernel Ridge Regression into regression/
|     - python swig interface now has a fully wrapped Regression, Preprocessor and Distribution module
|     - version class functions are now static
|     - HMM now uses #parallel threads as specified by CParallel
|     - enabled typed autodoc for all modules
|     - update copyright -> 2007
|     - updated swig python examples (new: svr regression, updated: krr regression/svm examples)
| 
| M	src/Makefile
| A	src/base/SGObject.cpp
| M	src/base/SGObject.h
| M	src/base/SGObject.i
| M	src/base/Version.cpp
| M	src/base/Version.h
| M	src/classifier/Classifier.i
| D	src/classifier/KRR.cpp
| D	src/classifier/KRR.h
| D	src/classifier/KRR.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| A	src/distance/Canberra.i
| A	src/distance/Chebyshew.i
| M	src/distance/Distance.cpp
| M	src/distance/Distance.i
| M	src/distance/DistanceMachine.i
| A	src/distance/Geodesic.i
| A	src/distance/Jensen.i
| A	src/distance/Manhattan.i
| A	src/distance/Minkowski.i
| A	src/distance/RealDistance.i
| A	src/distance/SimpleDistance.i
| A	src/distance/StringDistance.i
| M	src/distributions/Distribution.i
| A	src/distributions/histogram/Histogram.i
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| A	src/distributions/hmm/GHMM.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM.i
| M	src/distributions/hmm/LinearHMM.h
| A	src/distributions/hmm/LinearHMM.i
| M	src/features/Features.i
| M	src/features/SparseFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.h
| M	src/kernel/KernelMachine.i
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Library.i
| A	src/preproc/LogPlusOne.i
| A	src/preproc/NormDerivativeLem3.i
| A	src/preproc/NormOne.i
| M	src/preproc/PCACut.cpp
| A	src/preproc/PCACut.i
| M	src/preproc/PreProc.i
| A	src/preproc/PruneVarSubMean.i
| A	src/preproc/RealPreProc.i
| A	src/preproc/ShortPreProc.i
| A	src/preproc/SimplePreProc.i
| A	src/preproc/SortWord.i
| A	src/preproc/SortWordString.i
| A	src/preproc/SparsePreProc.i
| M	src/preproc/StringPreProc.i
| A	src/preproc/WordPreProc.i
| A	src/regression/KRR.cpp
| A	src/regression/KRR.h
| A	src/regression/KRR.i
| A	src/regression/Regression.i
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| A	src/regression/svr/LibSVR.i
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| A	src/regression/svr/SVR_light.i
| M	src/structure/DynProg.cpp
| M	src/structure/Structure.i
|  
* commit 4aa296dbd61102a81e36badaae331f70e89980cd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 21 22:04:13 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit b61b97760bff93e33813607d391c040ec3e10254
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jan 21 21:50:35 2007 +0000
| 
|     first version ... for what's needed to go on with mSplicer.
|     
|     G
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a9eadbb4edeea0412f050422f68f73271fa1da4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 20 18:22:29 2007 +0000
| 
|     - matlab build fix
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/Plif.cpp
|  
* commit 9b6dd6d04275db340c18d70733ddc8d07bd74458
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 20 17:44:53 2007 +0000
| 
|     - updated coding conventions
|     - new io functions SG_DEBUG, SG_ERROR etc - use only those!
|     	this will through exceptions in python
|     - kernel init function takes only lhs + rhs
|     - all objects now derive from CSGObject
| 
| M	Makefile
| M	src/ChangeLog
| M	src/README.developer
| M	src/base/SGObject.h
| M	src/base/Version.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/distance/Distance.cpp
| M	src/distance/SimpleDistance.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	src/exceptions/AlphabetException.cpp
| D	src/exceptions/AlphabetException.h
| D	src/exceptions/ClassifierException.cpp
| D	src/exceptions/ClassifierException.h
| D	src/exceptions/Exception.h
| D	src/exceptions/FeatureException.cpp
| D	src/exceptions/FeatureException.h
| D	src/exceptions/KernelException.cpp
| D	src/exceptions/KernelException.h
| D	src/exceptions/LabelException.cpp
| D	src/exceptions/LabelException.h
| D	src/exceptions/PluginException.cpp
| D	src/exceptions/PluginException.h
| D	src/exceptions/SVMException.cpp
| D	src/exceptions/SVMException.h
| D	src/exceptions/ShogunException.cpp
| D	src/exceptions/ShogunException.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CombinedFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| A	src/lib/ShogunException.cpp
| A	src/lib/ShogunException.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/numpy.i
| M	src/preproc/PCACut.cpp
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/StringPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
|  
* commit 5b5a34357b41d142ecffab3d30ca56edb2abdabb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 17:05:18 2007 +0000
| 
|     +best_path*deriv setup functions
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 20b96faddae1936cefce5653f5f74bcf00d5f218
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 15:59:21 2007 +0000
| 
|     + rbf kernel example
|     + preproc + sortulong fix
| 
| A	python/examples/rbf_kernel.py
| M	src/preproc/PreProc.i
| M	src/preproc/SortUlongString.i
|  
* commit 63ee6e88b7c6f812765d7ac1538c595cfaafbc59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 13:55:01 2007 +0000
| 
|     +added SGObject to object hierarchy
|     +fixed forward declaration of StringFeatures
| 
| M	src/ChangeLog
| M	src/classifier/Classifier.i
| M	src/distance/Distance.i
| M	src/distributions/hmm/HMM.i
| M	src/features/Features.i
| M	src/features/StringFeatures.h
| M	src/kernel/Kernel.i
| M	src/lib/Library.i
| M	src/preproc/PreProc.i
| M	src/structure/Structure.i
|  
* commit 6b37a456ff7d00f18fbe1329a263b416339f2aa9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jan 19 13:41:00 2007 +0000
| 
|     + added first preprocessing interfaces
| 
| M	src/kernel/Kernel.i
| A	src/preproc/PreProc.i
| A	src/preproc/SortUlongString.i
| A	src/preproc/StringPreProc.i
|  
* commit 6c044f4fe40765413780bfadcad3a041f6da06a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 11:53:31 2007 +0000
| 
|     automagic ChangeLog generation using svn2cl
|     (debian package subversion-tools)
| 
| A	src/.authors
| M	src/ChangeLog
| M	src/Makefile
| A	src/NEWS
|  
* commit c80dc3ddb4324545d9c4e7872575d955537244f3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 10:44:06 2007 +0000
| 
|     -move the `base' objects (Parallel/SGObject/Version) into base/
|     -except for the GUI and io everything should be (directly or indirectly)
|     	derived from SGObject
| 
| A	src/base/Parallel.cpp
| A	src/base/Parallel.h
| A	src/base/Parallel.i
| A	src/base/SGObject.h
| A	src/base/SGObject.i
| A	src/base/Version.cpp
| A	src/base/Version.h
| A	src/base/Version.i
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/distributions/Distribution.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Features.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/Library.i
| M	src/lib/Mathematics.h
| D	src/lib/Parallel.cpp
| D	src/lib/Parallel.h
| D	src/lib/Parallel.i
| D	src/lib/SGObject.h
| D	src/lib/SGObject.i
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| D	src/lib/Version.cpp
| D	src/lib/Version.h
| D	src/lib/Version.i
| M	src/preproc/PreProc.h
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/DynProg.h
| M	src/structure/PlifBase.h
|  
* commit 3aca8c518ef238da7cbb6881a5f539da5af3bd23
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 19 10:14:18 2007 +0000
| 
|     make all objects to be derived from SGObject
| 
| M	src/classifier/Classifier.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LinearClassifier.h
| M	src/classifier/LinearClassifier.i
| M	src/distance/Distance.h
| M	src/distributions/Distribution.h
| M	src/features/Features.h
| M	src/kernel/Kernel.h
| M	src/lib/Array.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.h
| M	src/lib/Library.i
| M	src/lib/Mathematics.h
| A	src/lib/SGObject.h
| A	src/lib/SGObject.i
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/preproc/PreProc.h
| M	src/structure/DynProg.h
| M	src/structure/PlifBase.h
|  
* commit d1bea94477532e9b9a299966101bf0693821bc88
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 18 16:04:50 2007 +0000
| 
|     get path interf.
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.i
|  
* commit d67667712b9b110287aa99c685c21edc09f224ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 18 09:30:12 2007 +0000
| 
|     +yesterdays msplicer related fixes/debug output
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 5b50130c5026f429a95f32023a533a5303645a76
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Jan 17 10:10:05 2007 +0000
| 
|     some more outputs...
|     G
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit b0f59aded96974a51c5437cffb3994f944d1b635
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 15 17:01:33 2007 +0000
| 
|     some fixes and checks for oldtempvv and oldtempii.
|     (taking Soerens valgrind runs into account)
| 
| M	src/structure/DynProg.cpp
|  
* commit 45387a05176a2ef4bd964ed79b056757f3f203b4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 11 15:55:51 2007 +0000
| 
|     additional check ...
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 4545d6601f5cb163a0ef8c4b9c83827aa5c374ab
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Jan 11 11:28:58 2007 +0000
| 
|     *** empty log message ***
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 4c68f55f2bdb7baa650d636be2136a963030b002
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 20:08:15 2007 +0000
| 
|     + configure/Makefile install path fix
| 
| M	src/Makefile
| M	src/configure
|  
* commit 14eb30950bf6f2fe064a9b7311041643cc04bd4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 19:27:29 2007 +0000
| 
|     fix
| 
| M	Makefile
|  
* commit 47a0f5ac3a0193a5ab5efd1c67f689f906fbe35e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 10 19:22:36 2007 +0000
| 
|     + improved debian target / version generation
| 
| M	Makefile
| M	src/.version.sh
|  
* commit 4682221b52aafb63c5c734f2a1f9cf4031af8c8d
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jan 10 15:13:41 2007 +0000
| 
|     removed testfile
| 
| D	src/testfile
|  
* commit 402325697cd03ebe752025b47f004a1698f08cd2
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jan 10 14:41:31 2007 +0000
| 
|     added just to see whether the SVNPoller script works
| 
| A	src/testfile
|  
* commit 9f1e75bcc1c8b108b49e06ef3882fb0b397b4989
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 14:30:38 2007 +0000
| 
|     .version.sh calls svn info again, as $Id is not regularly updated...
| 
| M	src/.version.sh
|  
* commit ffa2d77c58b867b80822fe02b65448274ae76263
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 10:13:24 2007 +0000
| 
|     update copyright info
|     1999-2006 -> 1999-2007
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KRR.cpp
| M	src/classifier/KRR.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distance/Canberra.h
| M	src/distance/Chebyshew.h
| M	src/distance/Distance.cpp
| M	src/distance/DistanceMachine.cpp
| M	src/distance/DistanceMachine.h
| M	src/distance/Jensen.h
| M	src/distance/Manhattan.h
| M	src/distance/Minkowski.cpp
| M	src/distance/Minkowski.h
| M	src/distance/RealDistance.h
| M	src/distance/StringDistance.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynamicArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathematics.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Trie.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
| M	src/structure/PlifBase.h
|  
* commit bf9438644d4418605f043eb68bf2a0f6a6b2cc1b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 10:06:56 2007 +0000
| 
|     -remove obsolete tests dir
| 
| D	src/tests/script2
| D	src/tests/test_it.scr
| D	src/tests/test_it2.scr
|  
* commit 2d83174548d1949cefc8678565590c031c678c34
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jan 8 09:23:29 2007 +0000
| 
|     +fix configure/parallel to really detect __SC_NPROCESSORS_ONLN
|     +allow setting of a single genestr
| 
| M	src/configure
| M	src/lib/Parallel.h
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 792aca84b55c4681c3ff2625e2f5a55ecce2faed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Jan 8 09:21:27 2007 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 5911a0e82269efbb02f0a470096470caa5e2288d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jan 6 10:49:45 2007 +0000
| 
|     +#ifdef _SC_NPROCESSORS_ONLN
| 
| M	src/lib/Parallel.h
|  
* commit 58219ae9074793d25227faa0d7c70740ebbf4f62
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 5 17:16:10 2007 +0000
| 
|     +remove more of svmlight
|     +compiler tuning now takes place after compiler is detected
|     and only valid options are added
| 
| M	Makefile
| M	src/configure
|  
* commit eaaad53209e8d59b7a2da2acc025085893b3da1a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jan 5 15:18:24 2007 +0000
| 
|     +really remove all copyrighted "all rights reserved" SVMLight files + parts
|     
|      when called with, e.g.:
|     
|     	$ make vanilla-package COMPRESS=gzip EXTRAVERSION=+svn20070105 SVMLIGHT=no
| 
| M	Makefile
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.i
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUISVM.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 1d21919d1d614d4498c64f26afc7142ca40da044
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jan 4 17:03:32 2007 +0000
| 
|     +all the necessary stuff for spam detection works now
|     	speed & accuracy are still an isssue
| 
| M	python/examples/stringfeatures.py
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/gui/Matlab.cpp
| M	src/gui/R.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIR.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommUlongStringKernel.i
| M	src/kernel/CommWordStringKernel.i
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/StringKernel.i
| M	src/lib/common.h
|  
* commit d3bcba4988503eabeca98b7ecfc5b138ba5662a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 3 23:50:46 2007 +0000
| 
|     +string features can now easily read strings-files from a directory (to classify e.g. spam)
| 
| A	python/examples/stringfeatures.py
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
|  
* commit 228883bc3344fd99a3c878c8c8b795b1054b4f13
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 17:17:47 2007 +0000
| 
|     added a todo to KRR.cpp
| 
| M	src/classifier/KRR.cpp
|  
* commit 8f9d4039fee6257cffd463aa3aaed7b66711985a
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 17:16:26 2007 +0000
| 
|     Hello!
|     
|     KRR is working now, together with two examples for python.
|     Yuhu!
|     
|     -M
| 
| A	python/examples/krr.py
| A	python/examples/numpy_krr_matplotlib.py
| A	python/examples/numpy_krr_sinc.py
| M	src/classifier/Classifier.i
| M	src/classifier/KRR.cpp
| M	src/classifier/KRR.h
| M	src/classifier/KRR.i
|  
* commit c9c39a5df4783559775ab3d8e222c0708349eb45
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 15:59:16 2007 +0000
| 
|     forgot something
| 
| M	src/lib/common.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
|  
* commit c796534a1ce945c1ea8f06e281dd07ea47bc4a03
| Author: Mikio Braun <mikio@cs.tu-berlin.de>
| Date:   Wed Jan 3 15:52:21 2007 +0000
| 
|     Kernel-ridge-regression
| 
| A	src/classifier/KRR.cpp
| A	src/classifier/KRR.h
| A	src/classifier/KRR.i
|  
* commit 69975f2e7d556d31f9fef2eda52c209652ed5b67
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jan 3 11:39:55 2007 +0000
| 
|     +LINK is now is set from COMP_CPP
|     +Array uses ASSERT again and undefs/defs ASSERT
| 
| M	src/configure
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
|  
* commit d63b9765ab7a15b598542275ce02a63d6b1c7bde
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Dec 30 00:08:35 2006 +0000
| 
| M	src/features/StringFeatures.h
|  
* commit 063796add0ac77bdb6e78fbde37225421df87403
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 23:56:50 2006 +0000
| 
|     now with conservation.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 3e079f27d9d6daaacaa2cdfb6f53db29cf8b5e8f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 23:13:11 2006 +0000
| 
|     before I change the conservation stuff...
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
|  
* commit c336de49e6a762bfa0094569011815c2a893d479
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 29 23:01:34 2006 +0000
| 
|     +read_dir
| 
| M	src/features/StringFeatures.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit c0c739dddeddcf4bb85eb483475e8ace392ecfc9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 16:26:35 2006 +0000
| 
|     should work for nGASP cat-1
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/PlifArray.cpp
|  
* commit 2d0efc758902787198c26c8b3a25327ca5b40ba9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 29 16:20:54 2006 +0000
| 
|     missing endif
| 
| M	src/lib/lapack.h
|  
* commit 7635c10607c3f0379b094f9bd7c11d7cd6f3bbf3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Dec 29 11:00:27 2006 +0000
| 
|     optimized best_path_trans svm computations.
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommWordKernel.h
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit a83055135ea8c0f45f122220b7a65545a0dabf6b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Dec 28 17:44:52 2006 +0000
| 
|     fixed ifndef -> ifdef line 118
| 
| M	src/lib/Array.h
|  
* commit 8979ef19ef67919c31434ef6fee1e49460f8c34e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 28 16:18:07 2006 +0000
| 
|     get rid of another bazillion of warnings
| 
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit 355a6e60e10113ac3bac732dee1be7cd96c87dab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 28 16:13:41 2006 +0000
| 
|     compile fix
| 
| M	src/structure/DynProg.cpp
|  
* commit 664cc2fee7d824f24b2eb0560feb66ad3bd355b7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Dec 28 16:02:23 2006 +0000
| 
|     + sorry, forgot to check-in these files
| 
| A	src/exceptions/ShogunException.cpp
| A	src/exceptions/ShogunException.h
|  
* commit 0a88560672192ad749aca90ba69a5edd2afbcbc9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 27 14:23:44 2006 +0000
| 
|     reverted to the old Array.h version including the statistics.
| 
| M	src/lib/Array.h
|  
* commit f0f476d563b2cb606d5a094025017938452386d8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 27 13:34:18 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit f76c120a233f84a9cfd4aabc4e4759eb2c341060
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Dec 22 12:11:19 2006 +0000
| 
|     + removed the rest of the ugly ifdefs
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 855c54fe8cd64fcb85f93af81897c957758b2750
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Dec 22 11:48:01 2006 +0000
| 
|     + added sg_error function so lib/io
|     + removed ugly #ifdef HAVE_PYTHON throw Exception else CIO
|       by sg_error(func_ptr,fmt,...)
|     
|     TODO:
|     + not all exceptions were removed.
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/exceptions/Exception.h
| M	src/features/Alphabet.cpp
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/io.cpp
| M	src/lib/io.h
|  
* commit eff3de69c6bf9e9866e3ac191500d1b8f2fffdca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 18:28:20 2006 +0000
| 
|     +tiny fixes
| 
| M	src/lib/io.h
| M	src/structure/DynProg.i
|  
* commit 3b265860b0975d04ec99e3c43d82f9b3dd58b221
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 13:23:10 2006 +0000
| 
|     +forgotten interface files
| 
| A	src/lib/Array.i
| A	src/lib/Array2.i
| A	src/lib/Array3.i
| A	src/lib/DynamicArray.i
|  
* commit dc122cd830d90228b714701c7ab0851bb0d83b50
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 21 11:26:31 2006 +0000
| 
|     -remove array profiling stuff (what are profilers for huh ?)
|     +dynprog now uses dynarray...
|     +actually anything that requires a list should use DynamicArray !
| 
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/Library.i
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d2eab0963890ecd6ea9242c20535040ca2987e75
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 23:36:03 2006 +0000
| 
|     a few changes related to path sampling.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit e0599fce62452e1d25139066890e825f61021240
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 23:25:24 2006 +0000
| 
|     implemented some kind of suboptimal path sampling.
| 
| M	src/structure/DynProg.cpp
|  
* commit 96aec387424e1905fbe1ba040b545ec68f879aaf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 21:01:32 2006 +0000
| 
|     +split up r-package & vanilla-package build
| 
| M	Makefile
|  
* commit 842a7483377937b180fcc70cb13bb75e2e6a9e6e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:55:39 2006 +0000
| 
| M	src/gui/R.cpp
|  
* commit d3945fc242c77be2621f24c555e4c21874b5e5a4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:33:41 2006 +0000
| 
|     +build fix
|     -remove obsolete @hmm
| 
| D	matlab/examples/@hmm/backward.m
| D	matlab/examples/@hmm/bw_a.m
| D	matlab/examples/@hmm/bw_b.m
| D	matlab/examples/@hmm/bw_p.m
| D	matlab/examples/@hmm/bw_q.m
| D	matlab/examples/@hmm/forward.m
| D	matlab/examples/@hmm/gamma.m
| D	matlab/examples/@hmm/hmm.m
| D	matlab/examples/@hmm/xi.m
| M	src/gui/R.cpp
|  
* commit 3552f4ab26eeef861db14061316d36c3b7211e9e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 20:09:42 2006 +0000
| 
|     compile fix
| 
| M	src/lib/io.cpp
|  
* commit ec4ede1939c9b4b389192a2b712d1f7f8b160886
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 19:47:04 2006 +0000
| 
| A	src/structure/PlifArray.i
|  
* commit 9d05d730011baf3d372b59c793dc0b10efadbdfa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 18:21:36 2006 +0000
| 
|     +CAUTION: reverted DynamicArray to original dynarray (+some bugfixes)
| 
| D	src/g.R
| M	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
| M	src/structure/PlifArray.cpp
| M	src/structure/Structure.i
|  
* commit 07a62605c1ad87ba0b7bc436f5fb7c8616008665
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 15:48:47 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/DynamicArray.h
|  
* commit 851f7ce0b41c3e43c43fded679332e0c45d5ae7f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 12:43:08 2006 +0000
| 
|     ifndef  -> ifdef HAVE_MATLAB...
| 
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
|  
* commit a6b8c7630ff2d9c02d785930451c597f01f679c8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 10:42:00 2006 +0000
| 
|     also erase .R files on clean
| 
| M	src/Makefile
| M	src/lib/Time.i
|  
* commit d874c710c3d492875ad3e0e99c2c783c05bbe7f9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 20 10:38:17 2006 +0000
| 
|     does not compile without this fix.
| 
| M	src/guilib/GUIHMM.cpp
|  
* commit e2b95c27d4a9965806e0e8efb8f0d8a00049e836
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 20 09:10:08 2006 +0000
| 
|     +make configure append CFLAGS, CXXFLAGS from environment
|     +./configure --cflags= --cxxflags=
|     +COMPFLAGS_SWIG_CPP is generated from COMPFLAGS_CPP but does not give any warnings
|     +fix renaming Classes CTime -> Time
|     +fix several format string errors
|     +make gpdt svm use CIO::message
|     
|     want to know how many CPUs your machine has ? then do:
|     
|     from shogun.Library import Parallel
|     print Parallel.get_num_cpus()
|     
|     (msplicer already uses this :)
| 
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/configure
| M	src/lib/File.cpp
| M	src/lib/Library.i
| M	src/lib/List.i
| M	src/lib/Mathematics.i
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.i
| M	src/lib/Version.i
| D	src/lib/config.i
| M	src/lib/io.cpp
| M	src/lib/io.i
|  
* commit 100cd82cae3ff1b70ac7471d334e9645c5fbba91
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 21:43:55 2006 +0000
| 
|     +export everything under lib as shogun.Library
|     (for that it was necessary to make the local classes in CTrie local)
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Cache.i
| M	src/lib/File.i
| A	src/lib/Library.i
| M	src/lib/List.i
| M	src/lib/Mathematics.i
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.h
| M	src/lib/Trie.i
| M	src/lib/Version.i
| M	src/lib/common.h
| M	src/lib/io.i
|  
* commit 918290d7abf9363f8a082cedf806419b3355745c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Dec 19 17:41:19 2006 +0000
| 
|     + changed typecode error message to be part of a standard python 'TypeError' exception
| 
| M	src/lib/numpy.i
|  
* commit 2259cb96c4cd0bcba09861317ef6dadcc2f24554
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 17:06:23 2006 +0000
| 
|     + R swig support ( --enable-swig-R)
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/distance/Distance.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.h
| M	src/lib/common.i
| M	src/lib/numpy.i
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
| M	src/structure/Plif.i
| M	src/structure/Structure.i
|  
* commit 9fe9c87638427b2409ca3e8530cf30ffad6f057b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:58:30 2006 +0000
| 
|     at least all interfaces DO compile now
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.h
| M	src/lib/io.cpp
|  
* commit da1db6ef1226cc20d2cf878e5bb7ec48851e14a2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:30:21 2006 +0000
| 
|     gpdt compile fixes
|     octave string/char features fix
| 
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/guilib/GUIOctave.cpp
|  
* commit 3e6ca259d3f051565463a5c0ef7713559778689b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 13:04:36 2006 +0000
| 
|     remove cplex related shadows...
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/numpy.i
| M	src/regression/svr/SVR_light.cpp
|  
* commit 071d986fea41795d912c2423db27515f0af4fa33
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 12:35:03 2006 +0000
| 
|     +fix returning matrices #%#!#@? !!fortran order!!
| 
| M	src/classifier/svm/SVM.h
| M	src/lib/numpy.i
|  
* commit af748ef093b9346bd7d3429efd5f1226356018b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 11:04:19 2006 +0000
| 
|     +don't include any of the gui/* guilib/* classes when building with HAVE_SWIG
|     (#ifndef SWIG ... #endif)
| 
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIDistance.cpp
| M	src/guilib/GUIDistance.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
|  
* commit c4a9dea278b7cb75ff50177f9d30215c2270f8df
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 10:37:21 2006 +0000
| 
|     + do not allow type conversion
|     + print out errors on wrong types
| 
| M	src/lib/numpy.i
| M	src/structure/Plif.i
| M	src/structure/PlifBase.h
|  
* commit f66746dbb72e6a71b5a0482a543d3e379f5ada3d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 19 09:59:55 2006 +0000
| 
|     +configure now enables further warnings: -Wall -Wformat -Wshadow
|     +removed rest of the shadow warnings
|     						- !WE NEED A CLEAR POLICY ON NAMING VARIABLES!
|     +introduced new hidden bugs
|     +Plifbase swigify
|     
|     NOTE: swig generates a bazillion of shadowed code, some is due to us
|     (naming in function headers), a lot is not
| 
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM_oneclass.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/ssl.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/FKFeatures.cpp
| M	src/features/RealFeatures.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/numpy.i
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ChildTable.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/preproc/PruneVarSubMean.cpp
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| M	src/structure/Plif.cpp
| A	src/structure/PlifBase.i
| M	src/structure/Structure.i
|  
* commit 96db54a85e5579d0feb242866f2699b6c4ad24b8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 23:55:19 2006 +0000
| 
|     minor fixes.
| 
| M	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
|  
* commit 575d0696125dec9ec5ee45ea214be677f0d5e347
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 18:34:51 2006 +0000
| 
|     extension to codon-based content sensors.
|     few fixes and cleanups.
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 1919750ed4c77e4b5cd965035197fe820244b8a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 16:57:20 2006 +0000
| 
| M	src/lib/numpy.i
|  
* commit d231ee3e8ce600c3e53a253e23ea9108423d7df1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 15:14:00 2006 +0000
| 
| M	src/classifier/svm/SVM.h
|  
* commit 31cb67683fcfe8dbf059ffc80d84d1d0bcbcafc9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 15:09:50 2006 +0000
| 
|     debugging...
| 
| M	src/classifier/svm/SVM.h
|  
* commit fd836f543eee2121d968dbbfe925b8bcfef62541
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:55:22 2006 +0000
| 
|     cleanup
| 
| M	src/structure/Plif.cpp
|  
* commit eb4f0cc53a9bb491171dca65e205d2730458ee97
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:49:33 2006 +0000
| 
|     few more bugfixes in PlifArray and cleanup in GUIMatlab
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynamicArray.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
|  
* commit 4e42ee3faafbf9f0fed6b56c41ff88584aa8b124
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 13:31:00 2006 +0000
| 
|     Many, many minor changes to avoid shadowing, which can easily lead (and has led) to mistakes.
