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User manual - First steps
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1- Getting started with the graphical interface
===============================================

1-1 Main window
'''''''''''''''
.. image:: /user_manual/graphical_interface/getting_started/generalOverview.png
    :align: center
    :width: 640px

The main window of the graphical interface consists of a working space in which the other
windows (model definition or result window) open, surrounded by:

- The **study tree** displays the models and analyses performed in the studies. Elements are organized
  in sections, in bold (ex: **Physical models**, **Evaluation**, **Definition**), in which the user can create analyses and models.

  .. image:: /user_manual/graphical_interface/getting_started/tree.png
      :align: center


- The main **menu bar** and **tool bar**.

  .. image:: /user_manual/graphical_interface/getting_started/menuBar.png
      :align: center


- The **Python console** shown by default,

  .. image:: /user_manual/graphical_interface/getting_started/pythonConsole.png
      :align: center


- The **Graph settings** window appears when a figure is displayed in the main window to set up graphical parameters.
  Its content varies according to the type of graph:

.. _firstgraphsettings:

    - for the **Parallel coordinates plots** and the **Plot matrix**, the window allows one to:
       - Select the variables to display and the axis order
       - Modify the space where the values are plotted with the **Ranks** check button
         (default: physical space). Check off the button to display the rank of the values
       - Export the figure

       .. image:: /user_manual/graphical_interface/getting_started/cobweb_plotMatrix_Graph_settings.png
         :align: center


.. _secondgraphsettings:

    - for the charts, the window allows one to:
       - Export the figure
       - Specify the graph title (expected: string)
       - Specify axis title (expected: string) in the **X-axis** and **Y-axis** tabs
       - Depending on the graph:
           - Select data to plot
           - Modify the space where the values are plotted with the **Ranks** check button
             (default: physical space). Check off the button to display the rank of the values
           - Specify other axis parameters in the **X-axis** and **Y-axis** tabs:
               - minimum/maximum bounds (expected: floating point)
               - log scale (check button only available if axis values are positive)
               - X-axis label orientation
           - Reset the axis ranges
           - Specify the **plot style**: color, marker size and style (cross, circle, diamond, square, plus)

      .. image:: /user_manual/graphical_interface/getting_started/graphicConfiguration.png
        :align: center


1-2 On startup
''''''''''''''

.. image:: /user_manual/graphical_interface/getting_started/window_startUp.png
    :align: center

The interface startup window shows 3 items:
  - **New study**: Create a new study.
  - **Open study**: Choose an existing study from a dialog box.
    The loaded study becomes the current study.
  - **Import Python script**: Load a Python Script from a dialog box.
    It is impossible to load a study when another one is already opened.


.. |infoButton| image:: /user_manual/graphical_interface/probabilistic_analysis/documentinfo.png

- Click on the icon |infoButton| to open the documentation

1-3 Menus
'''''''''

File Menu
~~~~~~~~~

.. image:: /user_manual/graphical_interface/getting_started/fileMenu.png
    :align: center

The **File** menu gathers the following shortcuts:

- **New**: Create a new study.

- **Open...**: Choose an existing study from a dialog box.
  The loaded study becomes the current study.

- **Open Recent**: Quick access to recently loaded studies.

- **Save**: Save the current study.

- **Save As...**: Choose the directory where to save the current project.

- **Import Python...**: Load a Python Script from a dialog box.

- **Close**: Close the current Study. A pop-up dialog window appears if the current Study has not been saved.
  Any Study may also be closed through its context menu.

- **Exit**: Quit the interface.

View Menu
~~~~~~~~~

.. image:: /user_manual/graphical_interface/getting_started/viewMenu.png
    :align: center

The **View** menu allows the user to display/hide the Python console.

Help Menu
~~~~~~~~~

.. image:: /user_manual/graphical_interface/getting_started/helpMenu.png
    :align: center

The **Help** menu gathers the following shortcuts:

- **User's manual**: Open the user's manual in a Web browser.

- **About Persalys**: Display information (version, license, libraries, etc.) about the interface in a pop-up dialog window.

2- Create a study
=================

.. |newButton| image:: /user_manual/graphical_interface/getting_started/document-new22x22.png


There are several ways to create a new study:

- Use the button **New Study** of the startup window

  .. image:: /user_manual/graphical_interface/getting_started/startUpWindowButtons.png
      :align: center

- Click on |newButton| in the tool bar

- Click on **New** in the file menu

- Press Ctrl+N

When a study is created, an item appears in the study tree. This item is associated with a window
which provides ways to define models:

.. image:: /user_manual/graphical_interface/getting_started/window_OTStudy_startUp.png
    :align: center

The context menu of study item gathers the same actions as the window:

  .. image:: /user_manual/graphical_interface/getting_started/studyItemContextMenu.png
      :align: center

.. _modelsdefonstudywindow:

It proposes to create models:
  - Models defined with a vector function:
     - **Symbolic model**: Physical model defined with analytical formulas
     - **Python model**: Physical model defined with a Python script
     - **YACS model**: Physical model defined with a YACS scheme (optional)
     - **FMI model**: Physical model defined with a FMU file (optional)
  - Models defined with a field function:
     - **Symbolic Field model**: Physical model defined with analytical formulas and a mesh
     - **Python Field model**: Physical model defined with a Python script and a mesh
  - Models defined with a data sample:
     - **Data model**: Physical model defined with a sample

The context menu also allows the following actions:
  - **Rename**: Rename the study
  - **Export Python**: Choose a directory to export the study as a Python script
  - **Save**: Save the study
  - **Close**: Close the study. A pop-up dialog window appears if the study has not been saved