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/distance/Distance.cpp
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/features/Labels.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/gui/Matlab.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/lib/DynamicArray.h
| M	src/lib/List.h
| M	src/lib/Trie.h
| M	src/preproc/PCACut.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| M	src/structure/PlifArray.cpp
| M	src/structure/PlifArray.h
|  
* commit 62f33ac8e66048f9119d00372623483a6add6de2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 11:07:26 2006 +0000
| 
| M	src/lib/Mathematics.h
|  
* commit 3b9caad7068b33182fc940423a03a2bd5f290289
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 18 11:06:28 2006 +0000
| 
|     fix floor/ceil/round
| 
| M	src/lib/Mathematics.h
|  
* commit 521b4f432b7492487ffdc27626d9446b6336bcae
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 10:20:19 2006 +0000
| 
|     ceil hangs on amd64 ... do you know a fix?
|     (I avoid using it).
| 
| M	src/lib/Mathematics.h
|  
* commit 6bd9dbd59230c521563e3d92556c1fb9e7dcfb82
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 09:10:31 2006 +0000
| 
|     use DynamicArray instead of Array.
| 
| M	src/structure/PlifArray.cpp
|  
* commit 65e78b462043d4dc0b458d4d0d16e1bc8ff7e13c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 09:09:48 2006 +0000
| 
|     fixes in append_element() and element().
| 
| M	src/lib/DynamicArray.h
|  
* commit fbb4c6ddec267afa137e2293d06bf7e4a8ab4f87
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:45:06 2006 +0000
| 
|     FibHeap cleanup.
| 
| M	src/structure/DynProg.cpp
|  
* commit e1aa674a9a5614a482df6a2bbf631b0a37fecb3f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:34:40 2006 +0000
| 
|     removed uneeded feature.
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 019fd98041b163ebf02635e58968c718c204278e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Dec 18 07:20:29 2006 +0000
| 
|     missing file.
| 
| A	src/structure/PlifBase.h
|  
* commit 0c0b1531ade1855de9bf99531db8061e3ab7ec46
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 23:04:34 2006 +0000
| 
|     improved the special case of only one plif for a transition.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/PlifArray.h
|  
* commit b47e128daed68b13c928f55e159ab9e2d2501851
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 22:59:35 2006 +0000
| 
|     Many changes related to Plifs:
|     - removed field next_pen in Plif
|     - created pure virtual parent class PlifBase
|     - created an container class PlifArray that can store several plifs
|     - changed the matlab interface:
|     	* plif structure ignores the next_pen field
|     	* the penalties matrix can be three dimensional now to support many plifs
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
| A	src/structure/PlifArray.cpp
| A	src/structure/PlifArray.h
|  
* commit 63ef1195e1f610d35616bb000b1bf2957f8a5db7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:55:45 2006 +0000
| 
|     tested version of the WeightedDegree kernel with shifts that allows to use conservation features.
|     use set_weights to set weights of the size seq_length x num_examples.
|     These weights have to be set for training *and* test examples. If not initialized, then 1 is used.
| 
| A	matlab/examples/test_wdshiftphyl_kernel.m
| M	python/examples/wd_kernel.py
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/Trie.h
|  
* commit a237b6127c422d58e9bec743a9fe5ce00c5e0a53
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:46:34 2006 +0000
| 
|     more of the same kind ...
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 134e7c7605506e56f4faf56482ab0a80a2994a44
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:39:47 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 4c3fa4e302b3f13407770ee6a042191b99676407
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 19:38:32 2006 +0000
| 
|     fixed a bug that affected the correct usage of the position weights in
|     combination with shifts.
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 1ea5536806f914f155d1d6bb6e1adc7c0001ec6f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Dec 17 09:57:03 2006 +0000
| 
|     integrated phyl kernel in matlab interface.
|     Still untested.
| 
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/common.h
|  
* commit 413b91bacd9a44277652dbbfcbd5bdedb718e01b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:56:48 2006 +0000
| 
|     experimental code for using conservation weights in the WD shift kernel.
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| A	src/kernel/WeightedDegreePositionPhylCharKernel.cpp
| A	src/kernel/WeightedDegreePositionPhylCharKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/common.h
|  
* commit 58e938df9e0b6c0313019018f95a4464bb131ec2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:01:10 2006 +0000
| 
|     cleanup
| 
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit a4cce4cdbb499717e715d9cd3d775849617947d1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 16 17:00:57 2006 +0000
| 
|     cleanup
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 8cf041bd2d85343a6eda89743eddfea5cbd68b93
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 14:27:06 2006 +0000
| 
|     +typemap fix
|     +debugging..
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/DynProg.i
|  
* commit 53761c31932489db1570d80b51efd6b4f7c32bed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:52:05 2006 +0000
| 
|     cleanups
| 
| M	src/structure/DynProg.h
|  
* commit 464c86874dbb8a677003f6ef8601361687087fad
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:11:24 2006 +0000
| 
|     die on non linux arch / print err msg
| 
| M	src/configure
|  
* commit ac0c343e4812fdfc21ac75518e45e982f5671eda
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 11:08:42 2006 +0000
| 
|     +put -lcplex also in POSTLINKFLAGS
| 
| M	src/configure
|  
* commit 5bde4b1e38cdaeb741dab4823b2b1e190225e896
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:59:35 2006 +0000
| 
|     make cplex autodetection work on x86 & x86_64 ... all the others need to specify --includes --libs
| 
| M	src/configure
|  
* commit 2f5a9515d63f1e643dd295cca944944c698256e9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:34:38 2006 +0000
| 
|     remove obsolete file
| 
| D	src/kernel/WDCharKernel.i
|  
* commit 5b281678938a75399b3967572fa7916c0fc858e0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 15 10:33:36 2006 +0000
| 
|     +cplex autodetection
| 
| M	src/configure
|  
* commit 39f1a5f01efe2b25b899a48932caa308fd99a739
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 13:59:05 2006 +0000
| 
|     +document --destdir option
| 
| M	src/configure
|  
* commit 3d03ae566011f97066a4b2db5b1b2acf86281638
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 13:36:18 2006 +0000
| 
|     +configure fixes
|     +ceil,floor
|     +plif limits are now real valued
| 
| M	src/configure
| M	src/lib/Mathematics.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 36731756a3772382480427c7b2ca24a1b1e252f9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Dec 14 07:19:12 2006 +0000
| 
|     + get_penalty access funcitons
| 
| M	src/structure/Plif.h
|  
* commit 767c151eb2f5d0976f7823cb0675e8ce77ed312d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 13 21:53:19 2006 +0000
| 
| M	R/Makefile
|  
* commit a0d880615b3f6e2f9a1e9168dea20fa589934cf2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Dec 13 21:48:44 2006 +0000
| 
|     +debian target for R
|     +add licensing note for Msuffsort
| 
| M	R/Makefile
| M	src/LICENSE
|  
* commit 0bcc1480e6b28f884b153cb15350c10c597a3d8f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 12 10:58:21 2006 +0000
| 
|     remove unused fibheap file (which has unclear license)
| 
| D	src/lib/fibheap.cpp
| D	src/lib/fibheap.h
| M	src/structure/DynProg.cpp
|  
* commit 0111059e4fc76741adb1e434c46f5331edf2bd14
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 12 08:40:28 2006 +0000
| 
|     +autodetection for -fPIC/-fpic for R frontend
|     +./configure --enable-swig --enable-python is now ./configure --enable-swig-python
|     (just one configure option per interface for consistency)
|     +top level makefile is removed from distribution
|     +added SVMLin source code
| 
| M	Makefile
| M	src/CONTRIBUTIONS
| M	src/Makefile
| M	src/classifier/Classifier.i
| A	src/classifier/svm/SVMLin.cpp
| A	src/classifier/svm/SVMLin.h
| A	src/classifier/svm/SVMLin.i
| A	src/classifier/svm/ssl.cpp
| A	src/classifier/svm/ssl.h
| M	src/configure
| M	src/lib/common.h
|  
* commit ea11d9f0e71dc6e325d3cf7016f0f83dff4901d4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 12:03:53 2006 +0000
| 
|     minor fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit 6f40c20a643bcf6aaeece85aa981d87d6cdb4a7d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 11:09:16 2006 +0000
| 
|     many bug fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
|  
* commit caa31f5c7d79965ae98862332a6b3c5c1ac9c1e1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 08:13:43 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 2a47e254ef7f35bb9d2a2cf30eefa7efdb605827
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 08:00:17 2006 +0000
| 
|     many fixes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
|  
* commit e138ef957cf7b2d56cc1d8b6b4e5ed800d87628c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 04:39:51 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 3978ca3839a02c111b7ed074f8ae304e3bfec167
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Dec 6 04:31:34 2006 +0000
| 
|     extension for Dynamic programming with loss relative to another segmentation.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 5906c4c81a5dd22f2a745110adf11c926efcf6d4
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 5 20:50:21 2006 +0000
| 
|     minor bug fixed
|     G
| 
| M	src/structure/Plif.cpp
|  
* commit d78733a5ecdc74ed87a5d56298224cffd43b9210
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 20:08:36 2006 +0000
| 
| M	matlab/examples/hmm.m
|  
* commit fb8bf65409f030b7b52245932242c6a4ae9c7fbb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 17:58:12 2006 +0000
| 
| M	src/ChangeLog
|  
* commit da09401180f60ffaa8db1c56f31822e03c343db6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 17:56:36 2006 +0000
| 
|     preparing release 0.2.1
| 
| M	Makefile
| M	R/sg/DESCRIPTION
| M	doc/manual/Makefile
| M	matlab/examples/svm_classification.m
| M	python/examples/multiple_svms.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/testsuite.py
| M	python/examples/wd_kernel2.py
| M	src/classifier/svm/SVM.i
| A	src/kernel/SpectrumKernel.i
| A	src/structure/DynProg.i
| A	src/structure/Plif.i
| A	src/structure/Structure.i
|  
* commit 90de1d0c767fcf00b291ba81154fe266536f2d60
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Dec 5 01:56:59 2006 +0000
| 
|     +fix matlab build/compile for macosx (intel and ppc)
| 
| M	src/configure
| M	src/gui/Matlab.cpp
|  
* commit 6f9bb8a8ad5c39e4397e95058b5737745df4c213
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Dec 5 01:18:00 2006 +0000
| 
| M	src/structure/Plif.cpp
|  
* commit 960f1a3893873b908e09d1c01284499b32d792c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Dec 4 22:13:55 2006 +0000
| 
|     fix makefile for make 3.80
| 
| M	src/Makefile
|  
* commit 5befb8ea3ccacae60df8f44757544381bb07f06a
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 12:55:38 2006 +0000
| 
|     removed binary files
|  
* commit e8e1b2cd614424de071e58e1c8a6b7bb29c3969c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 12:55:23 2006 +0000
| 
|     added forgotten files
| 
| A	src/exceptions/AlphabetException.cpp
| A	src/exceptions/AlphabetException.h
| A	src/exceptions/ClassifierException.cpp
| A	src/exceptions/FeatureException.cpp
| A	src/exceptions/KernelException.cpp
| A	src/exceptions/LabelException.cpp
| A	src/exceptions/PluginException.cpp
| A	src/exceptions/PluginException.h
| A	src/exceptions/SVMException.cpp
|  
* commit 3286fdca9178bc2ca46bba39abf6213eef18a624
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Dec 4 11:01:44 2006 +0000
| 
|     + added variable argument support for Exception constructors
|     + Wrapped all CIO(ERROR,.. -> Exception with
|        #ifdef HAVE_PYTHON
| 
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/exceptions/ClassifierException.h
| M	src/exceptions/Exception.h
| M	src/exceptions/FeatureException.h
| M	src/exceptions/KernelException.h
| M	src/exceptions/LabelException.h
| M	src/exceptions/SVMException.h
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SparseKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/preproc/PreProc.h
|  
* commit fcdfdcbf9b3705478db9ce221415c4a16dd7f6c0
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sun Dec 3 12:20:44 2006 +0000
| 
|     some refactoring
| 
| M	src/Makefile
|  
* commit 9d36959db75eff71a0a9e88c77f21f3dcff1ba75
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sun Dec 3 11:19:48 2006 +0000
| 
|     - make it possible to build the package without SVMlight
|     - .version.sh:
|       - don't call 'svn info' anymore
|       - use 'Id' keyword instead
|       - rationale: it should work in every source tree, not only in svn working dirs
| 
| M	Makefile
| M	R/Makefile
| M	src/.version.sh
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUISVM.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 9ff5b5f1008f512f090c7ee1a3db2226806ba51c
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 22:22:04 2006 +0000
| 
|     fix and beautify R build
| 
| M	R/Makefile
| A	R/Makefile.sed
| M	src/LICENSE.SVMlight
|  
* commit 8dbf84785df5e7a38f8d4cad1b9f5e06db10ed30
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 20:25:59 2006 +0000
| 
|     remove svn:executable from a file without shebang line
| 
| M	octave/examples/spec_kernel.m
|  
* commit 7074224ad336764270564e74a8ef62180b5d025c
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 19:29:30 2006 +0000
| 
|     fixed installation of non swig python module
| 
| M	src/Makefile
| M	src/configure
|  
* commit c83b3f98b58ee2242575285036c1fa5b14875276
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 18:29:08 2006 +0000
| 
|     fix permissions of installed python files
| 
| M	src/Makefile
|  
* commit ec22551ea9cae55ecc70cf23b461176bce90e1f7
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:20:33 2006 +0000
| 
|     more refactoring
| 
| M	src/Makefile
|  
* commit 2ed4e1a4f45e07e5d658f7e967095dd46a1a7f7a
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:13:29 2006 +0000
| 
|     - a little bit refactoring
| 
| M	Makefile
|  
* commit 1678f5af9b1b3819694cda68b73bee30d65dd672
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 17:01:42 2006 +0000
| 
|     - src/.version.sh: make sure we use a sane locale
|     - src/Makefile: simplified
|     - Makefile: bugfix + use svn in release target
| 
| M	Makefile
| M	src/.version.sh
| M	src/Makefile
|  
* commit 706c8999cd9e876d8189fb3483aa71d41d17c61a
| Author: Torsten Werner <mail.twerner@googlemail.com>
| Date:   Sat Dec 2 16:20:45 2006 +0000
| 
|     make top level Makefile
|     - more flexible
|     - more readable
|     - less buggy (fixed the find command)
| 
| M	Makefile
|  
* commit f322dd1c9c7e5dfa3ca6511fc3ba13786434b444
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Dec 2 09:41:00 2006 +0000
| 
|     little extension...
|     G
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 26041b4e2186a7f3a6b01deeb010ab923179f322
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Dec 1 14:17:21 2006 +0000
| 
|     +make clean now also kills *wrap.h
|     +more poster pics
| 
| M	doc/doxygen/Doxyfile
| M	src/Makefile
|  
* commit 9fb4a7941f84c5fe756435bf90b09d6a1ec2c266
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 15:44:27 2006 +0000
| 
| M	python/examples/svm_classificaton.py
|  
* commit 17fb94b481700cae6e24b277c26984175d32c49c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 15:30:13 2006 +0000
| 
|     fix string features in R
| 
| M	src/guilib/GUIR.cpp
|  
* commit bcbf39c26204318f0479d0d364d21bf9acd1e121
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 14:53:11 2006 +0000
| 
|     + Moved exceptions to own folder.
|     TODO
|     + implement variable arguments stuff using streams
| 
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.h
| A	src/exceptions/ClassifierException.h
| A	src/exceptions/Exception.h
| A	src/exceptions/FeatureException.h
| A	src/exceptions/KernelException.h
| A	src/exceptions/LabelException.h
| A	src/exceptions/SVMException.h
| M	src/features/Features.h
| M	src/features/Labels.h
| M	src/kernel/Kernel.h
|  
* commit 82d2788176d1d7794faf739c971d79352898dbe8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 12:24:50 2006 +0000
| 
|     + added PluginException, SVMException and ClassifierException
|     + all python test cases are still running
| 
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.h
| M	src/classifier/LDA.cpp
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
|  
* commit afe27414dc7c1d4dabaac6539e755fa3b09871c0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 12:09:29 2006 +0000
| 
|     +updated makefile/confiugre for R
| 
| M	src/Makefile
| M	src/configure
|  
* commit 0094cb4002b07c3d78576c2e71c96c9901808d59
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 30 12:09:00 2006 +0000
| 
|     +now
|     	make package
|     		builds a R package
|     	make install
|     		directly installs from the sg dir (w/o creating a additional package)
| 
| M	R/Makefile
| D	R/configure
| D	R/sg/inst/doc/sg.pdf
|  
* commit fa3fd6713423559d8d02e5e12585cfdad482fdda
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 11:32:19 2006 +0000
| 
|     + Added classes LabelException, FeatureException and AlphabetException.
|     + Replaced all CIO::message(ERROR.. by the corresponding Exception.
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
|  
* commit 69400c7555ab04a8d27120db5e9190e19e02dd75
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 30 10:53:27 2006 +0000
| 
|     + added class KernelException to Kernel.h
|     + modified whole kernel directory to support KernelException instead of using CIO::message(ERROR..
|       all other CIO::messages are untouched.
|     TODO:
|     + generate FeatureException and ClassifierException and modify files according the above rule.
| 
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SparseKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordMatchKernel.cpp
|  
* commit e952bc1e823cb2f772f1cccb60f1a463af571123
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 20:27:01 2006 +0000
| 
|     +octave install dir fixes
| 
| M	src/Makefile
| M	src/configure
|  
* commit 0bb132716ae2d19158d4ae043fa2f8dcf0a7dbaa
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 19:17:32 2006 +0000
| 
|     +integrated torsten werners rpath/destdir configure patches
| 
| M	src/Makefile
| M	src/classifier/LDA.cpp
| M	src/configure
|  
* commit a69f6a8c07288cbabc187cb7b451fc367ceba483
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 12:04:59 2006 +0000
| 
|     +some asserts in Plif
|     +some work on lda
| 
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/lib/Mathematics.cpp
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 0b321a89ee8a2f3ce8816b004fe50ab7d8615d17
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 29 10:40:53 2006 +0000
| 
|     fix configure typo for lapack
| 
| M	src/configure
| M	src/structure/Plif.h
|  
* commit e792b957256a1a37591cd694230d1920effdd680
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 19:27:53 2006 +0000
| 
|     nicer printing...
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 5b8fbb7494b60f79375d6191fffc6543a30b458f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 17:44:19 2006 +0000
| 
|     bug fixed.
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 72e1c7f70e7aa0ab03217d69f661d91afd45e50a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 28 15:44:30 2006 +0000
| 
|     +plif constructor has now has a len argument
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 0af374c789f4e7a25402357fdb546cef25e99ad7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 28 15:35:38 2006 +0000
| 
|     fixed a bug in Plif cache initialization.
|     other minor changes.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array2.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
|  
* commit c09b4adf09d85c9fc023588d1af89da350e11536
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 28 14:17:35 2006 +0000
| 
|     +compile fixes for win32/cygwin (now matlab/R work at least partially)
|     +update install guide
| 
| M	doc/Makefile
| M	src/INSTALL
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| M	src/distance/Distance.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/structure/Plif.h
|  
* commit fc3b62be07834b8884452b7bdaa6ed85f4020b75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 26 15:08:56 2006 +0000
| 
|     +many fixes...
| 
| M	python/examples/svm_classificaton.py
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/classifier/Classifier.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
|  
* commit 8e70fca8dc6f6c9a5c11ba0f8cd502fcda450829
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 22:39:54 2006 +0000
| 
|     allow configure to be run from a path outside of shogun
| 
| M	src/configure
|  
* commit f9a89e40ddf560fef87700972efacf14b9d40b48
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 22:13:28 2006 +0000
| 
|     make shogun compile without svmlight
|     
|     !!!! NEVER EVER UNCOMMENT THE CHECKS FOR USE_SVMLIGHT !!!
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
|  
* commit 6b4d6bec390e5f6c74e9d9ac69283671420abfc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 15:09:02 2006 +0000
| 
|     +add get_alphas
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
|  
* commit 609bc9cb85aa62eb300a63025e9f3c43df93cb5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 24 08:20:46 2006 +0000
| 
|     SVM should be under Classifier:
|     
|     so: from shogun.Classifier import SVM
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
|  
* commit 9be5f3a73796be062c195f5a2199de651d17e8f6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 23 13:43:16 2006 +0000
| 
|     a few mem leaks fixed..
|     
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit 2de3fec18caa7e6781788d8052a9c4e82348860e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 23 13:24:09 2006 +0000
| 
|     +cygwin path magic
| 
| M	src/configure
|  
* commit 02a3f47b299aeda216b5016a0ee624259762a8b3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 23 10:35:50 2006 +0000
| 
|     minor fixes/extensions in structure stuff.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 5c2cc5a9ff0fc9e1af2d1f6a2d4117bc2f2fde1c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 21 16:09:49 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit acc2b3ac0744e7ae63e87bae0cee3444b5147f4c
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 21 15:46:54 2006 +0000
| 
|     quite a few hacks...
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit a5945d39574907868f098b536db9ad39906c2d25
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 20 22:09:37 2006 +0000
| 
|     towards cygwin + matlab.
| 
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/configure
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/GUI.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Mathematics.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/io.cpp
| M	src/lib/suffixarray/BoundedRangeWeight.cpp
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ConstantWeight.cpp
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ExpDecayWeight.cpp
| M	src/lib/suffixarray/KSpectrumWeight.cpp
| M	src/lib/suffixarray/LCP.cpp
| M	src/lib/suffixarray/LCP.h
| M	src/lib/suffixarray/W_msufsort.cpp
|  
* commit 3aa9becb5b60a32f5b57d56813275174b884ab43
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 20 16:39:27 2006 +0000
| 
|     DynProg derivatives work now in matlab.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Array.h
| M	src/lib/Array3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 413f625aee97a4c5a6c8196d9a42238d9a3f20d5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 18 15:50:17 2006 +0000
| 
|     + use die "error message" when something is missing + some matlab/win32 checks
| 
| M	src/configure
|  
* commit 37549dafa228d522e33e4a7dd613e7cbd977ac66
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 16 13:20:33 2006 +0000
| 
|     + a much much cooler python example with smoothed output
|     and a working colorbar :)
| 
| M	python/examples/svm_classificaton.py
|  
* commit 24e07050a1395749a1ec2f778d0c81ec2c3dbe52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Nov 16 13:00:04 2006 +0000
| 
|     +fix configure for R interface on osx
|     +updated readme/installation instructions, as I now **trommelwirbel**
|     managed to build all the interfaces (well lets ignore matlab) on OSX too.
|     +this *should* make the dynamic array resize function work with zero size again.
|     +configure now checks for lapack-3 first, as this is indeed different
|     from standard lapack (it uses a completely different api - and we need exactly
|     that one) I also enhanced the lapack .c compile test in configure.
| 
| M	src/INSTALL
| M	src/Makefile
| M	src/README
| M	src/configure
| M	src/lib/DynamicArray.h
|  
* commit c63192bbccd4380ed8f82e607e8f5cbdae0954f3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 15 20:27:16 2006 +0000
| 
|     increased to max_order=12.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 80d73a5187de77b8e8b9344026f3eb223810fa6a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 15 20:07:19 2006 +0000
| 
|     extended max_order for visualization from 8 to 10.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 95d8c1c6a7a70befb015f0b1c6cc200be0805e03
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Nov 15 17:38:48 2006 +0000
| 
|     + addded support for "numpy_matrix = svm.get_alphas()"
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM.i
|  
* commit d567ffeeb610890cd73c3d76557ec08dfad66ecc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 15 15:58:13 2006 +0000
| 
|     tiny fixes
| 
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python/examples/testsuite.py
|  
* commit 6ffb1a8977f6a92bd31de6f01ec8d56351e34986
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 15 14:42:20 2006 +0000
| 
|     configure don't use lapack-3
| 
| M	src/configure
| M	src/guilib/GUIR.cpp
|  
* commit ba2b1600d8e90d8de0d167460acdd68eba132ae5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 14 23:33:51 2006 +0000
| 
|     +fix bug in set_features. the feature object should be created *AFTER* the alphabet
|     has a fully initialized histogram
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit 4fa2a9829eca103360d99d2e51955af1af3a774d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Nov 14 13:16:22 2006 +0000
| 
|     implemented interface for best_path_trans_deriv.
|     Untested.
|     G
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.h
|  
* commit 3d60c9e407054c3884e2c7fe2f468d2dc368f567
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 16:43:01 2006 +0000
| 
|     this should make wd / wds kernel work for vanilla+linadd+batch kernel computation
|     
|     a) single threaded in svm training + testing
|     b) multi threaded in svm training + testing (including reactive_inactive_examples)
|     
|     I've found some bugs in combined kernel / batch computation/linadd ...
|     so be cautious with that... though it should work
|     
|     this of course helps all kernels in testing too and speed up other linadd enabled
|     kernels in svm training / testing too
|     
|     yay :-)
| 
| A	matlab/examples/test_wd_wds_parallel.m
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit c3795d4e95ec935463cb80e80e283440c8b971c6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Nov 12 14:24:41 2006 +0000
| 
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/wd_kernel.py
|  
* commit c4441df7b74fa09c9d0d83de76ab0de379369e47
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 12:38:12 2006 +0000
| 
|     THIS IS ALL UNTESTED AND PROBABLY BROKEN CODE
|     
|     +this should parallelize:
|     
|     SVM evaluation for:
|     	batch computation (WD kernel, WDS kernel, combined kernel)
|     	linadd / vanilla kernel computation
|     
|     SVM training for
|     	batch computation
|     	linadd / vanilla kernel computation
|     
|     THIS IS ALL UNTESTED AND PROBABLY BROKEN CODE
|     
|     I probably need help testing it...
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 60ce0739167f7b2d1dc52ed04d86cfbbea9b77ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 12 10:44:20 2006 +0000
| 
|     experimental: parallelized compute_batch
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit ac15e0612aaeeb8a9c14ba295d169cc450651689
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 20:41:06 2006 +0000
| 
|     + batch computation now needs an index array (enumeration of vectors for which output is to be computed)
|     + fix serious bug (which probably (not yet) never ever occured): batch computation + combined kernel assigned
|      the weight of the combined kernel not the subkernel
|     + stuff is only tested for wds kernel (same result as before + valgrind verified) but I am quite confident
|     this works for wd kernel (trivially) too / combined kernel untested same applies here
|     + fixed a valgrind error in WD_scoring
| 
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit ce94b6a32aa0f8ec57610301d74ebd4abd5c7755
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 18:07:03 2006 +0000
| 
|     +print out whether batch comput is on / on svm training
|     +fix make clean
|     +fix batch computation on reactivate_inactive_examples (should work,
|       i.e. in testing got same results
|     		a) with linadd on, batch off
|     		b) linadd off (batch on/off)
|     		c) linadd on, batch on
| 
| M	src/Makefile
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUISVM.cpp
|  
* commit b8ce1872171a49f541b237a2325cc8cdff747399
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Nov 10 17:43:20 2006 +0000
| 
|     Fixed a problem with "compute_scoring". It previously produced different results on WDS and WD (actually the implementation was different). I copied the code from WDS... (not so nice). Alex is currently testing it.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 412be2486c9648e4c40b8428de18bd8ea1bce7a6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 17:10:29 2006 +0000
| 
|     call batchcomput only if num_suppvec >0 / free temporary arrays afterwards
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 83e1c12d1a07adca7b472503636cce491029a64c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 17:04:03 2006 +0000
| 
|     use cut -c 1 instead of head -c 1 (non posix...)
| 
| M	src/configure
|  
* commit 580144471fe2a4d9c355b4cf9554730e85c3ccbc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 10 07:08:42 2006 +0000
| 
|     + add a lot more build instructions in INSTALL
|     + fix configure etc to make python, octave, python/swig work on windows/cygwin
| 
| M	src/.generate_link_dependencies.py
| M	src/INSTALL
| M	src/Makefile
| M	src/configure
|  
* commit ced70524cdbc5d19be5ef984d5c2d1b03fd43142
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Nov 9 07:05:12 2006 +0000
| 
|     Implemented batch computation in svm_light inactive example reactivation.
|     UNTESTED. Soeren.. please have a look at it and try it.
|     Its still not optimal, as it computes the output for all examples...
|     
|     Gu
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 149473de22c087084018d116d220e2d53afc570c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 8 17:58:43 2006 +0000
| 
|     +fix == syntax error in configure
|     +ignore configure- files on make
|     +print test error in wd kernel py example
| 
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/configure
|  
* commit 3f455b78d18f929b177f0ff9e92d36d85b66fedd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 8 10:43:37 2006 +0000
| 
| M	python/examples/wd_kernel.py
|  
* commit cc58f5bf8e5e67372111bae5ae200bb6b665fdc6
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Nov 7 18:17:59 2006 +0000
| 
|     + added module for io
|     + setting of loglevels is now possible
| 
| M	src/lib/io.h
| M	src/lib/io.i
|  
* commit fdc2460759fdbc99aa4400aa06b50167e2715565
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Nov 7 07:48:13 2006 +0000
| 
|     matlab devel check only when matlab is on
| 
| M	src/configure
|  
* commit b9dc1b49007cc98d17bf9f87566456a5c82a4b82
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 22:01:15 2006 +0000
| 
|     matlab autodetection for cygwin
| 
| M	src/configure
|  
* commit 5c6d900f96458e9f770cf11704878ff523add521
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:52:58 2006 +0000
| 
|     now matlab should be autodetected
| 
| M	src/configure
|  
* commit 9c97f854093a92fdc503a254a13472bf0c2151e6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:29:53 2006 +0000
| 
|     matlab autodetection
| 
| M	src/configure
|  
* commit ea8ca6150c2be893a65382ff51002c208a9a4819
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 21:21:50 2006 +0000
| 
|     configure+matlab autodetection
| 
| M	src/configure
|  
* commit 39568afc6526b197b1857321eb71a80babae4142
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:52:19 2006 +0000
| 
|     + added Sigmoid and Chi2 kernel interfaces
| 
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SigmoidKernel.i
|  
* commit 109171ba27d9c780245331a074497c6cf04f6dc1
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:51:49 2006 +0000
| 
|     added Sigmoid and Chi2 Kernels to test cases
| 
| M	python/examples/testsuite.py
|  
* commit 86167d19aa1f0ea39e389ebc3fba30da496c0f99
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 16:16:21 2006 +0000
| 
|     + added a testsuite for the shogun kernels
| 
| M	python/examples/testsuite.py
|  
* commit 8000898b853f9ae3c4e5fe735f5335fa6f8c1df2
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 15:55:42 2006 +0000
| 
|     + added Constructors for RealFeatures
| 
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearKernel.i
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyKernel.i
|  
* commit 175a24ad2b2c098f8f4d78d63a6261c8a977e424
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 13:03:46 2006 +0000
| 
|     + added framework for testsuite for the kernels
|     + modified interfaces for Poly and Linear Kernel
|     + added doctstring support via the %feature("autodoc", "0")
|     directive
|     TODO
|     + write some test cases for Poly, Gaussian and Linear
| 
| A	python/examples/testsuite.py
| A	python/examples/ut.py
| M	src/kernel/Kernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/PolyKernel.i
|  
* commit 34780c0516b20ba63a5476ddda83a3ae9c7af949
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Nov 6 11:48:41 2006 +0000
| 
|     + added AUCKernel
| 
| M	src/kernel/AUCKernel.i
| M	src/kernel/Kernel.i
|  
* commit 00bc4ebdc29353cee75bfd3de212073142a2bdc1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 09:44:23 2006 +0000
| 
|     try to be smart and convert ~ into $HOME
| 
| M	src/configure
|  
* commit 37a68142e8d1bc4557a3bfccb44bd6341fa0d4eb
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Nov 6 09:17:47 2006 +0000
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/structure/Plif.h
|  
* commit 3e422ed138f406471b0d07621d60f9501bfe3308
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Nov 6 09:13:36 2006 +0000
| 
|     exclusive or for --enable-matlab --enable-python etc
| 
| M	src/configure
|  
* commit 4957e897f4c54874b4cf7432ba3b6cdb549dad80
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 12:25:13 2006 +0000
| 
|     +Distance .i files
| 
| A	src/distance/Distance.i
| A	src/distance/DistanceMachine.i
|  
* commit 4f88e8f643933d5d5550a16e8e1f463f7ffebe51
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 12:08:03 2006 +0000
| 
|     this fixes linadd/batch computation w/ WD kernel
| 
| M	python/examples/wd_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 1eedf077d15fe7e5f8390a03de5e19e88c619c61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Nov 5 08:00:24 2006 +0000
| 
|     ok this is what the what the wd kernel python interface now looks like:
|     
|     wdk = WeightedDegreeCharKernel(trainfeat, trainfeat, degree)
|     
|     or:
|     
|     weights = arange(1,degree+1,dtype=double)[::-1]/sum(arange(1,degree+1,dtype=double))
|     wdk = WeightedDegreeCharKernel(trainfeat, trainfeat, degree, weights=weights)
|     
|     
|     see:
|     python/examples/test_wdk.py
| 
| M	python/examples/multiple_svms.py
| M	python/examples/multiple_svms_matplotlib.py
| M	python/examples/numpy_svm.py
| M	python/examples/numpy_svm_matplotlib.py
| M	python/examples/test_wdk.py
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 4f7b5d4c62aa45519ef62b4f9343b3ceb8458764
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Nov 4 13:51:00 2006 +0000
| 
|     w/o batch computation/kernel optimization the py wd kernel
|     is now equiv to the oct/matlab versions
| 
| A	python/examples/test_wdk.py
| M	python/examples/wd_kernel.py
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
|  
* commit 273c1d5585b7b017a6fee5bdb7c15c1d0861e05d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Nov 3 19:14:08 2006 +0000
| 
|     make it compile again ...
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/kernel/KernelMachine.i
|  
* commit 470627bfd902887d0835b980620c5685d1514f97
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Nov 3 14:48:45 2006 +0000
| 
|     fixed some bugs
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/kernel/KernelMachine.i
|  
* commit 9c31b2667c9beb559f77d45ccd56f4c2e003c2fd
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Nov 2 15:40:15 2006 +0000
| 
|     + basic hmm stuff is working under python
|     + need more tests
| 
| A	src/distributions/hmm/HMM.i
|  
* commit c34db1e4193bed0b65586f4dbb3c25a14aaca599
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 21:25:16 2006 +0000
| 
|     compile-error fixed.
|     G
| 
| M	src/structure/DynProg.h
|  
* commit 278acc5d811831d355a71d3cb6c3afc21025d935
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 1 20:53:43 2006 +0000
| 
|     remove the structure stuff from guioctave to make it compile again -> we need a build bot!!!
| 
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit 257dddd8f31294f68d29860b8a7ddab10a8cc106
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 18:46:45 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 6ea9e80020ccb2efb895f54f25d53870acdf68ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 18:34:53 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit f09f323da769a09692b792b6781bfc352ceceac0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Nov 1 15:29:06 2006 +0000
| 
|     trying to fix the wd kernel... / python interf. for struct stuff
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.h
| M	src/classifier/KNN.i
| M	src/classifier/svm/SVM.i
| M	src/configure
| M	src/distance/Distance.cpp
| M	src/distance/Distance.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/KernelMachine.i
| D	src/kernel/WDCharKernel.cpp
| D	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/lib/fibheap.cpp
| M	src/structure/DynProg.h
| M	src/structure/Plif.cpp
|  
* commit 5ca0990d5e3c31de553070652ace073a9b0addae
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 00:30:20 2006 +0000
| 
|     Implemented support for computing cumulative derivatives of the Plifs.
|     G
| 
| M	src/structure/Plif.cpp
| M	src/structure/Plif.h
|  
* commit e421788e9471334eb517cdcbb3dee4eee63d933b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Nov 1 00:28:48 2006 +0000
| 
|     fixed a few bug that only appeared if ARRAY_ASSERT is used.
|     G
| 
| M	src/lib/DynamicArray.h
|  
* commit 0be3044bb1b981d152a6b731a5394ed4f8a2f6a8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 31 17:33:55 2006 +0000
| 
|     fixed a few bugs in the WD and WDS kernel related to position_weights.
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit ac8d1dd0fc955f362fee1d9439e1e5eb24b0ad2a
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 30 08:59:40 2006 +0000
| 
|     remove the old files.
|     G
| 
| D	src/lib/DynArray.h
| D	src/lib/DynArray.i
| D	src/lib/DynArray2.h
| D	src/lib/DynArray3.h
|  
* commit a730934efbc33eb22beba1eacecdddda6cbb2b80
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 30 08:58:41 2006 +0000
| 
|     Created a static array class and added the automatic resize stuff in a derived class CDynamicArray. All higher dimensional arrays are derived from the static array class.
|     
|     G
| 
| M	src/kernel/CommUlongStringKernel.h
| A	src/lib/Array.h
| A	src/lib/Array2.h
| A	src/lib/Array3.h
| A	src/lib/DynamicArray.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 1577f0e0cb0f82fc120baee035a801dce595b455
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:57:57 2006 +0000
| 
|     some last changes.
|     Should be all nice and smooth now.
|     G
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 993c1ad20f1ffcbad64dec3bb09b5e56da650242
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:42:19 2006 +0000
| 
| M	src/lib/io.h
|  
* commit b1c3dccad2e02ee358c8cfaed6b55cbbd07df2e9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 18:05:43 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 75c2dc1af00e2a537489a5f7566f944ab81e3909
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 17:35:03 2006 +0000
| 
| M	src/lib/DynArray.h
|  
* commit 8e7d383dd89fe8b2a24d668d6ad05bdfb60afa30
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 29 17:27:36 2006 +0000
| 
|     speedups and debug.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 4f7201439c21bb8fd59fe61b9ef2813cfda32023
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 23:56:46 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 9519e046a2081fcbb9d8758376ce96eda4b75c04
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 23:25:22 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 6df0281b82de1f10a140871558c1e635eeafe392
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 22:55:23 2006 +0000
| 
| M	src/lib/DynArray.h
| M	src/structure/DynProg.cpp
|  
* commit 7ce5a992ed8fe08496ac1d025cfd7787b87a92d9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 22:36:03 2006 +0000
| 
| M	src/structure/DynProg.cpp
|  
* commit 969e67acd0d329543e22e8807afc0c2bacb8168e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:27:02 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/DynArray.h
|  
* commit 6df0c950deb1210bf774c3af008549379394c5a7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:20:14 2006 +0000
| 
|     minor fix.
|     G
| 
| M	src/lib/DynArray.h
|  
* commit d60361019a23c1b25646ea878344692c436151cd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 28 21:07:01 2006 +0000
| 
|     added some statistics functions for DynArrays.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/lib/Trie.h
| M	src/structure/DynProg.cpp
|  
* commit 5008fda0a1474fd69e4746e21037df17199eb189
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 11:54:14 2006 +0000
| 
|     seems to work, but it is slower...
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray3.h
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
|  
* commit 513bbc29dc4ee4bfd64d9c27ac6c01119e33d1b3
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 09:31:18 2006 +0000
| 
|     the matlab interface seems to still work after a few minor bug fixes.
|     performing more checks now.
|     
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/lib/io.h
| M	src/structure/DynProg.cpp
| M	src/structure/Plif.cpp
|  
* commit d3ea97fabbf11537410690a67cddf6a9ceb10de6
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 27 08:36:03 2006 +0000
| 
|     Code is done.. now it needs some testing.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 639dfb2774d4504e313d33e033f52a2050cc9391
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 22:03:50 2006 +0000
| 
|     fixed a few DynArray bugs.
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
|  
* commit 51420473f9dad185e7fe87f38df81e5ab2d86a37
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:56:22 2006 +0000
| 
|     @Soeren: do I have to alloc the return argument as well, or is this done outside? (e.g. in best_path_get_states)
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit eb44b4af80a3363702bbe66940eefa91a0acca73
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:48:19 2006 +0000
| 
|     minor fix
|     G
| 
| M	src/structure/DynProg.cpp
|  
* commit 0c676ad22e4b6cca2d7bbf2c117ef80aaeca5647
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:46:24 2006 +0000
| 
|     The functions to be swigged are implemented... but not tested yet.
|     Please swig them.
|     
|     Gu
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 75c24b06f941297cf68899847d60aa3bf9fdae5d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 21:17:27 2006 +0000
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 2b58b2de23888e9e0916f6406c59b9750659f2bf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 20:31:27 2006 +0000
| 
|     compiles again
|     G
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
|  
* commit 71d4f984a39b4fedb0c8ef504e1de1217fdbc531
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 19:38:21 2006 +0000
| 
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
|  
* commit 893ac55dc0935bb91d92b2cfb1f2ff57584225d7
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 19:27:40 2006 +0000
| 
|     does not compile...
|     G
| 
| M	src/lib/DynArray.h
| M	src/lib/DynArray2.h
| M	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d860ca37466a9bf8279a4a85c0c9279e4cb69755
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 17:52:34 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/structure/DynProg.h
|  
* commit 76a3d646366181de670d72416fac075eb75c5e4c
| Author: Cheng Soon Ong <chengsoon.ong@inf.ethz.ch>
| Date:   Thu Oct 26 14:39:14 2006 +0000
| 
|     example with temporary python hack to overcome bug in svm.classify()
| 
| A	python/examples/wd_kernel2.py
|  
* commit efdf0c952bb13741a70be408b0b02452a4176cd1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 14:27:40 2006 +0000
| 
| M	src/TODO
|  
* commit 9c1e57ee6b3bbe971b404ef8351d6ffa825e1652
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 13:44:37 2006 +0000
| 
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit d38943fccb846218ffcea0fc954e91205da7a685
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 13:12:45 2006 +0000
| 
| A	src/lib/DynArray3.h
| M	src/structure/DynProg.cpp
| M	src/structure/DynProg.h
|  
* commit 7472cf088cfb36aa194ee013250389a4eb22d760
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 13:06:15 2006 +0000
| 
|     +wd scoring AAA example
| 
| A	matlab/examples/wds_shift_interp.m
|  
* commit 2d4bb0b24e44a2ab622e8aceac7cf1275ab6a097
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 12:39:13 2006 +0000
| 
|     removed model_prob_no_b_trans.
|     Hope nobody needs it.
|     G
| 
| M	src/gui/Matlab.cpp
|  
* commit e49fe93504b14332fc8825b28a2317cfd1273631
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 12:37:26 2006 +0000
| 
|     a lot of changes for the Dynamic Programing stuff.
|     It is in a new class now and in a new sub directory "structure".
|     
|     Gu
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| D	src/distributions/hmm/HMM_bestpath.cpp
| D	src/distributions/hmm/HMM_bestpath_2struct.cpp
| D	src/distributions/hmm/HMM_bestpath_simple.cpp
| D	src/distributions/hmm/fibheap.cpp
| D	src/distributions/hmm/fibheap.h
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/lib/DynArray.h
| A	src/lib/DynArray2.h
| D	src/lib/Plif.cpp
| D	src/lib/Plif.h
| A	src/lib/fibheap.cpp
| A	src/lib/fibheap.h
| A	src/structure/DynProg.cpp
| A	src/structure/DynProg.h
| A	src/structure/Plif.cpp
| A	src/structure/Plif.h
|  
* commit 1108ce6e6dd22b05ae9112f4b9e166445f3c53ec
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 26 11:42:10 2006 +0000
| 
|     forgotten fix for <float.h>
| 
| M	src/distance/Distance.h
| M	src/lib/Mathematics.h
|  
* commit 3f76e4814ce1243f352977295bdf3d1d2e330c01
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 26 08:45:27 2006 +0000
| 
|     + added interface for several classifiers (not tested yet)
|     + changed "float.h" to <float.h> in distance/Distance.h
|     TODO
|     + add -lcblas -llapack -latlas to linking flags for swig _wrap files
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/distance/Distance.h
| M	src/kernel/Kernel.i
|  
* commit 151baeafdc63d27c44a2a66e6e237a9ac4a7bd5f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 26 07:18:23 2006 +0000
| 
|     new Plifs compile and should also work.
|     Now working on the bestpath stuff.
|     G
| 
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/Plif.h
|  
* commit 720eebe766887cdf571cdae5f21e759def355b87
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 20:45:54 2006 +0000
| 
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
|  
* commit 74aa8b2d3e38af8c1b9c953e93c30737562b58d2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:48:21 2006 +0000
| 
|     almost there...
| 
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/lib/Plif.cpp
| M	src/lib/Plif.h
|  
* commit 7f1ed8c5b190dbe07a485c981bddf958cbc27f76
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:40:08 2006 +0000
| 
| D	src/distributions/hmm/penalty_info.cpp
| D	src/distributions/hmm/penalty_info.h
|  
* commit de73d125d0f1823637931dd587074d975b21ed08
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 16:39:58 2006 +0000
| 
|     tmp ci.
|     G
| 
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/guilib/GUIMatlab.cpp
| A	src/lib/Plif.cpp
| A	src/lib/Plif.h
|  
* commit 6aab9be9670326bc6ee2a12eeaef334408e77c3b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:41:33 2006 +0000
| 
|     +fix mathematics / realsparse features include
| 
| M	src/distance/Distance.h
| M	src/guilib/GUIDistance.cpp
|  
* commit 8b1a2240760d8a1207eb62e1de9306963fd6a4ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:34:20 2006 +0000
| 
|     + distances (christians work)
| 
| A	matlab/examples/test_knn.m
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| A	src/distance/Canberra.cpp
| A	src/distance/Canberra.h
| A	src/distance/Chebyshew.cpp
| A	src/distance/Chebyshew.h
| A	src/distance/Distance.cpp
| A	src/distance/Distance.h
| A	src/distance/DistanceMachine.cpp
| A	src/distance/DistanceMachine.h
| A	src/distance/Geodesic.cpp
| A	src/distance/Geodesic.h
| A	src/distance/Jensen.cpp
| A	src/distance/Jensen.h
| A	src/distance/Manhattan.cpp
| A	src/distance/Manhattan.h
| A	src/distance/Minkowski.cpp
| A	src/distance/Minkowski.h
| A	src/distance/RealDistance.h
| A	src/distance/SimpleDistance.h
| A	src/distance/StringDistance.h
| M	src/gui/GUI.h
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| A	src/guilib/GUIDistance.cpp
| A	src/guilib/GUIDistance.h
| M	src/guilib/GUIKNN.cpp
| M	src/lib/common.h
|  
* commit f180488428c4e40859e27bb5435e13d4ee358ca7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 25 13:27:04 2006 +0000
| 
| M	python/examples/wd_kernel.py
|  
* commit 9babe4cfa952498f5e7fe5b41ac4eb9c2153e4ac
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Wed Oct 25 10:57:44 2006 +0000
| 
| M	src/classifier/svm/CPLEXSVM.cpp
|  
* commit 6b775ebc4cf889257daf85fd5b4c7e8394ff9157
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:16:57 2006 +0000
| 
| M	octave/examples/wd_kernel.m
|  
* commit 05b4b1773e9b8378d13fad17434ef90ec3ac6f53
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:14:19 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 111b686ca14a4426a1633a8527d7002466f3c570
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 10:13:44 2006 +0000
| 
|     made sure nobody uses compact tries with mismatches (conceptually not really possible).
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 4e83607d2fed5d78b5ffac9dc7a72465d2068e18
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 08:10:18 2006 +0000
| 
| M	octave/examples/wds_kernel.m
|  
* commit 226c8f61e84ff62f6886aeca9f611667cf8500b9
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Oct 24 08:10:04 2006 +0000
| 
|     I moved the experimental code to WDS kernel class..
|     The function compute_scoring is still in the WDS class, most of the dependent functions are to be found in the class CTrie.
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| D	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| D	src/kernel/WeightedDegreePositionCharKernel_new.h
|  
* commit c5316fdd240ba6282fc00142fdb8ad7a70fb04bd
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:59:21 2006 +0000
| 
|     transformed the compute_scoring code.
|     G
| 
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 051e91ac75c90e3a1b8592dea1604f36e515f267
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:34:25 2006 +0000
| 
|     the test scripts for WD and WDS.
|     They should give deviations of about 1e-8.
|     G
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
|  
* commit 643e1200e467ed699b6a991587c7ab93306b6920
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 20:33:38 2006 +0000
| 
|     WD and WDS_new should be usable now with all combinations of options.
|     I did not test MKL.
|     
|     I will migrate the compute_scoring functions now and then rename the class to WeightedDegreePositionCharKernel (from WeightedDegreePositionCharKernel_new).
|     
|     Gu
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 601807e117d73ba00746dcbf77b86208da18a317
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 23 19:29:51 2006 +0000
| 
|     Was still working. I cannot find the bug. It has something to do with the terminal nodes, but I cannot figure it out.
|     Have to disable compact nodes for FASTBUTMEMHUNGRY WDS kernel..
|     G
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit fda70f7ffe1e744ff7d0e3e746cc828250a51787
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:51:51 2006 +0000
| 
|     wds_kernel example with some more tests...
|     G
| 
| M	octave/examples/wds_kernel.m
|  
* commit df1590450f3eef811196703a4b255126afacbbed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:45:12 2006 +0000
| 
|     minor change.
|     G
| 
| M	src/lib/Trie.h
|  
* commit 60fd964aac3ef18f9200ee1b9d27c05c75a2196d
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 01:43:48 2006 +0000
| 
|     Introduced SLOWBUTMEMEFFICIENT for batch_computation. Gives the same results as with normal kernels and with init_kernel_optimization.
|     
|     But there are still differences of up to 1e-3 in the outputs when I use FASTBUTMEMHUNGRY.
|     I explain it with numerical difficulties, but I'm not sure...
|     
|     Gu
| 
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
|  
* commit b2db142c4da66a0dfbb8466831a68d567cbfd02e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 00:39:36 2006 +0000
| 
|     The option SLOWBUTMEMEFFICIENT works, but FASTBUTMEMHUNGRY still deviates (also batch_computation) for WDS kernel.
|     Numerical problems?
|     G
| 
| M	src/lib/Trie.h
|  
* commit cf575fdb6b479227a01fbeffff0a0c583e74f0d8
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Oct 22 00:29:26 2006 +0000
| 
|     there are still minor differences...
|     Why?
|     Gu
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.h
|  
* commit bace6683ae9ec032d3c23a139dbd9c913b9586e2
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 21:55:10 2006 +0000
| 
|     almost works...
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.h
|  
* commit 9f68e397bbec590d8c4995e736fd60031c3e9dfc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 18:00:40 2006 +0000
| 
|     WD kernel works again.
|     The new WDS kernel does not work yet.
|     If you don't use WeightedDegreePositionCharKernel_new, you are not affected.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 2b53e187fc9455e90a70c73dfe2074f4c102cf94
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 17:08:32 2006 +0000
| 
|     still working.
|     G
| 
| M	src/lib/Trie.h
|  
* commit 1b0591cecdebeeb9d58edc52b5e5a02f1bd500b1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 17:03:28 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 111539ef5b9df387db470deb44208107ad92c283
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:56:38 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 8533ee778cf168dd2a89257d3e355c2f21d8de7f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:24:07 2006 +0000
| 
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel_new.h
|  
* commit a3d2a07c25bd489c4cb70fa2ce912e6a190934bf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sat Oct 21 16:18:46 2006 +0000
| 
|     Experimental... changed quite a few things in the WD and WDs code...
|     Still trying.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreePositionCharKernel_new.cpp
| A	src/kernel/WeightedDegreePositionCharKernel_new.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit e817459efebe69c8277222245a92333af5ed8f27
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 21 16:13:21 2006 +0000
| 
| A	python/examples/spec_kernel.py
| M	python/examples/wd_kernel.py
|  
* commit 5b4938b00b9e09bfa96dadc2383e707d6d117ca0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 21 15:52:27 2006 +0000
| 
|     + spec kernel w/ sa (not working...)
| 
| M	src/classifier/svm/SVM.cpp
| M	src/features/Alphabet.i
| M	src/features/Features.i
| M	src/features/StringFeatures.h
| M	src/features/StringFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/SpectrumKernel.cpp
| M	src/kernel/SpectrumKernel.h
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/common.h
| M	src/lib/suffixarray/BWT.h
| M	src/lib/suffixarray/BoundedRangeWeight.cpp
| M	src/lib/suffixarray/BoundedRangeWeight.h
| M	src/lib/suffixarray/ChildTable.cpp
| M	src/lib/suffixarray/ChildTable.h
| M	src/lib/suffixarray/ConstantWeight.cpp
| M	src/lib/suffixarray/ConstantWeight.h
| M	src/lib/suffixarray/ESA.cpp
| M	src/lib/suffixarray/ESA.h
| M	src/lib/suffixarray/ErrorCode.h
| M	src/lib/suffixarray/ExpDecayWeight.cpp
| M	src/lib/suffixarray/ExpDecayWeight.h
| M	src/lib/suffixarray/I_LCPFactory.h
| M	src/lib/suffixarray/I_SAFactory.h
| M	src/lib/suffixarray/I_WeightFactory.h
| M	src/lib/suffixarray/InductionSort.cpp
| M	src/lib/suffixarray/InductionSort.h
| M	src/lib/suffixarray/KSpectrumWeight.cpp
| M	src/lib/suffixarray/KSpectrumWeight.h
| M	src/lib/suffixarray/LCP.cpp
| M	src/lib/suffixarray/LCP.h
| M	src/lib/suffixarray/MSufSort.cpp
| M	src/lib/suffixarray/MSufSort.h
| M	src/lib/suffixarray/Stack.h
| M	src/lib/suffixarray/W_kasai_lcp.cpp
| M	src/lib/suffixarray/W_kasai_lcp.h
| M	src/lib/suffixarray/W_msufsort.cpp
| M	src/lib/suffixarray/W_msufsort.h
|  
* commit 4606baead54234221c014ec2eebb229c66c02f77
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 17:44:46 2006 +0000
| 
|     massive speedup of compute_scoring
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 1f42356f9d8e9406fd7cd65b0c68be1dad62a3af
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 11:22:50 2006 +0000
| 
|     +init_kernel_optimization in svm object
|     +fix numpy_svm exmaple
| 
| M	python/examples/numpy_svm.py
| M	python/examples/wd_kernel.py
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
|  
* commit 2f55ae6b032569cab61c83780c2520673c1522d1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 20 11:01:00 2006 +0000
| 
|     fixed batch computation bug.
|     G
| 
| M	src/classifier/svm/SVM.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit a89970a900af2523c8a97306ae1da73b60d5cc44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 11:00:31 2006 +0000
| 
|     +fix wrong mem access
|     +return all degrees at once (reshape necessary...)
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 9e7ddf0721677b4e571b26cf891643fce5e2b36a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 10:38:04 2006 +0000
| 
| M	src/classifier/svm/SVM.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit ac3105f6855dfc87eb3f95268138051af41f6446
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 09:29:54 2006 +0000
| 
|     one more wd score computation fix
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit e2bef4f05f9e560725d54b71b19058a045e2d29c
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Fri Oct 20 09:08:02 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 6d50f3efcd2f4cee5498022854e7f62fde811ce7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 20 07:31:04 2006 +0000
| 
|     wd kernel python example works...
|     BUT: not anymore w/ batchcomputation (gunnar ???)
|     	and gives different results w/ linadd - hmmhh...
| 
| M	python/examples/wd_kernel.py
|  
* commit 54ec47186f611cdc00a9593a05a805ddbb86cc83
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 23:25:54 2006 +0000
| 
|     + a wd kernel example, random acgt vs. aaaaa ...
|     	kernel matrix gives neat results,
|     but svm currently leads to a constant result (whoops ?)
| 
| M	src/configure
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/io.cpp
| M	src/lib/numpy.i
|  
* commit 3d8a94f05e0c104d7ffce123a2d64114e9f1665b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:24:20 2006 +0000
| 
| M	octave/examples/wd_kernel.m
|  
* commit a56b05c736b7b6983443317af33ed13fb7cece21
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:22:42 2006 +0000
| 
| M	src/lib/Trie.h
|  
* commit 433a93d8b105a7df275641ac7222f62346650554
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 22:19:21 2006 +0000
| 
|     WD Kernel with compacted leaves works ... finally.
|     In some toy experiments needed about 7 times less memory and is even a bit faster:
|     
|     10k trainings daten, 500k test daten, ohne optimierung
|     8642059 tree elements
|     49.59s svm training
|     0.64s  init_kernel_optimization
|     22.24s testing
|     
|     10k trainings daten, 500k test daten, mit optimierung
|     1395742 tree elements
|     45.37s svm training
|     0.37s init_kernel_optimization
|     17.78s testing
|     
|     max(abs(out-out2))=3.3993e-08
|     
|     Cheers, G
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 0710633f5e7348af12e0afd46e442b382168faaf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:23:06 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/classifier/svm/SVM.cpp
|  
* commit ec2873d85ed5466dd7a4a1003d7987cb5ef3c021
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:19:48 2006 +0000
| 
|     *** empty log message ***
| 
| M	src/lib/io.cpp
|  
* commit fc51f55012a5973389978b234b91feae4b806144
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 21:09:54 2006 +0000
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 22f0cf787446baae333b7a5f987b1372cdd0d15b
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 20:38:31 2006 +0000
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 8f9bb9705d0a17def0c4e585e2ddc2efdf1cf9bc
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:44:05 2006 +0000
| 
|     renamed Mathmatics into Mathematics
|     Many subsequent changes.
|     G
| 
| M	src/classifier/KNN.cpp
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/LDA.cpp
| M	src/classifier/LPM.cpp
| M	src/classifier/Perceptron.cpp
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/guilib/GUIMath.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/io.cpp
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/NormOne.cpp
| M	src/preproc/PCACut.cpp
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWordString.cpp
| M	src/regression/svr/SVR_light.cpp
|  
* commit 5da74cf0804218309e50974940b59b7384ad5847
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:30:21 2006 +0000
| 
| A	src/lib/Mathematics.i
| D	src/lib/Mathmatics.i
|  
* commit 120d93e082fc081b56afca9dc0bcbafd054b2bc1
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 19:29:45 2006 +0000
| 
|     many changes still working.
|     G
| 
| M	src/lib/Cache.h
| M	src/lib/DynArray.h
| A	src/lib/Mathematics.cpp
| A	src/lib/Mathematics.h
| D	src/lib/Mathmatics.cpp
| D	src/lib/Mathmatics.h
| M	src/lib/Mathmatics.i
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
| M	src/lib/io.cpp
|  
* commit 9dde5629feb3473aaf5936ab31516aecf799124e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 19:02:43 2006 +0000
| 
|     ...looks promising... but needs another check by alex
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/suffixarray/MSufSort.h
|  
* commit 51ec3c919b247123257b2dae959a917e69b589c7
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Oct 19 16:41:07 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 00d91e95b1e76ff61b48b4689cb6c8e796d3f0d7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 15:04:20 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 7f513296d09858f338a8297bbbababfead30f7ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 14:09:54 2006 +0000
| 
| M	src/README.developer
|  
* commit aa35bb0bd9e30a86952dbfd2376b239ab5d367f2
| Author: Alexander Zien <Alexander.Zien@lifebiosystems.com>
| Date:   Thu Oct 19 13:01:46 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 641d79469bfd56dfaf3c7627a3837c0db01e00de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 10:49:03 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit 16d43006c913326cbdc3d85eec5df6d7a4860cf7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 19 10:21:53 2006 +0000
| 
| M	python/examples/wd_kernel.py
| M	src/features/ByteFeatures.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/numpy.i
|  
* commit 10727b0001b1bd2a3dd03f4fd466a3509d6a572f
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 10:09:45 2006 +0000
| 
|     fixed bug.
|     G
| 
| M	src/features/Alphabet.cpp
|  
* commit 403327df22e6f6ea30a32d1a28b9d5e4cfe064ed
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 10:02:23 2006 +0000
| 
|     Introduced an "RNA" alphabet.
|     G
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/lib/common.h
|  
* commit ad4a701e1c1e40fdfaaae684a4425d550079480e
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 09:51:36 2006 +0000
| 
|     still working...
|     G
| 
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit 2110f7cc643f81a95714e7ab6d667c1d3e9473a0
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Thu Oct 19 08:46:50 2006 +0000
| 
|     experimental WD kernel with compacted ends...
|     I'm still testing.
|     G
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
| M	src/lib/Trie.h
|  
* commit a188ab999ee7d11584e9ac723d18cf5db66eb380
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 16:21:31 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 6a06e858293e20959cdf13b192d325a00eea20f6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 11:48:27 2006 +0000
| 
| M	src/configure
|  
* commit 65aba04739c7ee43f43cc6077a74a1c450cbd972
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 11:44:38 2006 +0000
| 
|     +disable -fexception w/ matlab as pthreads won't compile (syntax errr...
|     +exclude configure-* from linking
| 
| M	src/Makefile
| M	src/configure
|  
* commit fa36326f34404b58c130d45a5431d778a87b65dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 10:43:27 2006 +0000
| 
|     +some more matlab detection
| 
| M	src/configure
|  
* commit 31c2e848d5ef3b52d78b00b420c88a29467e5e89
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 10:25:06 2006 +0000
| 
| A	src/kernel/ConstKernel.i
|  
* commit bbb96065c06e127e892461511f0380efec7da027
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 09:18:37 2006 +0000
| 
| M	src/README.developer
| M	src/TODO
|  
* commit c7734de6ce8375152f1bcaffd4ee4eea14a00ab6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 18 08:58:32 2006 +0000
| 
|     +updated examples (retreat talk)
|     +fix makefile dependency generation
|     +fix swig IN/OUT typemaps to use fortran order
| 
| M	octave/examples/spec_kernel.m
| M	octave/examples/wds_kernel.m
| M	python/examples/multiple_svms_matplotlib.py
| A	python/examples/numpy_svm_matplotlib.py
| M	python/examples/wd_kernel.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| M	src/features/Labels.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/lib/numpy.i
|  
* commit cb9e965a0e92e8d43b1cbed3d2515be741fc72c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 21:52:22 2006 +0000
| 
|     oopsi, wrong malloc sizes
| 
| M	src/lib/numpy.i
|  
* commit b7c011d54656b9fb56b882555817faacd232c0a9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 21:19:56 2006 +0000
| 
| M	R/examples/hmm.R
|  
* commit 3981c19dff507e206d1b5ba950d8bfe2c1fa38f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 20:33:52 2006 +0000
| 
|     +fix octave support under osx
| 
| M	src/configure
|  
* commit 601aade3ddb48dc1b562ce8db6fb08aac7246591
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 19:37:42 2006 +0000
| 
|     create a .dll (not .so) for R/python under cygwin
| 
| M	src/configure
|  
* commit 3385303b8c2012b59d037ec61e3eb09f0046cb95
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 18:56:48 2006 +0000
| 
|     +make configure work on osx w/ python
|     	try ./configure --enable-python --python=python2.4
|     if python -c "import numpy;" fails
| 
| M	src/Makefile
| M	src/configure
| M	src/guilib/GUIPython.cpp
|  
* commit 2d4cb1369187d12e51011b38babc9a4ef08e8891
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 15 17:38:26 2006 +0000
| 
|     +configure now does a lot more checks (tries to build simple R,octave,python,numpy
|     		scripts, checks for makedepend,swig etc...)
|     +Makefile should take care of swig dependencies now (incorporated in .generate_link_dep...)
|     +fixed octave,python and R interface to work again :-)
|     +python now uses compatibility layer of numpy -> no more numarray necessary
|     +updated all (oct/py/R) examples to work again
| 
| M	R/Makefile
| M	R/examples/hmm.R
| M	R/sg/DESCRIPTION
| M	R/sg/inst/doc/sg.pdf
| M	octave/examples/hmm.m
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| D	python/examples/fabio_test.py
| D	python/examples/fileA.dna
| D	python/examples/fileB.dna
| M	python/examples/multiple_svms.py
| M	python/examples/numpy_commands.py
| M	python/examples/svm_classificaton.py
| M	python/examples/svr_regression.py
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/Octave.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/lib/io.cpp
| M	src/lib/lapack.cpp
| M	src/lib/numpy.i
| M	src/lib/suffixarray/MSufSort.h
|  
* commit 780d5d6c17bdcebe2fcb76ef2a70b01089b65599
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Oct 13 16:03:27 2006 +0000
| 
|     *** empty log message ***
| 
| M	python/examples/numpy_svm.py
|  
* commit cdfffc32d3fffcb85acb43113fb09ef7041ea054
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 13 15:56:29 2006 +0000
| 
| M	src/ChangeLog
| M	src/TODO
|  
* commit 20df41d077fa0980e22aefe3c8c6a217c349584e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 13 15:49:16 2006 +0000
| 
|     ...finally working numpy & swig
| 
| A	python/examples/numpy_svm.py
| M	src/Makefile
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_light.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/Kernel.i
| M	src/lib/numpy.i
|  
* commit 2564faccdcfaf5b91d43c9b2d94f0f2586ec42f4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 12 16:03:05 2006 +0000
| 
|     this works now :)
|     
|     import features.Features as f
|     import numpy as N
|     
|     feat1 = f.CharFeatures(N.chararray((10,5),1),f.DNA)
|     feat2 = f.ShortFeatures(N.zeros((10,5),N.short))
|     feat3 = f.WordFeatures(N.zeros((10,5),N.uint16))
|     feat4 = f.RealFeatures(N.zeros((10,5),N.double))
|     feat5 = f.ByteFeatures(N.zeros((10,5),N.uint8),f.DNA)
|     lab = f.Labels(N.array([1,2.,3]))
| 
| A	python/examples/numpy_commands.py
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/RealFeatures.h
| M	src/features/RealFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/features/WordFeatures.i
| M	src/lib/numpy.i
|  
* commit 6cc467b0f0e2dbd95e078ecc5d34b50e4b599c50
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 14:06:41 2006 +0000
| 
|     dadfa
| 
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit e421f171999d8a675e524996e916e6d8e6a0ffb5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 12 12:08:11 2006 +0000
| 
|     ...
| 
| M	octave/examples/wd_kernel.m
| M	python/examples/wd_kernel.py
| M	src/Makefile
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 6603757737dbc60e7d16cb9f8eafc6f73add4968
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 08:38:35 2006 +0000
| 
|     example
| 
| M	python/examples/wd_kernel.py
|  
* commit 43b6cf46faef77bfbb111e81e93d6a450ff8c8a9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Oct 12 08:31:43 2006 +0000
| 
|     trying to get numpy typemapping to work.
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 70f4c395f2cebf17dd757d5233bff83cb58c7f7c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 20:26:16 2006 +0000
| 
|     it works :-)
|     
|     import numpy as N
|     import features.Features as f
|     a=f.CCharFeatures(f.DNA, 10)
|     print a.doubleSum(N.array([1.,2.,3.,4.,5.]))
|     a.testNumpy2(N.zeros((5,10),'i'))
|     
|     x=N.chararray((3,10),1)
|     for i in xrange(10):
|     	x[(0,i)]='a'
|     for i in xrange(10):
|     	x[(1,i)]='b'
|     for i in xrange(10):
|     	x[(2,i)]='c'
|     
|     a.testNumpy(x)
|     
|     a.doubleSum([1,2,3.14,4])
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit 0b0d94236b47cce72e6f3470e1fe002e22b324a9
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 17:29:00 2006 +0000
| 
|     added some shit
| 
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/lib/numpy.i
|  
* commit 7e1ed9a2634ef8cfee39d77f5a5991e01b43a5e1
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 14:13:15 2006 +0000
| 
|     cleaned up numpy file added numpy.i to Features.
| 
| M	src/features/Features.i
| M	src/lib/numpy.i
|  
* commit 07bbdf40a05eb09dba42b5c6f22b9c7e792b7050
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 14:00:53 2006 +0000
| 
|     added numpy typemaps
| 
| A	src/lib/numpy.i
|  
* commit 4211113c280171d40ba824704e55cdfda3ff3a48
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 13:41:23 2006 +0000
| 
|     removed LONG from WeightedDegreeCharKernel, fix for the "thisown" problem.
| 
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/Labels.i
| M	src/features/SimpleFeatures.h
| M	src/kernel/Kernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.i
|  
* commit 55b27489ada1b4398d2933926af3653747259a8d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 13:00:51 2006 +0000
| 
|     + also check alphabet for uint8 charfeatures (not just string*freatures)
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit b56cb397e5a97fefcfba1e70dfc31a37ebd2273e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 12:24:10 2006 +0000
| 
|     + IUPAC_NUCLEIC_ACID and IUPAC_AMINO_ACID alphabets (16 / 23 symbols)
| 
| M	src/features/Alphabet.cpp
| M	src/lib/common.h
|  
* commit d60cd92353280ec59e4fce60d054f6f4ecdf063a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 11:03:32 2006 +0000
| 
|     -removed sparserealfeatures
|     +introduce strict alphabet checking on set features (valid number of symbols
|     		and whether each symbol is valid will be checked)
|     - remove B_n B_* etc from DNA alphabet as DNA == ACGT
| 
| M	src/distributions/hmm/HMM.cpp
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/ShortFeatures.cpp
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| D	src/features/SparseRealFeatures.cpp
| D	src/features/SparseRealFeatures.h
| D	src/features/SparseRealFeatures.i
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIPreProc.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 806d31fdeb3668eb7e475187300830235c93247e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 10:02:50 2006 +0000
| 
| M	src/Makefile
| M	src/TODO
| M	src/classifier/svm/SVM_light.h
|  
* commit a3312140d4cab145264c4403f0eccf8eb4967686
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Oct 11 09:45:30 2006 +0000
| 
|     modified interfaces for SVMs, still a problem with inheritance.
| 
| M	src/Makefile
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/SVM_light.i
| M	src/classifier/svm/__init__.py
|  
* commit 58c88896d8f8bb0f8d3c020c2580295ab419ad49
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 09:14:43 2006 +0000
| 
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| A	src/kernel/SpectrumKernel.cpp
| A	src/kernel/SpectrumKernel.h
| D	src/kernel/SpektrumKernel.cpp
| D	src/kernel/SpektrumKernel.h
| A	src/lib/suffixarray/BWT.cpp
| A	src/lib/suffixarray/BWT.h
| A	src/lib/suffixarray/BoundedRangeWeight.cpp
| A	src/lib/suffixarray/BoundedRangeWeight.h
| A	src/lib/suffixarray/ChildTable.cpp
| A	src/lib/suffixarray/ChildTable.h
| A	src/lib/suffixarray/ConstantWeight.cpp
| A	src/lib/suffixarray/ConstantWeight.h
| A	src/lib/suffixarray/DataType.h
| A	src/lib/suffixarray/ESA.cpp
| A	src/lib/suffixarray/ESA.h
| A	src/lib/suffixarray/ErrorCode.h
| A	src/lib/suffixarray/ExpDecayWeight.cpp
| A	src/lib/suffixarray/ExpDecayWeight.h
| A	src/lib/suffixarray/I_LCPFactory.h
| A	src/lib/suffixarray/I_SAFactory.h
| A	src/lib/suffixarray/I_WeightFactory.h
| A	src/lib/suffixarray/InductionSort.cpp
| A	src/lib/suffixarray/InductionSort.h
| A	src/lib/suffixarray/IntroSort.h
| A	src/lib/suffixarray/KSpectrumWeight.cpp
| A	src/lib/suffixarray/KSpectrumWeight.h
| A	src/lib/suffixarray/LCP.cpp
| A	src/lib/suffixarray/LCP.h
| A	src/lib/suffixarray/MSufSort.cpp
| A	src/lib/suffixarray/MSufSort.h
| A	src/lib/suffixarray/SConstruct
| A	src/lib/suffixarray/Stack.h
| A	src/lib/suffixarray/W_kasai_lcp.cpp
| A	src/lib/suffixarray/W_kasai_lcp.h
| A	src/lib/suffixarray/W_msufsort.cpp
| A	src/lib/suffixarray/W_msufsort.h
| D	src/lib/suffixarrays/BWT.cpp
| D	src/lib/suffixarrays/BWT.h
| D	src/lib/suffixarrays/BoundedRangeWeight.cpp
| D	src/lib/suffixarrays/BoundedRangeWeight.h
| D	src/lib/suffixarrays/ChildTable.cpp
| D	src/lib/suffixarrays/ChildTable.h
| D	src/lib/suffixarrays/ConstantWeight.cpp
| D	src/lib/suffixarrays/ConstantWeight.h
| D	src/lib/suffixarrays/DataType.h
| D	src/lib/suffixarrays/ESA.cpp
| D	src/lib/suffixarrays/ESA.h
| D	src/lib/suffixarrays/ErrorCode.h
| D	src/lib/suffixarrays/ExpDecayWeight.cpp
| D	src/lib/suffixarrays/ExpDecayWeight.h
| D	src/lib/suffixarrays/I_LCPFactory.h
| D	src/lib/suffixarrays/I_SAFactory.h
| D	src/lib/suffixarrays/I_WeightFactory.h
| D	src/lib/suffixarrays/InductionSort.cpp
| D	src/lib/suffixarrays/InductionSort.h
| D	src/lib/suffixarrays/IntroSort.h
| D	src/lib/suffixarrays/KSpectrumWeight.cpp
| D	src/lib/suffixarrays/KSpectrumWeight.h
| D	src/lib/suffixarrays/LCP.cpp
| D	src/lib/suffixarrays/LCP.h
| D	src/lib/suffixarrays/MSufSort.cpp
| D	src/lib/suffixarrays/MSufSort.h
| D	src/lib/suffixarrays/SConstruct
| D	src/lib/suffixarrays/Stack.h
| D	src/lib/suffixarrays/W_kasai_lcp.cpp
| D	src/lib/suffixarrays/W_kasai_lcp.h
| D	src/lib/suffixarrays/W_msufsort.cpp
| D	src/lib/suffixarrays/W_msufsort.h
|  
* commit 2711a3c7edc28c02867e9d1d22c9d5318532ccde
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 11 08:50:38 2006 +0000
| 
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SparseKernel.h
| D	src/kernel/SparseRealKernel.h
| D	src/kernel/SparseRealKernel.i
| M	src/kernel/SpektrumKernel.cpp
| M	src/kernel/SpektrumKernel.h
| M	src/kernel/StringKernel.h
|  
* commit 6ae3e4c1417adc73efa74937212b69d062c0d151
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 17:30:17 2006 +0000
| 
|     modified swig interfaces to work with SVM module
| 
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/features/Features.i
| M	src/features/RealFeatures.i
|  
* commit 7267c2e22e40c832ec9c3397eb4966b90f079b00
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 16:23:13 2006 +0000
| 
|     modified Classifier and KernelMachine to be modules in order to get the director proxy classes right.
| 
| M	src/classifier/Classifier.i
| M	src/classifier/svm/SVM.i
| M	src/features/ByteFeatures.i
| M	src/features/Features.i
| M	src/features/SimpleFeatures.i
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 86d998a2f59a3cc49114b8dd3080c0727eaa6514
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 15:19:37 2006 +0000
| 
| M	src/.generate_link_dependencies.py
|  
* commit 3b8edacae584acda12bcd7478490096031c287d8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 15:06:16 2006 +0000
| 
|     added swig director support
| 
| M	src/kernel/Kernel.i
|  
* commit 48bef95453ed8065e5461f61c6f0628f5b15f2aa
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 14:43:04 2006 +0000
| 
|     modified Features
| 
| M	src/features/Features.i
|  
* commit dc428957a0a0b63fec7db8838b24b179f1988916
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 13:58:43 2006 +0000
| 
|     +fixed makefile for swig
| 
| M	src/.generate_link_dependencies.py
| M	src/Makefile
| D	src/features/allFeatures.i
|  
* commit 17ec76c3f7d746c448c2b124dc199ae38b16e521
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Oct 10 13:19:54 2006 +0000
| 
|     modified some interfaces
| 
| M	src/features/Features.i
| M	src/features/__init__.py
| M	src/kernel/CommWordKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseRealKernel.i
| M	src/kernel/StringKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/__init__.py
|  
* commit 2e2626626f109fbd5a4771759baf62198c8a5737
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 10:38:05 2006 +0000
| 
| M	src/Makefile
|  
* commit 1b2306187255cbb77b5b58f4995be293b2d3fb1c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 10:06:46 2006 +0000
| 
|     + refactoring swig... now everything is broken
| 
| M	src/classifier/Classifier.i
| M	src/classifier/KNN.i
| M	src/classifier/KernelPerceptron.i
| M	src/classifier/LDA.i
| M	src/classifier/LPM.i
| M	src/classifier/LinearClassifier.i
| M	src/classifier/Perceptron.i
| M	src/classifier/PluginEstimate.i
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/distributions/Distribution.i
| M	src/features/Alphabet.i
| M	src/features/ByteFeatures.i
| M	src/features/CharFeatures.i
| M	src/features/CombinedFeatures.i
| M	src/features/FKFeatures.i
| M	src/features/Features.i
| M	src/features/Labels.i
| M	src/features/MindyGramFeatures.i
| M	src/features/RealFeatures.i
| M	src/features/RealFileFeatures.i
| M	src/features/ShortFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/features/SparseFeatures.i
| M	src/features/SparseRealFeatures.i
| M	src/features/StringFeatures.i
| M	src/features/TOPFeatures.i
| M	src/features/WordFeatures.i
| M	src/features/allFeatures.i
| M	src/kernel/AUCKernel.i
| M	src/kernel/CharPolyKernel.i
| M	src/kernel/Chi2Kernel.i
| M	src/kernel/CombinedKernel.i
| M	src/kernel/CommUlongStringKernel.i
| M	src/kernel/CommWordKernel.i
| M	src/kernel/CommWordStringKernel.i
| M	src/kernel/CustomKernel.i
| M	src/kernel/DiagKernel.i
| M	src/kernel/FixedDegreeCharKernel.i
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HistogramWordKernel.i
| M	src/kernel/Kernel.i
| M	src/kernel/KernelMachine.i
| M	src/kernel/LinearByteKernel.i
| M	src/kernel/LinearCharKernel.i
| M	src/kernel/LinearKernel.i
| M	src/kernel/LinearWordKernel.i
| M	src/kernel/LocalityImprovedCharKernel.i
| M	src/kernel/MindyGramKernel.i
| M	src/kernel/PolyKernel.i
| M	src/kernel/PolyMatchCharKernel.i
| M	src/kernel/PolyMatchWordKernel.i
| M	src/kernel/SalzbergWordKernel.i
| M	src/kernel/SigmoidKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.i
| M	src/kernel/SparseGaussianKernel.i
| M	src/kernel/SparseKernel.i
| M	src/kernel/SparseLinearKernel.i
| M	src/kernel/SparseNormSquaredKernel.i
| M	src/kernel/SparsePolyKernel.i
| M	src/kernel/SparseRealKernel.i
| M	src/kernel/StringKernel.i
| M	src/kernel/WDCharKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/kernel/WordMatchKernel.i
| M	src/lib/Cache.i
| M	src/lib/DynArray.i
| M	src/lib/File.i
| M	src/lib/List.i
| M	src/lib/Mathmatics.i
| M	src/lib/Parallel.i
| M	src/lib/Signal.i
| M	src/lib/SimpleFile.i
| M	src/lib/Time.i
| M	src/lib/Trie.i
| M	src/lib/Version.i
| M	src/lib/common.i
| M	src/lib/config.i
| M	src/lib/io.i
| M	src/lib/lapack.i
|  
* commit 947502dce0f889f47b7eeb2b6bb695282248d3ce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:59:06 2006 +0000
| 
|     spektrum kernel based on SA (not working yet)
| 
| A	src/kernel/SpektrumKernel.cpp
| A	src/kernel/SpektrumKernel.h
|  
* commit 1e858c3a955d4f9d2b4152dc18db6322bacdf041
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:58:38 2006 +0000
| 
| D	src/lib/suffixarrays/.ltp-sa-nsl.cpp.swp
|  
* commit 887dc526fc4984960116541c08411634869c83c3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:58:27 2006 +0000
| 
|     +suffix arrays
| 
| A	src/lib/suffixarrays/.ltp-sa-nsl.cpp.swp
| A	src/lib/suffixarrays/BWT.cpp
| A	src/lib/suffixarrays/BWT.h
| A	src/lib/suffixarrays/BoundedRangeWeight.cpp
| A	src/lib/suffixarrays/BoundedRangeWeight.h
| A	src/lib/suffixarrays/ChildTable.cpp
| A	src/lib/suffixarrays/ChildTable.h
| A	src/lib/suffixarrays/ConstantWeight.cpp
| A	src/lib/suffixarrays/ConstantWeight.h
| A	src/lib/suffixarrays/DataType.h
| A	src/lib/suffixarrays/ESA.cpp
| A	src/lib/suffixarrays/ESA.h
| A	src/lib/suffixarrays/ErrorCode.h
| A	src/lib/suffixarrays/ExpDecayWeight.cpp
| A	src/lib/suffixarrays/ExpDecayWeight.h
| A	src/lib/suffixarrays/I_LCPFactory.h
| A	src/lib/suffixarrays/I_SAFactory.h
| A	src/lib/suffixarrays/I_WeightFactory.h
| A	src/lib/suffixarrays/InductionSort.cpp
| A	src/lib/suffixarrays/InductionSort.h
| A	src/lib/suffixarrays/IntroSort.h
| A	src/lib/suffixarrays/KSpectrumWeight.cpp
| A	src/lib/suffixarrays/KSpectrumWeight.h
| A	src/lib/suffixarrays/LCP.cpp
| A	src/lib/suffixarrays/LCP.h
| A	src/lib/suffixarrays/MSufSort.cpp
| A	src/lib/suffixarrays/MSufSort.h
| A	src/lib/suffixarrays/SConstruct
| A	src/lib/suffixarrays/Stack.h
| A	src/lib/suffixarrays/W_kasai_lcp.cpp
| A	src/lib/suffixarrays/W_kasai_lcp.h
| A	src/lib/suffixarrays/W_msufsort.cpp
| A	src/lib/suffixarrays/W_msufsort.h
|  
* commit d7826cdd3b5590962e4fee6c443b3ecf7eab6c54
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 10 09:57:50 2006 +0000
| 
|     +make use of templates wherever possible,
|     	this removes all the {Byte,Char,Word,Real}Kernel* fils
| 
| M	src/ChangeLog
| M	src/README.developer
| M	src/TODO
| M	src/classifier/svm/SVM.i
| M	src/features/CharFeatures.h
| M	src/features/RealFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.h
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| D	src/kernel/ByteKernel.h
| D	src/kernel/ByteKernel.i
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| D	src/kernel/CharKernel.h
| D	src/kernel/CharKernel.i
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianKernel.i
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| D	src/kernel/RealKernel.h
| D	src/kernel/RealKernel.i
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| D	src/kernel/ShortKernel.h
| D	src/kernel/ShortKernel.i
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.i
| D	src/kernel/WordKernel.h
| D	src/kernel/WordKernel.i
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
|  
* commit cfe4d07b0135802e98a8ecfd0bb8d25d717a063c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Oct 8 15:11:33 2006 +0000
| 
|     +swig Makefile fixes
| 
| M	src/Makefile
| M	src/features/Alphabet.i
| M	src/features/RealFeatures.i
|  
* commit 0082e2ad1deb5f4ca0cbb1e0122894cca3ffb51b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 7 22:59:51 2006 +0000
| 
|     +really introduce shrinking
|     +make the multiple svms example work again w/ swig
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/GaussianKernel.i
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/RealKernel.h
| M	src/kernel/RealKernel.i
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleKernel.i
|  
* commit f6a9be2521a107efeb857198cb50b285a6348825
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Oct 7 09:30:16 2006 +0000
| 
|     + option to disable shrinking in svm training
| 
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/Kernel.i
|  
* commit cd654e05b9ebf010c967e96008d35efb43b44d0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 17:38:43 2006 +0000
| 
|     +forgot the alphabet for swig
| 
| A	src/features/Alphabet.i
|  
* commit 5eff2b2d29c21299cb3aac3937b11c27e9af890f
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 16:38:32 2006 +0000
| 
|     fixed bugs in mindy conversion routines
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
|  
* commit 03bf2481569df488a459c81f05e4da25567158c1
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 16:04:04 2006 +0000
| 
|     templates to support various conversions, e.g. string byte to string ulong or string char to string word, or or or...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit a8788dbbb79f66eeba17e8c67e349dadc535b3e6
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Fri Oct 6 15:02:38 2006 +0000
| 
|     added matlab support byte matrices and cell arrays of bytes
| 
| M	src/guilib/GUIMatlab.cpp
|  
* commit be8c780b57189a230d1ac6e54906f6fb074af675
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 14:48:04 2006 +0000
| 
|     +really use alphabet for byte features
|     +freak out w/ swig
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/Trie.h
| M	src/lib/Trie.i
| M	src/lib/common.i
|  
* commit 605752f8e664084f1b86ba23f6198ceec33f87fc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 14:38:58 2006 +0000
| 
|     +byte features now also have an alphabet
| 
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
|  
* commit 912a2c07985f24e8eb905b114c61d937efdfb223
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 09:26:15 2006 +0000
| 
|     +optional zero terminate the strings again as sscanf fails if we don't
| 
| M	octave/examples/spec_kernel.m
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 3e36298c93372e7e7b5dc61abe6129f87c5a889e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Oct 6 08:58:39 2006 +0000
| 
|     + make getstring function not use mxGetString as it is locale sensitive and
|     might screw up no ascii (0x80-0xff) chars, but do it manually instead. On
|     the way I've done some input sanitizing (no more buffer overflows as we now
|     use strncmp & friends everywhere + no more strlen). this also save 1 byte
|     per string in stringfeatures and has different code for char matrices too
|     (testme!)
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 860996892462fe2d2823ce19737c2a2fc54f01ab
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 5 16:20:45 2006 +0000
| 
|     this should now really fix the 8bit alphabet case
| 
| M	src/features/Alphabet.cpp
| M	src/features/Alphabet.h
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
|  
* commit 54ad27d16afcc51d244b2320ef10e2e546d747ea
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Oct 5 08:38:39 2006 +0000
| 
|     hopefully fixes spec* kernels for too long strings
| 
| M	src/features/Alphabet.cpp
| M	src/features/StringFeatures.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 9e268814a51e6c91c5a2e6e74c0c6a93f0b11ee4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Oct 4 12:14:35 2006 +0000
| 
|     gf( -> sg(
| 
| M	matlab/examples/svmlight_hang_test.m
| M	matlab/examples/test_combined2.m
| M	matlab/examples/test_custom_kernel.m
| M	matlab/examples/test_hmm_matlab.m
| M	matlab/examples/test_kernel_optimization.m
| M	matlab/examples/test_linadd.m
| M	matlab/examples/test_matlab_interface.m
| M	matlab/examples/test_mkl.m
| M	matlab/examples/test_mkl_svr_wrapper.m
| M	matlab/examples/test_rbf_kernel.m
| M	matlab/examples/test_regression.m
| M	matlab/examples/test_regression_linadd.m
|  
* commit 96efdf50b01261214bbe344d01221fe9ea100932
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Oct 3 21:21:48 2006 +0000
| 
|     + for very long repetitive strings INT as result might not be enough (overflow)
|     	-> make it a DREAL
| 
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
|  
* commit 6a2b5dc9cbab0e6a983e51a4833e8629f5fefcef
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Mon Oct 2 20:40:33 2006 +0000
| 
|     Fixed two bugs in the new trie code related to uninitialized variables.
|     Gu
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/lib/Trie.cpp
|  
* commit e1cffa13b5cd8ac0185f125f51b8db3c55c30eb8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 13:23:44 2006 +0000
| 
|     move trie to lib (to list & dynarray)
| 
| D	src/kernel/Trie.cpp
| D	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/lib/Trie.cpp
| A	src/lib/Trie.h
| A	src/lib/Trie.i
|  
* commit 4b14a3156e97c55c971e6ca6f062ebe4de1fb44d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 13:07:58 2006 +0000
| 
|     + really learn to the set accuracy svm_epsilon, works with rbf/ wds+linadd /wds-linadd
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 2250467da028d3d4c08be93bb934a9f9c5a7d2dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Oct 2 10:06:49 2006 +0000
| 
|     fully screw svm light
| 
| M	src/classifier/svm/SVM_light.cpp
|  
* commit 3e35a185d1f978262b13c8a090a542de756791e5
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:57:38 2006 +0000
| 
| D	src/kernel/WeightedDegreeCharKernel.cpp_orig
| D	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 5fab97d11fe1b754750df15cb205a78bf6e7e478
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:57:07 2006 +0000
| 
|     Major change in Weighted Degree kernel (experimental):
|     
|     I moved all the trie-related code a separate class CTrie.
|     In principle, nothing should change, but I did not try it..
|     
|     Gu
| 
| M	src/kernel/Trie.cpp
| M	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp_orig
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 709ad921ef958e938583c0a1f54037bb1c1ecd83
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Sep 29 16:46:17 2006 +0000
| 
| A	src/kernel/Trie.cpp
| A	src/kernel/Trie.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| A	src/kernel/WeightedDegreeCharKernel.cpp_orig
| M	src/kernel/WeightedDegreeCharKernel.h
| A	src/kernel/WeightedDegreeCharKernel.h_orig
|  
* commit 6f3d4311cd2bb4ee23fe6ebe3a63e8fcc71a0f0e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 14:22:31 2006 +0000
| 
|     +workaround for broken powl() (powl is crashing on congo!!!)
| 
| M	src/features/StringFeatures.h
| M	src/lib/Mathmatics.h
|  
* commit 7f5a0a875a5b3367d50d2ac438a26d21f9b8ab5c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 14:15:38 2006 +0000
| 
|     +fail on unknown alphabet
| 
| M	src/features/Alphabet.cpp
|  
* commit 2248a7ca609d04ad0e3eb5d7bb2ca2052819558f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 29 12:15:49 2006 +0000
| 
| M	src/configure
|  
* commit 61ab285dc1be9c983cf93517e8ce68d8099b8129
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Sep 24 19:21:03 2006 +0000
| 
|     +this *should* fix the scoring computation function
| 
| M	octave/examples/wds_kernel.m
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit c023b0e6480ed1fe71c0c79db64e4cb63d07f128
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 22 15:12:42 2006 +0000
| 
| A	matlab/examples/test_one_class_svm.m
| M	octave/examples/wds_kernel.m
|  
* commit 87d23fdd5df4acc6f94059d59cc001db8b22eb22
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 22 14:47:15 2006 +0000
| 
|     + LIBSVM_ONECLASS
| 
| A	src/classifier/svm/LibSVM_oneclass.cpp
| A	src/classifier/svm/LibSVM_oneclass.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/kernel/Kernel.cpp
| M	src/lib/common.h
|  
* commit acbe952e26d075f162b2ade77d418b2e2706d3bf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 19:44:45 2006 +0000
| 
|     +cell array support in octave (strings of different length :)
| 
| M	src/guilib/GUIOctave.cpp
|  
* commit 0bd5d287242c8ba4aa925143aa3ed337a85e5d43
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 16:23:07 2006 +0000
| 
|     +configure now checks for math, posix threads, atlas/lapack, readline
|     +compile fixes for R & python, the RAW alphabet type is now RAWBYTE
|     (as it was conflicting with R)
| 
| M	src/classifier/svm/LibSVM.h
| M	src/configure
| M	src/features/Alphabet.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/common.h
|  
* commit 55f1ce311427fadaec2f8bb1b40fc6df99318f30
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 15:01:34 2006 +0000
| 
| M	src/configure
|  
* commit 9a6ad82a59494ef67292fe1ca3712dd174300bb0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 12:36:10 2006 +0000
| 
| M	src/configure
|  
* commit b928e26764f7480f8293a3fb31a94d94aac83df3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 11:45:10 2006 +0000
| 
| M	src/configure
|  
* commit f067a85cbf58ad9ec61e031c1fcec351682db99b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 11:42:10 2006 +0000
| 
|     further configure updates / more docu in INSTALL
| 
| D	src/.cpuinfo.c
| M	src/INSTALL
| M	src/configure
|  
* commit 1c9f6db22cda00f0d57e3361ce6ec5dfe8a7e4ed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Sep 20 08:30:12 2006 +0000
| 
|     further configure fixes ...
| 
| M	src/.cpuinfo.c
| M	src/configure
|  
* commit 7ca9733491185d6d84c930d98030e5d381e38c63
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 18 10:42:20 2006 +0000
| 
|     +make install
|     +make -C src install DESTDIR=$(pwd)/debian/
|     +fixed name for binary
| 
| M	src/Makefile
| M	src/configure
|  
* commit 521dc18f0eb96cbc043603d166995d48a51d801f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 18 09:51:55 2006 +0000
| 
|     This *should* fix kernel cache stuff for svmlight:
|     
|     +kernel cache indices are now checked to fit in KERNELCACHE_IDX type
|     	an assertion is thrown if not
|     +kernel cache is reduced to totdoc*totdoc*sizeof(KERNELCACHE_ELEM) if larger
|     +KERNELCACHE_IDX is now LONG again, access operations to the cache buffer do a
|     	cast to KERNELCACHE_IDX, while the cache lines are limited to INTs only
|     	(i.e. caching max ~2^31 cache lines (~2^62 elements) is possible)
| 
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/common.h
|  
* commit c7cacd29301e6882fc14949789338a8e86bcf5b6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:49:32 2006 +0000
| 
| M	octave/examples/wds_kernel.m
|  
* commit 928e01981775ea1b6ebf8bb3310261592801d677
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:34:02 2006 +0000
| 
|     make configure work when $INCLUDES / $LIBS are empty
| 
| M	src/configure
|  
* commit 38f81234c036769fd578aaf96e5914983dca32a0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:27:28 2006 +0000
| 
|     + compile fixes for octave
|     + modify configure to obey INCLUDES/LIBS environment variables as well as
|      --libs --includes options
|     + fix compilation on g++-4.1.2
|     + note the GPL exception in LICENSE (i.e. when compiled with --enable-svm-light binary is under LICENSE.SVMlight)
| 
| M	src/ChangeLog
| M	src/LICENSE
| M	src/configure
| M	src/features/StringFeatures.h
| M	src/guilib/GUIOctave.cpp
| M	src/lib/Mathmatics.h
|  
* commit 6905ef1d326a3b5792ae60c965960f558d41bb45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Sep 11 09:21:57 2006 +0000
| 
|     + wds example update (to use get_WD_scoring)
| 
| M	matlab/examples/test_svmlight_libsvm.m
| M	octave/examples/wds_kernel.m
|  
* commit 2b1855df87d1dff7c86c8f1b65940fd9075021c5
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Sep 6 10:28:06 2006 +0000
| 
|     extended Mindy support:
|     (a) embedding function: count, frequency, binary
|     (b) similarity measures: see sm.c in mindy distribution
|     (c) parameters for measures: kernel width, minkowski k, etc...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit f1eb64d22492e44b5bec3727e040543133248d0b
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 1 13:06:33 2006 +0000
| 
| M	octave/examples/wd_kernel.m
| M	octave/examples/wds_kernel.m
|  
* commit 5c74487e887a66201288766a1fedb28c2e1ca0b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Sep 1 00:08:29 2006 +0000
| 
|     + WD und WD-Position kernel scoring functions -> gibt saucoole positionsgewichtungen - nieder mit MKL!
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit f5348337d193918a3034dbae0e87e30d352db13f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 21:55:50 2006 +0000
| 
|     +support higher order scoring info
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 04edab7a7bfda0f8c235a57b0206276eb923c801
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 20:56:54 2006 +0000
| 
|     + now alphabets are handled via the CAlphabet class,
|     + stringfeatures now require a alphabet name
|     + fixed sorting function w/ ULONGs (bug might have occured
|     		with datatypes above DREAL)
|     + updated copyright info
| 
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpdtsolve.h
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/gpm.h
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/fibheap.cpp
| M	src/distributions/hmm/fibheap.h
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| A	src/features/Alphabet.cpp
| A	src/features/Alphabet.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseRealFeatures.cpp
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/ByteKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/RealKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/ShortKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SparseRealKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.cpp
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 8aefccf3b6beb20ca1f6721a5484ebf37b89eea7
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 31 12:42:15 2006 +0000
| 
|     debugging...
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/StringFeatures.h
|  
* commit 0d78cd95f499b801c6bc4525bc8c2ec6d3a013b5
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Thu Aug 31 11:51:01 2006 +0000
| 
|     several minor fixes by sonne
| 
| M	src/classifier/LDA.cpp
| M	src/configure
| M	src/features/MindyGramFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
|  
* commit 546968312c0bf58d9629e50865dd5f9bc8250991
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Aug 31 10:13:18 2006 +0000
| 
|     + first try to get a weighted scoring
| 
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.h
|  
* commit f764df99c3bac3a555a75fee0ba688256acd2bce
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 21:44:04 2006 +0000
| 
|     +hurray, BYTE/RAW features are now working, however as features are now set using
|     
|     sg('set_features', 'TRAIN', x, 'RAW');
|     
|     the alphabet argument should be obsolete from convert, i.e. instead of
|     	sg('send_command', sprintf('convert TRAIN STRING CHAR STRING ULONG RAW 8 7'));
|     one should use
|     	sg('send_command', sprintf('convert TRAIN STRING CHAR STRING ULONG 8 7'));
|     or keep it as extra check - no ???
| 
| M	src/features/CharFeatures.cpp
| M	src/features/StringFeatures.h
|  
* commit 6fd575bb18854ffebcf76044fe76afd50ea03253
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 19:38:22 2006 +0000
| 
|     +LONG is now definitely 64bit
|     +almost all occurances of LONG, long long, long int, long
|     	were converted to INT (as this is enough)
| 
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/distributions/hmm/HMM.cpp
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/RealFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/SimpleFile.h
| M	src/lib/common.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 7a99209508f913d779bc2404ef96369a71121688
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 18:28:07 2006 +0000
| 
|     fixed changes in mindy interface
| 
| M	src/kernel/MindyGramKernel.cpp
|  
* commit e3171f14455e3eb01457ba5bb16a5cb616d9e1f5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 17:47:33 2006 +0000
| 
|     - undo CHAR -> signed char change, as then CHAR* bla = "dfadf" is a nogo on x86
|     - hopefully fix histogram creation (and thus RAW BYTE features) by converting signed -> unsigned
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/lib/common.h
| M	src/lib/io.h
|  
* commit 354cf09d26d7dbf5a69b5015c9a5095308252fc2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 17:03:50 2006 +0000
| 
|     +make CHAR case sensitive and remap function return BYTE (unsigned!!!)
| 
| M	src/features/CharFeatures.h
| M	src/lib/common.h
|  
* commit 0198ce94f8c38c4354a7732d0a4ff9d0e8246472
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 13:04:12 2006 +0000
| 
|     fixed commstring{word|ulong}kernel bugs
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/lib/common.h
|  
* commit 9671ac96a0b55889bcd14f7e0028f1006fe28dc2
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Wed Aug 30 09:10:33 2006 +0000
| 
|     fixed minor bugs in mindy code and did code beautification
| 
| M	src/features/MindyGramFeatures.cpp
| M	src/features/MindyGramFeatures.h
| M	src/kernel/MindyGramKernel.cpp
| M	src/kernel/MindyGramKernel.h
|  
* commit f95d1204efced60badb0626750059350e15c181e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 08:26:52 2006 +0000
| 
|     relabel BYTE -> RAW (due to name clash with featue type..)
| 
| M	src/features/CharFeatures.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/lib/common.h
|  
* commit eb9bb8264c8444876305f4646b1b867b9fda1446
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 30 07:00:12 2006 +0000
| 
|     +support for non DNA (BYTE,PROTEIN,...) alphabet
| 
| M	src/features/CharFeatures.cpp
| M	src/gui/Octave.cpp
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/common.h
|  
* commit 0cdf0e70a796b2acf348a1dc6d4b43d39b9b888d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 29 16:35:01 2006 +0000
| 
|     +ifdef mindy
| 
| M	src/features/StringFeatures.h
| M	src/guilib/GUIKernel.cpp
|  
* commit ffaf11059a4e5476b4e924e754b3ce43def35f4d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Aug 29 15:59:28 2006 +0000
| 
|     +comm word kernel obeys normalization options
| 
| M	src/TODO
| M	src/guilib/GUIKernel.cpp
|  
* commit 428ca165a0d85851d84d2eefe90b0c6ab48c3432
| Author: Konrad Rieck <konrad.rieck@tu-berlin.de>
| Date:   Tue Aug 29 15:55:44 2006 +0000
| 
|     rudimentary interface (features/kernel) to mindy library
| 
| D	src/features/GramFeatures.cpp
| D	src/features/GramFeatures.h
| D	src/features/GramFeatures.i
| A	src/features/MindyGramFeatures.cpp
| A	src/features/MindyGramFeatures.h
| A	src/features/MindyGramFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIKernel.cpp
| A	src/kernel/MindyGramKernel.cpp
| A	src/kernel/MindyGramKernel.h
| A	src/kernel/MindyGramKernel.i
| M	src/lib/common.h
|  
* commit 6f3e00f5ef0303ede4f1c3433ebc657545f7a896
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Aug 25 14:11:34 2006 +0000
| 
|     +konrads mindy lib based n-gram / bag-of-words features (kernel to follow...)
| 
| A	src/features/GramFeatures.cpp
| A	src/features/GramFeatures.h
| A	src/features/GramFeatures.i
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/lib/common.h
|  
* commit cb6d8da3f4818010c17d48265dd31cc637697859
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Aug 9 12:23:14 2006 +0000
| 
|     +new experimental configure (should work on macbook pro's)
| 
| M	src/configure
|  
* commit bca9e6af254468e98a1e1b6e466c132d6e9d8a44
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Aug 6 13:10:12 2006 +0000
| 
|     + spectrum/wd/wds kernel octave/matlab examples
| 
| M	R/sg/inst/doc/sg.pdf
| A	octave/examples/spec_kernel.m
| A	octave/examples/wd_kernel.m
| A	octave/examples/wds_kernel.m
|  
* commit 8db83608d3874bff9da26b42ad08d27e4ac3cb05
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Fri Jul 14 15:16:29 2006 +0000
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 96152baff99ec8582c14f1c34a3056bf16f9bfe2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sat Jul 1 13:46:02 2006 +0000
| 
|     +compile fix for matlab+osx
| 
| M	src/configure
|  
* commit dc6a351d82e641971a7617110654cc257a926cba
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:44:43 2006 +0000
| 
| M	R/sg/DESCRIPTION
|  
* commit eb1062991285674a2e6f268cfb0e98f33d5cd5f2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:16:17 2006 +0000
| 
|     +require only R 2.1
| 
| M	R/sg/DESCRIPTION
|  
* commit 09bc245a38b5c9a9f9e5a3b9c8ace1f4d8d30918
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 22:00:08 2006 +0000
| 
| M	R/Makefile
|  
* commit ccfa070cf4ebe37836c84b236801287974561277
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 21:55:22 2006 +0000
| 
| M	R/Makefile
|  
* commit a10295949f9371beb331c1856aefb642568a36ff
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 21:48:41 2006 +0000
| 
|     +R install fix
|     +svm light warning
| 
| M	R/Makefile
|  
* commit ce9c2f4cee0858c0853a5bb555bec7f97f0c41a7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 14:29:41 2006 +0000
| 
| M	Makefile
|  
* commit 8c5d98cc5746dbbfda33c25be5a47f6ce747915f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 14:26:30 2006 +0000
| 
| M	src/ChangeLog
|  
* commit 362328aa8f365ece3ad1cd2e3671ef2af94cb402
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 30 08:52:59 2006 +0000
| 
|     + example on how to compute entropy / relative entropy with 'linear hmms == markov chains'
| 
| A	matlab/examples/entropy.m
|  
* commit ec911dd96318406b9b858e5554794958be409a61
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 22:15:19 2006 +0000
| 
|     the wd kernel test example
| 
| A	matlab/examples/test_wd_kernel.m
|  
* commit a346cab65a9369e51e3afcc296aaaf76b33c2eed
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 22:14:14 2006 +0000
| 
|     +fix entropy function
|     +use SLOWBUTMEMEFFICIENT in reactivate_inactive_examples
|     +fix: use normalization when requested w/ WDPosition kernel
|     +fix: shift of length 0 resulted in unitialized vec array (WDPosition kernel)
|     +tons of fixes in WD kernel:
|      1. linadd should work again
|      2. batch computation implemented and works
|      3. mkl does at least not crash and leads to same objective value (but output on test set is different)
|      4. used remap() function w/ alphabet from character features (should speed up a lot)
|      5. removed has_floats from Trie structure (saves some mem)
|     
|     however WD+mismatch functions seem to not work, MKL w/ WD shift kernel might work but need example!
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit cccb699aa4c5fe2d1b0c0d7515fbac32510e80e1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 29 08:11:22 2006 +0000
| 
| M	src/kernel/WeightedDegreeCharKernel.cpp
|  
* commit e73f7d136ef490bbcb704f1292dd98520ca763ca
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 28 23:40:24 2006 +0000
| 
|     good news: this kernel is now really really working (except for maybe MKL -
|     		i.e. someone needs to test it w/ MKL!), however it works with NON CONSTANT
|     	SHIFTS, with and w/o batch computation, with FASTBUTMEMHUNGRY/SLOWBUTMEMEFFICIENT
|     	the added (advanced!) example shows the usage. note: batch computation is emulated
|     	when the combined kernel is used (by using linadd/ if that is not available linadd
|     			is emulated)
| 
| M	matlab/examples/test_wdshift_kernel.m
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 2347d71a839fecb6b5dbd4beb05b0ae7f49abccf
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 28 21:27:21 2006 +0000
| 
|     +LONGDREAL -> LONGREAL
|     +call delete_optimization after svm training, this fixes the
|     	'zero output on when init_kernel_optimization is forgotten' issue
| 
| M	src/classifier/svm/SVM_light.cpp
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/WordMatchKernel.cpp
| M	src/lib/common.h
|  
* commit 2a62f1f5740d6881902b696ab234bd47f09a3079
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 26 23:12:17 2006 +0000
| 
| D	python/examples/multi_svm.py
| A	python/examples/multiple_svms_matplotlib.py
|  
* commit a52560720e43e21e3fc35a49371e0399bd180502
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 18:20:56 2006 +0000
| 
|     renamed file
| 
| D	python/examples/mit_bunt_und_so.py
| A	python/examples/multi_svm.py
|  
* commit a9306d497ecc03d67d7a2019be32b8951a77b9f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 26 18:17:14 2006 +0000
| 
|     - mpisvm
|     + lots of documentation ...
| 
| M	doc/Makefile
| A	doc/manual/Makefile
| A	doc/manual/R.txt
| A	doc/manual/cmdline.txt
| A	doc/manual/commands.txt
| A	doc/manual/faq.txt
| A	doc/manual/installation.txt
| A	doc/manual/interfaces.txt
| A	doc/manual/introduction.txt
| A	doc/manual/license.txt
| D	doc/manual/manual.txt
| A	doc/manual/matlab.txt
| A	doc/manual/octave.txt
| A	doc/manual/overview.txt
| A	doc/manual/python.txt
| M	src/configure
|  
* commit 97a41c693313021d9b387baff20139203d6f962f
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 17:55:36 2006 +0000
| 
|     script is working
| 
| M	python/examples/mit_bunt_und_so.py
|  
* commit 2a2dac399f042b18ff5d8ee9b47b598dfadb7e82
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 14:43:57 2006 +0000
| 
|     +swig svm
| 
| M	Makefile
| M	R/Makefile
| M	R/sg/DESCRIPTION
| M	python/examples/mit_bunt_und_so.py
|  
* commit 03e3564aef073c8b6c090a2ad29f8e585135d932
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 26 14:16:47 2006 +0000
| 
|     corrected some stuff
| 
| M	python/examples/mit_bunt_und_so.py
|  
* commit 23c1fc57d86e58935dfe7838e8570b5120a09888
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Sun Jun 25 19:58:42 2006 +0000
| 
|     experimental code for protein sequences ...
|     G
| 
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
|  
* commit 8e16eb40eb59c0254824165fee32f2de52e87320
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 25 14:12:18 2006 +0000
| 
|     + compile fix for cygwin W32 arch
| 
| M	src/lib/Mathmatics.cpp
|  
* commit 7c84ddd319488c188c5e79b02ee44da972c7412c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 16:28:05 2006 +0000
| 
| A	Makefile
| M	doc/Makefile
|  
* commit 4bb981f67355441bdd052007de9498a7c942a8b6
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 16:04:44 2006 +0000
| 
|     added example
| 
| A	python/examples/mit_bunt_und_so.py
|  
* commit bae360d3e35535dab92210b1576e6f9ef48c1107
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:16:36 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit dcf5ef4b4ffe8b0b58adc82647d3e273b3b4ec45
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:10:46 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit ca92b21a54d7ffce3b8c8dfacdaa970fab4109f0
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 15:04:19 2006 +0000
| 
| M	python/examples/multiple_svms.py
|  
* commit 5a54a793d65626f21c226ab8cb338907ba25bd4f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:58:55 2006 +0000
| 
|     +wd kernel
| 
| M	python/examples/multiple_svms.py
| A	python/examples/wd_kernel.py
|  
* commit a1c75548daa18a00d22ddb4c5afceb47f1df924f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:55:07 2006 +0000
| 
| M	src/kernel/GaussianKernel.i
| M	src/kernel/RealKernel.i
| M	src/kernel/SimpleKernel.i
|  
* commit 29153c2a1dd11460980b3517f5de0059f7ae672f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:38:17 2006 +0000
| 
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
|  
* commit b81bed48fd092872d03ddcf6ebba178730c612b5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:28:40 2006 +0000
| 
| M	src/classifier/svm/LibSVM.i
| M	src/classifier/svm/SVM_light.i
|  
* commit 5442abcdbd6dbe8285a8c3f0ffdde6433b47ee29
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:26:15 2006 +0000
| 
| M	src/features/RealFeatures.i
|  
* commit 0723cc798c643fb660af0e8acd6c6354c37c90b8
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 14:22:14 2006 +0000
| 
|     just cleanups
| 
| M	src/features/CharFeatures.i
| M	src/features/RealFeatures.i
| M	src/features/SimpleFeatures.i
| M	src/lib/common.i
|  
* commit 9b8ad6c0196b3c378aee5a6d3ef25c3a9e4a0b3c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:15:28 2006 +0000
| 
|     changed include order
| 
| M	src/features/RealFeatures.h
|  
* commit c4462c77910a533129b13eb744830d3d7c84cb10
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:12:59 2006 +0000
| 
|     modified
| 
| M	src/kernel/GaussianKernel.i
|  
* commit 84eff75f2bee3b854e03afb7cf23d476b795ac1e
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:12:28 2006 +0000
| 
|     i
| 
| M	src/features/RealFeatures.i
|  
* commit 11c01fbb2f8cb3ce7a53f26a46a1691e334921fb
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:10:25 2006 +0000
| 
|     added new submodule
| 
| M	src/features/__init__.py
|  
* commit becddb2257b9883ba8c53768af0b274edd4f1c50
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 14:05:54 2006 +0000
| 
|     modified RealFeatures
| 
| M	python/examples/multiple_svms.py
|  
* commit 39d7fc616a7204bf52db847c2cc5e2761d5d5aeb
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 13:55:34 2006 +0000
| 
|     added %template directive to solve the issublcass(RealFatures,SimpleFeatures) problem
| 
| M	src/features/SimpleFeatures.i
|  
* commit fe77eb619d793c29d537b4290b9ffe720ca3a04c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 13:39:43 2006 +0000
| 
|     combined interface file for Features, SimpleFeatures and RealFeatures.
| 
| A	src/features/allFeatures.i
|  
* commit fa92b44d06ce7d2f5b3f5a0f0b25257ad247651c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 12:20:06 2006 +0000
| 
|     added example
| 
| M	python/examples/fabio_test.py
| A	python/examples/multiple_svms.py
|  
* commit 82c2503e67498e14bc92ff74beeff9c245fffd5d
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 12:19:57 2006 +0000
| 
|     added GaussianKernel interface
| 
| M	src/features/Features.i
| M	src/features/RealFeatures.i
| M	src/features/__init__.py
| M	src/kernel/GaussianKernel.i
| M	src/kernel/__init__.py
|  
* commit 98065dd579afdb1dba2ce64910f031cffb213157
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 23 10:22:30 2006 +0000
| 
|     new constructor added
| 
| M	src/features/RealFeatures.i
|  
* commit 54977c060a2521f73d90715d184eacf23a37d9fe
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 10:20:29 2006 +0000
| 
| M	src/features/RealFeatures.h
|  
* commit 6ae075c6cc3a5b3365c575faac9e80e6065b594e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 23 10:16:57 2006 +0000
| 
|     + realfeatures
| 
| M	src/features/RealFeatures.h
|  
* commit af3b9744f80964bb07195701514d98605b9ed64e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 22 14:15:51 2006 +0000
| 
| M	src/lib/common.i
|  
* commit 6ed154f826f11c66c79c20405c9e8c79b847c9e7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 13:17:50 2006 +0000
| 
|     added include common.i
| 
| M	src/features/CharFeatures.i
|  
* commit e7123b27007c06d4826a6781cf7c23aab7efc506
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 13:00:50 2006 +0000
| 
|     added module init
| 
| A	src/lib/__init__.py
|  
* commit ff92b82f0f86447933d8b85c39b075c863d422ae
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 12:53:41 2006 +0000
| 
|     added some stuff
| 
| M	src/features/CharFeatures.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/lib/common.i
|  
* commit 23ecfd574c314096fb64b8a46df2999932df7ab3
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 09:37:34 2006 +0000
| 
|     modified common interface
| 
| M	src/lib/common.i
|  
* commit cfca0278c6f9e2b45ea0e401459ccf8542d97a00
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 22 09:11:09 2006 +0000
| 
|     removed swigfiles dir
| 
| M	src/classifier/svm/SVM_light.i
| M	src/lib/common.i
| D	src/swigfiles/common.i
|  
* commit 340283f4a4de2169ad70680a3d4710db2f6cc946
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 17:16:47 2006 +0000
| 
|     now on the web :)
| 
| M	octave/examples/hmm.m
|  
* commit 44ed13fce633c850d8a6a51f6fc825f08316875c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 17:00:44 2006 +0000
| 
|     +hmm example working in octave / several hmm fixes + svm_classify_example ...
| 
| A	octave/examples/hmm.m
| M	src/gui/Octave.cpp
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/kernel/CommWordStringKernel.h
| M	src/lib/Mathmatics.h
|  
* commit 33d3b243df19a7d2bfe2e7d8630bffdf2f6962b1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 16:05:28 2006 +0000
| 
|     + fixed hmm w/ matlab
|     + nice hmm matlab example
| 
| A	matlab/examples/hmm.m
| M	src/distributions/hmm/HMM.cpp
| M	src/gui/Matlab.cpp
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
|  
* commit 7fb481720dad9641b9883c4d84834be09df62157
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jun 21 14:44:04 2006 +0000
| 
|     fixed even some more lib/common.i issues
| 
| M	src/features/Labels.i
| M	src/features/SimpleFeatures.i
| M	src/kernel/CharKernel.i
| M	src/kernel/SimpleKernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit bac04e7b0ecff6a543d9065295a40b32ef8fa61c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Wed Jun 21 14:42:08 2006 +0000
| 
|     fixed some include paths
| 
| M	src/classifier/svm/SVM.i
| M	src/classifier/svm/SVM_light.i
| M	src/features/CharFeatures.i
| M	src/features/Features.i
| M	src/kernel/Kernel.i
| M	src/lib/common.i
|  
* commit ce90bc0fa97feeaad2180a051e7aa108ccf0ea3c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 11:02:11 2006 +0000
| 
|     +octave set/get_features fixes
|     +examples for svm/svr w/ octave
| 
| M	octave/examples/svm_classification.m
| M	src/configure
| M	src/guilib/GUIOctave.cpp
|  
* commit 0830f4b32410eb4a24dccea08ea39da58c614997
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 07:26:44 2006 +0000
| 
|     + waiting for octave...
| 
| A	octave/examples/svm_classification.m
| A	octave/examples/svr_regression.m
|  
* commit 13d74d59e62f90172ce650049e461fd3ed83f95f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 06:59:55 2006 +0000
| 
|     + matlab examples
|     + update doxygen generator file
| 
| M	R/Makefile
| D	R/examples/classification.R
| D	R/examples/regression.R
| A	R/examples/svm_classification.R
| A	R/examples/svr_regression.R
| M	doc/doxygen/Doxyfile
| A	matlab/examples/svm_classification.m
| A	matlab/examples/svr_regression.m
| M	matlab/examples/test_classifier.m
|  
* commit cb3f05eb2b94344151e4d4b3181aa400c6bc1f6d
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Wed Jun 21 05:21:53 2006 +0000
| 
|     c -> cpp
| 
| D	src/lib/lapack.c
| A	src/lib/lapack.cpp
|  
* commit 707a107a6c61162419cf39ad3a930908d5c0eec2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 20 21:28:24 2006 +0000
| 
|     + use extern "C" for lapack functions
|     + simplified python svm/svr examples -> now on webpage
| 
| A	python/examples/svm_classificaton.py
| A	python/examples/svr_regression.py
| D	python/examples/test_mpdsvm.py
| D	python/examples/test_python.py
| M	src/lib/lapack.c
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit f51cec41dc212d99446e525f16b0cde64831cda9
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Tue Jun 20 18:05:49 2006 +0000
| 
|     + fix c++ compiler detection on macs
|     + various workarounds for blas/lapack on macosx ... it does not work :/
|     - disable lapack on macs and print a warning
| 
| M	src/classifier/svm/pr_loqo.cpp
| M	src/configure
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/io.h
| M	src/lib/lapack.c
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit 6d94efdd84722b713ee5e2b6a228508ce9024ab5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 19 18:35:16 2006 +0000
| 
|     +further lapack osx compilation fixes
| 
| M	src/lib/Mathmatics.cpp
| M	src/lib/lapack.h
| M	src/preproc/PCACut.cpp
|  
* commit 5ec335a968ad401c3266c139c869fd0f954a3b0c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 16:02:38 2006 +0000
| 
|     modified example
| 
| M	python/examples/fabio_test.py
|  
* commit 4a394a75a4ebf2d11ddc4235530766217bd9aa5c
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:26:30 2006 +0000
| 
|     modified example
| 
| M	python/examples/fabio_test.py
| A	python/examples/fileA.dna
| A	python/examples/fileB.dna
|  
* commit a233eb43a1ddbaec3667027e661301c3c67ca998
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:20:34 2006 +0000
| 
|     centralized swig helper datastructures in common.i
| 
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
| M	src/lib/common.i
|  
* commit 262a2563b64e42f126de8850bd3050b6fcf4bee8
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Mon Jun 19 15:03:19 2006 +0000
| 
|     cpointer added to none dependend files
| 
| M	src/.generate_link_dependencies.py
|  
* commit a74a97ea2f17cfa5c22061faa1288fd6a3624c75
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 19 13:03:46 2006 +0000
| 
|     + allow compiling w/ lapack/blas on osx
|     + workaround clapack_dpotrf not beeing defined (needs check!!)
| 
| M	src/Makefile
| M	src/classifier/LDA.cpp
| M	src/configure
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
|  
* commit 8ea890eb48199781d164d9b6a2c92902310f2a15
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:13:53 2006 +0000
| 
| D	src/d-bug.py
|  
* commit 6ad121c884a7791c72b7d88af2b17d7f20e0cd6f
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:02:29 2006 +0000
| 
|     +forgotten necessary files
| 
| A	src/classifier/svm/gpdtsolve.h
| A	src/classifier/svm/gpm.h
|  
* commit 4024dbb051ee8f1a883627dc3fd1abd5cd5085d6
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 18 09:01:36 2006 +0000
| 
|     using swig one can now train a svm like this:
|     
|     import kernel.WeightedDegreeCharKernel as wd
|     import features.CharFeatures as cf
|     import features.Labels as lab
|     import classifier.svm.SVM_light as svm
|     
|     dA = wd.doubleArray(5)
|     dA[0] = 0.167
|     dA[1] = 0.25
|     dA[2] = 0.5
|     dA[3] = 0.25
|     dA[4] = 0.167
|     f=cf.CCharFeatures(cf.DNA,'ACGTAAACCGGT',4,3)
|     kernel = wd.CWeightedDegreeCharKernel(f,f,10,dA,2,0,True,False,1)
|     
|     trainlabels = lab.CLabels(3)
|     trainlabels.set_int_label(0,1)
|     trainlabels.set_int_label(1,-1)
|     trainlabels.set_int_label(2,-1)
|     
|     s = svm.CSVMLight()
|     s.set_labels(trainlabels)
|     s.set_kernel(kernel)
|     result = s.train();
|     print result
| 
| M	src/Makefile
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/configure
| M	src/distributions/Distribution.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CharFeatures.i
| M	src/features/SimpleFeatures.h
| M	src/features/SimpleFeatures.i
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.i
| D	src/lib/versionstring.i
|  
* commit 95d5b826bdc05c9abebfd8152697c64c5530f316
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 16:48:18 2006 +0000
| 
|     updated a few interfaces
| 
| M	src/classifier/svm/SVM.i
| M	src/kernel/Kernel.i
| M	src/kernel/WeightedDegreeCharKernel.i
| M	src/kernel/WeightedDegreePositionCharKernel.i
|  
* commit 6e1e7db2de72a5d6c7f852427394e322bdb907b2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:39:31 2006 +0000
| 
|     +make swigclean
| 
| M	src/Makefile
|  
* commit b5d92824578b1edf90988c93e8b57914f5b03fb7
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:22:07 2006 +0000
| 
|     yet another python build fix
| 
| M	src/configure
|  
* commit e480afe90e26af49c2a5a237b7397bc8fb846adc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 16:07:27 2006 +0000
| 
| M	src/configure
|  
* commit 0ac9055b268fd0e8bfa0f8ecd1e79d1fc418c028
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 15:58:58 2006 +0000
| 
|     +fix linking in python interface, disable svm light msg for now
| 
| M	src/configure
|  
* commit d134768269c2d07825bb5d2764be35a405897002
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 15:18:40 2006 +0000
| 
|     +check entries in .svn/ and always update versionstring if a newer entry file exist
| 
| M	src/Makefile
|  
* commit 38aa4bb95a391cc35798277dfb70f1550b2887e3
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:27:09 2006 +0000
| 
|     - make doc
| 
| M	src/Makefile
|  
* commit e52da86319cffb42bf3d3e00167e7f1e2b9bf0b4
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:10:45 2006 +0000
| 
|     +make manual
| 
| A	doc/Makefile
|  
* commit ec16325bff2505215c8b54736034ec69f9da6e46
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 14:09:52 2006 +0000
| 
| A	doc/manual/manual.txt
| D	doc/user_manual/manual.txt
|  
* commit f40de6c1d8995bf3af371446cf7cca126868ae58
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 13:16:21 2006 +0000
| 
| M	R/Makefile
|  
* commit 221dbb1c2655299c196edb1e57be45cd23b3511a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 12:27:54 2006 +0000
| 
|     +updated the example to the one used in the talk
|     +now R sources should really install
| 
| M	R/Makefile
| M	R/configure
| M	R/examples/hmm.R
| M	R/sg/inst/doc/sg.pdf
| M	src/Makefile
| M	src/configure
|  
* commit 8d425efb1954297faadf5ee1819473109353ab40
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:51:20 2006 +0000
| 
|     -ccache
| 
| M	R/examples/classification.R
| M	R/examples/hmm.R
| M	R/sg/inst/doc/sg.pdf
| M	src/configure
|  
* commit 72030c4c4c335aea5d3fff7c94458ba88c90e796
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 08:40:18 2006 +0000
| 
|     added "cp TODO LICENSE..."
| 
| M	R/Makefile
|  
* commit 8f4dc91ede2dd2c4c6e02f07f4fdb69744f60ca5
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:36:12 2006 +0000
| 
| M	R/sg/inst/doc/sg.pdf
| D	R/sg/tests/test.R
|  
* commit df73dc1a381da2eec22a018133bb05be781c8d01
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:22:02 2006 +0000
| 
| A	R/sg/inst/doc/manual.pdf
| A	R/sg/inst/doc/sg.Rnw
| A	R/sg/inst/doc/sg.pdf
|  
* commit 1a44d6e54b79ab2301bfd46bbd363f90e2d2eaf2
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 08:17:30 2006 +0000
| 
| A	R/sg/demo/00Index
| A	R/sg/tests/startup.R
|  
* commit 84b7157b1302e8f8d90855366a58cf94e63f3cce
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Fri Jun 16 08:13:03 2006 +0000
| 
|     removed gcc --dumpversion
| 
| M	src/Makefile
|  
* commit 79e495e8b6968f032a87952d3320c0c4fa6c9b52
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 07:49:23 2006 +0000
| 
|     - obsolete files in R 2.3
| 
| D	R/sg/INDEX
| D	R/sg/cleanup
|  
* commit 529e787fc0fab41114709b72a1f9ce075450bcfb
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Fri Jun 16 07:48:31 2006 +0000
| 
|     + R vignette
|     + configure option --disable-svm-light
|     + print out warning when confiuring w/ svmlight
| 
| M	R/Makefile
| M	R/README.txt
| M	R/examples/hmm.R
| M	R/sg/DESCRIPTION
| D	R/sg/R_PROFILE.R
| D	R/sg/demo/Rtest.R
| M	R/sg/demo/string_kernel.R
| D	R/sg/demo/test.R
| D	R/sg/demo/test_hmm.R
| D	R/sg/demo/test_hmm_DNA.R
| D	R/sg/install.R
| M	doc/user_manual/manual.txt
| M	src/README
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/configure
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
|  
* commit 45ad75fd062e955e00275414676a5f5a76e806b7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 15:59:28 2006 +0000
| 
|     extended doc
| 
| M	doc/user_manual/manual.txt
|  
* commit cb8b810d1ec27db895fcc3487aa593be1bae2a5a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 15 15:55:45 2006 +0000
| 
|     + documented contributions form joachims, chen lin, smola  etc
|     + create math object to get its constructor called (this screwed
|     		up the HMM since oct-2004) -> HMM training is now working again
|     + get_viterbi_path and other functions for HMM
|     + a running HMM example
| 
| M	R/examples/hmm.R
| M	src/CONTRIBUTIONS
| A	src/ChangeLog
| D	src/HISTORY
| A	src/LICENSE.SVMlight
| M	src/gui/R.cpp
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/lib/Mathmatics.cpp
|  
* commit af33ab6cec70b7731de92cf6fbfbf3de01cfc2a3
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 15:23:21 2006 +0000
| 
|     update manual
| 
| M	doc/user_manual/manual.txt
|  
* commit 10a4251652a6b521c297fd4ad64ff9116b7d4fd7
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 14:38:40 2006 +0000
| 
|     added more text
| 
| M	doc/user_manual/manual.txt
|  
* commit 7afd3127bbcdd24f09669dcd8fa3ed44cef8451b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 11:04:20 2006 +0000
| 
|     first version of the user manual.
| 
| A	doc/user_manual/manual.txt
|  
* commit d83659b316d5f16acf1cbfffdc81428ece770a97
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Thu Jun 15 09:59:54 2006 +0000
| 
|     removed r-project address
| 
| M	R/sg/DESCRIPTION
|  
* commit 39b23d1545ff232416cc8c68ce645f91ffd9ff4c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 15 09:17:54 2006 +0000
| 
|     +a more useful general README, README.developer, LICENSE+INSTALL information
|     +hmm example
|     +make best_path work again
|     +stringfeatures if order == 1 keep number of symbols
|     +some more checks in GUIR
|     +license information as a header to each file
|     +update version information from svn, now sg('get_version') returns svn revision (not time in minutes since 197x)
|     -empty svm directory
| 
| A	R/examples/hmm.R
| M	R/sg/COPYING
| M	R/sg/DESCRIPTION
| M	R/sg/INDEX
| M	src/.version.sh
| A	src/AUTHORS
| A	src/CONTRIBUTIONS
| A	src/INSTALL
| M	src/README
| A	src/README.developer
| M	src/classifier/Classifier.cpp
| M	src/classifier/Classifier.h
| M	src/classifier/KNN.cpp
| M	src/classifier/KNN.h
| M	src/classifier/KernelPerceptron.cpp
| M	src/classifier/KernelPerceptron.h
| M	src/classifier/LDA.cpp
| M	src/classifier/LDA.h
| M	src/classifier/LPM.cpp
| M	src/classifier/LPM.h
| M	src/classifier/LinearClassifier.cpp
| M	src/classifier/LinearClassifier.h
| M	src/classifier/Perceptron.cpp
| M	src/classifier/Perceptron.h
| M	src/classifier/PluginEstimate.cpp
| M	src/classifier/PluginEstimate.h
| M	src/classifier/svm/CPLEXSVM.cpp
| M	src/classifier/svm/CPLEXSVM.h
| M	src/classifier/svm/GPBTSVM.cpp
| M	src/classifier/svm/GPBTSVM.h
| M	src/classifier/svm/KerthiPrimalSVM.cpp
| M	src/classifier/svm/KerthiPrimalSVM.h
| M	src/classifier/svm/LibSVM.cpp
| M	src/classifier/svm/LibSVM.h
| M	src/classifier/svm/MPD.cpp
| M	src/classifier/svm/MPD.h
| M	src/classifier/svm/Optimizer.cpp
| M	src/classifier/svm/Optimizer.h
| M	src/classifier/svm/SVM.cpp
| M	src/classifier/svm/SVM.h
| M	src/classifier/svm/SVM_libsvm.cpp
| M	src/classifier/svm/SVM_libsvm.h
| M	src/classifier/svm/SVM_light.cpp
| M	src/classifier/svm/SVM_light.h
| M	src/classifier/svm/gpdt.cpp
| M	src/classifier/svm/gpdt.h
| M	src/classifier/svm/gpdtsolve.cpp
| M	src/classifier/svm/gpm.cpp
| M	src/classifier/svm/pr_loqo.cpp
| M	src/classifier/svm/pr_loqo.h
| M	src/distributions/Distribution.cpp
| M	src/distributions/Distribution.h
| M	src/distributions/histogram/Histogram.cpp
| M	src/distributions/histogram/Histogram.h
| M	src/distributions/hmm/GHMM.cpp
| M	src/distributions/hmm/GHMM.h
| M	src/distributions/hmm/HMM.cpp
| M	src/distributions/hmm/HMM.h
| M	src/distributions/hmm/HMM_bestpath.cpp
| M	src/distributions/hmm/HMM_bestpath_2struct.cpp
| M	src/distributions/hmm/HMM_bestpath_simple.cpp
| M	src/distributions/hmm/LinearHMM.cpp
| M	src/distributions/hmm/LinearHMM.h
| M	src/distributions/hmm/fibheap.cpp
| M	src/distributions/hmm/fibheap.h
| M	src/distributions/hmm/penalty_info.cpp
| M	src/distributions/hmm/penalty_info.h
| M	src/features/ByteFeatures.cpp
| M	src/features/ByteFeatures.h
| M	src/features/CharFeatures.cpp
| M	src/features/CharFeatures.h
| M	src/features/CombinedFeatures.cpp
| M	src/features/CombinedFeatures.h
| M	src/features/FKFeatures.cpp
| M	src/features/FKFeatures.h
| M	src/features/Features.cpp
| M	src/features/Features.h
| M	src/features/Labels.cpp
| M	src/features/Labels.h
| M	src/features/RealFeatures.cpp
| M	src/features/RealFeatures.h
| M	src/features/RealFileFeatures.cpp
| M	src/features/RealFileFeatures.h
| M	src/features/ShortFeatures.cpp
| M	src/features/ShortFeatures.h
| M	src/features/SimpleFeatures.h
| M	src/features/SparseFeatures.h
| M	src/features/SparseRealFeatures.cpp
| M	src/features/SparseRealFeatures.h
| M	src/features/StringFeatures.cpp
| M	src/features/StringFeatures.h
| M	src/features/TOPFeatures.cpp
| M	src/features/TOPFeatures.h
| M	src/features/WordFeatures.cpp
| M	src/features/WordFeatures.h
| M	src/gui/GUI.cpp
| M	src/gui/GUI.h
| M	src/gui/Matlab.cpp
| M	src/gui/Octave.cpp
| M	src/gui/Python.cpp
| M	src/gui/Python.h
| M	src/gui/R.cpp
| M	src/gui/TextGUI.cpp
| M	src/gui/TextGUI.h
| M	src/guilib/GUIClassifier.cpp
| M	src/guilib/GUIClassifier.h
| M	src/guilib/GUIFeatures.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUIHMM.cpp
| M	src/guilib/GUIHMM.h
| M	src/guilib/GUIKNN.cpp
| M	src/guilib/GUIKNN.h
| M	src/guilib/GUIKernel.cpp
| M	src/guilib/GUIKernel.h
| M	src/guilib/GUILabels.cpp
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIMath.cpp
| M	src/guilib/GUIMath.h
| M	src/guilib/GUIMatlab.cpp
| M	src/guilib/GUIMatlab.h
| M	src/guilib/GUIOctave.cpp
| M	src/guilib/GUIOctave.h
| M	src/guilib/GUIPluginEstimate.cpp
| M	src/guilib/GUIPluginEstimate.h
| M	src/guilib/GUIPreProc.cpp
| M	src/guilib/GUIPreProc.h
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIPython.h
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
| M	src/guilib/GUISVM.cpp
| M	src/guilib/GUISVM.h
| M	src/guilib/GUITime.cpp
| M	src/guilib/GUITime.h
| M	src/kernel/AUCKernel.cpp
| M	src/kernel/AUCKernel.h
| M	src/kernel/ByteKernel.h
| M	src/kernel/CanberraWordKernel.cpp
| M	src/kernel/CanberraWordKernel.h
| M	src/kernel/CharKernel.h
| M	src/kernel/CharPolyKernel.cpp
| M	src/kernel/CharPolyKernel.h
| M	src/kernel/Chi2Kernel.cpp
| M	src/kernel/Chi2Kernel.h
| M	src/kernel/CombinedKernel.cpp
| M	src/kernel/CombinedKernel.h
| M	src/kernel/CommUlongStringKernel.cpp
| M	src/kernel/CommUlongStringKernel.h
| M	src/kernel/CommWordKernel.cpp
| M	src/kernel/CommWordKernel.h
| M	src/kernel/CommWordStringKernel.cpp
| M	src/kernel/CommWordStringKernel.h
| M	src/kernel/ConstKernel.cpp
| M	src/kernel/ConstKernel.h
| M	src/kernel/CustomKernel.cpp
| M	src/kernel/CustomKernel.h
| M	src/kernel/DiagKernel.cpp
| M	src/kernel/DiagKernel.h
| M	src/kernel/FixedDegreeCharKernel.cpp
| M	src/kernel/FixedDegreeCharKernel.h
| M	src/kernel/GaussianKernel.cpp
| M	src/kernel/GaussianKernel.h
| M	src/kernel/HammingWordKernel.cpp
| M	src/kernel/HammingWordKernel.h
| M	src/kernel/HistogramWordKernel.cpp
| M	src/kernel/HistogramWordKernel.h
| M	src/kernel/Kernel.cpp
| M	src/kernel/Kernel.h
| M	src/kernel/KernelMachine.cpp
| M	src/kernel/KernelMachine.h
| M	src/kernel/LinearByteKernel.cpp
| M	src/kernel/LinearByteKernel.h
| M	src/kernel/LinearCharKernel.cpp
| M	src/kernel/LinearCharKernel.h
| M	src/kernel/LinearKernel.cpp
| M	src/kernel/LinearKernel.h
| M	src/kernel/LinearWordKernel.cpp
| M	src/kernel/LinearWordKernel.h
| M	src/kernel/LocalityImprovedCharKernel.cpp
| M	src/kernel/LocalityImprovedCharKernel.h
| M	src/kernel/ManhattenWordKernel.cpp
| M	src/kernel/ManhattenWordKernel.h
| M	src/kernel/PolyKernel.cpp
| M	src/kernel/PolyKernel.h
| M	src/kernel/PolyMatchCharKernel.cpp
| M	src/kernel/PolyMatchCharKernel.h
| M	src/kernel/PolyMatchWordKernel.cpp
| M	src/kernel/PolyMatchWordKernel.h
| M	src/kernel/RealKernel.h
| M	src/kernel/SalzbergWordKernel.cpp
| M	src/kernel/SalzbergWordKernel.h
| M	src/kernel/ShortKernel.h
| M	src/kernel/SigmoidKernel.cpp
| M	src/kernel/SigmoidKernel.h
| M	src/kernel/SimpleKernel.h
| M	src/kernel/SimpleLocalityImprovedCharKernel.cpp
| M	src/kernel/SimpleLocalityImprovedCharKernel.h
| M	src/kernel/SparseGaussianKernel.cpp
| M	src/kernel/SparseGaussianKernel.h
| M	src/kernel/SparseKernel.h
| M	src/kernel/SparseLinearKernel.cpp
| M	src/kernel/SparseLinearKernel.h
| M	src/kernel/SparseNormSquaredKernel.cpp
| M	src/kernel/SparseNormSquaredKernel.h
| M	src/kernel/SparsePolyKernel.cpp
| M	src/kernel/SparsePolyKernel.h
| M	src/kernel/SparseRealKernel.h
| M	src/kernel/StringKernel.h
| M	src/kernel/WDCharKernel.cpp
| M	src/kernel/WDCharKernel.h
| M	src/kernel/WeightedDegreeCharKernel.cpp
| M	src/kernel/WeightedDegreeCharKernel.h
| M	src/kernel/WeightedDegreeCharKernelPolyA.cpp
| M	src/kernel/WeightedDegreeCharKernelPolyA.h
| M	src/kernel/WeightedDegreePositionCharKernel.cpp
| M	src/kernel/WeightedDegreePositionCharKernel.h
| M	src/kernel/WordKernel.h
| M	src/kernel/WordMatchKernel.cpp
| M	src/kernel/WordMatchKernel.h
| M	src/lib/Cache.h
| M	src/lib/Cplex.cpp
| M	src/lib/Cplex.h
| M	src/lib/DynArray.h
| M	src/lib/File.cpp
| M	src/lib/File.h
| M	src/lib/List.h
| M	src/lib/Mathmatics.cpp
| M	src/lib/Mathmatics.h
| M	src/lib/Parallel.cpp
| M	src/lib/Parallel.h
| M	src/lib/Signal.cpp
| M	src/lib/Signal.h
| M	src/lib/SimpleFile.h
| M	src/lib/Time.cpp
| M	src/lib/Time.h
| M	src/lib/Version.cpp
| M	src/lib/Version.h
| M	src/lib/common.h
| M	src/lib/io.cpp
| M	src/lib/io.h
| M	src/lib/lapack.h
| M	src/preproc/LogPlusOne.cpp
| M	src/preproc/LogPlusOne.h
| M	src/preproc/NormDerivativeLem3.cpp
| M	src/preproc/NormDerivativeLem3.h
| M	src/preproc/NormOne.cpp
| M	src/preproc/NormOne.h
| M	src/preproc/PCACut.cpp
| M	src/preproc/PCACut.h
| M	src/preproc/PreProc.cpp
| M	src/preproc/PreProc.h
| M	src/preproc/PruneVarSubMean.cpp
| M	src/preproc/PruneVarSubMean.h
| M	src/preproc/RealPreProc.h
| M	src/preproc/ShortPreProc.cpp
| M	src/preproc/ShortPreProc.h
| M	src/preproc/SimplePreProc.h
| M	src/preproc/SortUlongString.cpp
| M	src/preproc/SortUlongString.h
| M	src/preproc/SortWord.cpp
| M	src/preproc/SortWord.h
| M	src/preproc/SortWordString.cpp
| M	src/preproc/SortWordString.h
| M	src/preproc/SparsePreProc.h
| M	src/preproc/StringPreProc.h
| M	src/preproc/WordPreProc.cpp
| M	src/preproc/WordPreProc.h
| M	src/regression/svr/LibSVR.cpp
| M	src/regression/svr/LibSVR.h
| M	src/regression/svr/SVR_light.cpp
| M	src/regression/svr/SVR_light.h
| D	src/svm/svm_learn.h
|  
* commit 459b8a638241a20b82326f4b9be195234c967e6b
| Author: Fabio De Bona <Fabio.De.Bona@tuebingen.mpg.de>
| Date:   Tue Jun 13 16:47:16 2006 +0000
| 
|     added length parameter to set_features
| 
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit 43a1fc6ba8608cc536685aadcb34f8f9ee8b390e
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 12 10:27:30 2006 +0000
| 
|     +make configure executable
| 
| M	src/configure
|  
* commit 440e46efd036c0e0ea292d7d02a4972e714d034c
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Sun Jun 11 23:07:59 2006 +0000
| 
|     + make char features work with numarray (work around bug in numarray and take type info from self->descr->type_num
|     + set/get_svm in R interf.
|     + make clean should not mess around in .svn
| 
| M	src/Makefile
| M	src/configure
| M	src/gui/R.cpp
| M	src/guilib/GUIPython.cpp
| M	src/guilib/GUIR.cpp
| M	src/guilib/GUIR.h
|  
* commit f57d56fe01cb8695e4dfdb824fff10e91a80d240
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Thu Jun 8 11:59:44 2006 +0000
| 
|     - -fforce-mem from configure
|     + make R interface work with matrices (not just 1d-vectors) and string matrices
|     + overload CIO::message for R to use Rprintf / Reprintf
| 
| M	src/classifier/svm/MPD.h
| M	src/configure
| M	src/gui/R.cpp
| M	src/guilib/GUIFeatures.h
| M	src/guilib/GUILabels.h
| M	src/guilib/GUIR.cpp
| M	src/lib/io.cpp
|  
* commit 8e260a5937237bc56bf3ef3908f94869e72eb604
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jun 6 12:06:47 2006 +0000
| 
|     gu's 2nd test.
|     G
| 
| D	src/deletemetoo
|  
* commit 5dabca3d3fe9bca977f55f5fcfd929cbf014cbbf
| Author: Gunnar Raetsch <Gunnar.Raetsch@tuebingen.mpg.de>
| Date:   Tue Jun 6 12:06:29 2006 +0000
| 
|     gu's test.
|     G
| 
| A	src/deletemetoo
|  
* commit 388dc8c07392684ca2c02fd6a77b5ce9b5d351dd
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 22:04:50 2006 +0000
| 
|     + classification example
| 
| M	R/configure
| A	R/examples/classification.R
| M	R/examples/regression.R
| M	src/gui/R.cpp
| M	src/guilib/GUIR.cpp
|  
* commit 13092064efb7bb2313133e0c3595fb27ce0653de
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:12:24 2006 +0000
| 
| A	R/examples/regression.R
|  
* commit c16084c387e8ae28e4d0d26cd237978c90fe6659
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:11:05 2006 +0000
| 
| M	R/Makefile
|  
* commit 7535780088d1494f968379e21a783bf3217ea6ee
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 15:07:10 2006 +0000
| 
| A	R/Makefile
| A	R/README.txt
| A	R/configure
| A	R/sg/COPYING
| A	R/sg/DESCRIPTION
| A	R/sg/INDEX
| A	R/sg/R/shogun.R
| A	R/sg/R/zzz.R
| A	R/sg/R_PROFILE.R
| A	R/sg/cleanup
| A	R/sg/demo/Rtest.R
| A	R/sg/demo/mkl_lin_sine_mix.R
| A	R/sg/demo/mkl_sine_regression.R
| A	R/sg/demo/string_kernel.R
| A	R/sg/demo/test.R
| A	R/sg/demo/test_hmm.R
| A	R/sg/demo/test_hmm_DNA.R
| A	R/sg/demo/wd_mkl.R
| A	R/sg/demo/x-max_class.R
| A	R/sg/install.R
| A	R/sg/tests/test.R
| D	interfaces/R/Makefile
| D	interfaces/R/README.txt
| D	interfaces/R/configure
| D	interfaces/R/sg/COPYING
| D	interfaces/R/sg/DESCRIPTION
| D	interfaces/R/sg/INDEX
| D	interfaces/R/sg/R/shogun.R
| D	interfaces/R/sg/R/zzz.R
| D	interfaces/R/sg/R_PROFILE.R
| D	interfaces/R/sg/cleanup
| D	interfaces/R/sg/demo/Rtest.R
| D	interfaces/R/sg/demo/mkl_lin_sine_mix.R
| D	interfaces/R/sg/demo/mkl_sine_regression.R
| D	interfaces/R/sg/demo/string_kernel.R
| D	interfaces/R/sg/demo/test.R
| D	interfaces/R/sg/demo/test_hmm.R
| D	interfaces/R/sg/demo/test_hmm_DNA.R
| D	interfaces/R/sg/demo/wd_mkl.R
| D	interfaces/R/sg/demo/x-max_class.R
| D	interfaces/R/sg/install.R
| D	interfaces/R/sg/tests/test.R
| D	interfaces/matlab/examples/@hmm/backward.m
| D	interfaces/matlab/examples/@hmm/bw_a.m
| D	interfaces/matlab/examples/@hmm/bw_b.m
| D	interfaces/matlab/examples/@hmm/bw_p.m
| D	interfaces/matlab/examples/@hmm/bw_q.m
| D	interfaces/matlab/examples/@hmm/forward.m
| D	interfaces/matlab/examples/@hmm/gamma.m
| D	interfaces/matlab/examples/@hmm/hmm.m
| D	interfaces/matlab/examples/@hmm/xi.m
| D	interfaces/matlab/examples/svmlight_hang_test.m
| D	interfaces/matlab/examples/test_classifier.m
| D	interfaces/matlab/examples/test_combined.m
| D	interfaces/matlab/examples/test_combined2.m
| D	interfaces/matlab/examples/test_custom_kernel.m
| D	interfaces/matlab/examples/test_hmm.m
| D	interfaces/matlab/examples/test_hmm_matlab.m
| D	interfaces/matlab/examples/test_kernel_optimization.m
| D	interfaces/matlab/examples/test_linadd.m
| D	interfaces/matlab/examples/test_matlab_interface.m
| D	interfaces/matlab/examples/test_mkl.m
| D	interfaces/matlab/examples/test_mkl_svr.m
| D	interfaces/matlab/examples/test_mkl_svr_wrapper.m
| D	interfaces/matlab/examples/test_rbf_kernel.m
| D	interfaces/matlab/examples/test_regression.m
| D	interfaces/matlab/examples/test_regression_linadd.m
| D	interfaces/matlab/examples/test_regression_mkl.m
| D	interfaces/matlab/examples/test_svm.m
| D	interfaces/matlab/examples/test_svmlight_libsvm.m
| D	interfaces/matlab/examples/test_svrlight_libsvr.m
| D	interfaces/matlab/examples/test_wd_linadd.m
| D	interfaces/matlab/examples/test_wdshift_kernel.m
| D	interfaces/matlab/examples/tools/PCACut.m
| D	interfaces/matlab/examples/tools/README
| D	interfaces/matlab/examples/tools/calcroc.m
| D	interfaces/matlab/examples/tools/calcrocscore.m
| D	interfaces/matlab/examples/tools/graph_hmm.m
| D	interfaces/matlab/examples/tools/graph_hmm2.m
| D	interfaces/matlab/examples/tools/model_to_graph.m
| D	interfaces/matlab/examples/tools/plotroc.m
| D	interfaces/matlab/examples/tools/read_feature_matrix.m
| D	interfaces/matlab/examples/tools/readroc.m
| D	interfaces/matlab/examples/tools/save_as_ascii.m
| D	interfaces/matlab/examples/tools/save_as_double.m
| D	interfaces/python/examples/fabio_test.py
| D	interfaces/python/examples/test_mkl.py
| D	interfaces/python/examples/test_mpdsvm.py
| D	interfaces/python/examples/test_python.py
| A	matlab/examples/@hmm/backward.m
| A	matlab/examples/@hmm/bw_a.m
| A	matlab/examples/@hmm/bw_b.m
| A	matlab/examples/@hmm/bw_p.m
| A	matlab/examples/@hmm/bw_q.m
| A	matlab/examples/@hmm/forward.m
| A	matlab/examples/@hmm/gamma.m
| A	matlab/examples/@hmm/hmm.m
| A	matlab/examples/@hmm/xi.m
| A	matlab/examples/svmlight_hang_test.m
| A	matlab/examples/test_classifier.m
| A	matlab/examples/test_combined.m
| A	matlab/examples/test_combined2.m
| A	matlab/examples/test_custom_kernel.m
| A	matlab/examples/test_hmm.m
| A	matlab/examples/test_hmm_matlab.m
| A	matlab/examples/test_kernel_optimization.m
| A	matlab/examples/test_linadd.m
| A	matlab/examples/test_matlab_interface.m
| A	matlab/examples/test_mkl.m
| A	matlab/examples/test_mkl_svr.m
| A	matlab/examples/test_mkl_svr_wrapper.m
| A	matlab/examples/test_rbf_kernel.m
| A	matlab/examples/test_regression.m
| A	matlab/examples/test_regression_linadd.m
| A	matlab/examples/test_regression_mkl.m
| A	matlab/examples/test_svm.m
| A	matlab/examples/test_svmlight_libsvm.m
| A	matlab/examples/test_svrlight_libsvr.m
| A	matlab/examples/test_wd_linadd.m
| A	matlab/examples/test_wdshift_kernel.m
| A	matlab/examples/tools/PCACut.m
| A	matlab/examples/tools/README
| A	matlab/examples/tools/calcroc.m
| A	matlab/examples/tools/calcrocscore.m
| A	matlab/examples/tools/graph_hmm.m
| A	matlab/examples/tools/graph_hmm2.m
| A	matlab/examples/tools/model_to_graph.m
| A	matlab/examples/tools/plotroc.m
| A	matlab/examples/tools/read_feature_matrix.m
| A	matlab/examples/tools/readroc.m
| A	matlab/examples/tools/save_as_ascii.m
| A	matlab/examples/tools/save_as_double.m
| A	python/examples/fabio_test.py
| A	python/examples/test_mkl.py
| A	python/examples/test_mpdsvm.py
| A	python/examples/test_python.py
|  
* commit 584bc0e961cb6cca26bb562d1c3ec9c2b15e27c1
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:47:24 2006 +0000
| 
| D	interfaces/examples/@hmm/backward.m
| D	interfaces/examples/@hmm/bw_a.m
| D	interfaces/examples/@hmm/bw_b.m
| D	interfaces/examples/@hmm/bw_p.m
| D	interfaces/examples/@hmm/bw_q.m
| D	interfaces/examples/@hmm/forward.m
| D	interfaces/examples/@hmm/gamma.m
| D	interfaces/examples/@hmm/hmm.m
| D	interfaces/examples/@hmm/xi.m
| D	interfaces/examples/svmlight_hang_test.m
| D	interfaces/examples/test_classifier.m
| D	interfaces/examples/test_combined.m
| D	interfaces/examples/test_combined2.m
| D	interfaces/examples/test_custom_kernel.m
| D	interfaces/examples/test_hmm.m
| D	interfaces/examples/test_hmm_matlab.m
| D	interfaces/examples/test_kernel_optimization.m
| D	interfaces/examples/test_linadd.m
| D	interfaces/examples/test_matlab_interface.m
| D	interfaces/examples/test_mkl.m
| D	interfaces/examples/test_mkl_svr.m
| D	interfaces/examples/test_mkl_svr_wrapper.m
| D	interfaces/examples/test_rbf_kernel.m
| D	interfaces/examples/test_regression.m
| D	interfaces/examples/test_regression_linadd.m
| D	interfaces/examples/test_regression_mkl.m
| D	interfaces/examples/test_svm.m
| D	interfaces/examples/test_svmlight_libsvm.m
| D	interfaces/examples/test_svrlight_libsvr.m
| D	interfaces/examples/test_wd_linadd.m
| D	interfaces/examples/test_wdshift_kernel.m
| D	interfaces/examples/tools/PCACut.m
| D	interfaces/examples/tools/README
| D	interfaces/examples/tools/calcroc.m
| D	interfaces/examples/tools/calcrocscore.m
| D	interfaces/examples/tools/graph_hmm.m
| D	interfaces/examples/tools/graph_hmm2.m
| D	interfaces/examples/tools/model_to_graph.m
| D	interfaces/examples/tools/plotroc.m
| D	interfaces/examples/tools/read_feature_matrix.m
| D	interfaces/examples/tools/readroc.m
| D	interfaces/examples/tools/save_as_ascii.m
| D	interfaces/examples/tools/save_as_double.m
| A	interfaces/matlab/examples/@hmm/backward.m
| A	interfaces/matlab/examples/@hmm/bw_a.m
| A	interfaces/matlab/examples/@hmm/bw_b.m
| A	interfaces/matlab/examples/@hmm/bw_p.m
| A	interfaces/matlab/examples/@hmm/bw_q.m
| A	interfaces/matlab/examples/@hmm/forward.m
| A	interfaces/matlab/examples/@hmm/gamma.m
| A	interfaces/matlab/examples/@hmm/hmm.m
| A	interfaces/matlab/examples/@hmm/xi.m
| A	interfaces/matlab/examples/svmlight_hang_test.m
| A	interfaces/matlab/examples/test_classifier.m
| A	interfaces/matlab/examples/test_combined.m
| A	interfaces/matlab/examples/test_combined2.m
| A	interfaces/matlab/examples/test_custom_kernel.m
| A	interfaces/matlab/examples/test_hmm.m
| A	interfaces/matlab/examples/test_hmm_matlab.m
| A	interfaces/matlab/examples/test_kernel_optimization.m
| A	interfaces/matlab/examples/test_linadd.m
| A	interfaces/matlab/examples/test_matlab_interface.m
| A	interfaces/matlab/examples/test_mkl.m
| A	interfaces/matlab/examples/test_mkl_svr.m
| A	interfaces/matlab/examples/test_mkl_svr_wrapper.m
| A	interfaces/matlab/examples/test_rbf_kernel.m
| A	interfaces/matlab/examples/test_regression.m
| A	interfaces/matlab/examples/test_regression_linadd.m
| A	interfaces/matlab/examples/test_regression_mkl.m
| A	interfaces/matlab/examples/test_svm.m
| A	interfaces/matlab/examples/test_svmlight_libsvm.m
| A	interfaces/matlab/examples/test_svrlight_libsvr.m
| A	interfaces/matlab/examples/test_wd_linadd.m
| A	interfaces/matlab/examples/test_wdshift_kernel.m
| A	interfaces/matlab/examples/tools/PCACut.m
| A	interfaces/matlab/examples/tools/README
| A	interfaces/matlab/examples/tools/calcroc.m
| A	interfaces/matlab/examples/tools/calcrocscore.m
| A	interfaces/matlab/examples/tools/graph_hmm.m
| A	interfaces/matlab/examples/tools/graph_hmm2.m
| A	interfaces/matlab/examples/tools/model_to_graph.m
| A	interfaces/matlab/examples/tools/plotroc.m
| A	interfaces/matlab/examples/tools/read_feature_matrix.m
| A	interfaces/matlab/examples/tools/readroc.m
| A	interfaces/matlab/examples/tools/save_as_ascii.m
| A	interfaces/matlab/examples/tools/save_as_double.m
| A	interfaces/python/examples/fabio_test.py
| A	interfaces/python/examples/test_mkl.py
| A	interfaces/python/examples/test_mpdsvm.py
| A	interfaces/python/examples/test_python.py
| D	interfaces/python/fabio_test.py
| D	interfaces/python/test_mkl.py
| D	interfaces/python/test_mpdsvm.py
| D	interfaces/python/test_python.py
|  
* commit 3c7799a3ce1f7623bd8e8819820a52fc45ae7d3a
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:44:48 2006 +0000
| 
| A	interfaces/examples/@hmm/backward.m
| A	interfaces/examples/@hmm/bw_a.m
| A	interfaces/examples/@hmm/bw_b.m
| A	interfaces/examples/@hmm/bw_p.m
| A	interfaces/examples/@hmm/bw_q.m
| A	interfaces/examples/@hmm/forward.m
| A	interfaces/examples/@hmm/gamma.m
| A	interfaces/examples/@hmm/hmm.m
| A	interfaces/examples/@hmm/xi.m
| A	interfaces/examples/svmlight_hang_test.m
| A	interfaces/examples/test_classifier.m
| A	interfaces/examples/test_combined.m
| A	interfaces/examples/test_combined2.m
| A	interfaces/examples/test_custom_kernel.m
| A	interfaces/examples/test_hmm.m
| A	interfaces/examples/test_hmm_matlab.m
| A	interfaces/examples/test_kernel_optimization.m
| A	interfaces/examples/test_linadd.m
| A	interfaces/examples/test_matlab_interface.m
| A	interfaces/examples/test_mkl.m
| A	interfaces/examples/test_mkl_svr.m
| A	interfaces/examples/test_mkl_svr_wrapper.m
| A	interfaces/examples/test_rbf_kernel.m
| A	interfaces/examples/test_regression.m
| A	interfaces/examples/test_regression_linadd.m
| A	interfaces/examples/test_regression_mkl.m
| A	interfaces/examples/test_svm.m
| A	interfaces/examples/test_svmlight_libsvm.m
| A	interfaces/examples/test_svrlight_libsvr.m
| A	interfaces/examples/test_wd_linadd.m
| A	interfaces/examples/test_wdshift_kernel.m
| A	interfaces/examples/tools/PCACut.m
| A	interfaces/examples/tools/README
| A	interfaces/examples/tools/calcroc.m
| A	interfaces/examples/tools/calcrocscore.m
| A	interfaces/examples/tools/graph_hmm.m
| A	interfaces/examples/tools/graph_hmm2.m
| A	interfaces/examples/tools/model_to_graph.m
| A	interfaces/examples/tools/plotroc.m
| A	interfaces/examples/tools/read_feature_matrix.m
| A	interfaces/examples/tools/readroc.m
| A	interfaces/examples/tools/save_as_ascii.m
| A	interfaces/examples/tools/save_as_double.m
| D	interfaces/matlab/@hmm/backward.m
| D	interfaces/matlab/@hmm/bw_a.m
| D	interfaces/matlab/@hmm/bw_b.m
| D	interfaces/matlab/@hmm/bw_p.m
| D	interfaces/matlab/@hmm/bw_q.m
| D	interfaces/matlab/@hmm/forward.m
| D	interfaces/matlab/@hmm/gamma.m
| D	interfaces/matlab/@hmm/hmm.m
| D	interfaces/matlab/@hmm/xi.m
| D	interfaces/matlab/svmlight_hang_test.m
| D	interfaces/matlab/test_classifier.m
| D	interfaces/matlab/test_combined.m
| D	interfaces/matlab/test_combined2.m
| D	interfaces/matlab/test_custom_kernel.m
| D	interfaces/matlab/test_hmm.m
| D	interfaces/matlab/test_hmm_matlab.m
| D	interfaces/matlab/test_kernel_optimization.m
| D	interfaces/matlab/test_linadd.m
| D	interfaces/matlab/test_matlab_interface.m
| D	interfaces/matlab/test_mkl.m
| D	interfaces/matlab/test_mkl_svr.m
| D	interfaces/matlab/test_mkl_svr_wrapper.m
| D	interfaces/matlab/test_rbf_kernel.m
| D	interfaces/matlab/test_regression.m
| D	interfaces/matlab/test_regression_linadd.m
| D	interfaces/matlab/test_regression_mkl.m
| D	interfaces/matlab/test_svm.m
| D	interfaces/matlab/test_svmlight_libsvm.m
| D	interfaces/matlab/test_svrlight_libsvr.m
| D	interfaces/matlab/test_wd_linadd.m
| D	interfaces/matlab/test_wdshift_kernel.m
| D	interfaces/matlab/tools/PCACut.m
| D	interfaces/matlab/tools/README
| D	interfaces/matlab/tools/calcroc.m
| D	interfaces/matlab/tools/calcrocscore.m
| D	interfaces/matlab/tools/graph_hmm.m
| D	interfaces/matlab/tools/graph_hmm2.m
| D	interfaces/matlab/tools/model_to_graph.m
| D	interfaces/matlab/tools/plotroc.m
| D	interfaces/matlab/tools/read_feature_matrix.m
| D	interfaces/matlab/tools/readroc.m
| D	interfaces/matlab/tools/save_as_ascii.m
| D	interfaces/matlab/tools/save_as_double.m
|  
* commit 325dbb59e40825a1e009738c42cd528f81043fdc
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:39:16 2006 +0000
| 
| D	R/Makefile
| D	R/README.txt
| D	R/configure
| D	R/sg/COPYING
| D	R/sg/DESCRIPTION
| D	R/sg/INDEX
| D	R/sg/R/shogun.R
| D	R/sg/R/zzz.R
| D	R/sg/R_PROFILE.R
| D	R/sg/cleanup
| D	R/sg/demo/Rtest.R
| D	R/sg/demo/mkl_lin_sine_mix.R
| D	R/sg/demo/mkl_sine_regression.R
| D	R/sg/demo/string_kernel.R
| D	R/sg/demo/test.R
| D	R/sg/demo/test_hmm.R
| D	R/sg/demo/test_hmm_DNA.R
| D	R/sg/demo/wd_mkl.R
| D	R/sg/demo/x-max_class.R
| D	R/sg/install.R
| D	R/sg/tests/test.R
| A	interfaces/R/Makefile
| A	interfaces/R/README.txt
| A	interfaces/R/configure
| A	interfaces/R/sg/COPYING
| A	interfaces/R/sg/DESCRIPTION
| A	interfaces/R/sg/INDEX
| A	interfaces/R/sg/R/shogun.R
| A	interfaces/R/sg/R/zzz.R
| A	interfaces/R/sg/R_PROFILE.R
| A	interfaces/R/sg/cleanup
| A	interfaces/R/sg/demo/Rtest.R
| A	interfaces/R/sg/demo/mkl_lin_sine_mix.R
| A	interfaces/R/sg/demo/mkl_sine_regression.R
| A	interfaces/R/sg/demo/string_kernel.R
| A	interfaces/R/sg/demo/test.R
| A	interfaces/R/sg/demo/test_hmm.R
| A	interfaces/R/sg/demo/test_hmm_DNA.R
| A	interfaces/R/sg/demo/wd_mkl.R
| A	interfaces/R/sg/demo/x-max_class.R
| A	interfaces/R/sg/install.R
| A	interfaces/R/sg/tests/test.R
| A	interfaces/matlab/@hmm/backward.m
| A	interfaces/matlab/@hmm/bw_a.m
| A	interfaces/matlab/@hmm/bw_b.m
| A	interfaces/matlab/@hmm/bw_p.m
| A	interfaces/matlab/@hmm/bw_q.m
| A	interfaces/matlab/@hmm/forward.m
| A	interfaces/matlab/@hmm/gamma.m
| A	interfaces/matlab/@hmm/hmm.m
| A	interfaces/matlab/@hmm/xi.m
| A	interfaces/matlab/svmlight_hang_test.m
| A	interfaces/matlab/test_classifier.m
| A	interfaces/matlab/test_combined.m
| A	interfaces/matlab/test_combined2.m
| A	interfaces/matlab/test_custom_kernel.m
| A	interfaces/matlab/test_hmm.m
| A	interfaces/matlab/test_hmm_matlab.m
| A	interfaces/matlab/test_kernel_optimization.m
| A	interfaces/matlab/test_linadd.m
| A	interfaces/matlab/test_matlab_interface.m
| A	interfaces/matlab/test_mkl.m
| A	interfaces/matlab/test_mkl_svr.m
| A	interfaces/matlab/test_mkl_svr_wrapper.m
| A	interfaces/matlab/test_rbf_kernel.m
| A	interfaces/matlab/test_regression.m
| A	interfaces/matlab/test_regression_linadd.m
| A	interfaces/matlab/test_regression_mkl.m
| A	interfaces/matlab/test_svm.m
| A	interfaces/matlab/test_svmlight_libsvm.m
| A	interfaces/matlab/test_svrlight_libsvr.m
| A	interfaces/matlab/test_wd_linadd.m
| A	interfaces/matlab/test_wdshift_kernel.m
| A	interfaces/matlab/tools/PCACut.m
| A	interfaces/matlab/tools/README
| A	interfaces/matlab/tools/calcroc.m
| A	interfaces/matlab/tools/calcrocscore.m
| A	interfaces/matlab/tools/graph_hmm.m
| A	interfaces/matlab/tools/graph_hmm2.m
| A	interfaces/matlab/tools/model_to_graph.m
| A	interfaces/matlab/tools/plotroc.m
| A	interfaces/matlab/tools/read_feature_matrix.m
| A	interfaces/matlab/tools/readroc.m
| A	interfaces/matlab/tools/save_as_ascii.m
| A	interfaces/matlab/tools/save_as_double.m
| A	interfaces/python/fabio_test.py
| A	interfaces/python/test_mkl.py
| A	interfaces/python/test_mpdsvm.py
| A	interfaces/python/test_python.py
| D	matlab/@hmm/backward.m
| D	matlab/@hmm/bw_a.m
| D	matlab/@hmm/bw_b.m
| D	matlab/@hmm/bw_p.m
| D	matlab/@hmm/bw_q.m
| D	matlab/@hmm/forward.m
| D	matlab/@hmm/gamma.m
| D	matlab/@hmm/hmm.m
| D	matlab/@hmm/xi.m
| D	matlab/svmlight_hang_test.m
| D	matlab/test_classifier.m
| D	matlab/test_combined.m
| D	matlab/test_combined2.m
| D	matlab/test_custom_kernel.m
| D	matlab/test_hmm.m
| D	matlab/test_hmm_matlab.m
| D	matlab/test_kernel_optimization.m
| D	matlab/test_linadd.m
| D	matlab/test_matlab_interface.m
| D	matlab/test_mkl.m
| D	matlab/test_mkl_svr.m
| D	matlab/test_mkl_svr_wrapper.m
| D	matlab/test_rbf_kernel.m
| D	matlab/test_regression.m
| D	matlab/test_regression_linadd.m
| D	matlab/test_regression_mkl.m
| D	matlab/test_svm.m
| D	matlab/test_svmlight_libsvm.m
| D	matlab/test_svrlight_libsvr.m
| D	matlab/test_wd_linadd.m
| D	matlab/test_wdshift_kernel.m
| D	matlab/tools/PCACut.m
| D	matlab/tools/README
| D	matlab/tools/calcroc.m
| D	matlab/tools/calcrocscore.m
| D	matlab/tools/graph_hmm.m
| D	matlab/tools/graph_hmm2.m
| D	matlab/tools/model_to_graph.m
| D	matlab/tools/plotroc.m
| D	matlab/tools/read_feature_matrix.m
| D	matlab/tools/readroc.m
| D	matlab/tools/save_as_ascii.m
| D	matlab/tools/save_as_double.m
| D	python/fabio_test.py
| D	python/test_mkl.py
| D	python/test_mpdsvm.py
| D	python/test_python.py
| D	tests/gen_int.cpp
| D	tests/gen_sparse.cpp
| D	tests/runtime_type_detection.cpp
| D	tests/type_comparison.cpp
|  
* commit 6db66fa3e949cd95fcd72636b62f535c4c23c462
| Author: Soeren Sonnenburg <sonne@debian.org>
| Date:   Mon Jun 5 14:37:10 2006 +0000
| 
| A	R/Makefile
| A	R/README.txt
| A	R/configure
| A	R/sg/COPYING
| A	R/sg/DESCRIPTION
| A	R/sg/INDEX
| A	R/sg/R/shogun.R
| A	R/sg/R/zzz.R
| A	R/sg/R_PROFILE.R
| A	R/sg/cleanup
| A	R/sg/demo/Rtest.R
| A	R/sg/demo/mkl_lin_sine_mix.R
| A	R/sg/demo/mkl_sine_regression.R
| A	R/sg/demo/string_kernel.R
| A	R/sg/demo/test.R
| A	R/sg/demo/test_hmm.R
| A	R/sg/demo/test_hmm_DNA.R
| A	R/sg/demo/wd_mkl.R
| A	R/sg/demo/x-max_class.R
| A	R/sg/install.R
| A	R/sg/tests/test.R
|  
* commit df17cc4574995c93428fd03f518b8aee98a72579
  Author: Soeren Sonnenburg <sonne@debian.org>
  Date:   Mon Jun 5 14:33:25 2006 +0000
  
  A	doc/doxygen/Doxyfile
  A	doc/doxygen/footer.dpp
  A	matlab/@hmm/backward.m
  A	matlab/@hmm/bw_a.m
  A	matlab/@hmm/bw_b.m
  A	matlab/@hmm/bw_p.m
  A	matlab/@hmm/bw_q.m
  A	matlab/@hmm/forward.m
  A	matlab/@hmm/gamma.m
  A	matlab/@hmm/hmm.m
  A	matlab/@hmm/xi.m
  A	matlab/svmlight_hang_test.m
  A	matlab/test_classifier.m
  A	matlab/test_combined.m
  A	matlab/test_combined2.m
  A	matlab/test_custom_kernel.m
  A	matlab/test_hmm.m
  A	matlab/test_hmm_matlab.m
  A	matlab/test_kernel_optimization.m
  A	matlab/test_linadd.m
  A	matlab/test_matlab_interface.m
  A	matlab/test_mkl.m
  A	matlab/test_mkl_svr.m
  A	matlab/test_mkl_svr_wrapper.m
  A	matlab/test_rbf_kernel.m
  A	matlab/test_regression.m
  A	matlab/test_regression_linadd.m
  A	matlab/test_regression_mkl.m
  A	matlab/test_svm.m
  A	matlab/test_svmlight_libsvm.m
  A	matlab/test_svrlight_libsvr.m
  A	matlab/test_wd_linadd.m
  A	matlab/test_wdshift_kernel.m
  A	matlab/tools/PCACut.m
  A	matlab/tools/README
  A	matlab/tools/calcroc.m
  A	matlab/tools/calcrocscore.m
  A	matlab/tools/graph_hmm.m
  A	matlab/tools/graph_hmm2.m
  A	matlab/tools/model_to_graph.m
  A	matlab/tools/plotroc.m
  A	matlab/tools/read_feature_matrix.m
  A	matlab/tools/readroc.m
  A	matlab/tools/save_as_ascii.m
  A	matlab/tools/save_as_double.m
  A	python/fabio_test.py
  A	python/test_mkl.py
  A	python/test_mpdsvm.py
  A	python/test_python.py
  A	src/.cpuinfo.c
  A	src/.generate_link_dependencies.py
  A	src/.version.sh
  A	src/HISTORY
  A	src/LICENSE
  A	src/Makefile
  A	src/README
  A	src/TODO
  A	src/classifier/Classifier.cpp
  A	src/classifier/Classifier.h
  A	src/classifier/Classifier.i
  A	src/classifier/KNN.cpp
  A	src/classifier/KNN.h
  A	src/classifier/KNN.i
  A	src/classifier/KernelPerceptron.cpp
  A	src/classifier/KernelPerceptron.h
  A	src/classifier/KernelPerceptron.i
  A	src/classifier/LDA.cpp
  A	src/classifier/LDA.h
  A	src/classifier/LDA.i
  A	src/classifier/LPM.cpp
  A	src/classifier/LPM.h
  A	src/classifier/LPM.i
  A	src/classifier/LinearClassifier.cpp
  A	src/classifier/LinearClassifier.h
  A	src/classifier/LinearClassifier.i
  A	src/classifier/Perceptron.cpp
  A	src/classifier/Perceptron.h
  A	src/classifier/Perceptron.i
  A	src/classifier/PluginEstimate.cpp
  A	src/classifier/PluginEstimate.h
  A	src/classifier/PluginEstimate.i
  A	src/classifier/__init__.py
  A	src/classifier/svm/CPLEXSVM.cpp
  A	src/classifier/svm/CPLEXSVM.h
  A	src/classifier/svm/GPBTSVM.cpp
  A	src/classifier/svm/GPBTSVM.h
  A	src/classifier/svm/KerthiPrimalSVM.cpp
  A	src/classifier/svm/KerthiPrimalSVM.h
  A	src/classifier/svm/LibSVM.cpp
  A	src/classifier/svm/LibSVM.h
  A	src/classifier/svm/LibSVM.i
  A	src/classifier/svm/MPD.cpp
  A	src/classifier/svm/MPD.h
  A	src/classifier/svm/Optimizer.cpp
  A	src/classifier/svm/Optimizer.h
  A	src/classifier/svm/SVM.cpp
  A	src/classifier/svm/SVM.h
  A	src/classifier/svm/SVM.i
  A	src/classifier/svm/SVM_libsvm.cpp
  A	src/classifier/svm/SVM_libsvm.h
  A	src/classifier/svm/SVM_light.cpp
  A	src/classifier/svm/SVM_light.h
  A	src/classifier/svm/SVM_light.i
  A	src/classifier/svm/__init__.py
  A	src/classifier/svm/gpdt.cpp
  A	src/classifier/svm/gpdt.h
  A	src/classifier/svm/gpdtsolve.cpp
  A	src/classifier/svm/gpm.cpp
  A	src/classifier/svm/pr_loqo.cpp
  A	src/classifier/svm/pr_loqo.h
  A	src/configure
  A	src/d-bug.py
  A	src/distributions/Distribution.cpp
  A	src/distributions/Distribution.h
  A	src/distributions/Distribution.i
  A	src/distributions/histogram/Histogram.cpp
  A	src/distributions/histogram/Histogram.h
  A	src/distributions/hmm/GHMM.cpp
  A	src/distributions/hmm/GHMM.h
  A	src/distributions/hmm/HMM.cpp
  A	src/distributions/hmm/HMM.h
  A	src/distributions/hmm/HMM_bestpath.cpp
  A	src/distributions/hmm/HMM_bestpath_2struct.cpp
  A	src/distributions/hmm/HMM_bestpath_simple.cpp
  A	src/distributions/hmm/LinearHMM.cpp
  A	src/distributions/hmm/LinearHMM.h
  A	src/distributions/hmm/fibheap.cpp
  A	src/distributions/hmm/fibheap.h
  A	src/distributions/hmm/penalty_info.cpp
  A	src/distributions/hmm/penalty_info.h
  A	src/features/ByteFeatures.cpp
  A	src/features/ByteFeatures.h
  A	src/features/ByteFeatures.i
  A	src/features/CharFeatures.cpp
  A	src/features/CharFeatures.h
  A	src/features/CharFeatures.i
  A	src/features/CombinedFeatures.cpp
  A	src/features/CombinedFeatures.h
  A	src/features/CombinedFeatures.i
  A	src/features/FKFeatures.cpp
  A	src/features/FKFeatures.h
  A	src/features/FKFeatures.i
  A	src/features/Features.cpp
  A	src/features/Features.h
  A	src/features/Features.i
  A	src/features/Labels.cpp
  A	src/features/Labels.h
  A	src/features/Labels.i
  A	src/features/RealFeatures.cpp
  A	src/features/RealFeatures.h
  A	src/features/RealFeatures.i
  A	src/features/RealFileFeatures.cpp
  A	src/features/RealFileFeatures.h
  A	src/features/RealFileFeatures.i
  A	src/features/ShortFeatures.cpp
  A	src/features/ShortFeatures.h
  A	src/features/ShortFeatures.i
  A	src/features/SimpleFeatures.h
  A	src/features/SimpleFeatures.i
  A	src/features/SparseFeatures.h
  A	src/features/SparseFeatures.i
  A	src/features/SparseRealFeatures.cpp
  A	src/features/SparseRealFeatures.h
  A	src/features/SparseRealFeatures.i
  A	src/features/StringFeatures.cpp
  A	src/features/StringFeatures.h
  A	src/features/StringFeatures.i
  A	src/features/TOPFeatures.cpp
  A	src/features/TOPFeatures.h
  A	src/features/TOPFeatures.i
  A	src/features/WordFeatures.cpp
  A	src/features/WordFeatures.h
  A	src/features/WordFeatures.i
  A	src/features/__init__.py
  A	src/g.R
  A	src/gui/GUI.cpp
  A	src/gui/GUI.h
  A	src/gui/Matlab.cpp
  A	src/gui/Octave.cpp
  A	src/gui/Python.cpp
  A	src/gui/Python.h
  A	src/gui/R.cpp
  A	src/gui/TextGUI.cpp
  A	src/gui/TextGUI.h
  A	src/guilib/GUIClassifier.cpp
  A	src/guilib/GUIClassifier.h
  A	src/guilib/GUIFeatures.cpp
  A	src/guilib/GUIFeatures.h
  A	src/guilib/GUIHMM.cpp
  A	src/guilib/GUIHMM.h
  A	src/guilib/GUIKNN.cpp
  A	src/guilib/GUIKNN.h
  A	src/guilib/GUIKernel.cpp
  A	src/guilib/GUIKernel.h
  A	src/guilib/GUILabels.cpp
  A	src/guilib/GUILabels.h
  A	src/guilib/GUIMath.cpp
  A	src/guilib/GUIMath.h
  A	src/guilib/GUIMatlab.cpp
  A	src/guilib/GUIMatlab.h
  A	src/guilib/GUIOctave.cpp
  A	src/guilib/GUIOctave.h
  A	src/guilib/GUIPluginEstimate.cpp
  A	src/guilib/GUIPluginEstimate.h
  A	src/guilib/GUIPreProc.cpp
  A	src/guilib/GUIPreProc.h
  A	src/guilib/GUIPython.cpp
  A	src/guilib/GUIPython.h
  A	src/guilib/GUIR.cpp
  A	src/guilib/GUIR.h
  A	src/guilib/GUISVM.cpp
  A	src/guilib/GUISVM.h
  A	src/guilib/GUITime.cpp
  A	src/guilib/GUITime.h
  A	src/kernel/AUCKernel.cpp
  A	src/kernel/AUCKernel.h
  A	src/kernel/AUCKernel.i
  A	src/kernel/ByteKernel.h
  A	src/kernel/ByteKernel.i
  A	src/kernel/CanberraWordKernel.cpp
  A	src/kernel/CanberraWordKernel.h
  A	src/kernel/CharKernel.h
  A	src/kernel/CharKernel.i
  A	src/kernel/CharPolyKernel.cpp
  A	src/kernel/CharPolyKernel.h
  A	src/kernel/CharPolyKernel.i
  A	src/kernel/Chi2Kernel.cpp
  A	src/kernel/Chi2Kernel.h
  A	src/kernel/Chi2Kernel.i
  A	src/kernel/CombinedKernel.cpp
  A	src/kernel/CombinedKernel.h
  A	src/kernel/CombinedKernel.i
  A	src/kernel/CommUlongStringKernel.cpp
  A	src/kernel/CommUlongStringKernel.h
  A	src/kernel/CommUlongStringKernel.i
  A	src/kernel/CommWordKernel.cpp
  A	src/kernel/CommWordKernel.h
  A	src/kernel/CommWordKernel.i
  A	src/kernel/CommWordStringKernel.cpp
  A	src/kernel/CommWordStringKernel.h
  A	src/kernel/CommWordStringKernel.i
  A	src/kernel/ConstKernel.cpp
  A	src/kernel/ConstKernel.h
  A	src/kernel/CustomKernel.cpp
  A	src/kernel/CustomKernel.h
  A	src/kernel/CustomKernel.i
  A	src/kernel/DiagKernel.cpp
  A	src/kernel/DiagKernel.h
  A	src/kernel/DiagKernel.i
  A	src/kernel/FixedDegreeCharKernel.cpp
  A	src/kernel/FixedDegreeCharKernel.h
  A	src/kernel/FixedDegreeCharKernel.i
  A	src/kernel/GaussianKernel.cpp
  A	src/kernel/GaussianKernel.h
  A	src/kernel/GaussianKernel.i
  A	src/kernel/HammingWordKernel.cpp
  A	src/kernel/HammingWordKernel.h
  A	src/kernel/HistogramWordKernel.cpp
  A	src/kernel/HistogramWordKernel.h
  A	src/kernel/HistogramWordKernel.i
  A	src/kernel/Kernel.cpp
  A	src/kernel/Kernel.h
  A	src/kernel/Kernel.i
  A	src/kernel/KernelMachine.cpp
  A	src/kernel/KernelMachine.h
  A	src/kernel/KernelMachine.i
  A	src/kernel/LinearByteKernel.cpp
  A	src/kernel/LinearByteKernel.h
  A	src/kernel/LinearByteKernel.i
  A	src/kernel/LinearCharKernel.cpp
  A	src/kernel/LinearCharKernel.h
  A	src/kernel/LinearCharKernel.i
  A	src/kernel/LinearKernel.cpp
  A	src/kernel/LinearKernel.h
  A	src/kernel/LinearKernel.i
  A	src/kernel/LinearWordKernel.cpp
  A	src/kernel/LinearWordKernel.h
  A	src/kernel/LinearWordKernel.i
  A	src/kernel/LocalityImprovedCharKernel.cpp
  A	src/kernel/LocalityImprovedCharKernel.h
  A	src/kernel/LocalityImprovedCharKernel.i
  A	src/kernel/ManhattenWordKernel.cpp
  A	src/kernel/ManhattenWordKernel.h
  A	src/kernel/PolyKernel.cpp
  A	src/kernel/PolyKernel.h
  A	src/kernel/PolyKernel.i
  A	src/kernel/PolyMatchCharKernel.cpp
  A	src/kernel/PolyMatchCharKernel.h
  A	src/kernel/PolyMatchCharKernel.i
  A	src/kernel/PolyMatchWordKernel.cpp
  A	src/kernel/PolyMatchWordKernel.h
  A	src/kernel/PolyMatchWordKernel.i
  A	src/kernel/RealKernel.h
  A	src/kernel/RealKernel.i
  A	src/kernel/SalzbergWordKernel.cpp
  A	src/kernel/SalzbergWordKernel.h
  A	src/kernel/SalzbergWordKernel.i
  A	src/kernel/ShortKernel.h
  A	src/kernel/ShortKernel.i
  A	src/kernel/SigmoidKernel.cpp
  A	src/kernel/SigmoidKernel.h
  A	src/kernel/SigmoidKernel.i
  A	src/kernel/SimpleKernel.h
  A	src/kernel/SimpleKernel.i
  A	src/kernel/SimpleLocalityImprovedCharKernel.cpp
  A	src/kernel/SimpleLocalityImprovedCharKernel.h
  A	src/kernel/SimpleLocalityImprovedCharKernel.i
  A	src/kernel/SparseGaussianKernel.cpp
  A	src/kernel/SparseGaussianKernel.h
  A	src/kernel/SparseGaussianKernel.i
  A	src/kernel/SparseKernel.h
  A	src/kernel/SparseKernel.i
  A	src/kernel/SparseLinearKernel.cpp
  A	src/kernel/SparseLinearKernel.h
  A	src/kernel/SparseLinearKernel.i
  A	src/kernel/SparseNormSquaredKernel.cpp
  A	src/kernel/SparseNormSquaredKernel.h
  A	src/kernel/SparseNormSquaredKernel.i
  A	src/kernel/SparsePolyKernel.cpp
  A	src/kernel/SparsePolyKernel.h
  A	src/kernel/SparsePolyKernel.i
  A	src/kernel/SparseRealKernel.h
  A	src/kernel/SparseRealKernel.i
  A	src/kernel/StringKernel.h
  A	src/kernel/StringKernel.i
  A	src/kernel/WDCharKernel.cpp
  A	src/kernel/WDCharKernel.h
  A	src/kernel/WDCharKernel.i
  A	src/kernel/WeightedDegreeCharKernel.cpp
  A	src/kernel/WeightedDegreeCharKernel.h
  A	src/kernel/WeightedDegreeCharKernel.i
  A	src/kernel/WeightedDegreeCharKernelPolyA.cpp
  A	src/kernel/WeightedDegreeCharKernelPolyA.h
  A	src/kernel/WeightedDegreeCharKernelPolyA.i
  A	src/kernel/WeightedDegreePositionCharKernel.cpp
  A	src/kernel/WeightedDegreePositionCharKernel.h
  A	src/kernel/WeightedDegreePositionCharKernel.i
  A	src/kernel/WordKernel.h
  A	src/kernel/WordKernel.i
  A	src/kernel/WordMatchKernel.cpp
  A	src/kernel/WordMatchKernel.h
  A	src/kernel/WordMatchKernel.i
  A	src/kernel/__init__.py
  A	src/lib/Cache.h
  A	src/lib/Cache.i
  A	src/lib/Cplex.cpp
  A	src/lib/Cplex.h
  A	src/lib/DynArray.h
  A	src/lib/DynArray.i
  A	src/lib/File.cpp
  A	src/lib/File.h
  A	src/lib/File.i
  A	src/lib/List.h
  A	src/lib/List.i
  A	src/lib/Mathmatics.cpp
  A	src/lib/Mathmatics.h
  A	src/lib/Mathmatics.i
  A	src/lib/Parallel.cpp
  A	src/lib/Parallel.h
  A	src/lib/Parallel.i
  A	src/lib/Signal.cpp
  A	src/lib/Signal.h
  A	src/lib/Signal.i
  A	src/lib/SimpleFile.h
  A	src/lib/SimpleFile.i
  A	src/lib/Time.cpp
  A	src/lib/Time.h
  A	src/lib/Time.i
  A	src/lib/Version.cpp
  A	src/lib/Version.h
  A	src/lib/Version.i
  A	src/lib/common.h
  A	src/lib/common.i
  A	src/lib/config.i
  A	src/lib/io.cpp
  A	src/lib/io.h
  A	src/lib/io.i
  A	src/lib/lapack.c
  A	src/lib/lapack.h
  A	src/lib/lapack.i
  A	src/lib/versionstring.i
  A	src/preproc/LogPlusOne.cpp
  A	src/preproc/LogPlusOne.h
  A	src/preproc/NormDerivativeLem3.cpp
  A	src/preproc/NormDerivativeLem3.h
  A	src/preproc/NormOne.cpp
  A	src/preproc/NormOne.h
  A	src/preproc/PCACut.cpp
  A	src/preproc/PCACut.h
  A	src/preproc/PreProc.cpp
  A	src/preproc/PreProc.h
  A	src/preproc/PruneVarSubMean.cpp
  A	src/preproc/PruneVarSubMean.h
  A	src/preproc/RealPreProc.h
  A	src/preproc/ShortPreProc.cpp
  A	src/preproc/ShortPreProc.h
  A	src/preproc/SimplePreProc.h
  A	src/preproc/SortUlongString.cpp
  A	src/preproc/SortUlongString.h
  A	src/preproc/SortWord.cpp
  A	src/preproc/SortWord.h
  A	src/preproc/SortWordString.cpp
  A	src/preproc/SortWordString.h
  A	src/preproc/SparsePreProc.h
  A	src/preproc/StringPreProc.h
  A	src/preproc/WordPreProc.cpp
  A	src/preproc/WordPreProc.h
  A	src/regression/svr/LibSVR.cpp
  A	src/regression/svr/LibSVR.h
  A	src/regression/svr/SVR_light.cpp
  A	src/regression/svr/SVR_light.h
  A	src/sg.m
  A	src/svm/svm_learn.h
  A	src/swigfiles/common.i
  A	src/tests/script2
  A	src/tests/test_it.scr
  A	src/tests/test_it2.scr
  A	tests/gen_int.cpp
  A	tests/gen_sparse.cpp
  A	tests/runtime_type_detection.cpp
  A	tests/type_comparison.cpp
